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From 05/14/2008 to 06/12/2008

06/09/2008

04:46 PM Bug #3368: security issue with skins: Short solution for 1.8.1 release:
in registry_installtion.html, a paragraph was added to change the owner and access... Jing Tao
04:44 PM Revision 3956 (metacat): Add this file to cvs head.: Jing Tao
04:43 PM Revision 3955 (metacat): Checked it into cvs head. Add a note to address the issue of replication.: Jing Tao
03:58 PM Revision 3945 (metacat): adjust height to accommodate previous change:: -add new SAEON nodes (requested by Judith) ben leinfelder
01:24 PM Revision 3944 (metacat): add new SAEON nodes (requested by Judith): ben leinfelder
12:02 PM Bug #3176: Verify existing token changes to skins: Verified that all skins are working Michael Daigle
11:59 AM Bug #3146: Include FGDC metadata in KNB and NCEAS skin search results: closing after conference call for 1.8.1rc2 ben leinfelder
09:31 AM Bug #3384 (Resolved): Implement and test turnkey installation on windows: Phase III of the turnkey installation project is the creation of turnkey installer for windows. Michael Daigle
09:23 AM Bug #3383 (In Progress): Create RPM/Deb installation utilities: Phase II of the turnkey installation project is the creation of an install utility for linux Michael Daigle
09:21 AM Bug #3382 (Resolved): Update documentation for all 1.9 changes: Update documentation including:
Release notes for 1.9
Online installation instructions
User/Dev help html pages Michael Daigle
09:20 AM Bug #3381 (Resolved): Create unit test code for 1.9 additions: Areas that need test code include (but are not limited to):
Properties configuration
Database updates
New utilit... Michael Daigle
09:16 AM Bug #3380 (Resolved): Create LSID server installation: Create the LSID server installation for 1.9. Need to decide whether that server will stay an ANT install for 1.9 or ... Michael Daigle
09:06 AM Bug #3379 (Resolved): Test ecogrid in turnkey installation: Make sure ecogrid works completely in turnkey installation. Michael Daigle
09:04 AM Bug #3378 (Resolved): Test turnkey installation against Tomcat 6: Make sure all code works against tomcat version 5 and 6. Michael Daigle
09:02 AM Bug #3377 (Resolved): Create ANT install target for developers: The ANT install targets will go away for 1.9 since the install will be handled by a utility that will drop a war file... Michael Daigle
08:59 AM Bug #3376 (Resolved): Add DB upgrade/install functionality to java code: Add the ability for db upgrade scripts to be run from within java. This will allow control of the db upgrade from wi... Michael Daigle
08:55 AM Bug #3375 (Resolved): Create a sorted properties utility: Create a class that will handle standard properties, but will maintain comments, spaces and property order. Michael Daigle
08:53 AM Bug #3374 (Resolved): Add authentication for configuration utility: The configuration utility should only be available via LDAP authentication of administrative users. The exception to... Michael Daigle
08:50 AM Bug #3373 (Resolved): Create skin specific configuration utility: Skins need to be configurable on an individual basis. The existing (new for 1.9) configuration utility needs to be m... Michael Daigle
08:47 AM Bug #3372 (Resolved): Integrate perl token replacement changes into token_replacement branch: Shaun made the perl token replacement changed for 1.9. These changes may affect the token replacement changes made i... Michael Daigle
08:45 AM Bug #3371 (Resolved): Modify confguration utility in metacat: To facilitate the turnkey installer, the internal metacat configuration utility that Matt J created must be upgraded. Michael Daigle
08:41 AM Bug #3370 (Resolved): Merge token replacement code onto HEAD: All 1.9 token replacement code has taken place on the token_replacement branch so far. Now that 1.8.1 has been relea... Michael Daigle

06/06/2008

12:44 PM Revision 3941 (metacat): Check into cvs head. Comment out an obsoleted code.: Jing Tao
12:40 PM Bug #3352: User at referral ldap server couldn't login if another referral server is down: This bug took a longer time than i thought to be fixed.
First I needed to installed two ldap servers and configured ... Jing Tao

06/05/2008

07:08 PM Revision 3938 (metacat): Check into CVS head. Add code to handle that referral server is down.: Jing Tao
04:26 PM Bug #3368 (Resolved): security issue with skins: The Perl code uses configuration files to get required settings. These settings are currently being served up by Tomc... Shaun Walbridge
01:46 PM Bug #3296: Replication: Many EML documents fail to replicate: We have reduced the number of EML documents that fail to replicate from the original 1016 down to 94. This was accomp... Duane Costa
01:18 PM Bug #3367 (New): Harvester stores passwords in clear text: The harvester stores the user's password in clear text in the database. Passwords need to be stored as md5s or use s... Chad Berkley

06/04/2008

03:45 PM Bug #3322: View interactive map Link at the bottom of the nrs and obfs does not work right: This could be improved by only querying the skins data. However the drop down list helps to only query the sites that... Callie Bowdish
03:43 PM Bug #3322: View interactive map Link at the bottom of the nrs and obfs does not work right: It looks like this is not a problem because the drop down list is specific for the skins. Callie Bowdish
03:37 PM Bug #3088: Inline Data does not work correctly without the <pre> tag: This bug has been fixed and tested. Callie Bowdish
03:28 PM Bug #3360: Many LDAP users not showing up in 'getprincipals' search: Short term solution has been done. Move to 1.9 Jing Tao
11:44 AM Bug #3170: ESA path in the email that is sent out does not work correctly: Added the document revision to link, now inserts updated documents correctly. Shaun Walbridge
11:43 AM Bug #3362: ESA path in data package acceptance email is incorrect: Added server prefix token, fixed in CVS Shaun Walbridge
11:34 AM Revision 3934 (metacat): Check into cvs head. Make a minor change.: Jing Tao

06/03/2008

05:26 PM Bug #3362 (Resolved): ESA path in data package acceptance email is incorrect: ESA email from moderator when the data package is accepted does not have the correct path to the data package.
---... Callie Bowdish
05:25 PM Revision 3930 (metacat): Check into cvs head. Change made base on Callie's suggestion.: Jing Tao
05:23 PM Bug #3170: ESA path in the email that is sent out does not work correctly: *** Bug 3168 has been marked as a duplicate of this bug. *** Callie Bowdish
05:18 PM Bug #3170: ESA path in the email that is sent out does not work correctly: There is a problem with the ESA path in the email that is sent out on the ESA metacat. The path does not include the ... Callie Bowdish
05:03 PM Bug #3170: ESA path in the email that is sent out does not work correctly: This is an example of an email that is sent from esa. When the link is used (with the user logged in on the browser) ... Callie Bowdish
05:23 PM Bug #3168: ESA problem with requesting revision: Same as bug 3170
*** This bug has been marked as a duplicate of bug 3170 *** Callie Bowdish
04:12 PM Bug #3360: Many LDAP users not showing up in 'getprincipals' search: Yes, its ok to increase the number. Lets do this now (set it to 'unlimited') in order to fix the problem in the shor... Matt Jones
04:00 PM Bug #3360: Many LDAP users not showing up in 'getprincipals' search: First, i thought it is a configuration in client side (metacat) of ldap. I tried to increase the count limitation:
ct... Jing Tao
03:27 PM Bug #3360: Many LDAP users not showing up in 'getprincipals' search: looks like there is an upper limit on the number of entries LDAP will return - and we are exceeding it.
--------
jin... ben leinfelder
12:07 PM Bug #3360 (In Progress): Many LDAP users not showing up in 'getprincipals' search: All the new FIRST advisory committee members (o=unaffiliated) are not showing up even though they have been included ... ben leinfelder
03:50 PM Revision 3928 (metacat): use the first (0) column as the index for questionId when selecting only a subset of the assessment data: ben leinfelder
09:26 AM Bug #3241: Update older invalidated eml201 document in Metacat: There is the possibility of older documents with illegal eml trying to be saved to Metacat. If these older versions ... Callie Bowdish

06/02/2008

05:19 PM Revision 3927 (metacat): add handling for qti metadata in resultset view: ben leinfelder
04:37 PM Bug #3354: The online form has problems with editing and maintaining the email address.: Fixed in 1.80.4.6 revision of register-dataset.cgi. Shaun Walbridge
02:38 PM Bug #3354 (Resolved): The online form has problems with editing and maintaining the email address.: The online form has problems with editing and maintaining the email address. When a data set is submitted and then an... Callie Bowdish
04:18 PM Revision 3925 (metacat): Checkinto cvs head. Add a paragraph to describe what we will do for illegitimate eml 201 schema.: Jing Tao
01:04 PM Bug #2176: Moderator UI and functionality for ESA: Here is the error that show up on the current production server 1.8.0 when using the email link after logging in.
Fai... Callie Bowdish
12:37 PM Bug #2176: Moderator UI and functionality for ESA: When checking ESA mail response for Metacat release I notice that the email path has problems on the revise document.... Callie Bowdish
09:34 AM Bug #3352 (Resolved): User at referral ldap server couldn't login if another referral server is down: Chris reported that the user at PISCO ldap server couldn't login when a referral server, LTER , is down. We fixed a b... Jing Tao

05/30/2008

04:44 PM Bug #3319: Edit feature doesn't work on documents with uneditable fields: Confirmed that multiple keywords did not work. Fixed in latest revision, the only form element which is in the regis... Shaun Walbridge
03:55 PM Bug #3319: Edit feature doesn't work on documents with uneditable fields: The edit feature does not work when keywords are added to the online form. After saving a data package using the onli... Callie Bowdish

05/29/2008

04:43 PM Revision 3922 (metacat): Check into cvs head. Remove "nodedata='document'" in xml_nodes and xml_nodes_revisions deleting query.: Jing Tao

05/28/2008

03:34 PM Revision 3918 (metacat): adjust xpaths to match changes to edml/qti output by FirstMorpho: ben leinfelder

05/27/2008

06:18 PM Revision 3917 (metacat): Check into cvs head. Modify the query of deleting xml_nodes_revisions table.: Jing Tao
04:54 PM Revision 3915 (metacat): Merging Perl changes into detokenization branch. Removes usage of tokens from all Perl and Perl Template Toolkit files, instead using pure Java .property files to manage settings. Basic path for eliminating .cfg files from Perl, and skin.config files from Java side. Backported changes from 1.8.1RC1 release.: walbridge
02:36 PM Bug #3331 (New): ldap redirect does not work correctly if one of the ldap servers are down: When one of the ldap servers are down the ldap redirect does not work correctly. One example is when a ldap account i... Callie Bowdish
11:15 AM Bug #2797: Character set (charset) problem when filling out form: Callie. Yeah, it is known that the morpho has problem to handle special character. This is not metacat bug. It is mor... Jing Tao
11:04 AM Bug #2797: Character set (charset) problem when filling out form: Generally this is working much better. However, today I tried pasting special characters and quotes using from Word a... Callie Bowdish
10:13 AM Bug #3322 (Resolved): View interactive map Link at the bottom of the nrs and obfs does not work right: This feature does not work on the test server. On the production server it searches all of the knb data sets. I think... Callie Bowdish

05/23/2008

05:48 PM Revision 3914 (metacat): Check into cvs head. Change version to 1.8.1: Jing Tao
05:11 PM Revision 3912 (metacat): Check into cvs head. Change the startup information from 1.8.0 to 1.8.1.: Jing Tao
05:07 PM Revision 3909 (metacat): checked into cvs head: replace eml-201-tag to eml-201-style-tag in getConversionalXSL.: Jing Tao
05:02 PM Bug #2644: The edit feature in the NCEAS Data Repoistory does not work: The crashing forms and keywords are fixed, the larger issues have been pushed into #3319. This is sufficiently fixed... Shaun Walbridge
05:00 PM Bug #3319 (Resolved): Edit feature doesn't work on documents with uneditable fields: Continuation of the problem mentioned in #2644: Documents uploaded through Morpho can't be edited through the web for... Shaun Walbridge
01:13 PM Bug #3218: nceas skin front page has font size differences: Fixed for 1.8.1 release, added single CSS class for td elements on index page. Shaun Walbridge
01:13 PM Bug #3218: nceas skin front page has font size differences: Fixed for 1.8.1 release, added single CSS class for td elements on index page. Shaun Walbridge
11:37 AM Bug #3014: Expose permission options for registry uploads: Fixed in 1.8.1 release, Javascript-based permissions option for public private. Ignoring the group issue for now. Shaun Walbridge

05/22/2008

04:22 PM Revision 3904 (metacat): Check into cvs head. Add a debug statement for printing out eml document: Jing Tao
02:19 PM Bug #2564: escaped "less than" in inlinedata causes invalid eml output: Here is some thought from Duane:
Hi Jing,
Thanks for looking into this further. This seems like a complex problem.
... Jing Tao
01:45 PM Bug #2564: escaped "less than" in inlinedata causes invalid eml output: I inserted an eml document into metacat and here is the content before
xerces parsing it:
<?xml version="1.0"?><eml:... Jing Tao

05/21/2008

12:55 PM Bug #3176: Verify existing token changes to skins: ESA site does not work correctly
The Moderator feature does not work the same as the production one. It is also very... Callie Bowdish
10:24 AM Task #3306 (Closed): NCEAS skin account creation needs more thought: After creating an unaffiliated account on the NCEAS skin "Create a new account" link you get the message below. It do... Callie Bowdish
09:04 AM Bug #3296: Replication: Many EML documents fail to replicate: Of the 1016 EML documents that fail to replicate from LNO to KNB, we identified 611 that are directly related to lite... Duane Costa

05/20/2008

10:45 AM Bug #3304: Replication: Timed replication failures occur twice instead of once: The bug was fixed.
The problem is in ReplicationHanlder.update() method.
Before,the code looks like:
XMLReader pars... Jing Tao

05/19/2008

06:46 PM Revision 3898 (metacat): Check into cvs head. In handle replication list method, parser will be intialized every time when it handles a list from another server.: Jing Tao
06:45 PM Revision 3897 (metacat): Check into head. Add a new method to get server name.: Jing Tao
05:32 PM Bug #3176: Verify existing token changes to skins: I think the reason is we didn't put the password into the .cfg files. Now I put them into esa.cfg and nrs.cfg.
Call... Jing Tao
03:49 PM Bug #3176: Verify existing token changes to skins: The login and form submission parts of the ESA, NRS, and OBFS are not working correctly. After submitting a form on t... Callie Bowdish
05:09 PM Bug #3304: Replication: Timed replication failures occur twice instead of once: *** Bug 3303 has been marked as a duplicate of this bug. *** Jing Tao
02:28 PM Bug #3304 (Resolved): Replication: Timed replication failures occur twice instead of once: This bug was first described in #3296, however I am opening a separate bug report for it because #3296 is more specif... Duane Costa
05:09 PM Bug #3303: In KNB server, metacat request two times replication if first replication failed.: It is duplicated one of 3304.
*** This bug has been marked as a duplicate of bug 3304 *** Jing Tao
02:27 PM Bug #3303 (Resolved): In KNB server, metacat request two times replication if first replication failed.: This is a subset of bug 3296.
Here is the description copied from there:
A secondary bug seems to be that each of t... Jing Tao
09:34 AM Bug #3259: Add fields used in Morpho search to the default indexPaths property: these have been added to the build.properties file in the 1.8.1 branch ben leinfelder
08:50 AM Revision 3881 (metacat): Added missing "/" from ascii-treeview.xsl path so documents can be viewed in treeview. (Ticket 3176): daigle
08:44 AM Revision 3880 (metacat): remove extra "/" from config-dir path (ticket 3176): daigle

05/16/2008

03:35 PM Bug #3296: Replication: Many EML documents fail to replicate: Some additional analysis of the replication errors:
A total of 1016 EML documents fail to replicate from LNO to KNB.... Duane Costa
11:22 AM Revision 3879 (metacat): Check into cvs head. Modify some query string.: Jing Tao
09:18 AM Bug #3176: Verify existing token changes to skins: callie: ldapweb.cgi wasn't installed in dev. I just intsalled it.
However, when i click the the link, there is still... Jing Tao
08:44 AM Bug #3176: Verify existing token changes to skins: login feature for nrs, esa, obfs has header problem with the create a new password, and reset password sections.
Whe... Callie Bowdish

05/15/2008

06:30 PM Revision 3877 (metacat): Check into cvs head. Remove the double quotes in muser, mpassword and et al.: Jing Tao
06:25 PM Revision 3875 (metacat): Check into cvs head. Add initialize option statment at the beginging of the class.: Jing Tao
05:43 PM Revision 3873 (metacat): Check into cvs head. Add the statement to initialize option.: Jing Tao
05:13 PM Revision 3870 (metacat): Check into cvs head. Move the initialize option statement to the begining of class.: Jing Tao
04:59 PM Revision 3868 (metacat): Checkinto cvs head.Move the initialize option statement to the begining of class, since user name is using getting option.: Jing Tao
11:04 AM Bug #3176: Verify existing token changes to skins: Looks like the register-dataset part needs looking at too. From the nrs skin a clicked on register data set after log... Callie Bowdish
10:04 AM Bug #3176: Verify existing token changes to skins: obfs, nrs, esa skin have problems with displaying the header, the South African skins need to be checked too.
Here i... Callie Bowdish

05/14/2008

02:59 PM Bug #3241: Update older invalidated eml201 document in Metacat: Margaret confirmed that there only one difference between the two versions of eml-resource.xsd;
Hi Jing -
I did the m... Jing Tao
02:57 PM Bug #3241: Update older invalidated eml201 document in Metacat: The new class will put into initialize method in MetacatServlet class. A new property named eml201_document_corrected... Jing Tao
02:51 PM Bug #3176: Verify existing token changes to skins: Some of the skins xml files were missing a leading "/" on the path to the acsii-treeview.xsl file. This means the de... Michael Daigle
02:46 PM Bug #3176: Verify existing token changes to skins: Removed the extra "/" in the config-dir path. This wasn't hurting anything, but it made it look like something didn'... Michael Daigle
02:50 PM Bug #3297: An error message happen during the metacat start up: This message was caused by put EML201DocumentCorrector in initialize method. In EML201DocumentCorrector class, a db c... Jing Tao
02:35 PM Bug #3239: metacat using illegitimate versions of EML schemas: following above plan and it is done. I wrote a script to compare schema file and the result shows now they are same t... Jing Tao
02:13 PM Revision 3864 (metacat): Check in to cvs head. Don't close db connection before returning the connection pool.: Jing Tao
01:29 PM Bug #3296: Replication: Many EML documents fail to replicate: Jing and I investigated further. Here's what we've learned so far:
(1) Many of the EML documents that fail to be rep... Duane Costa
11:01 AM Bug #3296: Replication: Many EML documents fail to replicate: it seems we need to correct local documents in lter. it has no relation to the release. So i postpone it to 1.9 Jing Tao
11:36 AM Bug #2517: Charset bug: > "less than" symbol does not display correctly: Change milestone to 1.8.1 Jing Tao
11:36 AM Bug #2797: Character set (charset) problem when filling out form: Change the milestone to 1.8.1 Jing Tao

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