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From 02/03/2007 to 03/04/2007

03/04/2007

02:05 PM Bug #2790: Incorrect stacking of map records
Again, for Cleistes bifaria:
look at Brunswick Co, NC, the southeastern most county in the state.
Also Harnett, Onslo...
Robert Peet
01:38 PM Bug #2790: Incorrect stacking of map records
It seems fine to me. Could you please specify the name of one county where this problem happens, so I can quickly tes... xianhua liu
12:40 PM Bug #2790 (Closed): Incorrect stacking of map records
I mapped Cleistes bifaria. I then turned off the ambiguous records and saw several previously hidden unambiguous her... Robert Peet
01:30 PM Bug #2615: Failure to map WEWO and other non-NCU series in Specify
fixed xianhua liu
06:23 AM Bug #2615: Failure to map WEWO and other non-NCU series in Specify
County records from the WEWO series are not being mapped, but do show up in the specimens, and when one clicks on a c... Robert Peet
01:26 PM Bug #2754: X-IL record does not appear on map; Need category for misc records
Fixed.
The reason why X-IL records do not show up is that the herbarium specify database uses "X-ILL" (sometimes "X...
xianhua liu
06:44 AM Bug #2754: X-IL record does not appear on map; Need category for misc records
The X-IL record appears in specimens but not on the map
Unlike the related problem with WEWO (bug 2615), we here do ...
Robert Peet
01:21 PM Bug #2767: Adjust colors on maps
fixed Robert Peet
12:34 PM Bug #2767: Adjust colors on maps
fixed xianhua liu
06:01 AM Bug #2767: Adjust colors on maps
One more try
Current color New colors
Red Dark: 255-0-0 255-0-60
Red Light: ...
Robert Peet
05:09 AM Bug #2767: Adjust colors on maps
One more try at getting the colors right
Current color New colors
Red Dark: 255-0-0 ...
Robert Peet
12:39 PM Bug #2757: Concept relationships in county clickover need reordering
fixed xianhua liu
04:34 AM Bug #2757: Concept relationships in county clickover need reordering
Close, but need to reorder components
Current order = Source | Rel. | Name | Cult.
New order = Rel. | Name | So...
Robert Peet
12:23 PM Bug #2789: Optional reporting of ambiguous records
Fixed xianhua liu
08:30 AM Bug #2789 (Closed): Optional reporting of ambiguous records
On the map page, immediately above the cultivated check boxes, as a check box for show ambiguous records that default... Robert Peet
08:25 AM Bug #2788 (New): Kentucky atlas data
Add West Virginia and Kentucky atlas data. Provide place for these in legend. Initially treat as nominals unless we... Robert Peet
08:21 AM Bug #2699: Tool for users to submit county records
Postpone until next funding cycle Robert Peet
08:21 AM Bug #2698: Add traits tab
Bob needs to compile trait data for implementation. Robert Peet
08:18 AM Bug #2585: Allow ambiguous records only in states where taxon occurs
This is relatively important.
We can provide a list of states of occurrence for each of the Weakley concepts as a ...
Robert Peet
08:10 AM Bug #2589: Concepts as the basis for returning specimens and images.
This should be quick and easy Robert Peet
08:09 AM Bug #2657: Highlight species with too few counties and those with too many
depends on bug 2640 -- on hold for now Robert Peet
07:06 AM Bug #2657: Highlight species with too few counties and those with too many
duplicate bug Robert Peet
08:07 AM Bug #2725: Create log of changes generated by the Administration Page
postpone untilnext funding cycle Robert Peet
08:04 AM Bug #2725: Create log of changes generated by the Administration Page
Postpone until the next funding cycle Robert Peet
08:03 AM Bug #2630: Verification that CVS records map correctly to Weakley
Forbes will compile the list of taxon occurrences in the CVS database and pass on problems for RKP and AW to resolve.... Robert Peet
08:00 AM Bug #2602: Document concept references in Weakley flora
For 10779 concepts in the Weakley flora, specific references have not been ported into the seflora database. Jess lo... Robert Peet
07:13 AM Bug #2638: Ambiguous records should have details of ambiguity clickable
Postpone to next funding cycle Robert Peet
07:05 AM Bug #2584: 3. "Ambiguous" CVS and NCNHP records mapped differently from other ambiguous records
done Robert Peet
07:05 AM Bug #2584: 3. "Ambiguous" CVS and NCNHP records mapped differently from other ambiguous records
text will be part of homepage revision Robert Peet
07:03 AM Bug #2583: Compile complex and undefined concept relationships
Similar to bug 2583
Need to compile all the complex and ambiguous relationships and provide these to Alan as a set f...
Robert Peet
07:00 AM Bug #2594: Home page explanation of atlas, including ambiguous records
Need to rewrite the homepage to explain the site, including ambiguous records. Robert Peet
06:58 AM Bug #2631: Annotate demonstration set of databased speciemens to concept
Hold for next funding cycle
Need a demonstration dataset of annotated specimens. Perhaps Andropogon of Juglandaceae.
Robert Peet
06:56 AM Bug #2683: User submissions of new occurrence records
Hold for next funding cycle Robert Peet
06:55 AM Bug #2628: Dynamic versioning
This will be held for the next funding cycle Robert Peet
06:51 AM Bug #2599: 18. The "?" help buttons display pages with no content.
dup 2611 Robert Peet
06:51 AM Bug #2599: 18. The "?" help buttons display pages with no content.
Duplicate of 2611
*** This bug has been marked as a duplicate of 2611 ***
Robert Peet
06:51 AM Bug #2611: Help function text
*** Bug 2599 has been marked as a duplicate of this bug. *** Robert Peet
06:49 AM Bug #2611: Help function text
Need to provide specific help messages to be referenced by the help symbol on the webpage. Robert Peet
06:47 AM Bug #2653: Removal of Databased Publications
fixed Robert Peet
06:47 AM Bug #2653: Removal of Databased Publications
fixed by Lisa Robert Peet
06:26 AM Bug #2604: 23. County and state pulldowns
fixed Robert Peet
06:26 AM Bug #2604: 23. County and state pulldowns
seems to be fixed Robert Peet
06:08 AM Bug #2783: Tomcat crashes -- ability to support multiple users needs verfication
fixed Robert Peet
06:08 AM Bug #2783: Tomcat crashes -- ability to support multiple users needs verfication
problem had to do with the dynamic pick-lists
No fixed
Robert Peet
06:06 AM Bug #2586: 5. Document the source of data for USDA PLANTS
ok Robert Peet
06:05 AM Bug #2586: 5. Document the source of data for USDA PLANTS
no changes needed at this time Robert Peet
05:12 AM Bug #2781: Provide download of concept relationships for a taxon
fixed Robert Peet

03/02/2007

03:19 PM Bug #2787: add entry_stems.isPlanted to interface?
Need to add this into the interface somehow, if we decide to regularly support this. Radio options between: all stem... Michael Lee
03:13 PM Bug #2787: add entry_stems.isPlanted to interface?
detecting and combining duplicates works, as does moving it over to the unfolded (treeDataBig/Sml). Michael Lee
02:46 PM Bug #2787: add entry_stems.isPlanted to interface?
fixing the various cases in stem data also needs to take this into account. Also, make sure the unknownSp field is t... Michael Lee
02:43 PM Bug #2787: add entry_stems.isPlanted to interface?
And that the fields in the database match each other correctly with Z_FieldDEsc Michael Lee
02:43 PM Bug #2787 (Resolved): add entry_stems.isPlanted to interface?
I added this field and need to make sure everything works nicely with it, specifically, the S module, detecting and c... Michael Lee

03/01/2007

02:50 PM Bug #2786 (Resolved): Need to add a "planted" field for Entry and Archive database
The problem is that at least once stems have been sampled that were planted. In any case, we should clearly mark pla... Michael Lee

02/28/2007

07:25 PM Bug #2784 (Closed): Community tab should be based on Weakley taxa and not nominals
In theory, the names in the CV database follow Weakley. Therefore, there is no reason to show communnities in which ... Robert Peet
07:13 PM Bug #2766: Add simple and full reference details and eliminate letter codes
fixed Robert Peet
07:04 PM Bug #2763: Misplaced determiniation data for specimens
fixed Robert Peet
05:50 PM Bug #2763: Misplaced determiniation data for specimens
fixed xianhua liu
06:51 PM Bug #2637: RAB records of nominal variety occurrences have incomplete name
You completely misunderstand this bug. Let's start over. Perhaps you are confusing logical mapping with physical map... Robert Peet
05:19 PM Bug #2637: RAB records of nominal variety occurrences have incomplete name
Let consider Ilex longipes example.
First of all we have following relationships:
1. Ilex longipes (Weakley 2005) ...
xianhua liu
06:24 PM Bug #2783 (Closed): Tomcat crashes -- ability to support multiple users needs verfication
As soon as I advertised the website across the CVS and rare_flora listservs, tomcat started crashing a couple times a... Robert Peet

02/27/2007

07:59 PM Bug #2766: Add simple and full reference details and eliminate letter codes
Fixed.
1. added the note at the top of the relationship list
2. fixed bug in showing simple reference for 'C'
3. fix...
xianhua liu
07:19 PM Bug #2781: Provide download of concept relationships for a taxon
fixed xianhua liu

02/26/2007

10:21 AM Bug #2782: Add names of synonyms to the typing helper list
fixed Robert Peet

02/25/2007

12:20 PM Bug #2782: Add names of synonyms to the typing helper list
Fixed. Added ajax-based auto-completion dropdown list, which retrieves data dynamically from the database based on us... xianhua liu

02/23/2007

04:27 AM Bug #2782 (Closed): Add names of synonyms to the typing helper list
At present when you start to type a name to search by taxon, suggestions are offered that can be selected to avoid ad... Robert Peet
04:21 AM Bug #2781 (Closed): Provide download of concept relationships for a taxon
Add a relationships option to the download tab. This should provide a file with column equal to
Focal name (eg We...
Robert Peet
04:13 AM Bug #2766: Add simple and full reference details and eliminate letter codes
Need to add explanitory text on relationships page below tabs and above the listed relationships that states "Move cu... Robert Peet
06:56 PM Bug #2766: Add simple and full reference details and eliminate letter codes
fixed. But x,y,z and other placeholder sources still show up as bare letters. I wonder if Alan Weakley should be the ... xianhua liu
04:56 PM Bug #2767: Adjust colors on maps
fixed xianhua liu

02/15/2007

03:30 PM Bug #2778 (Resolved): Need better markers for empty plot vs no stems here.
Need better linking between forms, including options for saying "no natural stems sampled" (change to level 1) or "no... Michael Lee
03:19 PM Bug #2776: Need some queries to help us summarize issues for contractors
better for project summary pasting into a new document (text):
SELECT [projectName] & " (ID " & [entry_projectCode] ...
Michael Lee
04:10 PM Bug #2776: Need some queries to help us summarize issues for contractors
Might be nice to have a query that reads out in English what the problems are and where with errors so I can more eas... Michael Lee
01:00 PM Bug #2777 (Resolved): add to interface: Coordinates need more metadata
VegBank appears to lack a place for saying what kind of coordinates are in AuthorE and AuthorN. I thought this was s... Michael Lee

02/14/2007

02:33 PM Bug #2776 (Resolved): Need some queries to help us summarize issues for contractors
Need a naming scheme (qa_quick)?
A simple summary by project:
SELECT project.projectName, project.entry_projectCo...
Michael Lee

02/13/2007

03:44 PM Bug #2774: RETEST: errors in individual stem migration
retested migration and it works to my satisfaction. Michael Lee
06:02 PM Bug #2774: RETEST: errors in individual stem migration
(In reply to comment #0)
>
> FIXED: Diameter was reduced by 0.5, something that is only needed with the classes.
>
...
Michael Lee
05:21 PM Bug #2774: RETEST: errors in individual stem migration
*** Bug 2761 has been marked as a duplicate of this bug. *** Michael Lee
05:16 PM Bug #2774 (Resolved): RETEST: errors in individual stem migration
There are errors!
Diameter was reduced by 0.5, something that is only needed with the classes.
Damage didn't mi...
Michael Lee
05:49 PM Bug #2772: DBA: doesn't read planted stems when calculating plots without data
chk_lackdata_stems new SQL:
SELECT observation.PROJECT_ID, entry_plots_stems.plotID, observation.authorObsCode AS Pl...
Michael Lee
04:39 PM Bug #2772 (Resolved): DBA: doesn't read planted stems when calculating plots without data
plots without data need ot really have no data: no planted and no natural stems. Michael Lee
05:45 PM Bug #2773: function attempt to update nulls badly
better yet, If Not IsNull(!ObsBasalArea) Then
doens't even run sql if null then.
Michael Lee
04:46 PM Bug #2773 (Resolved): function attempt to update nulls badly
these functions try to update nulls to values that can be null, throwing off the SQL:
sas_updateTaxonImportanceCalcF...
Michael Lee
05:22 PM Bug #2760: add Quick fix for common errors
back to new, not assigned Michael Lee
05:21 PM Bug #2761: DBA screens not working well with smaller stems
oops, added this twice. Though it is a large enough error that it could justify two bugs.
*** This bug has been mar...
Michael Lee

02/12/2007

02:35 PM Bug #2771 (Resolved): implement more sanity Checks : herbs
More sanity checks will ensure that herbs migrated as we thought they would. This currently exists more for stems, b... Michael Lee
02:33 PM Bug #2770 (Resolved): Finish the export DB function for level 5 data
A preliminary export function exists that creates a new database after migration of level 5 data in the Entry databas... Michael Lee
09:33 PM Bug #2754: X-IL record does not appear on map; Need category for misc records

1. The X-IL record appears in specimens but not on the map.
Robert Peet
09:28 PM Bug #2767 (Closed): Adjust colors on maps
Current colors New colors
Red Dark: 255-0-0 (0-100-100) OK
Red Light: 255-128-12...
Robert Peet
08:40 PM Bug #2684: Miscellaneous literature records for distribution
We need for orange and green check boxes by the maps, a generic category for the many possible small but important li... Robert Peet
08:16 PM Bug #2602: Document concept references in Weakley flora
Jess Long has now completed matching the letters with references. As soon as Alan resolves the problematic case Bob ... Robert Peet
08:13 PM Bug #2766: Add simple and full reference details and eliminate letter codes
This bug will allow us to exploit the resolution of bug 2602, which is now nearly complete owning to the work of Jess... Robert Peet

02/11/2007

01:25 PM Bug #2766 (Closed): Add simple and full reference details and eliminate letter codes
Redesign the website so that the uninformative letter-code references to literature is replaced by a simple reference... Robert Peet

02/08/2007

09:34 AM Bug #2763 (Closed): Misplaced determiniation data for specimens
When one examines the details of a specimen, the information on determinations appears under the heading of cultivate... Robert Peet

02/07/2007

07:28 AM Bug #2609: Erroneous assignment of ambiguous status
I seem to have expressed myself poorly in comment #5. I will try again so summarize the situation.
This is largely ...
Robert Peet
04:59 PM Bug #2609: Erroneous assignment of ambiguous status
Why NCSU Acer negundo specimens are ambiguous?
1) Acer negundo Weakley < Acer negundo nominal
2) NCSU follows...
xianhua liu
07:53 PM Bug #2757: Concept relationships in county clickover need reordering
fixed
please check it.
xianhua liu
06:04 PM Bug #2639: Inferred relationships too broad
Fixed
1. changed the inferring rule to allow C.g. (Weakley) < C.g. (FNA) and other relationships under the similar s...
xianhua liu
05:21 PM Bug #2639: Inferred relationships too broad
[As an aside, another and more difficult problem is the inferred relationship
C.g. (Weakley) < C. ovalis (nominal)
Th...
xianhua liu

02/06/2007

10:00 PM Bug #2762 (Resolved): Add "Ignore this Error" to logical error checking
When you check for errors, there can be some warnings or extenuating circumstances under which you can live with cert... Michael Lee
09:39 PM Bug #2759: Importing from self causes big problems
rereleasing 2.0.4 since I havent told anyone about it anyway. Michael Lee
09:31 PM Bug #2759: Importing from self causes big problems
fix:
If Dir(strDBLoc) <> "" Then
'have a database, import data into this
'check to be sure it isn't THIS d...
Michael Lee
04:10 PM Bug #2761: DBA screens not working well with smaller stems
individual stem plots are not unfolding into the archive properly either. Need to pull in the unique species over to... Michael Lee
04:06 PM Bug #2761 (Resolved): DBA screens not working well with smaller stems
the sanity checks are only working for larger stems, not indiv. Michael Lee

02/05/2007

03:54 PM Bug #2760: add Quick fix for common errors
fix no date in stems:
UPDATE entry_plots_stems INNER JOIN observation ON entry_plots_stems.plotID = observation.OBSER...
Michael Lee
03:53 PM Bug #2760: add Quick fix for common errors
Fix negative long:
UPDATE observation SET observation.authorE = "-" & [authorE]
WHERE (((Left(Trim([authorE]),1))<>"-...
Michael Lee
03:50 PM Bug #2760 (New): add Quick fix for common errors
need a quick fix for longitude is positive
also for filling in default of 10cm for minimum stem size.
Michael Lee
03:47 PM Bug #2759 (Resolved): Importing from self causes big problems
Importing from same database is possible, but shouldn't be. Michael Lee
09:08 PM Bug #2753: Apostrophe in specimen list appears as &apos;
fixed Robert Peet
09:08 PM Bug #2741: more clearly separate the ambiguous records
fixed Robert Peet
09:07 PM Bug #2740: Add ispecies link to other sources tab
fixed Robert Peet
09:07 PM Bug #2654: Selection box for sources for county records
fixed Robert Peet
09:07 PM Bug #2654: Selection box for sources for county records
fixed Robert Peet
09:04 PM Bug #2640: Identify USDA species without county distribution where other spp in genus have distribution
reassign to Bob Peet to resolve based on data being collected by Jeff Ott. Robert Peet
09:00 PM Bug #2757 (Closed): Concept relationships in county clickover need reordering
Note that if you map Dendrolycopodium hickeyi and then click on Jackson county, you get:
NCU: Lycopodium hickeyi:...
Robert Peet
08:53 PM Bug #2754: X-IL record does not appear on map; Need category for misc records
I tired and it seems to have failed.
The one IL taxon I know is Lycopodium hickeyi. I see two problems.
1) I searc...
Robert Peet
08:44 PM Bug #2639: Inferred relationships too broad
We are making progress, but new problems keep appearing. Let's continue with the Carya glabra example.
There is an ...
Robert Peet
 

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