Kepler

12/01/2011

09:20 AM Bug #5486: Need a mechanism to tell the user the information about setup the scheduler and workflow run engine

Yes. this one is done. User will be notified to set up the scheduler and the workflow run engine when they click the ... Jing Tao

11/30/2011

05:16 PM Bug #5559 (New): Curation Package User Manual PDF

The Kuration Package User Manual PDF would be easier to use if the pages carried page numbers. Bob Morris

01:03 PM Bug #5458: Moving between 2.2 and 2.3 and back requires deleting ~/KeplerData

The current plan is to suggest to users in the release announcement that they uninstall past versions of kepler, and ... Derik Barseghian

12:59 PM Bug #5429: improve default provenance store performance

Iirc to make significant further gains in performance we need to move to HSQL 2.x, which Dan and I both made unsucces... Derik Barseghian

12:54 PM Bug #5413: large run deletion via the WRM with hsql provenance store takes a very long time and no gui feedback

The wait cursor is there now. Performance should still be improved, but retargeting to reporting-2.x.y. Derik Barseghian

12:53 PM Bug #5426: workflow lsid changes when running from command line

Seems like an advanced user usecase, so retargeting post reporting-2.3.0. Please put it back if you feel otherwise. Derik Barseghian

12:52 PM Bug #5486: Need a mechanism to tell the user the information about setup the scheduler and workflow run engine

Hey Jing, I think you're done with this one, yeah? Can you close or update w/ status? Derik Barseghian

12:51 PM Bug #5425: error when running -nocache and no .kepler

This seems like an advanced user usecase, and can be pushed post reporting-2.3.0, so retargeting.
Please put it back ... Derik Barseghian

07:52 AM Bug #5558 (New): Add kepler-tasks target to build.xml and use depend in kepler-tasks.xml

The attached patch adds a new target, kepler-tasks, to run 'ant -f kepler-tasks.xml'. It also uses depend to avoid f... dhogan dhogan

11/29/2011

12:44 PM Bug #5557: Replace hardcoded path separator with File.pathSeparator

Added a few more fixes. The importance should be bumped to normal because it's no longer just a cosmetic fix. When ... dhogan dhogan

11:58 AM Bug #5557 (New): Replace hardcoded path separator with File.pathSeparator

The org.kepler.build.project.Classpath class uses ":" rather than File.pathSeparator. It will display incorrectly on... dhogan dhogan

09:43 AM Bug #5556 (New): Add key bind to GUI to avoid connecting edge prematurely

It would be really nice if Diva had some key bind to allow you to avoid connections. A common use case would be when... dhogan dhogan

09:25 AM Bug #5555 (New): Add reverse index in ArrayElement

Trivial enhancement to add reverse index to ArrayElement in Ptolemy. dhogan dhogan

11/28/2011

02:58 PM Bug #5554 (In Progress): Build system doesn't recompile using dependencies by default

The build system is using the Javac task's default dependency mechanism which checks mtimes of source code vs. class ... dhogan dhogan

11:18 AM Bug #5502: use https to svn check out modules

This should be straightforward to incorporate. I'll check with Derik about whether it can go in 2.3.0, but it certai... Matt Jones

11:11 AM Bug #5502: use https to svn check out modules

This would make it easier to track development behind a corporate firewall.
Attached is a patch that uses https for ... dhogan dhogan

11/23/2011

02:53 PM Bug #5456: Documentation for Reporting 2.3.0

workflow-scheduler-gui-1.0.0 doc done.
Closing. Derik Barseghian

02:50 PM Bug #5552 (Resolved): Workflow Scheduler GUI needs a licenses.txt file

We need a licenses.txt for this suite before release.
See reporting's module-info/licenses.txt for example. Derik Barseghian

12:03 PM Bug #5290: originModule not always set

Discussed w/ Jing and Dan.
Can now be retargeted to 2.4.0. Derik Barseghian

11/22/2011

11:41 AM Bug #5550 (Resolved): Windows installer should be a .exe, not a .jar

Downloading and running a .jar file under Windows Server 2008 is tricky.
Basically, the user needs to run a command ... Christopher Brooks

11:17 AM Bug #5508: Link to "Additional background information on Ptolemy" brings up empty page

Verified fixed in rc4 on Windows Server 2008 w/ java7 Christopher Brooks

10:29 AM Bug #5290: originModule not always set

For workflow-scheduler-gui module, i changed to use overwrite approach adding the preference tabs. This approach woul... Jing Tao

11/21/2011

07:29 PM Bug #5506: Windows Installer Page does not mention 2.3?

Verified not in rc4 Derik Barseghian

07:28 PM Bug #5508: Link to "Additional background information on Ptolemy" brings up empty page

Verified fixed in rc4 on XP w/ java7 Derik Barseghian

02:58 PM Bug #5508: Link to "Additional background information on Ptolemy" brings up empty page

I've switched kepler-2.3 to use this new branch of ptolemy.
On Windows XP I installed java 1.7 (runtime 1.7.0.01_b08)... Derik Barseghian

05:15 PM Bug #5549: Help=>Modules Documentation not working in ubuntu

Fixed at r28983 and r28984. Class now uses existing ptII BrowserLauncher instead of its own, which wasn't working. Wo... Derik Barseghian

03:30 PM Bug #5549 (Resolved): Help=>Modules Documentation not working in ubuntu

If you click on e.g. reporting from Modules Documentation, you get an error that isn't helpful.
It's coming from mod... Derik Barseghian

03:13 PM Bug #5501: Got an java.lang.NullPointerException when click any menu after downloading a kar file

No objections (http://lists.nceas.ucsb.edu/kepler/pipermail/kepler-dev/2011-November/019957.html ) so I've committed ... Derik Barseghian

11/17/2011

04:52 PM Bug #5545: Configure Ports dialog Type column gui annoyances

Also, why is "xmltoken" an option in the list? For double you enter "double", not DoubleToken, etc. Derik Barseghian

04:38 PM Bug #5545 (Resolved): Configure Ports dialog Type column gui annoyances

* On OS X, when choosing or typing in a Type, there isn't enough vertical space and characters can be hard to read.
... Derik Barseghian

04:50 PM Bug #5546 (Resolved): SDF director iterations parameter default of 0 is unfriendly

I know this was debated/changed at least once in the past, but I can't remember many of the details...at one point Aa... Derik Barseghian

11/15/2011

11:38 PM Bug #5541 (New): Kepler crashes on startup with NoClassDefFoundError

1. No response when starting Kepler from start menu.
2. Changing to Kepler installation directory and running kepl... Simon Thomas

08:10 PM Bug #5508: Link to "Additional background information on Ptolemy" brings up empty page

Yes r61797 is right.
Thanks for doing this.
I'll try to switch kepler-2.3 to use this branch, probably early next wee... Derik Barseghian

10:18 AM Bug #5508: Link to "Additional background information on Ptolemy" brings up empty page

Ok, I created a branch with:
svn copy -r 61797 svn+ssh://source.eecs.berkeley.edu/chess/ptII/trunk svn+ssh://source.e... Christopher Brooks

12:14 AM Bug #5508: Link to "Additional background information on Ptolemy" brings up empty page

Do you mean you'd create a branch (61797 + 62410) in the ptolemy repo with this change for me to refer to?
Otherwise ... Derik Barseghian

11/14/2011

11:14 PM Bug #5508: Link to "Additional background information on Ptolemy" brings up empty page

I would fold the change to HTMLViewer in to a branch just 2.3. I agree that there are many changes and we may not wa... Christopher Brooks

11:10 PM Bug #5508: Link to "Additional background information on Ptolemy" brings up empty page

It's probably worth it, but note this means a large jump in the utilized revision of ptolemy (61797 to 62410) and rep... Derik Barseghian

02:54 PM Bug #5508: Link to "Additional background information on Ptolemy" brings up empty page

This is a Java 1.7 problem, I'm able to replicate the problem under Java 1.7
under Mac OS X.
I checked in a fix:
bas... Christopher Brooks

11:02 PM Bug #5540 (Resolved): Automate Layout no longer uses Kieler on trunk

Awhile ago I changed Automate Layout to use a Kieler layout option. This broke at one point and I fixed it for 2.3 (b... Derik Barseghian

10:37 AM Bug #5529: Documentation for some actors such as Run Composite Actor is empty

It is good that we are making progress on this, see also
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4909
Acto... Christopher Brooks

10:32 AM Bug #5529: Documentation for some actors such as Run Composite Actor is empty

I've updated KeplerMetadataExtractor to display a warning when userLevelDocumentation is not enclosed by a KeplerDocu... Daniel Crawl

10:11 AM Bug #5529: Documentation for some actors such as Run Composite Actor is empty

I've updated the KARCacheManager to reload KARs if their modified time is different than when they were loaded into t... Daniel Crawl

11/13/2011

06:03 PM Bug #5508: Link to "Additional background information on Ptolemy" brings up empty page

The latest Kepler 2.3.0 rc3 continues to display a blank intro window under Windows Server 2008 when run with Java 1.... Christopher Brooks

10:02 AM Bug #5509: How do I run the demos

In a kepler-users post, Allen Hartley Hurlbert wrote:
"Yes, the demos run fine (although I'll note that finding the ... Christopher Brooks

11/12/2011

06:57 PM Bug #5539 (Resolved): Open Actor does not find the actor source code when Kepler is invoked from within Eclipse

Marc and I noticed that "Open Actor" fails to find the source code when Kepler is invoked from within Eclipse.
I l... Christopher Brooks

06:56 PM Bug #5538 (New): Eclipse uses different .class files from ant run

Kepler creates a separate target directory for .class files that are built
using ant and yet another target director... Christopher Brooks

11/10/2011

08:24 PM Bug #5501: Got an java.lang.NullPointerException when click any menu after downloading a kar file

Strangely my stacktrace has different line numbers than Jing's, and googling my numbers yield more results. Unfortuna... Derik Barseghian

08:21 PM Bug #5501: Got an java.lang.NullPointerException when click any menu after downloading a kar file

Another bug that seems to fairly consistently happen after your first remote Component search is that after clicking ... Derik Barseghian

07:54 PM Bug #4613: EML 2 Dataset automatically updating to latest package doesn't trigger "workflow change"

I'm guessing this is fixed by the fix for bug#5504, but needs testing. Derik Barseghian

07:16 PM Bug #5290: originModule not always set

Ok, what's happening is reporting and workflow-run-manager override some properties in gui and common's configuration... Derik Barseghian

05:37 PM Bug #5504: Kepler incorrectly uses old version of a kar file in ~KeplerData/workflows/MyWorkflows

Fixed at r28927-28.
You'll want to re-instantiate your EML 2 Dataset actors instantiated from a Data search result. Derik Barseghian

11/09/2011

04:43 PM Bug #5504: Kepler incorrectly uses old version of a kar file in ~KeplerData/workflows/MyWorkflows

After discussion with the group the current plan is to, when dragging out an EML 2 Dataset actor from the Data pane, ... Derik Barseghian

02:40 PM Bug #5504: Kepler incorrectly uses old version of a kar file in ~KeplerData/workflows/MyWorkflows

Except I guess no "http://" in the authority.
(In reply to comment #8)
> KeplerLSID format:
> urn:lsid:<authority>:<... Derik Barseghian

02:39 PM Bug #5504: Kepler incorrectly uses old version of a kar file in ~KeplerData/workflows/MyWorkflows

KeplerLSID format:
urn:lsid:<authority>:<namespace>:<object>:<revision>#<anchor>
(https://kepler-project.org/develope... Derik Barseghian

02:14 PM Bug #5504: Kepler incorrectly uses old version of a kar file in ~KeplerData/workflows/MyWorkflows

So when you drag a Data search result onto the canvas, the actor has a null LSID. Changes to this LSID-less actor don... Derik Barseghian

11:46 AM Bug #5504: Kepler incorrectly uses old version of a kar file in ~KeplerData/workflows/MyWorkflows

The problem is that changes to an EML200DataSource instantiated from the *Data panel* does not increment the workflow... Derik Barseghian

08:19 AM Bug #5504: Kepler incorrectly uses old version of a kar file in ~KeplerData/workflows/MyWorkflows

Hi, Derik:
Did you try the two version of kar files which are in the attachment? May they will be helpful.
Thanks,
... Jing Tao

02:52 PM Bug #5290: originModule not always set

Retarget to 2.3, this is now manifesting when changing from reporting to kepler after Jing's change to include a work... Derik Barseghian

11/08/2011

07:53 PM Bug #5504: Kepler incorrectly uses old version of a kar file in ~KeplerData/workflows/MyWorkflows

I think the question is: How is it that these kars contain different workflows that have the same LSID? I think the i... Derik Barseghian

06:54 PM Bug #5508: Link to "Additional background information on Ptolemy" brings up empty page

I haven't been able to reproduce this on XP. I don't have Windows Server 2008, so will probably need you to test agai... Derik Barseghian

06:46 PM Bug #5507: Windows Installer: The R choice is not unselectable

Should be fixed at r28913-14:
fix http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5507 -- no longer show unchangea... Derik Barseghian

06:38 PM Bug #5505: Kepler-2.3 installer should create directory named "Kepler-2.3", not "Kepler"

I didn't see a quick solution using IzPack, and since time is short, I've reverted to including the version number in... Derik Barseghian

06:14 PM Bug #5501: Got an java.lang.NullPointerException when click any menu after downloading a kar file

This is related to our using JGoodies Looks (LnF_looks-1.3.2.jar) for our linux LnF. On Ubuntu 10.04 if you use the n... Derik Barseghian

11/05/2011

01:15 PM Bug #5529: Documentation for some actors such as Run Composite Actor is empty

Thanks, I now get the Run Composite Actor documentation. There should be a bug report for the problem where userLeve... Christopher Brooks

11/04/2011

06:30 PM Bug #5529: Documentation for some actors such as Run Composite Actor is empty

The userLevelDocumentation property must be enclosed by the KeplerDocumentation property. I fixed this in RunComposit... Daniel Crawl

06:03 PM Bug #5529: Documentation for some actors such as Run Composite Actor is empty

Daniel suggested removing ~/.kepler to regenerate the docs. The docs are still empty for me after removing ~/.kepler. Christopher Brooks

11:34 AM Bug #4978: Create additional 'module' property for any menu entries that are inserted by non-core modules

I suspect this is the same problem described in bug 5290. What are the steps to reproduce it? Daniel Crawl

11/03/2011

07:21 PM Bug #4872: listen to director throws error

duplicates 5450 Daniel Crawl

07:20 PM Bug #5450: Menu: Help -> Kepler Documentation causes IllegalArgumentException

Fixed in r28869. RunWithFeedbackChkBoxAction was expecting the Ptolemy actions Debug->Animate Execution and Debug->St... Daniel Crawl

11:07 AM Bug #5529: Documentation for some actors such as Run Composite Actor is empty

For the first bug: in my experience, changes to the actor metadata file do not appear in Kepler unless .kepler is rem... Daniel Crawl