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From 06/03/2008 to 07/02/2008

06/25/2008

11:15 AM Bug #3416 (New): ArrayIndexOutOfBoundsException in DBConnectionPool: The following error has appeared in the Tomcat log files at LTER several times:
Jun 25, 2008 9:55:54 AM org.apache... Duane Costa

06/24/2008

03:06 PM Bug #3415 (Resolved): metacat prints namespace attributes in opposite order of original document: When you serialize a document from metacat, the xmlns attributes come out in the opposite order from which the origin... Chad Berkley
09:43 AM Revision 4034 (metacat): save point before extending to allow merging across assessments: ben leinfelder

06/23/2008

03:00 PM Bug #3413: Sort order of returned resultsets needs to be standard: accidentally added a duplicate bug
*** This bug has been marked as a duplicate of bug 3397 *** Chad Berkley
02:59 PM Bug #3413 (Resolved): Sort order of returned resultsets needs to be standard: Metacat seems to sort the returned search results in different ways, which causes problems with paged query returns. ... Chad Berkley
03:00 PM Bug #3397: metacat needs server side sort mechanism: *** Bug 3413 has been marked as a duplicate of this bug. *** Chad Berkley
12:01 PM Revision 4032 (metacat): added functionality to make the document public after upload: berkley
09:35 AM Revision 4031 (metacat): increase left nav height for IE so that all the nodes are shown: (not the best in FF - but better than nothing) ben leinfelder
09:23 AM Bug #3412 (New): Kml file needs work- data set points icon and points "splitting" when clicked on: The kml file that can be downloading in the Data Catalog Map (Dowonload Goggle Earth KML) pages needs some improvemen... Callie Bowdish

06/20/2008

12:37 PM Revision 4014 (metacat): javascript now remembers queries and can display xml or html versions of documents: berkley
11:31 AM Revision 4013 (metacat): added style for the ontologies and made the search results remember their page: berkley

06/19/2008

03:15 PM Revision 4012 (metacat): updated stylesheets for ontologies: berkley
01:39 PM Bug #3319: Edit feature doesn't work on documents with uneditable fields: People need to be able to go back and upload a table, using the NCEAS online form after submitting the data set. Callie Bowdish
01:33 PM Bug #3403: xmlns without a : is serialized incorrectly: added an if statement to check for this condition. it now prints the xmlns out correctly. Chad Berkley
11:54 AM Bug #3403 (Resolved): xmlns without a : is serialized incorrectly: if you upload a document with an xmlns=xxx instead of xmlns:y=xxx to metacat, it uploads correctly, but when you read... Chad Berkley
01:33 PM Revision 4011 (metacat): fixed bug 3403: berkley
11:52 AM Bug #3402 (In Progress): internal dtds are not handled: XML documents with internal DTDs are not handled by metacat. The internal dtd entity callback in the sax parser is b... Chad Berkley

06/18/2008

04:30 PM Revision 4010 (metacat): Merge METACAT_1_8_1 to cvs head.: Jing Tao
01:26 PM Revision 4009 (metacat): Updated registry instructions to fix typo, include full dependency list to fetch with apt-get for Debian-based systems: walbridge
12:45 PM Bug #3396: Enable event notification feature: You might be interested in a project at the LTER Network Office to build an auditing system for all downloads, not ju... Margaret O'Brien
11:40 AM Bug #3396: Enable event notification feature: Here is another request regarding this. It is from Dan Gruener. "Also, we want to upload the datasets for NCEAS but s... Callie Bowdish
11:06 AM Revision 4008 (metacat): Add two files into cvs head.: Jing Tao

06/17/2008

01:29 PM Revision 4007 (metacat): merge 1.8.1 to head: ben leinfelder
01:16 PM Revision 4006 (metacat): merge 1.8.1 to head: ben leinfelder

06/16/2008

04:38 PM Bug #3397 (Resolved): metacat needs server side sort mechanism: in the past, we've been using xslt to sort search results going to a browser or client. This works fine until you us... Chad Berkley
03:41 PM Revision 4005 (metacat): got ajax calls working to display existing datasets in a paged table: berkley
03:35 PM Bug #2983: Update PostgreSQL from 7.4 to 8.2 in knb.msi: Step 7. Delete /usr/lib/pgsql/data by user postgres
rm data -rf
was changed to: mv data data-for-7.4 Jing Tao
03:34 PM Bug #2983: Update PostgreSQL from 7.4 to 8.2 in knb.msi: I have some issues about compat-postgresql-libs-3-2PGDG.rhel4.i686.rpm and compat-postgresql-libs-4-1PGDG.rhel4.i686.... Jing Tao
03:04 PM Bug #2983: Update PostgreSQL from 7.4 to 8.2 in knb.msi: In step 5, i first ran:
[root@knb postgres-8.3.3]# rpm -ef `rpm -qa | grep postgresql`
error: Failed dependencies:
... Jing Tao
01:22 PM Revision 4004 (metacat): removing unneeded files: berkley

06/14/2008

10:36 AM Bug #3396: Enable event notification feature: This is a great idea and a frequently requested feature. I think people would be more likely to archive their data if... Chris Jones
10:34 AM Bug #3396 (In Progress): Enable event notification feature: We would like to propose some changes to Metacat's event logging
feature to extend the functionality and provide a... Chris Jones

06/13/2008

11:17 AM Revision 4002 (metacat): cleaned up the upload functionality a bit.: berkley
10:51 AM Revision 4001 (metacat): changed message for successful upload, removed some clutter: berkley
10:33 AM Bug #3394: can't upload xml documents via multipart: I added functionality to metacat to allow this. the new action is called "insertmultipart". I haven't made it work ... Chad Berkley

06/12/2008

03:19 PM Revision 4000 (metacat): replacing the file with files from before I messed up this directory: berkley
03:18 PM Revision 3999 (metacat): rebuilding the knb skin from before the time where I messed it up: berkley
03:06 PM Revision 3998 (metacat): putting the sms skin in the sms directory for real: berkley
02:47 PM Revision 3997 (metacat): removing some sms that somehow got in this dir: berkley
02:42 PM Revision 3996 (metacat): you can now upload xml documents with the sms skin: berkley
02:41 PM Revision 3995 (metacat): added support to upload an xml document using multipart encoding. the enables better support for web interfaces that wish to use multipart to upload xml documents. the action is 'insertmultipart': berkley
01:03 PM Bug #3395 (Closed): allow private access via indexed "shortcut" url: Currently you can read documents using the url http://server.com/metacat/metacat/docid.1.1. This only works for publ... Chad Berkley
01:00 PM Bug #3394 (Resolved): can't upload xml documents via multipart: You can only upload a binary file via the action=upload functionality. This should be changed to allow xml documents... Chad Berkley
12:49 PM Revision 3994 (metacat): removing commits that I didn't mean to make: berkley
12:43 PM Revision 3993 (metacat): made it so that the error and success messages from a multipart upload can be transformed using xslt. also added upload functionality to the sms skin: berkley
10:35 AM Revision 3992 (metacat): Check into cvs head. Add a note there is no update sql needed to be run.: Jing Tao

06/11/2008

10:59 AM Bug #3021: ldapweb.cgi needs some usability improvements: parts 1 & 2 of this problem solved, part 1 in a 1.8.1 fix and part two in the 1.9 Token_Replacement branch. Shaun Walbridge
10:57 AM Revision 3989 (metacat): adding content to the skin and fixing some login errors: berkley

06/10/2008

05:54 PM Revision 3988 (metacat): Check into cvs head. Add "cfg=default" into the link to create/reset/forget password ldap account.: Jing Tao
04:25 PM Revision 3983 (metacat): got ajax calls working to do login/logout for the sms page: berkley
04:22 PM Revision 3982 (metacat): got ajax calls working to do login/logout for the sms page: berkley
02:06 PM Revision 3979 (metacat): Check into cvs head. Change CGI_PREFIX to CGI_URL: Jing Tao
01:30 PM Revision 3977 (metacat): check into cvs headd. change skin from default to knb.: Jing Tao
12:35 PM Revision 3975 (metacat): adding new skin for SEEK SMS.: berkley
11:34 AM Bug #3390: Data Catalog Map and IE 7.0.5730.11 brings up pop up windows that can be a problem: Please note the Manage Add-ons window does not pop up in the process, but disabling the XML DOM Document 5.0 will bri... Callie Bowdish
11:29 AM Bug #3390: Data Catalog Map and IE 7.0.5730.11 brings up pop up windows that can be a problem: Screen shot information for this bug Callie Bowdish
11:26 AM Bug #3390 (New): Data Catalog Map and IE 7.0.5730.11 brings up pop up windows that can be a problem: Data Catalog Map and IE (Internet Explorer 7.0.5730.11) brings up pop up windows that can be a problem. Most of them ... Callie Bowdish
11:05 AM Revision 3969 (metacat): do not include NCEAS projects in registry for saeon: ben leinfelder
11:04 AM Revision 3968 (metacat): uncomment the registry link in the header: ben leinfelder
10:39 AM Revision 3967 (metacat): increase the left nav once again (accommodate new SAEON nodes): ben leinfelder
10:19 AM Bug #3389: FGDC files do not go to the most recent version when the version number is not included: committed to both the 1.8.1 branch and HEAD ben leinfelder
09:33 AM Bug #3389: FGDC files do not go to the most recent version when the version number is not included: i've updated the fgdc style sheet such that the partial docid will display the datapackage download section ben leinfelder
08:53 AM Bug #3389 (Resolved): FGDC files do not go to the most recent version when the version number is not included: FGDC files do not go to the most recent version when the version number is not included. They also do not include the... Callie Bowdish
10:18 AM Revision 3966 (metacat): uncomment the registry link in the header: ben leinfelder
10:16 AM Revision 3965 (metacat): increase height of left nav for new SAEON nodes: ben leinfelder
09:56 AM Revision 3964 (metacat): use the docid from the metadata rather than the parameter when operating on the metadata document (in cases when the docid w/o revision is not given).: see bug #3389 ben leinfelder
09:25 AM Revision 3960 (metacat): use starts-with function for cases when the abbreviated docid is used to retrieve the metadata: see bug #3389 ben leinfelder

06/09/2008

04:46 PM Bug #3368: security issue with skins: Short solution for 1.8.1 release:
in registry_installtion.html, a paragraph was added to change the owner and access... Jing Tao
04:44 PM Revision 3956 (metacat): Add this file to cvs head.: Jing Tao
04:43 PM Revision 3955 (metacat): Checked it into cvs head. Add a note to address the issue of replication.: Jing Tao
03:58 PM Revision 3945 (metacat): adjust height to accommodate previous change:: -add new SAEON nodes (requested by Judith) ben leinfelder
01:24 PM Revision 3944 (metacat): add new SAEON nodes (requested by Judith): ben leinfelder
12:02 PM Bug #3176: Verify existing token changes to skins: Verified that all skins are working Michael Daigle
11:59 AM Bug #3146: Include FGDC metadata in KNB and NCEAS skin search results: closing after conference call for 1.8.1rc2 ben leinfelder
09:31 AM Bug #3384 (Resolved): Implement and test turnkey installation on windows: Phase III of the turnkey installation project is the creation of turnkey installer for windows. Michael Daigle
09:23 AM Bug #3383 (In Progress): Create RPM/Deb installation utilities: Phase II of the turnkey installation project is the creation of an install utility for linux Michael Daigle
09:21 AM Bug #3382 (Resolved): Update documentation for all 1.9 changes: Update documentation including:
Release notes for 1.9
Online installation instructions
User/Dev help html pages Michael Daigle
09:20 AM Bug #3381 (Resolved): Create unit test code for 1.9 additions: Areas that need test code include (but are not limited to):
Properties configuration
Database updates
New utilit... Michael Daigle
09:16 AM Bug #3380 (Resolved): Create LSID server installation: Create the LSID server installation for 1.9. Need to decide whether that server will stay an ANT install for 1.9 or ... Michael Daigle
09:06 AM Bug #3379 (Resolved): Test ecogrid in turnkey installation: Make sure ecogrid works completely in turnkey installation. Michael Daigle
09:04 AM Bug #3378 (Resolved): Test turnkey installation against Tomcat 6: Make sure all code works against tomcat version 5 and 6. Michael Daigle
09:02 AM Bug #3377 (Resolved): Create ANT install target for developers: The ANT install targets will go away for 1.9 since the install will be handled by a utility that will drop a war file... Michael Daigle
08:59 AM Bug #3376 (Resolved): Add DB upgrade/install functionality to java code: Add the ability for db upgrade scripts to be run from within java. This will allow control of the db upgrade from wi... Michael Daigle
08:55 AM Bug #3375 (Resolved): Create a sorted properties utility: Create a class that will handle standard properties, but will maintain comments, spaces and property order. Michael Daigle
08:53 AM Bug #3374 (Resolved): Add authentication for configuration utility: The configuration utility should only be available via LDAP authentication of administrative users. The exception to... Michael Daigle
08:50 AM Bug #3373 (Resolved): Create skin specific configuration utility: Skins need to be configurable on an individual basis. The existing (new for 1.9) configuration utility needs to be m... Michael Daigle
08:47 AM Bug #3372 (Resolved): Integrate perl token replacement changes into token_replacement branch: Shaun made the perl token replacement changed for 1.9. These changes may affect the token replacement changes made i... Michael Daigle
08:45 AM Bug #3371 (Resolved): Modify confguration utility in metacat: To facilitate the turnkey installer, the internal metacat configuration utility that Matt J created must be upgraded. Michael Daigle
08:41 AM Bug #3370 (Resolved): Merge token replacement code onto HEAD: All 1.9 token replacement code has taken place on the token_replacement branch so far. Now that 1.8.1 has been relea... Michael Daigle

06/06/2008

12:44 PM Revision 3941 (metacat): Check into cvs head. Comment out an obsoleted code.: Jing Tao
12:40 PM Bug #3352: User at referral ldap server couldn't login if another referral server is down: This bug took a longer time than i thought to be fixed.
First I needed to installed two ldap servers and configured ... Jing Tao

06/05/2008

07:08 PM Revision 3938 (metacat): Check into CVS head. Add code to handle that referral server is down.: Jing Tao
04:26 PM Bug #3368 (Resolved): security issue with skins: The Perl code uses configuration files to get required settings. These settings are currently being served up by Tomc... Shaun Walbridge
01:46 PM Bug #3296: Replication: Many EML documents fail to replicate: We have reduced the number of EML documents that fail to replicate from the original 1016 down to 94. This was accomp... Duane Costa
01:18 PM Bug #3367 (New): Harvester stores passwords in clear text: The harvester stores the user's password in clear text in the database. Passwords need to be stored as md5s or use s... Chad Berkley

06/04/2008

03:45 PM Bug #3322: View interactive map Link at the bottom of the nrs and obfs does not work right: This could be improved by only querying the skins data. However the drop down list helps to only query the sites that... Callie Bowdish
03:43 PM Bug #3322: View interactive map Link at the bottom of the nrs and obfs does not work right: It looks like this is not a problem because the drop down list is specific for the skins. Callie Bowdish
03:37 PM Bug #3088: Inline Data does not work correctly without the <pre> tag: This bug has been fixed and tested. Callie Bowdish
03:28 PM Bug #3360: Many LDAP users not showing up in 'getprincipals' search: Short term solution has been done. Move to 1.9 Jing Tao
11:44 AM Bug #3170: ESA path in the email that is sent out does not work correctly: Added the document revision to link, now inserts updated documents correctly. Shaun Walbridge
11:43 AM Bug #3362: ESA path in data package acceptance email is incorrect: Added server prefix token, fixed in CVS Shaun Walbridge
11:34 AM Revision 3934 (metacat): Check into cvs head. Make a minor change.: Jing Tao

06/03/2008

05:26 PM Bug #3362 (Resolved): ESA path in data package acceptance email is incorrect: ESA email from moderator when the data package is accepted does not have the correct path to the data package.
---... Callie Bowdish
05:25 PM Revision 3930 (metacat): Check into cvs head. Change made base on Callie's suggestion.: Jing Tao
05:23 PM Bug #3170: ESA path in the email that is sent out does not work correctly: *** Bug 3168 has been marked as a duplicate of this bug. *** Callie Bowdish
05:18 PM Bug #3170: ESA path in the email that is sent out does not work correctly: There is a problem with the ESA path in the email that is sent out on the ESA metacat. The path does not include the ... Callie Bowdish
05:03 PM Bug #3170: ESA path in the email that is sent out does not work correctly: This is an example of an email that is sent from esa. When the link is used (with the user logged in on the browser) ... Callie Bowdish
05:23 PM Bug #3168: ESA problem with requesting revision: Same as bug 3170
*** This bug has been marked as a duplicate of bug 3170 *** Callie Bowdish
04:12 PM Bug #3360: Many LDAP users not showing up in 'getprincipals' search: Yes, its ok to increase the number. Lets do this now (set it to 'unlimited') in order to fix the problem in the shor... Matt Jones
04:00 PM Bug #3360: Many LDAP users not showing up in 'getprincipals' search: First, i thought it is a configuration in client side (metacat) of ldap. I tried to increase the count limitation:
ct... Jing Tao
03:27 PM Bug #3360: Many LDAP users not showing up in 'getprincipals' search: looks like there is an upper limit on the number of entries LDAP will return - and we are exceeding it.
--------
jin... ben leinfelder
12:07 PM Bug #3360 (In Progress): Many LDAP users not showing up in 'getprincipals' search: All the new FIRST advisory committee members (o=unaffiliated) are not showing up even though they have been included ... ben leinfelder
03:50 PM Revision 3928 (metacat): use the first (0) column as the index for questionId when selecting only a subset of the assessment data: ben leinfelder
09:26 AM Bug #3241: Update older invalidated eml201 document in Metacat: There is the possibility of older documents with illegal eml trying to be saved to Metacat. If these older versions ... Callie Bowdish

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