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From 07/04/2010 to 08/02/2010

08/02/2010

05:11 PM Bug #5116: add lat/lon to sensor metadata and use during import
Ilkay's work on metadata also indicated this information might be present in the SensorML metadata or EML metadata --... Matt Jones
04:19 PM Bug #5116 (In Progress): add lat/lon to sensor metadata and use during import
The site layout in engineering workflows can reflect the physical layout of sensors at a deployment site. If lat/lon ... Daniel Crawl

07/30/2010

12:51 PM Bug #5115: enable system properties setting by updating kepler.sh or kepler.bat
It is fixed at version 25216. Now users can set properties by updating kepler.sh or kepler.bat by adding '-DProperty1... jianwu jianwu
12:35 PM Bug #5115 (Resolved): enable system properties setting by updating kepler.sh or kepler.bat
Originally reported by Chris Weed by asking how to launch kepler 2.0 with proxy settings(http://mercury.nceas.ucsb.ed... jianwu jianwu

07/29/2010

08:13 PM Bug #5065: In shared or administrative installations, the ability to store modules.txt and extra modules locally. This way, the module manager will work smoothly on Windows without having to run as an administrator.
There are some serious complications to the solution of storing modules in multiple locations. This is not a "simple"... David Welker
05:41 PM Bug #5065: In shared or administrative installations, the ability to store modules.txt and extra modules locally. This way, the module manager will work smoothly on Windows without having to run as an administrator.
Running as administrator or other root-level accounts is likely to be a security issue, as it allows escalation of p... Matt Jones
04:26 PM Bug #5065: In shared or administrative installations, the ability to store modules.txt and extra modules locally. This way, the module manager will work smoothly on Windows without having to run as an administrator.
I think another approach would work better for the problem of permissions on Windows. Moving modules to exist on mult... David Welker
01:40 PM Bug #5026: Error dialog pop up in RC3 when closing the ImageJ window after workflow execution.
Hey Sean, could we submit your patch to the IJ folks? If we upgrade to a new version of IJ it sounds like we might ha... Derik Barseghian
01:31 PM Bug #5026: Error dialog pop up in RC3 when closing the ImageJ window after workflow execution.
Fixed in r25200-1 in trunk. Now ImageJ configuration is stored in the persistent configuration for the common module.... Sean Riddle

07/28/2010

06:51 PM Bug #5099: Import Dependent Modules for KAR doesn't work
Checked in a first pass at this into 2.0 in r25165. Not yet in trunk. Derik Barseghian

07/27/2010

03:45 PM Bug #5077: add real inputs and outputs to sensor actor
This is works now: the output port for sensor sample data, and two input ports for turning sensor on/off, and setting... Daniel Crawl

07/23/2010

09:43 AM Bug #4342: apple-extensions module on windows make Eclipse build difficult
I'm confirming that this is fixed in the kepler trunk under Windows with Eclipse.
However, as expected, the problem p...
Christopher Brooks

07/22/2010

08:59 PM Bug #5089: Replace operating system specific files with operating system specific modules.
I have implemented this as a fix for another bug. Closing. David Welker
08:58 PM Bug #4342: apple-extensions module on windows make Eclipse build difficult
This should be fixed. The apple-extensions module should no longer download on Windows and should be ignored by the "... David Welker
06:34 PM Bug #5100: Report Layout designed in a composite actor window is lost
fixed in 2.0 at r25138 Derik Barseghian
11:16 AM Bug #5096: Reporting on a RecordToken fails
I checked this fix into trunk at r25112 Derik Barseghian
11:13 AM Bug #5096: Reporting on a RecordToken fails
Yeah, it was assumed that each value of a RecordToken's subtokens were ArrayTokens -- casted without checking. Derik Barseghian
10:58 AM Bug #5096: Reporting on a RecordToken fails
was this because I was assuming there was more than one value per label (ie an ArrayToken)? ben leinfelder
11:16 AM Bug #5094: reports do not display matrix or xml token data
I checked this fix into trunk at r25112 Derik Barseghian
10:52 AM Bug #5069: The ability to create user manuals from a wiki that is continuously updated.
1 vote for LaTex:
Jim Regetz and I converted the Morpho user guide from Word to LaTex - seems much more manageable th...
ben leinfelder

07/21/2010

06:18 PM Bug #5100: Report Layout designed in a composite actor window is lost
fixed in trunk at r25131. Need to merge into 2.0 Derik Barseghian
12:59 PM Bug #5100 (Resolved): Report Layout designed in a composite actor window is lost
When you have a workflow with a composite actor, and you open the composite actor, its contents appear in a new keple... Derik Barseghian
04:51 PM Bug #5085: add table of contents to User's Guide
correct hours. jianwu jianwu
04:51 PM Bug #5085: add table of contents to User's Guide
Found more tasks than expected.
added TOC, page number and glossary section. fixed problems (document map, figure i...
jianwu jianwu
01:23 PM Bug #5101 (Resolved): Composite Actor windows show wrong title after workflow Rename
If you use the canvas Rename context menu to rename your workflow that contains composite actors, then Open Actor to ... Derik Barseghian
12:02 PM Bug #5099 (Resolved): Import Dependent Modules for KAR doesn't work
If you create a KAR that depends on modules that you're not currently running, the KAR icon in the Components pane sh... Derik Barseghian

07/20/2010

12:42 PM Bug #5096: Reporting on a RecordToken fails
Should be fixed in 2.0 at r25111.
Leaving open for testing and until checked into trunk.
Derik Barseghian
12:42 PM Bug #5094: reports do not display matrix or xml token data
Should be fixed in 2.0 at r25111.
Leaving open for testing and until checked into trunk.
Derik Barseghian

07/19/2010

03:40 PM Bug #5098: Save Archive (KAR)... will have exception when internet is not accessible.
This is my first time to see the error message. I think this feature worked on Kepler release candidate 1, 2 and 3. Jing Tao
03:30 PM Bug #5098 (Resolved): Save Archive (KAR)... will have exception when internet is not accessible.
Found by Chris Weed, I can reproduce it.
It happens when I right-click the actor, choose 'Save Archive (KAR)...' a...
jianwu jianwu

07/16/2010

01:07 PM Bug #5097: kepler.sh accepts a limited number of arguments
The arguments in kepler.sh were enumerated separately to handle arguments containing spaces. Any solution to this bug... Daniel Crawl
08:53 AM Bug #5097: kepler.sh accepts a limited number of arguments
Under /bin/sh in $PTII/bin/ptinvoke.in, we use "shift" to remove script specific
arguments and then use ${1+"$@"} to ...
Christopher Brooks
12:35 PM Bug #4801: out of memory
Related to 5095, but a specific form of it. Derik will review and try to regenerate the bug as an extension to 5095. Ilkay Altintas
12:32 PM Bug #4642: memory usage & slowdowns
Seems similar to 5095. Derik will further analyze. Ilkay Altintas
08:49 AM Bug #4642: memory usage & slowdowns
See also bug 5095.
This bug should be primarily about performance, though memory management
will take part.
For inf...
Christopher Brooks
12:22 PM Bug #5095: test kepler and wrp for memory leaks
Derik will ask Sean for his experience with it and update the time estimate. Ilkay Altintas
08:44 AM Bug #5095: test kepler and wrp for memory leaks
How I've fixed memory leaks in the past is by writing Java test cases that
illustrate the bug and then using commerci...
Christopher Brooks

07/15/2010

05:49 PM Bug #5097 (Resolved): kepler.sh accepts a limited number of arguments
kepler.sh accepts a limited number of arguments:
java -classpath build-area/lib/ant.jar:kepler.jar org.kepler.buil...
Derik Barseghian
10:55 AM Bug #5094: reports do not display matrix or xml token data
For the xml case, JDOM's XMLOutputter could be used to format the xml string. Daniel Crawl

07/14/2010

06:14 PM Bug #5094: reports do not display matrix or xml token data
A simple fix is to add:
if (token instanceof MatrixToken) {
value = String.valueOf( ((MatrixToken)token)....
Derik Barseghian
11:08 AM Bug #5094 (Resolved): reports do not display matrix or xml token data
Reports do not display the contents of matrix tokens. I'm attaching an example kar. Daniel Crawl
05:49 PM Bug #5096 (Resolved): Reporting on a RecordToken fails
I'm trying to report on a record token. I make a simple workflow with {{data = 1, timestamps = 2}} pasted in a Consta... Derik Barseghian
03:56 PM Bug #5095 (In Progress): test kepler and wrp for memory leaks
Oliver Soong reported having difficulties with memory leaks. There are two specific bugs about this, which I have se... Matt Jones
10:54 AM Bug #5093 (Resolved): module manager can leave kepler in broken or unexpected states
The module manager lets one "change to" individual modules instead of only suites. This can lead to a situation where... Daniel Crawl
10:38 AM Bug #4342: apple-extensions module on windows make Eclipse build difficult
We agreed this should be fixed for 2.1, so that kepler builds on all platforms (including windows) under Eclipse. Ho... Matt Jones
10:24 AM Bug #5069: The ability to create user manuals from a wiki that is continuously updated.
LT discussion: this is important, should probably be in a more standard markup like LaTeX or RST, and we can generate... Matt Jones
10:20 AM Bug #4118: Web Service Actor stored in Library
I am no longer able to reproduce this problem. If it still occurs for your web services, feel free to re-open. Daniel Crawl
10:04 AM Bug #5092: 2.0 user manual has no table of contents
Duplicate of bug 5085, which I'll target to 2.1 Christopher Brooks
09:37 AM Bug #5092 (Resolved): 2.0 user manual has no table of contents
The Kepler 2.0 User Manual has no table of contents or index, making it somewhat difficult to find things in the 386 ... Daniel Crawl

07/09/2010

05:22 PM Bug #5091 (Resolved): Dragging and dropping report layout items NPEs
Often when you're dragging and dropping a report item in the report designer, you get NPEs spewing on the console. Th... Derik Barseghian
05:15 PM Bug #5090 (New): Report Layout interface is confusing wrt locking and switching to old layouts
I'm unhappy with how the report layout 'lock edit mode' button works. By default, it's unlocked, and when you first c... Derik Barseghian
04:30 PM Bug #5087: Image report items aren't shown when original image path doesn't resolve
Worked w/ Ben to fix this in r25094 on 2.0 branch.
Needs to be merged into trunk.
Derik Barseghian
01:43 PM Bug #5087: Image report items aren't shown when original image path doesn't resolve
The embedded images should (and I believe used to) be decoded from their base-64 characters and made into an image fi... ben leinfelder
01:19 PM Bug #5087 (Resolved): Image report items aren't shown when original image path doesn't resolve
Image report items aren't shown in the layout viewer or instance viewer when the original image path doesn't resolve.... Derik Barseghian
03:58 PM Bug #5089 (Resolved): Replace operating system specific files with operating system specific modules.
(14) Replace operating system specific files with operating system specific modules.
Currently, as illustrated by ...
David Welker
01:30 PM Bug #5088 (Resolved): Report designer gui difficult to use with greater than about 3-4 items
Report designer becomes difficult to use for reports with greater than about 3-4 items. Since the panel has such a la... Derik Barseghian
01:15 PM Bug #5086 (New): Report instance does not show in viewer after kar open
When opening a run kar that contains a report instance, the report instance viewer does not show the pdf. If a kar co... Derik Barseghian
01:09 PM Bug #4247: Application menu items sometimes disappear on OS X
(In reply to comment #10)
> I've search for possibly offending calls to showConfirmDialog and
> showMessageDialog (t...
Derik Barseghian
01:08 PM Bug #4247: Application menu items sometimes disappear on OS X
I've search for possibly offending calls to showConfirmDialog and showMessageDialog (those that use null as first ar... Derik Barseghian
10:01 AM Bug #5085 (Resolved): add table of contents to User's Guide
The 2.0 version of the User's Guide is missing its table of contents. Add one for the 2.1 release. Thhis was notice... Matt Jones

07/08/2010

02:26 PM Bug #5084 (Resolved): Allow test releases in the same location as actual releases.
(13) Allow test releases in the same location as actual releases.
Right now, the Kepler module manager can be conf...
David Welker
11:56 AM Bug #5083: possible to save a kar that loses the report layout
This is fixed in 2.0, but needs to be merged into trunk. Derik Barseghian
11:51 AM Bug #5083: possible to save a kar that loses the report layout
I've implemented a stopgap to this bug, with the following comment, in WorkflowManager so that reporting 2.0 can depe... Derik Barseghian

07/07/2010

06:36 PM Bug #5083 (Resolved): possible to save a kar that loses the report layout
This seems like a problem with the ObjectManager.
Scenario:
User A uses Save Archive to create test.kar, it conta...
Derik Barseghian
05:25 PM Bug #5082 (Resolved): Eclipse build fails because of invalid archive
Under Windows Server 2003, I was building the devel tree as per
the instructions at
https://kepler-project.org/deve...
Christopher Brooks
05:23 PM Bug #4191: Eclipse build is slow the first time "Copying resources to the output folder"
The bug is that build is slow the first time under Eclipse.
For me on an older Windows 2003 Server machine, I have ab...
Christopher Brooks
04:18 PM Bug #4943: RC5 Installer Tracking Bug
I'm closing this tracking bug because all the blockers for this bug
and 2.0.0 are fixed.
BTW - I find it easier to u...
Christopher Brooks
10:49 AM Bug #5071: Improve the installer so that it is automated instead of requiring so many manual steps. Also, develop streamlined release process so that minor releases 2.1, 2.2, etc. can be accomplished more rapidly.
Does this mean creating an installer or using the installer?
Creating an installer:
Bug 5027: Users should be able t...
Christopher Brooks
10:45 AM Bug #5051: Semantically annotate during Save Archive a workflow with remote data set Error
Okay, it is indeed fixed in the trunk and in the release branch. I tested the release, which did not work, but having... Sean Riddle
10:11 AM Bug #5051: Semantically annotate during Save Archive a workflow with remote data set Error
I'm pretty sure this is fixed. Will test briefly against trunk and release and close if so. Sean Riddle
10:37 AM Bug #5076: Minimize the number of files downloaded from the Ptolemy repository.
As per Kepler leadership discussion, moving this to 2.X.Y. Note that
we will have Kepler devel telcon to discuss 2.1...
Christopher Brooks
10:29 AM Bug #5072: Move the R module out of Kepler/CORE entirely.
As per Kepler leadership discussion, moving this to 2.2.0. Note that
we will have Kepler devel telcon to discuss 2.1...
Christopher Brooks
10:27 AM Bug #5068: Investigate jars (why they are necessary) and upgrade whenever possible.
As per Kepler leadership discussion, moving this to 2.X.Y. Note that
we will have Kepler devel telcon to discuss 2.1...
Christopher Brooks
10:26 AM Bug #5081: A system for adding and removing GUI menus.
Documenting our current system would take about 24 hrs.
Refactoring to a different system such as RCP would take mo...
Christopher Brooks
10:25 AM Bug #5081 (New): A system for adding and removing GUI menus.
The existing system needs documentation.
Also, refactoring to use RCP would help here
Christopher Brooks
10:22 AM Bug #5067: The introduction of basic services so that module names are not referenced.
This should probably wait on the Ptolemy OSGI implementation, so I'm targeting
2.X.Y
Christopher Brooks
09:24 AM Bug #4342: apple-extensions module on windows make Eclipse build difficult
Chris Weed posted the following:
I don't know if you guys ever try to build kepler on windows with eclipse,
but it t...
Christopher Brooks

07/06/2010

06:40 PM Bug #5069: The ability to create user manuals from a wiki that is continuously updated.
I agree that making it easier for developers to update documentation is an
excellent goal. However, it is fairly dif...
Christopher Brooks
06:33 PM Bug #4324: ptII/module-info/revision.txt not being updated
It is important that Kepler developers use the most recent Ptolemy sources
so I'm marking this as targeting Kepler 2....
Christopher Brooks
06:29 PM Bug #5076: Minimize the number of files downloaded from the Ptolemy repository.
Ptolemy currently is deployable as a number of jar files that do not
include the source code.
The Ptolemy project ...
Christopher Brooks
06:02 PM Bug #5068: Investigate jars (why they are necessary) and upgrade whenever possible.
Updating the 3rd part jars is a laudable goal and a good practice, but
quite a bit of work. I'm not sure if we have ...
Christopher Brooks
05:59 PM Bug #5026: Error dialog pop up in RC3 when closing the ImageJ window after workflow execution.
Bug 5066 was a duplicate of this bug.
In Bug 5066, David wrote:
(2) Fix for ImageJ so that preferences are stored in ...
Christopher Brooks
05:58 PM Bug #5066: Fix for ImageJ so that preferences are stored in an area other than the installation space. This may require a change to ImageJ source code.
Duplicate of 5026, though this bug has a better title than 5026. I'll update 5026. Christopher Brooks
04:21 PM Bug #5077 (Resolved): add real inputs and outputs to sensor actor
The output port should write the latest sampled value. One or more input ports should be added to control the sensor. Daniel Crawl
02:07 PM Bug #5017: ReportLayout LSID and referral list should be maintained
Comment#15 should be fixed now in 2.0 at r25056. Needs to be merged into trunk. Derik Barseghian
02:06 PM Bug #5009: Opening two KARS that have the same Workflow, but that have different report layouts, will make the first layout refresh itself with the layout from the KAR that was opened most recently.
Should be fixed in 2.0 now at r25056. Needs to be merged into trunk. Derik Barseghian
01:53 PM Bug #5061: Report Design Panel needs fixing wrt event listening
This is fixed in 2.0, but needs to be merged into trunk. Derik Barseghian
 

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