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From 12/25/2007 to 01/23/2008

01/24/2008

06:20 PM Bug #3099 (Resolved): GetDocumentationAction.java needs to be moved into pII source
Rather than maintain a copy of this class in the src/exp directory, it should be included in in the ptolemy project. ... ben leinfelder
06:18 PM Bug #3094: File keyboard shortcuts use ctrl key instead of apple key on Mac
The Accelerators for the File Menu for OS X, i.e.
* Open File
* Save
* Print
* Close
have been fixed.
Configur...
Derik Barseghian
06:13 PM Bug #3053: Multiple Documentation windows not possible
Committed changes to:
src/exp/ptolemy/vergil/basic GetDocumentationAction.java
configs/ptolemy/configs/kepler configu...
ben leinfelder
04:55 PM Bug #3093: Unit test org.nddp.TestCollectionIOPort does not compile
I added (empty) addInitializable() and removeInitializable() methods required by the ptolemy.actor.Initializable inte... Timothy McPhillips
04:51 PM Bug #3091: Warnings building org.nddp.DataTypes
I added two type-casts suggested by the compiler, and this eliminated the warnings. Timothy McPhillips

01/23/2008

03:47 PM Bug #1334: need installer for kepler
An open source installer package is made up of several packages, especially for use on Windows OSs. The various steps... Dan Higgins
03:27 PM Bug #3053: Multiple Documentation windows not possible
Change to allow multiple documentation windows at once would be in the pII source:
ptolemy.vergil.basic.GetDocumentat...
ben leinfelder
02:03 PM Bug #3053: Multiple Documentation windows not possible
taking a stab at this for bug day... ben leinfelder
02:25 PM Bug #3098: Cannot drag SampleDelay actor onto canvas
Was a problem with my checkout. Daniel Crawl
12:14 PM Bug #3098: Cannot drag SampleDelay actor onto canvas
Dragging SampleDelay actor works for me under Windows with no error message at least immediately after startup Dan Higgins
11:58 AM Bug #3098 (Resolved): Cannot drag SampleDelay actor onto canvas
Dragging SampleDelay onto canvas brings up an error message:
Cannot create entity without a class name. in [extern...
Daniel Crawl
01:18 PM Bug #2490: Get ecogrid endpoints from Ecogrid registry
Refreshing the list of available services is working nicely locally - there's even an option to retain the existing (... ben leinfelder
01:04 PM Bug #3083: Need sample CommandLine workflows for Windows
Discovered the the problem could be reproduced when kepler was launched from kepler.bat or kepler.sh. Using the comma... Dan Higgins
11:11 AM Bug #3083: Need sample CommandLine workflows for Windows
Works for me under Windows and MacOSX Dan Higgins
10:42 AM Bug #3083: Need sample CommandLine workflows for Windows
I'm having trouble getting the CommandLine1 workflow to run on my PC/the latest nightly build (20081323). The workflo... Kirsten Menger-Anderson
12:14 PM Bug #3097: incorrect classpath in generated ptexecute.sh and momlexecute.sh
ClassPathHacker is the name given by the author to his class for dynamic classpath additions. Using the authors choic... Dan Higgins
11:37 AM Bug #3097: incorrect classpath in generated ptexecute.sh and momlexecute.sh
A class with the name 'ClassPathHacker' worries me a bit. I think we need a robust class loader that can work under a... Matt Jones
11:27 AM Bug #3097 (Resolved): incorrect classpath in generated ptexecute.sh and momlexecute.sh
The scripts ptexecute.sh and momlexecute.sh generated by build.xml (v1.366)
do not have the jars in $KEPLER/lib/jar/...
Daniel Crawl
11:12 AM Bug #2933: Query Builder comparisons for strings, dates do not work
This bug is closed and new bug to handle date type in data manager library will be added. Jing Tao
05:57 PM Bug #2933: Query Builder comparisons for strings, dates do not work
Dan tried to string comparison and it works for him. We talked this bug and think to close it in Kepler and add new b... Jing Tao
11:05 AM Bug #3094: File keyboard shortcuts use ctrl key instead of apple key on Mac
I'll work on this for bug day today. Derik Barseghian
05:43 PM Bug #3094: File keyboard shortcuts use ctrl key instead of apple key on Mac
The target design for menu and tool bars is here:
http://kepler-project.org/Wiki.jsp?page=MenuAndToolBarReDesign
He...
Shawn Bowers
05:40 PM Bug #3094 (Resolved): File keyboard shortcuts use ctrl key instead of apple key on Mac
Unlike in View and Edit, File shortcuts use ^Key (ctrl+Key) instead of Apple^Key. These shortcuts include:
* Open...
Shawn Bowers
10:57 AM Bug #3090: ASC2RAWTest demo workflow error
Cleaned up paths and changed the datasource to DirectoryListing. Workflow now executes on multiple platforms Dan Higgins
04:18 PM Bug #3090 (Resolved): ASC2RAWTest demo workflow error
When I try to run this workflow I get the java exception:
Cannot open file or URL in .ASC2RAWTest.Layer List Read...
Shawn Bowers
10:03 AM Bug #3092: sampling_occurrenceData_ R.xml demo workflow
changed file path to use propert("KEPLER") for cross platform comaptibility Dan Higgins
04:49 PM Bug #3092 (Resolved): sampling_occurrenceData_ R.xml demo workflow
This demo workflow does not run properly because a hard-coded path is used for the file. Shawn Bowers
08:46 AM Bug #3095 (New): add data mining actors (weka) and cheminformatics actors
Joseph Maria requested the incorporation of data mining actors based on WEKA and cheminformatics actors based on CDK.... Matt Jones
04:57 PM Bug #3093 (Resolved): Unit test org.nddp.TestCollectionIOPort does not compile
The JUnit test org.nddp.TestCollectionIOPort does not compile, and has been renamed to TestCollectionIOPort.javaDISAB... Timothy McPhillips
04:31 PM Bug #3091 (Resolved): Warnings building org.nddp.DataTypes
Building Kepler yields two warnings with the message, "non-varargs call of varargs method with inexact argument type ... Timothy McPhillips
04:12 PM Bug #3089 (Resolved): Actor port properties lost after saving to library
If I select an actor (e.g., Garp Prediction), add a semantic type to one of its input ports, and save it back to the ... Shawn Bowers

01/22/2008

03:54 PM Bug #3086: Error with kepler20080122.zip version (PTII?)
Problem now fixed with updated PTII Dan Higgins
02:20 PM Bug #3086: Error with kepler20080122.zip version (PTII?)
There was a change in diva.canvas.BasicZList.java (in PTII) on Jan 22 that is the apparent cause.
'throws NoSuchEleme...
Dan Higgins
01:54 PM Bug #3086: Error with kepler20080122.zip version (PTII?)
My bad. I was fixing FindBugs warnings.
Man-kit (Jackie) Leung fixed this in the
Ptolemy II tree.
I just checked in n...
Christopher Brooks
01:43 PM Bug #3086 (Resolved): Error with kepler20080122.zip version (PTII?)
The nightly zipped version (kepler20080122) ends up having a recurring error shown in the terminal when the cursor is... Dan Higgins
03:53 PM Bug #3083: Need sample CommandLine workflows for Windows
Two new example CommandLine workflows added to $KEPLER/demos/getting-started. Dan Higgins
11:29 AM Bug #3083 (Resolved): Need sample CommandLine workflows for Windows
We need some simple examples of how to use the CommandLine actors especially for Windows systems. These should be in ... Dan Higgins
01:28 PM Bug #2493: actor repository tracking bug
the PutService for ecogrid-1.0.0 will include support for filenames. Metacat already handles this, so the download s... ben leinfelder
11:48 AM Bug #2493: actor repository tracking bug
This bug is currently blocked by 3084. Metacat and the grid interfaces need to be updated before this bug can be fix... Chad Berkley
11:59 AM Bug #3077: Querybuilder: condition "operator" and "criteria" are not being saved
This bug is duplicate to bug 3076.
In the OKAction.actionPeformed method in QBApp.java, a TableCellEditor.stopCellEd...
Jing Tao
11:59 AM Bug #3076: Need to hit 'Return" key to enter a Criteria in QueryBuilder
This bug is duplicate to bug 3077.
In the OKAction.actionPeformed method in QBApp.java, a TableCellEditor.stopCellEd...
Jing Tao
11:22 AM Bug #1334: need installer for kepler
Currently, the plan is to use the open source software Izpack and Launch4J for the next Kepler release. (also JarBund... Dan Higgins

01/21/2008

01:32 PM Bug #2490: Get ecogrid endpoints from Ecogrid registry
As part of the upcoming 1.0.0 release [candidate], there are some substantial changes to the SEEK ecogrid and registr... ben leinfelder

01/19/2008

04:08 PM Bug #3078 (Resolved): No documentation for the 'SSH to Execute' actor
No documentation appear for the 'SSH to Execute' actor (org.sdm.spa.Ssh2Exec) Dan Higgins

01/18/2008

01:39 PM Bug #3077: Querybuilder: condition "operator" and "criteria" are not being saved
See bug #3076 Dan Higgins
01:39 PM Bug #3077: Querybuilder: condition "operator" and "criteria" are not being saved
from IRC:
[1:35pm] dan: when you add a criteria, you have to hit 'return'
[1:35pm] dan: just hitting OK won't work
[1...
ben leinfelder
12:12 PM Bug #3077 (Resolved): Querybuilder: condition "operator" and "criteria" are not being saved
When using the Querybuilder interface to construct queries on EML datasource actor, the condition[s] are not being sa... ben leinfelder
12:17 PM Bug #2933: Query Builder comparisons for strings, dates do not work
Although the transformation to the HSQL date format is a change, its probably going to be necessary for many systems.... Matt Jones
10:58 AM Bug #2933: Query Builder comparisons for strings, dates do not work
After changing the double quotes symbol to single quotes for string value in the query, the string comparison works n... Jing Tao
11:59 AM Bug #2940: Querybuilder with EMLDatasource actor does not return data
Ben tried the workflow and it worked for him too. Jing Tao
05:48 PM Bug #2940: Querybuilder with EMLDatasource actor does not return data
This problem wasn't caused by multiple tables or single table. Actually there is a space in attribute name cause the ... Jing Tao
11:25 AM Bug #2987: Kepler Library (actor repository) Issues
1 and 2 are fixed. the other two can be pushed to post 1.0 Chad Berkley
11:21 AM Bug #2978: saving to actor library from kepler no longer consistently works and port information is lost
This is now fixed. It was caused when the actor library was rebuilt after an update. the actorLibrary entity was se... Chad Berkley
10:20 AM Bug #2978: saving to actor library from kepler no longer consistently works and port information is lost
I've verified that dan's way of reproducing this works. Not sure what the issue is. Chad Berkley
11:07 AM Bug #3076 (Resolved): Need to hit 'Return" key to enter a Criteria in QueryBuilder
You must hit the return key to force an entry in the Criteria column of the QueryBuilder. If you just enter the crite... Dan Higgins
10:35 AM Bug #1836: data search and access problems via ecogrid
In 2008 workshop in New Mexico, the ecogrid search worked fine. Dan and I think we can close this bug. Jing Tao

01/17/2008

03:25 PM Bug #2490: Get ecogrid endpoints from Ecogrid registry
My first sentence in comment #1 "...optionally retrieved at startup" is wrong.
I had it occurring at startup for awh...
Derik Barseghian
02:28 PM Bug #2978: saving to actor library from kepler no longer consistently works and port information is lost
Problems can be seen if one follows this sequence:
1) Create a customized RExpression actor called Test1. Add to libr...
Dan Higgins
12:59 PM Bug #3075: Fold Top,java file in $KEPLER/src/exp/ dir into Ptolemy src
There is now a StringAttribute that set the default File|Open directory. So this file should be ready to move to PTII... Dan Higgins
12:10 PM Bug #3020: Exporting an actor to a kar does not include internal jars
When you export an actor to a kar file, it now asks you if you want to include the class file. if so, any associated... Chad Berkley

01/16/2008

03:59 PM Bug #3075 (Resolved): Fold Top,java file in $KEPLER/src/exp/ dir into Ptolemy src
Getting the FILE|Open menu to initially point to the $KEPLER/demos directory required a change to the PTII ptolemy/gu... Dan Higgins
03:58 PM Bug #2935: MetadataSource actor has no documentation
Documentation added to kar file moml Dan Higgins
03:48 PM Bug #3074 (Resolved): Code library installation issues
There are several issues with compiled code libraries (*.dll, *.so, *.dylib files) and where they must be located. Th... Dan Higgins
03:00 PM Bug #3073 (Resolved): Heartbeat function for slaves
When a slave registers itself with the earthgrid registry, there needs to be a way to tell if that slave still exists... Chad Berkley
02:58 PM Bug #3072 (Resolved): Security issues with distributed execution
See bug 3071. basically, the issues are that arbitrary code can be executed on the slaves so the utmost care needs t... Chad Berkley
02:56 PM Bug #3071: KAR files should be sent along with workflow to slaves
kar files should be signed so that the recipient at least can know that they are coming from who they should be. Chad Berkley
02:55 PM Bug #3071 (Resolved): KAR files should be sent along with workflow to slaves
When a master sends the workflow out to the slaves, it should also send any kar files that are needed for execution o... Chad Berkley
02:54 PM Bug #3070 (Resolved): Need access control GUI for slaves
Kepler needs a gui that allows a user to set access control rules for the local slave if it is running via the gui. Chad Berkley
02:53 PM Bug #3069 (Resolved): start slave from gui
A user should be able to start a slave controller from the gui instead of starting it from the command line. The com... Chad Berkley
02:51 PM Bug #3068 (Resolved): rmiregistry should be started programmatically
A user wanting to use the distributed system should not have to start the rmiregistry manually. kepler should start ... Chad Berkley
02:41 PM Bug #2880: Problem with some commands in command line actor
These commands now work using the CommandLineExec actor. Daniel Crawl
02:23 PM Bug #3026: Actor documentation does not appear in older workflows
This has been fixed in many of the GettingStarted demos but not in all the workflows in the demos directory. Dan Higgins
02:21 PM Bug #2914: Broken link on a web page
Note that missing doc is on Ilkay's server Dan Higgins
02:02 PM Bug #2990: file|open dialog should open in workflows directory
File|Open now initially opens into the $KEPLER/demos directory and remembers where the last location was (until shut-... Dan Higgins
01:25 PM Bug #2941: Command Line Exec Actor throws exception when given input on "arguments" port
This has been fixed (as of CommandLineExec.java v1.9) and I've added some workflows to better test this actor. Daniel Crawl
01:22 PM Bug #2531: The link from Kepler intro page to the Ptolemy quick links page is broken
Comment #3 about the Ptolemy links is certainly valid. There is the issue about making sure all the Ptolemy example w... Dan Higgins
01:11 PM Bug #2531: The link from Kepler intro page to the Ptolemy quick links page is broken
BTW - I think Kepler loses something by not having
the Ptolemy demos available. There are plenty of
demos and they ...
Christopher Brooks
12:01 PM Bug #2531: The link from Kepler intro page to the Ptolemy quick links page is broken
The broken link was removed from the intro page. Dan Higgins
10:50 AM Bug #3055: DarwinCoreDatasource actor does not work in wit output 'As Field'
As Field and As Row setting now iterate through all the rows of the data Dan Higgins
07:54 PM Bug #2978: saving to actor library from kepler no longer consistently works and port information is lost
Some preliminary tests indicated that the indicated problems occur when a second actor is added, after the first acto... Dan Higgins
04:43 PM Bug #2978: saving to actor library from kepler no longer consistently works and port information is lost
I'll have to check this out more. We just used this during the training workshop and this functionality worked well.... Chad Berkley
04:41 PM Bug #3066 (New): actor sdk
We need an SDK for building actors so that it is easier for people writing new java actors. the SDK would include a ... Chad Berkley

01/15/2008

02:44 PM Bug #2833: 'Open' problem with new DarwinCoreDataSource actor
Data is now downloaded when actor is first dragged to the work area, allowing access to the query builder Dan Higgins
12:48 PM Bug #3054: Importing a kar file claims actor is already cached
This is now fixed. Chad Berkley

01/11/2008

03:11 PM Bug #3063: CommandLineExec actor does not generate Exit code
Fixed the code so that it does return a '1' on the exitCode port when there is no error in executing the Command Line... Dan Higgins
01:41 PM Bug #3063 (Resolved): CommandLineExec actor does not generate Exit code
Supposedly, the CommandLineExec actor will generate a '1' on the exitCode output when the execution of the command li... Dan Higgins
01:02 PM Bug #3062 (New): Need ASC grid Utilities actor
Currently there are actors (developed for the ENM example) for working with ASC grids. Such spatial grid actors allow... Dan Higgins
12:06 PM Bug #3061 (Resolved): Need IPCC data by month
The ClimateFileProcessor and ClimateChangeFileProcessor actors are custom actors for reading IPCC climate data. The d... Dan Higgins
11:37 AM Bug #3056: unable to print output of Display actor
Both the Display window and the Text Editor have a 'Print...' menu item but it does not appear to do anything! Note t... Dan Higgins

01/09/2008

03:43 PM Bug #2939: Add ability to access password protected EarthGrid data from within Kepler
Changes to the registry (proposed)
I've augmented the existing EcogridRegEntryType with two elements:
-authentication...
ben leinfelder
11:04 AM Bug #3056 (Resolved): unable to print output of Display actor
The Display actor receives summary output from an RExpression actor. The summary displays perfectly, but does not pr... Kevin Drury
09:24 PM Bug #3055 (Resolved): DarwinCoreDatasource actor does not work in wit output 'As Field'
The DarwinCoreDataSource actor can have its output set to 'As Field'. However, it then appears not to iterate through... Dan Higgins

01/08/2008

12:41 PM Bug #3054 (Resolved): Importing a kar file claims actor is already cached
If you try to import a kar file containing a composite, sometimes an error is thrown that the actor already exists in... Chad Berkley
12:39 PM Bug #3053 (Resolved): Multiple Documentation windows not possible
Only a single documentation window can appear at a time and it remains the first one opened. Dan Higgins

01/07/2008

10:34 AM Bug #2967: Add a 'View data' menu to data source actors
The work done on bug #2966 has bled into this entry. They should probably just be consolidated into one bug. I've a... ben leinfelder

01/04/2008

12:12 PM Bug #2966: Add a 'Preview data' menu to data source actors
Added a recast() method to the PersistentTableModel implementation. This allows us to make an initial pass over the ... ben leinfelder
11:53 AM Bug #3052: Installer crashes with EXC_BAD_ACCESS
reportedly this occurred on OS X Tiger - 10.4.11
A check using OS X 10.5.1 worked OK;
Default Java should be 1.5 (...
Dan Higgins
04:58 PM Bug #3052 (Resolved): Installer crashes with EXC_BAD_ACCESS
Here's the start of the crash log:
Host Name: djbmac
Date/Time: 2008-01-04 13:20:10.617 +1300
OS Ver...
David Brooks

01/03/2008

04:29 PM Bug #2966: Add a 'Preview data' menu to data source actors
Ported the PersistentTableModel from Morpho to make use of the [already] ported version of PersistentVector. This su... ben leinfelder

01/02/2008

02:19 PM Bug #2833: 'Open' problem with new DarwinCoreDataSource actor
Uping the Severity because this bug causes a problem with DarwinCore actors newly dragged from the Data search panel.... Dan Higgins

12/31/2007

11:20 AM Bug #2966: Add a 'Preview data' menu to data source actors
Did an initial pass at this for EML200DataSource actor. Uses a JTable (with simple sorting). Have not tried it with... ben leinfelder

12/27/2007

11:20 AM Bug #2960: Change RExpression actor to use meaningful graphic file output names
By using getFullName() rather than getName() we can get the nested naming mentioned in the original comments for this... ben leinfelder
09:02 AM Bug #2961: Include option in EMLDatasource actor to use 'most recent' data
with the changes to how ecogrid can be searched using authentication credentials, i've also changed how the eml actor... ben leinfelder
 

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