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From 11/05/2008 to 12/04/2008

12/04/2008

03:33 PM Bug #3693: MultiInstanceComposite actor deadlocks sometimes
The deadlocks appear to occur when using PN (probably due to multi-threading). I'll upload a simple workflow. Note th... jianwu jianwu
03:15 PM Bug #3693: MultiInstanceComposite actor deadlocks sometimes
I can't reproduce this.
In Kepler-1.0.0 on a multicore Windows 2003 Server with Java 1.6.0_07, I did:
1) Started Kepl...
Christopher Brooks
02:49 PM Bug #3693 (In Progress): MultiInstanceComposite actor deadlocks sometimes
When this actor is used in a workflow, Kepler sometimes deadlocks. To see this, repeatedley run a workflow with this ... jianwu jianwu
02:02 PM Bug #3339: directory param Browse button for External Execution actor doesn't work properly
Fixed with ptII r51751. Derik Barseghian

11/26/2008

06:47 PM Bug #3691: JButton labels truncated on macOSX
I haven't looked at this in complete detail, but our issue seems like that described here, under "Radar #6219608":
ht...
Derik Barseghian
05:25 PM Bug #3691 (Resolved): JButton labels truncated on macOSX
I've been ignoring this bug forever. In os x, jbutton labels are truncated. IMO, this sort of thing is a big turn off... Derik Barseghian

11/21/2008

06:25 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
Some details on progress on this bug may be found here:
https://dev.kepler-project.org/developers/interest-groups/pro...
Derik Barseghian
04:36 PM Bug #3683 (Resolved): add tokenType to token_flow table in provenance sql schema
When retrieving a token_flow.data from SQL provenance into Kepler, it will be useful to know its tokenType. A new tok... Derik Barseghian
04:31 PM Bug #3633: New token type: By Reference / By Value
Refiling under Component core. Derik Barseghian
04:29 PM Bug #3668: Define contents of "Publication Ready Archive"
Filing under Provenance as requested in last reporting/provenance meeting. Derik Barseghian
04:29 PM Bug #3634: Define the interface between Provenance and Reporting
Filing under Provenance as requested in last reporting/provenance meeting. Derik Barseghian

11/20/2008

12:40 PM Bug #3607: Create model for the Report Object
Decided to keep this bug open to allow for additions or changes. debi staggs
12:38 PM Bug #3607: Create model for the Report Object
Created the Report Object class based on the initial Reporting requirements. debi staggs

11/17/2008

07:16 AM Bug #3595: Exporting an actor should prompt user to semantically annotate it if it's not already
I think it could also be possible for the actor and/or workflow to have been annotated with a semantic type, but the ... Shawn Bowers

11/14/2008

12:53 PM Bug #3630: Diagram Use Cases for SANPARKS specific actors.
The use case diagram now shows the sequence of steps for each potential use case for SANPARKS. debi staggs
12:51 PM Bug #3607: Create model for the Report Object
This should be a JAVA model that knows how to serialize and de-serialize and we also need to define the serialization... debi staggs
12:44 PM Bug #3673 (Resolved): Create model for the Report Instance (RIO)
Create the model for the Report Instance (RIO). This should be a JAVA model that knows how to serialize and de-seria... debi staggs
05:40 PM Bug #3672: Open/Save Workflow as KAR Archive
This is very similar to bug #3595, which is the same message but to do with the importing of just an actor kar.
See...
Derik Barseghian
04:29 PM Bug #3672 (Resolved): Open/Save Workflow as KAR Archive
Workflow fails to be imported from a kar file
I do the following
File->Open File
Choose getting-started/01-Simp...
Aaron Aaron

11/13/2008

02:54 PM Bug #3669: Tabbed pane interface for holding workflow canvas and additional GUI elements
I like this as well. We just were talking about UI stuff for the reporting subsytem, and one possible UI layout was ... Matt Jones
12:35 PM Bug #3669: Tabbed pane interface for holding workflow canvas and additional GUI elements
Ptolemy has a somewhat primitive tabbed interface in ptII/thales.
To run it, try
$PTII/bin/vergil -single
The interf...
Christopher Brooks
10:32 AM Bug #3669: Tabbed pane interface for holding workflow canvas and additional GUI elements
I like this! Indeed this is a great place for the long-running meme of "Data Central" and "Process Central". For exam... Bertram Ludaescher
10:20 AM Bug #3669 (Resolved): Tabbed pane interface for holding workflow canvas and additional GUI elements
A number of new user interface elements are being developed for Kepler. Some of these require considerable screen re... Timothy McPhillips
02:40 PM Bug #3667: Mock-up Report Designer UI
first draft in SVN:
https://code.kepler-project.org/code/kepler-docs/trunk/teams-and-wg/4-interest-groups/provenance/...
ben leinfelder
09:28 AM Bug #3667 (Resolved): Mock-up Report Designer UI
The general idea is that there is a "palette" of ReportItems on the left of the screen from which a user can drag int... ben leinfelder
11:04 AM Bug #3671 (New): Configurable workspace directory for holding workflows, data, and run products
In bug 3558 I requested that a new directory be created on the user's system for each workflow run, and that outputs ... Timothy McPhillips
10:30 AM Bug #3546: Automatically load trace for a completed run into the provenance browser
I suggest the provenance browser integrated with the Kepler GUI itself, possibly as a tabbed pane in the same space a... Timothy McPhillips
10:14 AM Bug #3648: Create Report format converter
Some key considerations:
-Where are images housed and referenced in the HTML case
-Styling (CSS) for HTML needs to be...
ben leinfelder
10:06 AM Bug #3647: Create Report Assembler
Dynamic ReportItems (i.e. an actor's port) are referenced in the ROML and used to lookup the value[s] in Provenance.
...
ben leinfelder
09:58 AM Bug #3668: Define contents of "Publication Ready Archive"
Yes the reap usecase isn't specific, it requests "an archive that contains the Kepler workflow, all required inputs (... Derik Barseghian
09:41 AM Bug #3668 (New): Define contents of "Publication Ready Archive"
It's still unclear exactly what will be included (user specified?) and how it will be structured.
From past discussi...
ben leinfelder
09:22 AM Bug #3666 (Resolved): Create RIO schema
The ROML describes a report layout and items to be included - but BEFORE a workflow execution.
The RIO contains simi...
ben leinfelder
10:01 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
I agree with Tim -- this would be more aptly called a 'Workflow Run Browser' to differentiate it from the Provenance ... Matt Jones
07:38 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
We have a terminology issue here. The term 'Provenance Browser' has been applied to the graphical user interface con... Timothy McPhillips
05:28 PM Bug #3655 (New): create a Workflow Run Manager with ability to export Publication Ready Archives
Users would like to be able to create 'publication ready archives' as described here:
http://reap.ecoinformatics.org...
Derik Barseghian
05:43 PM Bug #3656 (Resolved): create a Provenance Client
Create a (non-gui) Provenance Client that can interact with Provenance stores.
Among other things, this interface...
Derik Barseghian
04:41 PM Bug #3652 (New): Ensure all Provenance Recording Types record the same things
Recording Type SQL-SPA-v8 records files referenced by string tokens and the workflow moml. This is not done by the ot... Derik Barseghian

11/12/2008

03:28 PM Bug #3649 (Resolved): determine if Provenance has everything needed by Reporting
Make sure provenance is capturing all data needed by Reporting and check that getting things back out in a form reaso... Derik Barseghian
12:34 PM Bug #3648 (Resolved): Create Report format converter
Create a report format converter that generates the .pdf and/or .html files from the Report Instance (RIO) XML. debi staggs
12:32 PM Bug #3647 (Resolved): Create Report Assembler
Create a report assembler that uses the data from Provenance to assemble a specific report instance (RIO) for a given... debi staggs
12:19 PM Bug #3646 (Resolved): Create ROML Schema
Create ROML Schema, which is the report layout specification for the Report Object Model in XML. debi staggs
12:16 PM Bug #3644: Create report layout controller
The report layout controller also generates the Report Object model debi staggs
12:12 PM Bug #3644 (Resolved): Create report layout controller
Create report layout controller that uses the ItemOfInterest model and the ReportItem model to determine the views in... debi staggs
12:13 PM Bug #3645 (Resolved): Create report layout designer
Create report layout designer which is the GUI for the user to design a report. debi staggs
12:04 PM Bug #3607: Create model for the Report Object
ReportObjectModel is referred to as ROML
ReportInstanceModel is referred to as RIO
debi staggs
12:03 PM Bug #3642 (Resolved): Create model for ReportItem
Create model for ReportItem (also see bug for ReportItem hierarchy).
A ReportItem is contained in an ItemOfInterest.
debi staggs
11:50 AM Bug #3641 (Resolved): Create model for ItemOfInterest
Create diagram and model classes required for ItemOfInterest, and ItemsOfInterest List. This is a reporting-specific... debi staggs
11:47 AM Bug #3640 (Resolved): Identify items of interest in workflow.
Create a way for the user to flag items of interest for reporting in the workflow.
Likely to be a right click contex...
debi staggs
11:45 AM Bug #3639 (Resolved): Report design features, Stage 3
Report design features to be implemented for Stage 3.
Multicolumn
User specified sizing of report items [contents].
debi staggs
11:42 AM Bug #3638 (Resolved): Report design features, Stage 2
The following report design features should be included in stage 2.
Section Headers
Pagination and page numbers
...
debi staggs
11:30 AM Bug #3637 (Resolved): Report Design Features, Stage 1
The following report design features should be included in stage 1.
Titles
Subtitles
Sections
Legends
Single s...
debi staggs
11:24 AM Bug #3636 (Resolved): Support multiple Report formats
Create support for multiple report formats including specifically the ability to display reports for print purposes a... debi staggs
11:21 AM Bug #3635: Create ReportItem Type Hierarchy
Each report item implementation should be responsible for rendering it's values. debi staggs
11:11 AM Bug #3635 (Resolved): Create ReportItem Type Hierarchy
Create a type hierarchy for Report Items. It may look something like this:
Dynamic Items
ValueItem,
StringI...
debi staggs
11:05 AM Bug #3634 (Resolved): Define the interface between Provenance and Reporting
Create a diagram and classes for the interface between Provenance and Reporting.
- Get token data for given workfl...
debi staggs
11:01 AM Bug #3633 (In Progress): New token type: By Reference / By Value
Create a new token type to handle references to files that can act as a pointer to a file (or other large data object... debi staggs
10:56 AM Bug #3632 (Resolved): TPC exceedence notification feature
Email alert and notification feature is required as part of the remote workflow execution. Specifically, it will be ... debi staggs
10:53 AM Bug #3631 (Resolved): Create diagram for Scheduler / Reporting interaction.
Create a diagram of the interactions between the workflow execution Scheduler and the Reporting engine.
- Schedule...
debi staggs
10:46 AM Bug #3630 (Resolved): Diagram Use Cases for SANPARKS specific actors.
Modify general use cases for reporting feature to specify SANPARKS actors. debi staggs

11/07/2008

12:18 PM Bug #3608: Create initial class diagrams for the reporting feature.
Specifically for the following classes:
ItemOfInterest
ReportItem
ReportLayoutController
ReportAssembler
debi staggs
12:11 PM Bug #3608 (Resolved): Create initial class diagrams for the reporting feature.
Create class diagrams for the reporting feature. debi staggs
11:56 AM Bug #3607 (Resolved): Create model for the Report Object
Create object models for the Report Object (ROML), and Report Instance (RIML). debi staggs
05:59 PM Bug #3606 (Resolved): ProvenanceRecorder config actor menus
The DB Type menu item needs to be added to the v8 menu.
Also I think the menu ordering should change to be more user...
Derik Barseghian
05:54 PM Bug #3605: problem with ProvenanceRecorder
You'll want to first change the days wf portParam to be 2 instead of 145, so it finishes more quickly. Derik Barseghian
05:51 PM Bug #3605 (Resolved): problem with ProvenanceRecorder
Seeing a new issue with ProvenanceRecorder. It seems to be occurring with both schemas v7 and v8. I've not narrowed i... Derik Barseghian

11/05/2008

02:38 PM Bug #3595 (New): Exporting an actor should prompt user to semantically annotate it if it's not already
When exporting an actor without a semantic annotation, the user is not prompted to do so. When someone then tries to ... Derik Barseghian
 

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