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From 07/26/2011 to 08/24/2011

08/24/2011

01:48 PM Bug #5460: Mac OS X: Matlab Actors fail in Kepler.app
I moved 2.3 to ptII r61797, and at kepler r28349 i updated the ptolemy-kepler-2.3.0 branch. So it should be fixed but... Derik Barseghian
09:14 AM Bug #5458: Moving between 2.2 and 2.3 and back requires deleting ~/KeplerData
A complete solution would allow users to move between 2.2 and 2.3.
A partial solution would be to allow users to move...
Christopher Brooks
09:13 AM Bug #5457: Mac OS X: Kepler.app should display module error messages in a window
There are two bugs here. bug#5458 "Moving between 2.2 and 2.3 and back requires deleting ~/KeplerData" is specific t... Christopher Brooks
07:45 PM Bug #5457: Mac OS X: Kepler.app should display module error messages in a window
I believe I've created a solution to this bug locally, but the solution is not backwards compatible in so far as 2.2'... Derik Barseghian

08/23/2011

09:21 AM Bug #5473: 2.3.0rc1 won't start on Windows XP
Why is the file use.keplerdata created and included in the installers? Is this a mistake? Its existence can cause Kep... Derik Barseghian
04:58 AM Bug #5473: 2.3.0rc1 won't start on Windows XP
Hi Derik,
This directory, as you suggest, is only for downloaded modules. The build system first looks relative to i...
David Welker

08/22/2011

04:28 PM Bug #5461: Add a directory to contain all modules in linux installer
fixed at 28343-28345 Derik Barseghian
02:18 PM Bug #5473: 2.3.0rc1 won't start on Windows XP
This is caused by the existence of the file use.keplerdata, e.g. C:\Program Files\Kepler-2.3\build-area\use.keplerdat... Derik Barseghian
12:40 PM Bug #5460: Mac OS X: Matlab Actors fail in Kepler.app
Moving to r61797 in the ptII tree seems reasonable.
The ChangeLog is at
http://chess.eecs.berkeley.edu/ptexternal/nig...
Christopher Brooks
11:52 AM Bug #5460: Mac OS X: Matlab Actors fail in Kepler.app
Hey Christopher, I've looked through the changes post 61797 and don't see any obvious reason not to move all the way ... Derik Barseghian

08/19/2011

09:21 AM Bug #5474: Make the eml actor on kepler handle multiple physical representations in an entity
Matt suggests the possible solution:
probably collect all of the objects for an entity, then pick the best one for t...
Jing Tao
09:17 AM Bug #5474 (New): Make the eml actor on kepler handle multiple physical representations in an entity
Wade Sheldon from GCE-LTER brought an question if the eml actor can handle mutiple physical representations in an ent... Jing Tao

08/17/2011

06:41 PM Bug #5457: Mac OS X: Kepler.app should display module error messages in a window
I'm able to replicate, though I'm able to get into a state where I can't start 2.3 or its associated standalone modul... Derik Barseghian

08/16/2011

04:42 PM Bug #5473 (Resolved): 2.3.0rc1 won't start on Windows XP
I can't get 2.3.0 rc1 to start on Windows XP after installing using the installer.
The shortcuts are broken, and dou...
Derik Barseghian

08/15/2011

02:18 PM Bug #5463: Provide security for Kepler databases
duplicate Derik Barseghian
02:08 PM Bug #5463 (Resolved): Provide security for Kepler databases
By default, Kepler keeps certain data in hsql dbs, run as servers. If someone knows your ip, your servers are up, and... Derik Barseghian
02:09 PM Bug #5444: Kepler can't run workflow if two instances exist at same time
Filed bug#5463 for this issue.
(In reply to comment #9)
> No permission checking is done for users. This causes some...
Derik Barseghian
09:25 AM Bug #5458: Moving between 2.2 and 2.3 and back requires deleting ~/KeplerData
In linux installer, I got this error by type "./kepler.sh":
[null] Copying 1 file to /home/tao/KeplerData/kepler.modu...
Jing Tao
09:20 AM Bug #5462: Can't run the kepler by ./kepler.sh after decompressing the linux installer
Hi, Christopher:
Thank you for pointing the duplication. Though the answer is "yes or no", I will mark this bug as t...
Jing Tao
09:03 AM Bug #5462: Can't run the kepler by ./kepler.sh after decompressing the linux installer
Jing, pleases see http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5458
If you feel this bug is a duplicate of that...
Christopher Brooks
08:58 AM Bug #5462 (Resolved): Can't run the kepler by ./kepler.sh after decompressing the linux installer
After decompressing the linux installer(RC1), i tried to run kepler by type ./kepler.sh. But I got an error:
tao@pac...
Jing Tao
09:01 AM Bug #5445: Kepler 2.2.0 tar file should create a kepler-2.2.0 directory
This did not get fixed in 2.2.0, but Jing's bug#5461 nicely sums up the problem, so I'm marking this older bug as a d... Christopher Brooks
08:50 AM Bug #5461 (Resolved): Add a directory to contain all modules in linux installer
In the current linux installer, the modules will be decompressed to the directory where you run the command. So I hav... Jing Tao

08/14/2011

04:22 PM Bug #5460: Mac OS X: Matlab Actors fail in Kepler.app
Reopening this because changes to the Matlab interface need
to be folded in to the 2.3.0 release.
Christopher Brooks
04:11 PM Bug #5460: Mac OS X: Matlab Actors fail in Kepler.app
The best way to handle this is to create a symoblic link:
sudo ln -s /Applications/MATLAB_R2011a.app/bin/matlab /usr/...
Christopher Brooks
11:25 AM Bug #5460 (Resolved): Mac OS X: Matlab Actors fail in Kepler.app
Models that use the Matlab interface fail when started under Mac OS X
by double clicking on Kepler.app.
This is ...
Christopher Brooks
04:13 PM Bug #5459: Kepler 2.3 blocking bug
Use Target Milestone 2.3.0, not a blocker. Christopher Brooks
10:38 AM Bug #5459 (Resolved): Kepler 2.3 blocking bug
We don't have a Version 2.3.0 field, so bugs found during the Kepler-2.3 installation testing process should block th... Christopher Brooks
04:12 PM Bug #5458: Moving between 2.2 and 2.3 and back requires deleting ~/KeplerData
Use Target Milestone 2.3.0 Christopher Brooks
10:38 AM Bug #5458: Moving between 2.2 and 2.3 and back requires deleting ~/KeplerData
Block the Kepler-2.3.0 bug#5459 Christopher Brooks
10:36 AM Bug #5458 (Resolved): Moving between 2.2 and 2.3 and back requires deleting ~/KeplerData
With Kepler 2.3 rc1, I had to remove my ~/KeplerData directory, see
bug#5457
However, to go from Kepler 2.3 back ...
Christopher Brooks
04:12 PM Bug #5457: Mac OS X: Kepler.app should display module error messages in a window
Use Target Milestone. Christopher Brooks
10:40 AM Bug #5457: Mac OS X: Kepler.app should display module error messages in a window
Block bug#5459
The bug here is that I should not have to look into the console to determine
why Kepler failed to start
Christopher Brooks
09:24 AM Bug #5457 (Resolved): Mac OS X: Kepler.app should display module error messages in a window
When I double click on the Kepler.app icon, Kepler appears
to quickly start up and then exit.
Looking at the Cons...
Christopher Brooks

08/13/2011

08:05 PM Bug #5432: 2.2 mac installer contains 2 copies of everything
That did seem to do the trick. Closing.
FYI size of test 2.3 installers:
-rw-r--r--@ 1 derik derik 225M Aug 12 1...
Derik Barseghian
06:33 PM Bug #5456: Documentation for Reporting 2.3.0
* provenance - done by dan. Derik Barseghian
06:24 PM Bug #5444: Kepler can't run workflow if two instances exist at same time
Retargeting to 2.4. Derik Barseghian
06:21 PM Bug #5455: Documentation for 2.3.0
Done Derik Barseghian

08/12/2011

07:15 PM Bug #5456 (Resolved): Documentation for Reporting 2.3.0
Documentation needs to be done for the Reporting Suite.
* reporting-2.3.0 - done
* workflow-run-manager-2.3.0 - d...
Derik Barseghian
06:38 PM Bug #5455 (Resolved): Documentation for 2.3.0
Documentation needs to be done for the 2.3.0 release.
The getting-started-guide needs updating, at the very least t...
Derik Barseghian
06:08 PM Bug #5432: 2.2 mac installer contains 2 copies of everything
Should be fixed at r28248 in trunk and r28249 in 2.3 branch.
Will close when I verify it works with mac installer bui...
Derik Barseghian

08/11/2011

07:04 PM Bug #5444: Kepler can't run workflow if two instances exist at same time
No permission checking is done for users. This causes some issues, see bug#5278. This doesn't cause problems for our ... Derik Barseghian

08/10/2011

10:06 AM Bug #5203: Kepler wont start
This is a kepler-2.0 bug 2010-10-18 bug where kepler.sh failed to
start under linux with
[null] Exception in thr...
Christopher Brooks

08/08/2011

04:55 PM Bug #5444: Kepler can't run workflow if two instances exist at same time
So does this new feature ensure that each user that might need to write to the hsql database has permissions to do so... Matt Jones
02:21 PM Bug #5444: Kepler can't run workflow if two instances exist at same time
In r28216 Dan added a way to start the hsql servers using kepler.sh -hsql start and kepler.sh -hsql stop. This allows... Derik Barseghian

08/06/2011

10:51 AM Bug #5451: Componets ->(right mouse) View Dokumentation causes NameDuplicationException
We usually close bugs when the bug is fixed in the devel tree.
We don't seem to follow a formal policy, perhaps we sh...
Christopher Brooks
03:53 AM Bug #5451: Componets ->(right mouse) View Dokumentation causes NameDuplicationException
I´ve just downloaded trunk(revision 28231) and get it on with ant.
Jup, the bug is fixed.
So, I´m not sure what is ...
unknown unknown
10:50 AM Bug #5454: DEBUG->ANIMATE EXECUTION error message
Duplicate Christopher Brooks
10:49 AM Bug #5454 (Resolved): DEBUG->ANIMATE EXECUTION error message
In Kepler devel trunk:
1) Start with
ant run
2) Drag in an actor
3) Right click, select Documentation -> Display
...
Christopher Brooks
03:57 AM Bug #5450: Menu: Help -> Kepler Documentation causes IllegalArgumentException
Has changed a bit in trunk (revision 28231):
[run] Using default context menu stuff for class: ptolemy.kernel.Compon...
unknown unknown

08/05/2011

09:36 AM Bug #5451: Componets ->(right mouse) View Dokumentation causes NameDuplicationException
@ Daniel Crawl
I do not know how much download you have daily, but
may be it could help when somebody add a hint on ...
unknown unknown
09:30 AM Bug #5451: Componets ->(right mouse) View Dokumentation causes NameDuplicationException
Than,.. it would be better when I switch to your developer version/build from source. unknown unknown
09:25 AM Bug #5451: Componets ->(right mouse) View Dokumentation causes NameDuplicationException
This bug was fixed in r27824, which was after Kepler 2.2:
r27824 | crawl | 2011-07-11 12:36:48 -0700 (Mon, 11 Jul 20...
Daniel Crawl
09:03 AM Bug #5451: Componets ->(right mouse) View Dokumentation causes NameDuplicationException
Can you send me precise instructions on what you do to get the bug?
1.Start Kepler
2.choose "ANOVA" with right click...
unknown unknown
08:58 AM Bug #5451: Componets ->(right mouse) View Dokumentation causes NameDuplicationException
Under Kepler-2.2 and Mac OS X, I have Documentation -> Display.
What is the exact text of the menu choice you are usi...
unknown unknown
08:53 AM Bug #5451: Componets ->(right mouse) View Dokumentation causes NameDuplicationException
Can you send me precise instructions on what you do to get the bug?
You may want to try a reboot and a clean install ...
unknown unknown
08:47 AM Bug #5451: Componets ->(right mouse) View Dokumentation causes NameDuplicationException
Also, you have only one instance of Kepler running, right?
Yes, I can produce it with only one instance.
unknown unknown
08:46 AM Bug #5451: Componets ->(right mouse) View Dokumentation causes NameDuplicationException
Just to be clear, you are running with Kepler-2.2 under Linux and
not a Kepler distribution that you built from sourc...
unknown unknown
08:36 AM Bug #5451: Componets ->(right mouse) View Dokumentation causes NameDuplicationException
Interesting.
Just to be clear, you are running with Kepler-2.2 under Linux and
not a Kepler distribution that you bui...
Christopher Brooks
08:12 AM Bug #5451: Componets ->(right mouse) View Dokumentation causes NameDuplicationException
I can't reproduce this.
1) Download Kepler-2.2 for Mac OS X or build from sources
2) Start Kepler
3) Actors -> CoreAc...
Christopher Brooks
07:36 AM Bug #5451: Componets ->(right mouse) View Dokumentation causes NameDuplicationException
I´ve seen that you intend to run several workflows with own windows in Kepler.
So it may be useful to attach the doc...
unknown unknown
07:30 AM Bug #5451: Componets ->(right mouse) View Dokumentation causes NameDuplicationException
Platform:
openSUSE11.4 kernel3.0 64bit
IcedTea/Openjdk6b22
Kepler2.2.0
unknown unknown
07:28 AM Bug #5451 (Resolved): Componets ->(right mouse) View Dokumentation causes NameDuplicationException
When I try to call "View Documentation" (right mouse click on a component->"View Documetation") and there is already ... unknown unknown
08:08 AM Bug #5453 (Resolved): ant javadoc -Dfull=true fails
Running "ant" says
> javadoc Create javadoc for all the modules in modules.txt. Use -Dfull=true ...
Christopher Brooks
07:59 AM Bug #5430: problems with multiple instances of kepler
This is a duplicate of bug#5444, "Kepler can't run workflow if two instances exist at same time" Christopher Brooks
07:58 AM Bug #5444: Kepler can't run workflow if two instances exist at same time
Wow, the bug with having multiple Keplers running just hit me hard.
If there are two Keplers running, then drag and d...
Christopher Brooks
07:54 AM Bug #5452: uneasy access to the demo workflows
Platform:
openSUSE11.4 kernel3.0 64bit
IcedTea/openjdk6b22
Kepler2.2.0
unknown unknown
07:53 AM Bug #5452 (Resolved): uneasy access to the demo workflows
I´ve tried to work down the getting started guide step by step, but had some trouble to get the described demo (e.g L... unknown unknown
04:22 AM Bug #5450: Menu: Help -> Kepler Documentation causes IllegalArgumentException
Also happens with Menu: Window -> Runtime Window -
[null] ERROR (org.kepler.gui.MenuMapper:getActionFor:269) Exc...
unknown unknown
04:21 AM Bug #5450 (Resolved): Menu: Help -> Kepler Documentation causes IllegalArgumentException
I´ve opened the Help menu and select Kepler Documentation which causes an exeption:
export LANG=en-US
user@linux-...
unknown unknown

08/04/2011

02:27 PM Bug #5449: Running ant should include instructions about updating kepler-tasks.jar
This works for me after your change Christopher. Derik Barseghian
02:07 PM Bug #5449 (Resolved): Running ant should include instructions about updating kepler-tasks.jar
When the ant command is run without arguments, a help message is produced.
That help message should display the de...
Christopher Brooks
02:01 PM Bug #5447: Use https, not svn to check out the ptII repository
With Dan's help, I fixed this. We now use https for the ptII svn repository download. Christopher Brooks
11:37 AM Bug #5342: ant update hangs if the svn certificate changes (and possibly always hangs the first time)
Thanks, that worked. I now get:
[update-modules] Updating build-area...
[update-modules] svn -r head update --accep...
Christopher Brooks
10:32 AM Bug #5342: ant update hangs if the svn certificate changes (and possibly always hangs the first time)
Fixed in r28185.
Subversion appears to only save certificates locally if the signing authority is not trusted by the...
Daniel Crawl
09:59 AM Bug #5448 (Resolved): cannot start Kepler using non-IcedTea OpenJDK
Christopher Brooks reports:
Under RedHat, I was able to run Kepler-2.2.0 under Sun JDK 1.6.0_21
However, as exp...
Daniel Crawl
09:57 AM Bug #5438: missed menubar and misformed buttons without text
Fixed at r28184.
I was also able to reproduce using Oracle JDK, which does not appear to use $LANG for the locale.
...
Daniel Crawl
09:55 AM Bug #5270: No menu bar and labels when non-default locale is set
Fixed at r28184. Daniel Crawl

08/03/2011

11:11 AM Bug #5444: Kepler can't run workflow if two instances exist at same time
Similar to bug#5430. Will try to fix for 2.3. Derik Barseghian
06:30 AM Bug #5444: Kepler can't run workflow if two instances exist at same time
Maybe Derik will have some insight since he has been working with the prov DB quite a bit. ben leinfelder
06:29 AM Bug #5444: Kepler can't run workflow if two instances exist at same time
This used to work - but it's been literally years since I've seen the code and we may even have a newer HSQLDB versio... ben leinfelder
11:10 AM Bug #5430: problems with multiple instances of kepler
Similar to bug#5444. Will try to fix for 2.3. Derik Barseghian
11:01 AM Bug #5342: ant update hangs if the svn certificate changes (and possibly always hangs the first time)
The attachment contains a run that illustrates the bug.
I'm running Mac OS 10.7 and SVN 1.6.16. The SVN came from X...
Christopher Brooks
10:20 AM Bug #5342: ant update hangs if the svn certificate changes (and possibly always hangs the first time)
I cleaned out ~/.subversion/auth/*, but svn does not re-save the certificate. I also set store-auth-creds = yes in bo... Daniel Crawl
08:44 AM Bug #5447 (Resolved): Use https, not svn to check out the ptII repository
In April, 2010, we discussed using https to check out the ptII tree instead of using the svn protocol.
See
http:...
Christopher Brooks
07:53 AM Bug #5438: missed menubar and misformed buttons without text
Huhuhuhuuuuuu, I´ve tried the workaround in comment 15.
It works here now.
When this is common(and looks like) than ...
unknown unknown
05:02 PM Bug #5438: missed menubar and misformed buttons without text
I was able to reproduce the original problem (missing menus and blank buttons) by using IcedTea OpenJDK and $LANG set... Daniel Crawl

08/02/2011

04:25 PM Bug #5446: View=>XML View broken
To replicate this.
1) Start kepler with "ant run"
2) Do View -> XML View
I fixed this.
Line 281 of ptolemy.actor.g...
Christopher Brooks
03:19 PM Bug #5446 (Resolved): View=>XML View broken
Trying the View=>XML View menu gives an NPE. Seems to be broken in Vergil, as far back as 61608:
java.lang.NullPoi...
Derik Barseghian
04:18 PM Bug #5342: ant update hangs if the svn certificate changes (and possibly always hangs the first time)
Good point.
When the user first checks out build-area, they will be asked if they
want to accept the certificate. T...
Christopher Brooks
04:06 PM Bug #5342: ant update hangs if the svn certificate changes (and possibly always hangs the first time)
Does this occur when you do a new checkout from a new machine or only when you copy an existing tree to a new machine? Daniel Crawl
03:52 PM Bug #5342: ant update hangs if the svn certificate changes (and possibly always hangs the first time)
ant update continues to fail on a new machine until the user
runs an svn command by hand.
Here's what happened.
I'm...
Christopher Brooks

08/01/2011

04:22 PM Bug #5438: missed menubar and misformed buttons without text
On sisyphus.eecs.berkeley.edu, we are running:
[bldmastr@sisyphus test]$ rpm -qa redhat-release
redhat-release-5Clie...
Christopher Brooks
04:16 PM Bug #5438: missed menubar and misformed buttons without text
I installed openSUSE 11.4, and had no problems running Kepler 2.2 from the tarball. The default java is:
java versio...
Daniel Crawl
11:17 PM Bug #5438: missed menubar and misformed buttons without text
Under RedHat, I was able to run Kepler-2.2.0 under Sun JDK 1.6.0_21
However, as expected, OpenJDK 1.6.0 fails
bash-...
Christopher Brooks

07/31/2011

09:55 AM Bug #5445 (Resolved): Kepler 2.2.0 tar file should create a kepler-2.2.0 directory
The Kepler download page at
https://kepler-project.org/users/downloads
has a link for the Kepler-2.2.0 linux tar fi...
Christopher Brooks

07/30/2011

04:38 AM Bug #5438: missed menubar and misformed buttons without text
On vista I have also the file from:
https://kepler-project.org/users/downloads
the windows version.
unknown unknown
04:37 AM Bug #5438: missed menubar and misformed buttons without text
Q:Can you tell us which version of kepler you're trying?
A:I have here still kepler2.2.0, from
https://kepler-projec...
unknown unknown
07:07 PM Bug #5438: missed menubar and misformed buttons without text
Sorry to hear you're still having problems, thanks for reporting them.
Can you tell us which version of kepler you'r...
Derik Barseghian
05:22 PM Bug #5444: Kepler can't run workflow if two instances exist at same time
This may cause problem in workflow run engine - if user schedules two jobs at the same time, the running will fail. Jing Tao
05:21 PM Bug #5444 (In Progress): Kepler can't run workflow if two instances exist at same time
Both vanilla and reporting suites (2.3) have problems. But the behaviors are different:
1. Vanilla kepler:
Start ...
Jing Tao

07/29/2011

12:00 PM Bug #5438: missed menubar and misformed buttons without text
When I remember right I seen in the documentation that you use MAC OS(looks like).
VirtualBox got stable with version...
unknown unknown
11:57 AM Bug #5438: missed menubar and misformed buttons without text
I son´t like it to say, but you have some serious problems with your program:
I´ve tried it with sun jdk6u25 on wind...
unknown unknown

07/28/2011

04:19 PM Bug #5129: adding and removing configuration properties could be made easier
At r27977 and 27978, I checked in a stopgap to this bug -- now configuration xml files are stored in version specific... Derik Barseghian
 

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