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From 07/16/2010 to 08/14/2010

08/13/2010

08:28 PM Bug #5095: test kepler and wrp for memory leaks
Ben, cool. Thanks. jianwu jianwu
08:25 PM Bug #5095: test kepler and wrp for memory leaks
The data referenced on DEV is there - I was mistaken earlier about it being missing.
http://dev.nceas.ucsb.edu/knb/me...
ben leinfelder
06:48 PM Bug #5095: test kepler and wrp for memory leaks
We will get your 'jianwu' account (o=SDSC) set up so that you can read the data used in those workflows. Please don't... ben leinfelder
06:44 PM Bug #5095: test kepler and wrp for memory leaks
ben, I think it is for provenance since my current tests are just normal workflows, not those TPC workflows.
Thanks...
jianwu jianwu
06:18 PM Bug #5095: test kepler and wrp for memory leaks
Jianwu,
WHen you say hsqldb - is that for provenance, data, or both? I think one of the things the TPC workflows exer...
ben leinfelder
05:11 PM Bug #5095: test kepler and wrp for memory leaks
After digging a while using JConsole and Eclipse MAT plugin, I didn't found obvious memory leaks. As expected, hsqldb... jianwu jianwu

08/12/2010

04:10 PM Bug #5145: kepler library skin is mostly broken
The interface and the search query back end needs to allow more sophisticated queries than just search, e.g., ability... Ilkay Altintas
04:04 PM Bug #5145: kepler library skin is mostly broken
Those pictures looks great. Thank matt for the information. However, our goal is very simpler - it can display the in... Jing Tao
03:18 PM Bug #5145: kepler library skin is mostly broken
If you are in the process of revamping this stylesheet and presentation, its probably worthwhile to also consider imp... Matt Jones
02:46 PM Bug #5145: kepler library skin is mostly broken
Here are result discuss with ben:
The detail display of kar file will be:
Kar file name (download)
Workflow name 1 ...
Jing Tao
11:35 AM Bug #5145: kepler library skin is mostly broken
For the display details page I'd imagine just looping through each karEntry and displaying it's information:
-name*
-...
ben leinfelder
11:13 AM Bug #5145: kepler library skin is mostly broken
Here is the summary during our discussion (derik, ben and I):
1: Remove the broken image link
2. Add a section to di...
Jing Tao
03:55 PM Bug #5119: Make switching to a specific set of modules turn off automatic update feature
Thanks David, I'm now using this feature in 2.1 -- when a user with KARCompliance set to Strict restarts for a KAR re... Derik Barseghian
01:40 PM Bug #5147 (Resolved): Resolve issue with modules.txt
Automatic suite resolution has some issues with regard to patching. For example, if reporting-2.1.0 contains a self-r... David Welker
12:11 PM Bug #5137: database exception when using 'ant run' at windows 7.
I can not reproduce the error after a fresh checkout. It's weird that the exception was still there even I did 'ant u... jianwu jianwu
12:11 PM Bug #5140: Ecogrid Authentication Error at Kepler trunk on windows 7.
I can not reproduce the error after a fresh checkout. It's weird that the exception was still there even I did 'ant u... jianwu jianwu

08/11/2010

06:14 PM Bug #5145: kepler library skin is mostly broken
You can see the Browse the other examples I've uploaded here: http://fred.msi.ucsb.edu:8080/knb/
Sorry one of the "ka...
Derik Barseghian
05:30 PM Bug #5145 (Resolved): kepler library skin is mostly broken
The kepler library skin should be reworked now that we're uploading KARs.
http://library.kepler-project.org/kepler/...
Derik Barseghian
06:10 PM Bug #5121: Provide a button to manually check for updates
The button is now present and working. David Welker
05:59 PM Bug #5140: Ecogrid Authentication Error at Kepler trunk on windows 7.
I tested with 'kepler' account, the exception is exact the same.
If a user uses a fake account, the error pop up di...
jianwu jianwu
05:24 PM Bug #5140: Ecogrid Authentication Error at Kepler trunk on windows 7.
Can you authenticate with valid credentials?
Otherwise, I'm confused why this is a bug - you entered a fake username/...
ben leinfelder
02:12 PM Bug #5140 (Resolved): Ecogrid Authentication Error at Kepler trunk on windows 7.
From 'Tools->Ecogrid Authentication' menu item, I chose 'DEV' domain and tried a fake username and password. The conn... jianwu jianwu
05:53 PM Bug #5146 (Resolved): modifying and saving the composite sinewave actor fails
Trying to make changes to the Sinewave actor that ships with Kepler and then trying to save that actor as a KAR file ... Matt Jones
05:43 PM Bug #5126: Determine whether we need to make installers for all minor releases
Thanks, I'm closing this one.
We run the risk of users not having the most recent version and
of confusing the user ...
Christopher Brooks
05:05 PM Bug #5126: Determine whether we need to make installers for all minor releases
Does anyone object to me closing this? David Welker
05:27 PM Bug #5144 (Resolved): renaming an actor does not persist in saved kar files
When one renames an actor on the canvas, and then selects that actor and chooses 'Save KAR...' in the context menu, a... Matt Jones
05:17 PM Bug #5119: Make switching to a specific set of modules turn off automatic update feature
The functionality for this is ready to go. Derik just needs to make an appropriate call at the appropriate time.
The...
David Welker
05:15 PM Bug #5143 (Resolved): not getting prompted to upgrade to available patched version in test area
I current have published to the test area reporting-2.0.0, reporting-2.1.0, and reporting-2.1.1. If you're run report... Derik Barseghian
04:56 PM Bug #5142 (Resolved): comma improperly inserted in kar filename rather than a period (.)
When KAR files are saved, with a name such as "foo.kar", then show up incorrectly in the kepler component pane with a... Matt Jones
12:59 PM Bug #5070: Changing the "Available Modules" tab in the Module Manager to "Available Suites and Modules"
Done. David Welker

08/10/2010

12:05 PM Bug #5137 (Resolved): database exception when using 'ant run' at windows 7.
The following exceptions keep showing when I tried to start Kepler using 'ant run'. I had to use 'Ctrl C' to stop it.... jianwu jianwu

08/09/2010

04:48 PM Bug #5136 (Resolved): semantic type checker always returns error
Chris Weed reported:
When I apply a semantic type to an input and output port that are
connected, the semantic ty...
Matt Jones
03:29 PM Bug #4191: Eclipse build is slow the first time "Copying resources to the output folder"
I exclude test directories in ptolemy .classpath file so that the build will be faster. Now building ptolemy takes ab... jianwu jianwu
11:55 AM Bug #4191: Eclipse build is slow the first time "Copying resources to the output folder"
The status I found is that only ptolemy module doesn't filter .svn correctly. I updated the build-area\resources\ecli... jianwu jianwu
02:01 PM Bug #5126: Determine whether we need to make installers for all minor releases
I think we're all in agreement about wanting installers most of the time. However, in the case of 2.1, the changes a... Matt Jones
01:33 PM Bug #5126: Determine whether we need to make installers for all minor releases
If we don't automatically offer updates, then by default, users will
be using 2.0.
This seems wrong. Why bother wit...
Christopher Brooks
01:28 PM Bug #5126: Determine whether we need to make installers for all minor releases
If you have 2.0, you will be able to get 2.1 using the module manager. It will not be automatic. In general, if a min... David Welker
08:09 AM Bug #5126: Determine whether we need to make installers for all minor releases
So, once Kepler-2.1 is released, if I download the 2.0 installer, will
I automatically be updated to 2.1? How will I...
Christopher Brooks
11:24 AM Bug #5133 (Resolved): Authentication and authorization of GPP server
Just open this bug. We need those mechanism in GPP server. Dan can give more details. Jing Tao
09:21 AM Bug #5065: In shared or administrative installations, the ability to store modules.txt and extra modules locally. This way, the module manager will work smoothly on Windows without having to run as an administrator.
To update, this Thursday we had a meeting where, among other things, we discussed how to proceed with this problem. W... David Welker

08/06/2010

04:09 PM Bug #5132 (Resolved): Connecting Workflow Run Manager to remote KAR store should prompt for credentials
We need an authentication and authorization mechanism for client kepler to access remote Provenance DB.
We can bor...
Jing Tao
03:30 PM Bug #5131 (Resolved): Authentication and authorization of Scheduler server
When a user tries to schedule a workflow through a kepler client, the scheduler server should check weather the user ... Jing Tao
03:11 PM Bug #5130 (Resolved): Need a login and logout interface for authenticating a user
When kepler client tries to schedule running a workflow or read data/report from remote Provenance DB, it should have... Jing Tao
02:21 PM Bug #5129 (In Progress): adding and removing configuration properties could be made easier
Now that we've shipped 2.0, if a developer wants to add a new configuration property to a config file, they must firs... Derik Barseghian

08/05/2010

04:32 PM Bug #5122: Develop an approval process for patches
Moving this to 2.2 target in case we want to discuss it further then. Derik Barseghian
04:21 PM Bug #5122: Develop an approval process for patches
To clarify, releasing a patch is a module-level event.
Each minor release will have its own branch in svn, and if two...
Derik Barseghian
04:28 PM Bug #5121: Provide a button to manually check for updates
Also, a button for toggling the automatic checking for updates on startup. Derik Barseghian
04:27 PM Bug #5082: Eclipse build fails because of invalid archive
I believe the bug is because of an extra space in one line of Eclipse.java. Now (at version 25232) ptII.properties.in... jianwu jianwu
04:26 PM Bug #5119: Make switching to a specific set of modules turn off automatic update feature
Since I'm working on the Import Dependent Modules feature, if you can simply provide an methods that I can call to ge... Derik Barseghian
04:23 PM Bug #5126: Determine whether we need to make installers for all minor releases
Today we decided not all minor releases require an installer be released. 2.1 will not have an installer, users will ... Derik Barseghian
04:14 PM Bug #5099: Import Dependent Modules for KAR doesn't work
These changes will be put into a new 2.1 branch, and removed from the 2.0 branch.
Yesterday I made more progress on ...
Derik Barseghian
03:52 PM Bug #5097: kepler.sh accepts a limited number of arguments
It is now fixed by changing bash and bat to:
kepler.sh:
java -classpath build-area/lib/ant.jar:kepler.jar org.kepler...
jianwu jianwu

08/04/2010

02:34 PM Bug #5124: Add/fix the ability to patch a suite
Fixed. David Welker
12:23 PM Bug #5124 (Resolved): Add/fix the ability to patch a suite
Currently, when you attempt to patch a suite using the instructions on the wiki, you get an error.
Example:
nce...
Sean Riddle
12:34 PM Bug #5127 (Resolved): Make a good way to publish a suite without changing a bunch of modules.txt files
As shown in the publishing instructions page on the wiki (https://kepler-project.org/developers/teams/build/documenta... Sean Riddle
12:29 PM Bug #5126 (Resolved): Determine whether we need to make installers for all minor releases
It seemed like a foregone conclusion that installers would be made for all minor and major releases. On the other han... Sean Riddle
12:27 PM Bug #5125 (Resolved): Add feature to do a one-step revert of a botched update from outside of Kepler
If a patch does not work correctly, it is possible that Kepler will fail to restart after the patch's installation. T... Sean Riddle
12:19 PM Bug #5123 (New): Create an ant task to display commits since last patch of a given module
Patches of modules are distributed as a zip containing the entire module. This means that someone can release a patch... Sean Riddle
12:16 PM Bug #5122 (New): Develop an approval process for patches
At present, releasing a patch releases all changes made to the applicable release branch. If not very many people are... Sean Riddle
12:11 PM Bug #5121 (Resolved): Provide a button to manually check for updates
At present, updates are detected at Kepler startup. Add a button or menu entry that allows the user to manually check... Sean Riddle
12:08 PM Bug #5120 (New): Provide a toggle for automatic updates
Add a menu option that allows the user to toggle between automatic checking for updates at startup and not. Sean Riddle
12:07 PM Bug #5119 (Resolved): Make switching to a specific set of modules turn off automatic update feature
Otherwise, as soon as someone restarts Kepler in a specific module configuration (that is not the most recent patched... Sean Riddle

08/02/2010

05:11 PM Bug #5116: add lat/lon to sensor metadata and use during import
Ilkay's work on metadata also indicated this information might be present in the SensorML metadata or EML metadata --... Matt Jones
04:19 PM Bug #5116 (In Progress): add lat/lon to sensor metadata and use during import
The site layout in engineering workflows can reflect the physical layout of sensors at a deployment site. If lat/lon ... Daniel Crawl

07/30/2010

12:51 PM Bug #5115: enable system properties setting by updating kepler.sh or kepler.bat
It is fixed at version 25216. Now users can set properties by updating kepler.sh or kepler.bat by adding '-DProperty1... jianwu jianwu
12:35 PM Bug #5115 (Resolved): enable system properties setting by updating kepler.sh or kepler.bat
Originally reported by Chris Weed by asking how to launch kepler 2.0 with proxy settings(http://mercury.nceas.ucsb.ed... jianwu jianwu

07/29/2010

08:13 PM Bug #5065: In shared or administrative installations, the ability to store modules.txt and extra modules locally. This way, the module manager will work smoothly on Windows without having to run as an administrator.
There are some serious complications to the solution of storing modules in multiple locations. This is not a "simple"... David Welker
05:41 PM Bug #5065: In shared or administrative installations, the ability to store modules.txt and extra modules locally. This way, the module manager will work smoothly on Windows without having to run as an administrator.
Running as administrator or other root-level accounts is likely to be a security issue, as it allows escalation of p... Matt Jones
04:26 PM Bug #5065: In shared or administrative installations, the ability to store modules.txt and extra modules locally. This way, the module manager will work smoothly on Windows without having to run as an administrator.
I think another approach would work better for the problem of permissions on Windows. Moving modules to exist on mult... David Welker
01:40 PM Bug #5026: Error dialog pop up in RC3 when closing the ImageJ window after workflow execution.
Hey Sean, could we submit your patch to the IJ folks? If we upgrade to a new version of IJ it sounds like we might ha... Derik Barseghian
01:31 PM Bug #5026: Error dialog pop up in RC3 when closing the ImageJ window after workflow execution.
Fixed in r25200-1 in trunk. Now ImageJ configuration is stored in the persistent configuration for the common module.... Sean Riddle

07/28/2010

06:51 PM Bug #5099: Import Dependent Modules for KAR doesn't work
Checked in a first pass at this into 2.0 in r25165. Not yet in trunk. Derik Barseghian

07/27/2010

03:45 PM Bug #5077: add real inputs and outputs to sensor actor
This is works now: the output port for sensor sample data, and two input ports for turning sensor on/off, and setting... Daniel Crawl

07/23/2010

09:43 AM Bug #4342: apple-extensions module on windows make Eclipse build difficult
I'm confirming that this is fixed in the kepler trunk under Windows with Eclipse.
However, as expected, the problem p...
Christopher Brooks

07/22/2010

08:59 PM Bug #5089: Replace operating system specific files with operating system specific modules.
I have implemented this as a fix for another bug. Closing. David Welker
08:58 PM Bug #4342: apple-extensions module on windows make Eclipse build difficult
This should be fixed. The apple-extensions module should no longer download on Windows and should be ignored by the "... David Welker
06:34 PM Bug #5100: Report Layout designed in a composite actor window is lost
fixed in 2.0 at r25138 Derik Barseghian
11:16 AM Bug #5096: Reporting on a RecordToken fails
I checked this fix into trunk at r25112 Derik Barseghian
11:13 AM Bug #5096: Reporting on a RecordToken fails
Yeah, it was assumed that each value of a RecordToken's subtokens were ArrayTokens -- casted without checking. Derik Barseghian
10:58 AM Bug #5096: Reporting on a RecordToken fails
was this because I was assuming there was more than one value per label (ie an ArrayToken)? ben leinfelder
11:16 AM Bug #5094: reports do not display matrix or xml token data
I checked this fix into trunk at r25112 Derik Barseghian
10:52 AM Bug #5069: The ability to create user manuals from a wiki that is continuously updated.
1 vote for LaTex:
Jim Regetz and I converted the Morpho user guide from Word to LaTex - seems much more manageable th...
ben leinfelder

07/21/2010

06:18 PM Bug #5100: Report Layout designed in a composite actor window is lost
fixed in trunk at r25131. Need to merge into 2.0 Derik Barseghian
12:59 PM Bug #5100 (Resolved): Report Layout designed in a composite actor window is lost
When you have a workflow with a composite actor, and you open the composite actor, its contents appear in a new keple... Derik Barseghian
04:51 PM Bug #5085: add table of contents to User's Guide
correct hours. jianwu jianwu
04:51 PM Bug #5085: add table of contents to User's Guide
Found more tasks than expected.
added TOC, page number and glossary section. fixed problems (document map, figure i...
jianwu jianwu
01:23 PM Bug #5101 (Resolved): Composite Actor windows show wrong title after workflow Rename
If you use the canvas Rename context menu to rename your workflow that contains composite actors, then Open Actor to ... Derik Barseghian
12:02 PM Bug #5099 (Resolved): Import Dependent Modules for KAR doesn't work
If you create a KAR that depends on modules that you're not currently running, the KAR icon in the Components pane sh... Derik Barseghian

07/20/2010

12:42 PM Bug #5096: Reporting on a RecordToken fails
Should be fixed in 2.0 at r25111.
Leaving open for testing and until checked into trunk.
Derik Barseghian
12:42 PM Bug #5094: reports do not display matrix or xml token data
Should be fixed in 2.0 at r25111.
Leaving open for testing and until checked into trunk.
Derik Barseghian

07/19/2010

03:40 PM Bug #5098: Save Archive (KAR)... will have exception when internet is not accessible.
This is my first time to see the error message. I think this feature worked on Kepler release candidate 1, 2 and 3. Jing Tao
03:30 PM Bug #5098 (Resolved): Save Archive (KAR)... will have exception when internet is not accessible.
Found by Chris Weed, I can reproduce it.
It happens when I right-click the actor, choose 'Save Archive (KAR)...' a...
jianwu jianwu

07/16/2010

01:07 PM Bug #5097: kepler.sh accepts a limited number of arguments
The arguments in kepler.sh were enumerated separately to handle arguments containing spaces. Any solution to this bug... Daniel Crawl
08:53 AM Bug #5097: kepler.sh accepts a limited number of arguments
Under /bin/sh in $PTII/bin/ptinvoke.in, we use "shift" to remove script specific
arguments and then use ${1+"$@"} to ...
Christopher Brooks
12:35 PM Bug #4801: out of memory
Related to 5095, but a specific form of it. Derik will review and try to regenerate the bug as an extension to 5095. Ilkay Altintas
12:32 PM Bug #4642: memory usage & slowdowns
Seems similar to 5095. Derik will further analyze. Ilkay Altintas
08:49 AM Bug #4642: memory usage & slowdowns
See also bug 5095.
This bug should be primarily about performance, though memory management
will take part.
For inf...
Christopher Brooks
12:22 PM Bug #5095: test kepler and wrp for memory leaks
Derik will ask Sean for his experience with it and update the time estimate. Ilkay Altintas
08:44 AM Bug #5095: test kepler and wrp for memory leaks
How I've fixed memory leaks in the past is by writing Java test cases that
illustrate the bug and then using commerci...
Christopher Brooks
 

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