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From 05/27/2012 to 06/25/2012

06/25/2012

11:22 AM Bug #4908: actor/director/attribute .xml file documentation needs to be updated
I'm working on this in conjunction with 5529. Daniel Crawl
11:20 AM Bug #5576: memory leak in ptolemy.data.expr.CachedMethod
I ran the attached model and this looks fixed to me. Previously, each execution added about 1000 instances of ptolemy... Daniel Crawl

06/24/2012

05:31 PM Bug #5634 (Resolved): Kepler should have Configure Layout menu choices
The graph layout mechanism has a Configure Layout menu choice in Vergil.
Perhaps Kepler should have this as well.
T...
Christopher Brooks
10:23 AM Bug #5539: Open Actor does not find the actor source code when Kepler is invoked from within Eclipse
It turns out that my fixes to Eclipse.java were causing confusing error messages
in the Eclipse console during startu...
Christopher Brooks

06/22/2012

05:20 PM Bug #5610: check that build system can handle a "0.9.0" release
I haven't been able to find any problems with using 0.9.0.
I plan to release sensor-view and runtimemonitor as -0.9.0...
Derik Barseghian
04:31 PM Bug #5252: Plotting bugs
14) This is minor, but you can change the title and x, and y labels by right-clicking on the plot in the Plot Viewer.... Derik Barseghian
02:58 PM Bug #5252: Plotting bugs
#13) You can add a duplicate row to a Plot Design, and this duplicate is not plotted. If you delete the original row,... Derik Barseghian
03:08 PM Bug #5550: Windows installer should be a .exe, not a .jar
I'm moving this back to 2.4.0 and assigning it to myself.
The problem is that clicking on a .jar file does not relia...
Christopher Brooks
02:52 PM Bug #5550: Windows installer should be a .exe, not a .jar
It would be great if the 'make-windows-installer' ant task for kepler can automatically utilize Launch4J to create ex... jianwu jianwu
02:56 PM Bug #5495: released kepler should allow getting patches and changing suites from command line
User question link correction: http://lists.nceas.ucsb.edu/kepler/pipermail/kepler-users/2011-September/001961.html. jianwu jianwu
02:40 PM Bug #5633 (Resolved): Actor/Attribute Search/Find Facility needs menu choices
Edward developed a search facility for models.
Under Mac OS X in the Kepler trunk, if the mouse is over the graph ca...
Christopher Brooks
01:41 PM Bug #5632 (New): Runtimemonitor token count idicator placement needs improvement
In the add-on runtimemonitor suite, if for some workflow you instantie a MonitorManager, configure it to Add counters... Derik Barseghian

06/21/2012

01:25 PM Bug #5580: create sensor-view module documentation
As discussed I put a minimal amount of time into creating sensor view documentation. I think it's pretty decent. If a... Derik Barseghian
11:34 AM Bug #5583: Sensor Simulator controllable through Kepler
I now include everything necessary in sensor-view/lib/jar/sensorview-utils-1.0.jar to be able to start the sensorsim ... Derik Barseghian

06/20/2012

03:53 PM Bug #5247: Allow user to set memory allocated to Kepler from within Kepler
Increasing the default memory heap size to 1 Gig.
However, I would not increase the default too much.
32-bit Windows...
Christopher Brooks
03:47 PM Bug #5247: Allow user to set memory allocated to Kepler from within Kepler
(In reply to comment #4)
> The current default max memory of Kepler is 512 MB, which is set at
> build-area/settings/...
Derik Barseghian
03:38 PM Bug #5247: Allow user to set memory allocated to Kepler from within Kepler
The current default max memory of Kepler is 512 MB, which is set at build-area/settings/memory.xml. It's not enough f... jianwu jianwu

06/19/2012

02:36 PM Bug #5348: Opening KAR or opening workflow under KAR behaves differently.
I can re-produce this phenomena. Another difference is that Foo.kar cannot be drag-and-drop into canvas, but the Foo ... jianwu jianwu
02:28 PM Bug #5333: 2.2 rc3: getenv("") doesn't work for mac installation.
Thanks for the info from Christopher and Hogan.
I agree it is not Kepler bug but Mac OS settings. A FAQ should be go...
jianwu jianwu
12:23 PM Bug #5333: 2.2 rc3: getenv("") doesn't work for mac installation.
Jianwu,
> One way work around is to set environment variables at
~/.MacOSX/environment.plist file. It works for Kepl...
dhogan dhogan
10:16 AM Bug #5333: 2.2 rc3: getenv("") doesn't work for mac installation.
I don't think this is really a Kepler bug.
The problem is that environment variables are poorly supported under Mac ...
Christopher Brooks
02:19 PM Bug #5403: Improve the performance of the workflow archiving data from dataturbine to metacat
I'm retargeting for consideration for kepler-2.4.0, and reassigning. The actor changes could ideally be included in k... Derik Barseghian
02:02 PM Bug #5252: Plotting bugs
So my thinking now for issue #5 is that the plotting Items of Interest tree should highlight those ports that can be ... Derik Barseghian
01:34 PM Bug #5252: Plotting bugs
(In reply to comment #16)
> Everything but #5 is done. #5 is: don't show ports you can't drag into the Plot
> Designe...
Derik Barseghian
01:23 PM Bug #5631 (New): PortParameters cannot be drag-instantiated from Outline/Items of Interest trees
You cannot drag out a PortParameter from the Outline/Items of Interest trees. The reason is ptolemy change r57732 to ... Derik Barseghian

06/18/2012

07:02 PM Bug #5606: move plotting classes to sensor-view
I discussed this w/ Dan and spent time looking through the code, and have changed my mind. We want plotting accesible... Derik Barseghian
06:38 PM Bug #5252: Plotting bugs
Everything but #5 is done. #5 is: don't show ports you can't drag into the Plot Designer (although what most users ex... Derik Barseghian
04:51 PM Bug #5252: Plotting bugs
(In reply to comment #11)
> Many people hit #8 at the sensor training workshop, and I had to tell them to
> delete th...
Derik Barseghian
03:48 PM Bug #5252: Plotting bugs
(In reply to comment #12)
> 11) Another problem is that when you add an additional item to be plotted (drag
> a port ...
Derik Barseghian
03:46 PM Bug #5252: Plotting bugs
(In reply to comment #8)
> 8) In the Plot Designer, if you click on the Color column, a color picker is
> launched. I...
Derik Barseghian
01:10 PM Bug #5252: Plotting bugs
11) Another problem is that when you add an additional item to be plotted (drag a port into the Plot Designer creatin... Derik Barseghian
05:02 PM Bug #5333: 2.2 rc3: getenv("") doesn't work for mac installation.
One way work around is to set environment variables at ~/.MacOSX/environment.plist file. It works for Kepler 2.3. But... jianwu jianwu
03:59 PM Bug #5249: test kepler for memory leaks
bump into 2.5 as discussed. jianwu jianwu
03:45 PM Bug #5630 (New): See about removing one set of ColorTableCellEditor and ColorTableCellRender classes
There are two versions of ColorTableCellEditor and ColorTableCellRenderer, one pair in Plotting, the other in Runtime... Derik Barseghian
02:55 PM Bug #5349: Cannot open KAR file after modifying it.
I could not reproduce the bug at Kepler 2.3 and Kepler trunk, it's probably already fixed. Close it. jianwu jianwu
02:43 PM Bug #5426: workflow lsid changes when running from command line
I re-open this bug since we agreed that we need a versioning model for Kepler during Kepler 2.4 release conference ca... jianwu jianwu
07:19 AM Bug #5629 (Resolved): Mac DMG installer should have better background and license agreement
Hello Christopher,
recently I have installed Kepler for Mac OS directly from the DMG file instead of using SVN.
...
Christopher Brooks

06/17/2012

08:57 PM Bug #5539: Open Actor does not find the actor source code when Kepler is invoked from within Eclipse
Fixed with changes to build-area/src/org/kepler/build/ide/Eclipse.java
Unfortunately, the path to the src/ directory ...
Christopher Brooks
06:39 PM Bug #4926: Examine Kepler for duplicated Ptolemy code
./actors/src/org/sdm/spa/gui/ShellTextArea.java
has trivial differences from
ptolemy/gui/ShellTextArea.java, so I rem...
Christopher Brooks
05:10 PM Bug #4989: The installer should offer to start Kepler
Fixed.
The user is now prompted as to whether they want to start up Kepler
as part of the installation process.
I ad...
Christopher Brooks
05:08 PM Bug #5020: 2.0-RC3 installer: R Kepler Module is not optional
Fixed.
I commented out the pack selection pane in
build-area/resources/installer/windows/izpack.ftl
Christopher Brooks
02:24 PM Bug #5020: 2.0-RC3 installer: R Kepler Module is not optional
The Kepler-2.3 Windows installer has a window for selecting which packs
are to be installed.
However, Kepler is th...
Christopher Brooks
04:51 PM Bug #5449: Running ant should include instructions about updating kepler-tasks.jar
This was fixed awhile ago. Christopher Brooks
04:40 PM Bug #4908: actor/director/attribute .xml file documentation needs to be updated
The actor documentation should be reviewed and updated before 2.4.0. Christopher Brooks
04:29 PM Bug #4995: ant installer fails under Linux
The installer target was removed from build.xml, so this bug is moot.
I was able to build a Windows installer under ...
Christopher Brooks
04:05 PM Bug #4281: ant update produces message about running svn cleanup
The problem where "ant update" fails under Windows continues to occur.
Under Windows Server 2008 R2, I got
[update-m...
Christopher Brooks
01:57 PM Bug #3801: open dialog, common places pane has white box instead of text
Fixed.
data-handling/src/org/ecoinformatics/seek/querybuilder/QBApp.java was updated:
> 919 | crawl | 2012-06-11 17:...
Christopher Brooks
01:40 PM Bug #5588: Enter and Tab behavior has changed in parameter configuration dialog
The remaining issue here is that in EditParameters, if the focus is in a line entry, then hitting the enter (aka retu... Christopher Brooks

06/15/2012

08:27 PM Bug #5052: default file open directory of Kepler 2.0
I'm reopening this because there is some confusion about what directory
Kepler opens with File->Open.
The initial di...
Christopher Brooks
03:30 PM Bug #5052: default file open directory of Kepler 2.0
As discussed today, it would be good idea if we can have demo workflows in Kepler actor repository at the left part o... jianwu jianwu
08:00 PM Bug #5627: List all possible port types in actor Types drop down list
I modified
ptolemy/actor/gui/PortConfigurerDialog.java
so that it gets the types from the TypeLattice. The code is:
...
Christopher Brooks
03:57 PM Bug #5627 (New): List all possible port types in actor Types drop down list
It would be nice if on an actor's port Type drop down list, all possible types were listed. If this list were automat... Derik Barseghian
07:22 PM Bug #5576: memory leak in ptolemy.data.expr.CachedMethod
This is possibly fixed in r63763 in the ptII tree.
Basically, I had to add better equals() and hashCode() methods to
...
Christopher Brooks
05:01 PM Bug #5403: Improve the performance of the workflow archiving data from dataturbine to metacat
The sensor data read from DT is no longer written to file system, but written directly to EcogridWriter via ObjectTok... Daniel Crawl
04:52 PM Bug #5403: Improve the performance of the workflow archiving data from dataturbine to metacat
Modified EcogridWriter actor:
- input port for object tokens as the source data
- retries if uploading fails
- guara...
Daniel Crawl
04:35 PM Bug #5602: Timezone confusion using the scheduler
I tried testing by scheduling with kepler-dev, but i get an error which includes this text:
WorkflowScheduler.checkU...
Derik Barseghian
04:25 PM Bug #5628 (New): possible to get NPE when right-clicking on kar in Components tree
It's possible to get this NPE when right-clicking on a KAR in the Components pane. I don't have a replication procedu... Derik Barseghian
04:02 PM Bug #5623: Outline tab context menu problems
Looks good at r29962. Thanks, closing. Derik Barseghian
03:22 PM Bug #5623: Outline tab context menu problems
I think it's fixed in r29960. I left Show On Canvas for attributes, ports, and relations since it's useful to be able... Daniel Crawl
03:54 PM Bug #5545: Configure Ports dialog Type column gui annoyances
Much better, thanks. Closing. Derik Barseghian
03:29 PM Bug #5240: NameDuplicationException from SequencePlotter
I'm closing this because I can't reproduce it in the current tree.
The problem is that a model with two plots was pro...
Christopher Brooks
03:11 PM Bug #5607: constant actor icon won't automatically re-size since 2.3.
I've backed out a portion of this change:
2011-03-03 16:41 cshelton
* [r60470] /trunk/ptolemy/vergil/icon/Attribu...
Christopher Brooks
10:36 AM Bug #5607: constant actor icon won't automatically re-size since 2.3.
If the value of a Const actor is a long string, then the icon is not truncated.
This occurs in both Kepler and Vergil.
Christopher Brooks
02:30 PM Bug #5565: deal with licensing for oracle jar in core
Christopher removed the jar from Ptolemy, and I removed it from Kepler. I also updated the error messages when the ja... Daniel Crawl
02:23 PM Bug #5571: user request: show execution time in runtime window
The status bar now displays the amount of time and memory consumed.
The change is ptII 63760
Christopher Brooks
02:19 PM Bug #5286: Remove the override of EntityTreeModel
Removed at r29957.
Reopen this bug if you discover a change in component tree behavior in the sensor-view suite.
Derik Barseghian
12:43 PM Feature #5626 (New): interacting with kepler.sh to know the status and other information in batch-mode.
When we run kepler in batch mode, it's good to know its status and other information.
CAMERA has done something fo...
jianwu jianwu
12:21 PM Bug #5625 (Resolved): create kepler documentation for 2.4
we need new documentation for 2.4. jianwu jianwu
11:50 AM Bug #5509: How do I run the demos
Enable the demos to show up in the actor tree with their full version.
Module demos should also be displayed.
Ilkay Altintas
11:48 AM Bug #5448: cannot start Kepler using non-IcedTea OpenJDK
Fixed in Kepler 2.3 and in the Kepler devel trunk
bash-3.2$ java -version
java version "1.6.0_22"
OpenJDK Runtime En...
Christopher Brooks
11:47 AM Bug #5498: Issue a patch for ptolemy classpath problem in kepler-2.2
Won't fix. Use 2.3. If the patch is needed for 2.2, reopen the bug only to fix it. Ilkay Altintas
11:27 AM Bug #5279: HSQL databases use default account
Maybe generate a new usename or password at runtime and save it under kepler data. Dan will design this. Ilkay Altintas
11:17 AM Bug #5457: Mac OS X: Kepler.app should display module error messages in a window
Christopher says make it depend on Ptolemy. There is a message handler and it could be used to go through the code an... Ilkay Altintas
10:39 AM Bug #5573: remove ptolemy vendors/
2.3 shipped with ptolemy/vendors.
To avoid this in 2.4, when I make the ptII-9-0-beta branch, I'll remove ptolemy/ven...
Christopher Brooks
08:16 AM Bug #3997: Supporting display actor conversion for command line execution.
The issue here is to make it possible to capture Display and Plotter data.
A team of CMU students modified how the p...
Christopher Brooks
08:00 AM Bug #5266: Two empty boxes inside Sinewave actor and other icon problems for attributes
The reported problem here is that if a Sinewave actor is dragged onto the
canvas in Kepler, then two blank boxes appe...
Christopher Brooks
07:40 AM Bug #2123: need a way to uniquely identify actor in a workflow and locate it
BTW - the ptII tree has a find feature that allows the user to search for
actors or parameters by name.
ptolemy.verg...
Christopher Brooks

06/14/2012

08:45 PM Bug #5378: add rety logic to SpanTodt, attempt to recover if RBNB goes down
Whoops, that last sentence doesn't make sense. If SPAN is down, it's down. Should SpanToDT be down, that's when SPAN ... Derik Barseghian
06:30 PM Bug #5378: add rety logic to SpanTodt, attempt to recover if RBNB goes down
Should be fixed with r29937, r29939, r29950, 29951, with the caveat I've only tested using the simulator as SPAN. Lea... Derik Barseghian

06/13/2012

07:15 PM Bug #4711: Problem with L.H. actor tree: ActorName,kar
I fixed the display name to use "Name.kar" instead of "Name,kar". The actor kars were reorganized a long time ago int... Daniel Crawl
07:08 PM Bug #5592: Site Layout DE Director missing documentation
same fix for bug 5355, not 5535 Daniel Crawl
07:07 PM Bug #5592: Site Layout DE Director missing documentation
same fix for 5535:
I updated ShowDocumentationAction: if the documentation is missing, try generating from the sourc...
Daniel Crawl
07:06 PM Bug #5355: actor documentation not included on instantiation
I updated ShowDocumentationAction: if the documentation is missing, try generating from the sources, and if that fail... Daniel Crawl
07:04 PM Bug #5453: ant javadoc -Dfull=true fails
It looks like -Dfull was used to include Kepler and Ptolemy sources when generating the javadocs. However, running wi... Daniel Crawl
11:10 AM Bug #3997: Supporting display actor conversion for command line execution.
This bug needs to be fixed in version 2.4. I have tried locally using hydro library. It works.
We can either have a...
jianwu jianwu

06/12/2012

04:41 PM Bug #5399: "./kepler.sh -runwf -nogui -nocache" command will not quit if some parameters are set.
The bug is gone. jianwu jianwu
11:43 AM Bug #5578: Add DiffModules with build-area
I checked-in the patch. Thanks for the contribution. Daniel Crawl
11:31 AM Bug #5406: "./kepler.sh -runwf -nogui" won't work if the workflow file path includes 'repository'
fixed Daniel Crawl
10:38 AM Bug #5587: long parameter values get replaced with scrollbar
Patricia fixed in r63735. Daniel Crawl
08:35 AM Bug #4261: Long file name on windows
ptolemy.data.properties has been removed.
That package used to contain files with long names.
I added test to https:/...
Christopher Brooks
08:23 AM Bug #2369: Scrollbars Disappear After Using Fullscreen Mode--Now crashes
There was a problem with scrollbars disappearing after fullscreen, but
View->Full Screen has been removed, so this bu...
Christopher Brooks

06/11/2012

05:53 PM Bug #4112: make kepler use OSX dialog boxes
OpenArchiveAction.java and ExportArchiveAction.java were already fixed and use PtGUIUtilities.useFileDialog(). I fixe... Daniel Crawl
02:59 PM Bug #4112: make kepler use OSX dialog boxes
Ptolemy II now uses java.awt.FileDialog for file open etc.
ptolemy.gui.PtFileChooser is a FileDialog or a FileChooser...
Christopher Brooks
02:23 PM Bug #4112: make kepler use OSX dialog boxes
Christopher, did you finish this? The file dialogs on mac appear to be using java.awt.FileDialog. Daniel Crawl
04:06 PM Bug #5437: provenance hsqldb database doesn't behave as though it's properly shutdown when in server mode
This was occurring for all 3 databases in server mode, not just provenance.
Fixed by issuing sql SHUTDOWN instead of...
Daniel Crawl
03:20 PM Bug #5286: Remove the override of EntityTreeModel
Sean can you confirm: am I right in thinking the point of the override was to avoid collapsing the Outline and Plotti... Derik Barseghian
02:20 PM Bug #5623 (Resolved): Outline tab context menu problems
When you change to the Outline tab, and expand an actor's tree and right-click on one of the actor's ports, attribute... Derik Barseghian
01:58 PM Bug #5603: ant run -Dworkflow=${HOME}/Downloads/SimpleLoop.kar fails
ant run -Dworkflow works for kars now. Daniel Crawl
01:37 PM Bug #5425: error when running -nocache and no .kepler
This does not occur with the kepler or provenance suite. Looks like wrm requires the cache db. Daniel Crawl
01:30 PM Bug #5426: workflow lsid changes when running from command line
fixed: kepler.sh -runwf -noilwc ... will not change the lsid. Daniel Crawl
11:50 AM Bug #5381: run-workflow does not work for KAR files
duplicate of 5603 Daniel Crawl
11:44 AM Bug #5156: ant run for kepler 1.0 fails after clean svn checkout
fixed, you can now run kepler 1.0. Daniel Crawl
11:25 AM Bug #5609: use different port for HSQL db in .kepler
I changed the port to 9004. Daniel Crawl
11:11 AM Bug #5588: Enter and Tab behavior has changed in parameter configuration dialog
I just checked and tab now moves to the next parameter's field, but enter still does not apply the new parameter valu... Daniel Crawl
10:40 AM Bug #5587: long parameter values get replaced with scrollbar
I just checked, and this is still a problem. I added a screen shot. Daniel Crawl

06/07/2012

02:37 PM Bug #5621: Need change the access order type from denyFirst to allowFirst in kepler when it generate emls
Sounds like patches will have to be issued for all relevant versions of kepler at the time of metacat upgrade, and an... Derik Barseghian
02:15 PM Bug #5621 (Resolved): Need change the access order type from denyFirst to allowFirst in kepler when it generate emls
When kepler uploads kar xml and kar files to the metacat repository, the two files will be associated with eml files ... Jing Tao

06/01/2012

05:33 PM Bug #5614 (New): Build system should not require svn binary
Currently, commands like "ant update" require that the user have svn in their path.
It would be good if Windows us...
Christopher Brooks
10:52 AM Bug #5612 (New): String index out of range in R actor
The R actor can only hand down a certain size of string array through a port.
I have attached a workflow which show...
Claas-Thido Pfaff

05/30/2012

10:01 AM Bug #5602: Timezone confusion using the scheduler
We added two drop-down boxes for both the start and end time. Users can use the boxes to choose time zone names.
In ...
Jing Tao
09:03 AM Bug #5362: Create a GUI so user can easily archive a senosr's data from a dataturbine to a metacat
The menu for this action wasn't added to kepler, so we don't need to remove it.
The code for this feature locates sen...
Jing Tao
08:55 AM Bug #5605: Kepler scheduler doen't work for local workflows in windows os
There is a hard code "/" in file path. After replacing it by File.Separator, it worked. Jing Tao
 

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