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From 07/08/2010 to 08/06/2010

08/06/2010

04:09 PM Bug #5132 (Resolved): Connecting Workflow Run Manager to remote KAR store should prompt for credentials
We need an authentication and authorization mechanism for client kepler to access remote Provenance DB.
We can bor...
Jing Tao
03:30 PM Bug #5131 (Resolved): Authentication and authorization of Scheduler server
When a user tries to schedule a workflow through a kepler client, the scheduler server should check weather the user ... Jing Tao
03:11 PM Bug #5130 (Resolved): Need a login and logout interface for authenticating a user
When kepler client tries to schedule running a workflow or read data/report from remote Provenance DB, it should have... Jing Tao
02:21 PM Bug #5129 (In Progress): adding and removing configuration properties could be made easier
Now that we've shipped 2.0, if a developer wants to add a new configuration property to a config file, they must firs... Derik Barseghian

08/05/2010

04:32 PM Bug #5122: Develop an approval process for patches
Moving this to 2.2 target in case we want to discuss it further then. Derik Barseghian
04:21 PM Bug #5122: Develop an approval process for patches
To clarify, releasing a patch is a module-level event.
Each minor release will have its own branch in svn, and if two...
Derik Barseghian
04:28 PM Bug #5121: Provide a button to manually check for updates
Also, a button for toggling the automatic checking for updates on startup. Derik Barseghian
04:27 PM Bug #5082: Eclipse build fails because of invalid archive
I believe the bug is because of an extra space in one line of Eclipse.java. Now (at version 25232) ptII.properties.in... jianwu jianwu
04:26 PM Bug #5119: Make switching to a specific set of modules turn off automatic update feature
Since I'm working on the Import Dependent Modules feature, if you can simply provide an methods that I can call to ge... Derik Barseghian
04:23 PM Bug #5126: Determine whether we need to make installers for all minor releases
Today we decided not all minor releases require an installer be released. 2.1 will not have an installer, users will ... Derik Barseghian
04:14 PM Bug #5099: Import Dependent Modules for KAR doesn't work
These changes will be put into a new 2.1 branch, and removed from the 2.0 branch.
Yesterday I made more progress on ...
Derik Barseghian
03:52 PM Bug #5097: kepler.sh accepts a limited number of arguments
It is now fixed by changing bash and bat to:
kepler.sh:
java -classpath build-area/lib/ant.jar:kepler.jar org.kepler...
jianwu jianwu

08/04/2010

02:34 PM Bug #5124: Add/fix the ability to patch a suite
Fixed. David Welker
12:23 PM Bug #5124 (Resolved): Add/fix the ability to patch a suite
Currently, when you attempt to patch a suite using the instructions on the wiki, you get an error.
Example:
nce...
Sean Riddle
12:34 PM Bug #5127 (Resolved): Make a good way to publish a suite without changing a bunch of modules.txt files
As shown in the publishing instructions page on the wiki (https://kepler-project.org/developers/teams/build/documenta... Sean Riddle
12:29 PM Bug #5126 (Resolved): Determine whether we need to make installers for all minor releases
It seemed like a foregone conclusion that installers would be made for all minor and major releases. On the other han... Sean Riddle
12:27 PM Bug #5125 (Resolved): Add feature to do a one-step revert of a botched update from outside of Kepler
If a patch does not work correctly, it is possible that Kepler will fail to restart after the patch's installation. T... Sean Riddle
12:19 PM Bug #5123 (New): Create an ant task to display commits since last patch of a given module
Patches of modules are distributed as a zip containing the entire module. This means that someone can release a patch... Sean Riddle
12:16 PM Bug #5122 (New): Develop an approval process for patches
At present, releasing a patch releases all changes made to the applicable release branch. If not very many people are... Sean Riddle
12:11 PM Bug #5121 (Resolved): Provide a button to manually check for updates
At present, updates are detected at Kepler startup. Add a button or menu entry that allows the user to manually check... Sean Riddle
12:08 PM Bug #5120 (New): Provide a toggle for automatic updates
Add a menu option that allows the user to toggle between automatic checking for updates at startup and not. Sean Riddle
12:07 PM Bug #5119 (Resolved): Make switching to a specific set of modules turn off automatic update feature
Otherwise, as soon as someone restarts Kepler in a specific module configuration (that is not the most recent patched... Sean Riddle

08/03/2010

05:11 PM Bug #5116: add lat/lon to sensor metadata and use during import
Ilkay's work on metadata also indicated this information might be present in the SensorML metadata or EML metadata --... Matt Jones

08/02/2010

04:19 PM Bug #5116 (In Progress): add lat/lon to sensor metadata and use during import
The site layout in engineering workflows can reflect the physical layout of sensors at a deployment site. If lat/lon ... Daniel Crawl

07/30/2010

12:51 PM Bug #5115: enable system properties setting by updating kepler.sh or kepler.bat
It is fixed at version 25216. Now users can set properties by updating kepler.sh or kepler.bat by adding '-DProperty1... jianwu jianwu
12:35 PM Bug #5115 (Resolved): enable system properties setting by updating kepler.sh or kepler.bat
Originally reported by Chris Weed by asking how to launch kepler 2.0 with proxy settings(http://mercury.nceas.ucsb.ed... jianwu jianwu
08:13 PM Bug #5065: In shared or administrative installations, the ability to store modules.txt and extra modules locally. This way, the module manager will work smoothly on Windows without having to run as an administrator.
There are some serious complications to the solution of storing modules in multiple locations. This is not a "simple"... David Welker
05:41 PM Bug #5065: In shared or administrative installations, the ability to store modules.txt and extra modules locally. This way, the module manager will work smoothly on Windows without having to run as an administrator.
Running as administrator or other root-level accounts is likely to be a security issue, as it allows escalation of p... Matt Jones

07/29/2010

04:26 PM Bug #5065: In shared or administrative installations, the ability to store modules.txt and extra modules locally. This way, the module manager will work smoothly on Windows without having to run as an administrator.
I think another approach would work better for the problem of permissions on Windows. Moving modules to exist on mult... David Welker
01:40 PM Bug #5026: Error dialog pop up in RC3 when closing the ImageJ window after workflow execution.
Hey Sean, could we submit your patch to the IJ folks? If we upgrade to a new version of IJ it sounds like we might ha... Derik Barseghian
01:31 PM Bug #5026: Error dialog pop up in RC3 when closing the ImageJ window after workflow execution.
Fixed in r25200-1 in trunk. Now ImageJ configuration is stored in the persistent configuration for the common module.... Sean Riddle
06:51 PM Bug #5099: Import Dependent Modules for KAR doesn't work
Checked in a first pass at this into 2.0 in r25165. Not yet in trunk. Derik Barseghian

07/27/2010

03:45 PM Bug #5077: add real inputs and outputs to sensor actor
This is works now: the output port for sensor sample data, and two input ports for turning sensor on/off, and setting... Daniel Crawl

07/23/2010

09:43 AM Bug #4342: apple-extensions module on windows make Eclipse build difficult
I'm confirming that this is fixed in the kepler trunk under Windows with Eclipse.
However, as expected, the problem p...
Christopher Brooks
08:58 PM Bug #4342: apple-extensions module on windows make Eclipse build difficult
This should be fixed. The apple-extensions module should no longer download on Windows and should be ignored by the "... David Welker
08:59 PM Bug #5089: Replace operating system specific files with operating system specific modules.
I have implemented this as a fix for another bug. Closing. David Welker
06:34 PM Bug #5100: Report Layout designed in a composite actor window is lost
fixed in 2.0 at r25138 Derik Barseghian

07/22/2010

11:16 AM Bug #5096: Reporting on a RecordToken fails
I checked this fix into trunk at r25112 Derik Barseghian
11:13 AM Bug #5096: Reporting on a RecordToken fails
Yeah, it was assumed that each value of a RecordToken's subtokens were ArrayTokens -- casted without checking. Derik Barseghian
10:58 AM Bug #5096: Reporting on a RecordToken fails
was this because I was assuming there was more than one value per label (ie an ArrayToken)? ben leinfelder
11:16 AM Bug #5094: reports do not display matrix or xml token data
I checked this fix into trunk at r25112 Derik Barseghian
10:52 AM Bug #5069: The ability to create user manuals from a wiki that is continuously updated.
1 vote for LaTex:
Jim Regetz and I converted the Morpho user guide from Word to LaTex - seems much more manageable th...
ben leinfelder
06:18 PM Bug #5100: Report Layout designed in a composite actor window is lost
fixed in trunk at r25131. Need to merge into 2.0 Derik Barseghian

07/21/2010

04:51 PM Bug #5085: add table of contents to User's Guide
correct hours. jianwu jianwu
04:51 PM Bug #5085: add table of contents to User's Guide
Found more tasks than expected.
added TOC, page number and glossary section. fixed problems (document map, figure i...
jianwu jianwu
01:23 PM Bug #5101 (Resolved): Composite Actor windows show wrong title after workflow Rename
If you use the canvas Rename context menu to rename your workflow that contains composite actors, then Open Actor to ... Derik Barseghian
12:59 PM Bug #5100 (Resolved): Report Layout designed in a composite actor window is lost
When you have a workflow with a composite actor, and you open the composite actor, its contents appear in a new keple... Derik Barseghian
12:02 PM Bug #5099 (Resolved): Import Dependent Modules for KAR doesn't work
If you create a KAR that depends on modules that you're not currently running, the KAR icon in the Components pane sh... Derik Barseghian

07/20/2010

12:42 PM Bug #5096: Reporting on a RecordToken fails
Should be fixed in 2.0 at r25111.
Leaving open for testing and until checked into trunk.
Derik Barseghian
12:42 PM Bug #5094: reports do not display matrix or xml token data
Should be fixed in 2.0 at r25111.
Leaving open for testing and until checked into trunk.
Derik Barseghian

07/19/2010

03:40 PM Bug #5098: Save Archive (KAR)... will have exception when internet is not accessible.
This is my first time to see the error message. I think this feature worked on Kepler release candidate 1, 2 and 3. Jing Tao
03:30 PM Bug #5098 (Resolved): Save Archive (KAR)... will have exception when internet is not accessible.
Found by Chris Weed, I can reproduce it.
It happens when I right-click the actor, choose 'Save Archive (KAR)...' a...
jianwu jianwu

07/16/2010

01:07 PM Bug #5097: kepler.sh accepts a limited number of arguments
The arguments in kepler.sh were enumerated separately to handle arguments containing spaces. Any solution to this bug... Daniel Crawl
08:53 AM Bug #5097: kepler.sh accepts a limited number of arguments
Under /bin/sh in $PTII/bin/ptinvoke.in, we use "shift" to remove script specific
arguments and then use ${1+"$@"} to ...
Christopher Brooks
05:49 PM Bug #5097 (Resolved): kepler.sh accepts a limited number of arguments
kepler.sh accepts a limited number of arguments:
java -classpath build-area/lib/ant.jar:kepler.jar org.kepler.buil...
Derik Barseghian
12:35 PM Bug #4801: out of memory
Related to 5095, but a specific form of it. Derik will review and try to regenerate the bug as an extension to 5095. Ilkay Altintas
12:32 PM Bug #4642: memory usage & slowdowns
Seems similar to 5095. Derik will further analyze. Ilkay Altintas
08:49 AM Bug #4642: memory usage & slowdowns
See also bug 5095.
This bug should be primarily about performance, though memory management
will take part.
For inf...
Christopher Brooks
12:22 PM Bug #5095: test kepler and wrp for memory leaks
Derik will ask Sean for his experience with it and update the time estimate. Ilkay Altintas
08:44 AM Bug #5095: test kepler and wrp for memory leaks
How I've fixed memory leaks in the past is by writing Java test cases that
illustrate the bug and then using commerci...
Christopher Brooks

07/15/2010

10:55 AM Bug #5094: reports do not display matrix or xml token data
For the xml case, JDOM's XMLOutputter could be used to format the xml string. Daniel Crawl
06:14 PM Bug #5094: reports do not display matrix or xml token data
A simple fix is to add:
if (token instanceof MatrixToken) {
value = String.valueOf( ((MatrixToken)token)....
Derik Barseghian
05:49 PM Bug #5096 (Resolved): Reporting on a RecordToken fails
I'm trying to report on a record token. I make a simple workflow with {{data = 1, timestamps = 2}} pasted in a Consta... Derik Barseghian

07/14/2010

03:56 PM Bug #5095 (In Progress): test kepler and wrp for memory leaks
Oliver Soong reported having difficulties with memory leaks. There are two specific bugs about this, which I have se... Matt Jones
11:08 AM Bug #5094 (Resolved): reports do not display matrix or xml token data
Reports do not display the contents of matrix tokens. I'm attaching an example kar. Daniel Crawl
10:54 AM Bug #5093 (Resolved): module manager can leave kepler in broken or unexpected states
The module manager lets one "change to" individual modules instead of only suites. This can lead to a situation where... Daniel Crawl
10:38 AM Bug #4342: apple-extensions module on windows make Eclipse build difficult
We agreed this should be fixed for 2.1, so that kepler builds on all platforms (including windows) under Eclipse. Ho... Matt Jones
10:24 AM Bug #5069: The ability to create user manuals from a wiki that is continuously updated.
LT discussion: this is important, should probably be in a more standard markup like LaTeX or RST, and we can generate... Matt Jones
10:20 AM Bug #4118: Web Service Actor stored in Library
I am no longer able to reproduce this problem. If it still occurs for your web services, feel free to re-open. Daniel Crawl
10:04 AM Bug #5092: 2.0 user manual has no table of contents
Duplicate of bug 5085, which I'll target to 2.1 Christopher Brooks
09:37 AM Bug #5092 (Resolved): 2.0 user manual has no table of contents
The Kepler 2.0 User Manual has no table of contents or index, making it somewhat difficult to find things in the 386 ... Daniel Crawl

07/10/2010

05:22 PM Bug #5091 (Resolved): Dragging and dropping report layout items NPEs
Often when you're dragging and dropping a report item in the report designer, you get NPEs spewing on the console. Th... Derik Barseghian
05:15 PM Bug #5090 (New): Report Layout interface is confusing wrt locking and switching to old layouts
I'm unhappy with how the report layout 'lock edit mode' button works. By default, it's unlocked, and when you first c... Derik Barseghian

07/09/2010

04:30 PM Bug #5087: Image report items aren't shown when original image path doesn't resolve
Worked w/ Ben to fix this in r25094 on 2.0 branch.
Needs to be merged into trunk.
Derik Barseghian
01:43 PM Bug #5087: Image report items aren't shown when original image path doesn't resolve
The embedded images should (and I believe used to) be decoded from their base-64 characters and made into an image fi... ben leinfelder
01:19 PM Bug #5087 (Resolved): Image report items aren't shown when original image path doesn't resolve
Image report items aren't shown in the layout viewer or instance viewer when the original image path doesn't resolve.... Derik Barseghian
03:58 PM Bug #5089 (Resolved): Replace operating system specific files with operating system specific modules.
(14) Replace operating system specific files with operating system specific modules.
Currently, as illustrated by ...
David Welker
01:30 PM Bug #5088 (Resolved): Report designer gui difficult to use with greater than about 3-4 items
Report designer becomes difficult to use for reports with greater than about 3-4 items. Since the panel has such a la... Derik Barseghian
01:15 PM Bug #5086 (New): Report instance does not show in viewer after kar open
When opening a run kar that contains a report instance, the report instance viewer does not show the pdf. If a kar co... Derik Barseghian
01:09 PM Bug #4247: Application menu items sometimes disappear on OS X
(In reply to comment #10)
> I've search for possibly offending calls to showConfirmDialog and
> showMessageDialog (t...
Derik Barseghian
01:08 PM Bug #4247: Application menu items sometimes disappear on OS X
I've search for possibly offending calls to showConfirmDialog and showMessageDialog (those that use null as first ar... Derik Barseghian
10:01 AM Bug #5085 (Resolved): add table of contents to User's Guide
The 2.0 version of the User's Guide is missing its table of contents. Add one for the 2.1 release. Thhis was notice... Matt Jones

07/08/2010

02:26 PM Bug #5084 (Resolved): Allow test releases in the same location as actual releases.
(13) Allow test releases in the same location as actual releases.
Right now, the Kepler module manager can be conf...
David Welker
11:56 AM Bug #5083: possible to save a kar that loses the report layout
This is fixed in 2.0, but needs to be merged into trunk. Derik Barseghian
11:51 AM Bug #5083: possible to save a kar that loses the report layout
I've implemented a stopgap to this bug, with the following comment, in WorkflowManager so that reporting 2.0 can depe... Derik Barseghian
 

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