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From 08/05/2010 to 09/03/2010

09/04/2010

06:42 PM Bug #5033: Workflow Run Manager - Allow multiple instances of WRM in one Kepler instance
Currently, in the WRMM a WRM may be shared among X windows (the identifier i'm using for a window is a tableauFrame).... Derik Barseghian

09/03/2010

04:39 PM Bug #5164: Don't show Workflow Run Manager and tag workflow drop-down list on Schedule tab of Workflow Scheduler view
We also don't want to show the "Tag workflow" drop-down list on Schedule tab. We do want it to show on the Server Rep... Jing Tao
12:54 PM Bug #5171 (New): link workflow in components tree to workflow in scheduler view
Once a workflow has been uploaded to a repository, a user might want to schedule it for execution. To make this proce... Daniel Crawl
12:48 PM Bug #5170 (New): uploading a workflow requires a refresh
When a workflow is uploaded to a remote repository, the component tree must be searched again before the workflow app... Daniel Crawl
12:46 PM Bug #5169 (Resolved): select more than one remote repository
The Component Preferences tab only allows a single remote repository to be selected at a time. By selecting more than... Daniel Crawl
12:40 PM Bug #5045: Add a menu to add and configure new remote kepler servers
The workflow scheduler servers in Figs 6 & 7 are the same as the "remote repositories" that can be selected in the ex... Daniel Crawl

09/01/2010

03:15 PM Bug #5168: 'ant change-to' fails at r25610
Fixed. David Welker
09:49 AM Bug #5168 (Resolved): 'ant change-to' fails at r25610
# ant change-to -Dsuite=kepler
Buildfile: build.xml
change-to:
[change-to] Retrieving modules....
[change-to]
...
Daniel Crawl
01:18 AM Bug #5167 (Resolved): Fix bug so that the correct modules.txt is always used.
Now that there are two modules.txt, there are situations where the incorrect modules.txt is sometimes used. David Welker
01:16 AM Bug #5166 (Resolved): Patch Kepler 2.0.0 so that the module manager can switch from Kepler-2.2.0 to Kepler-2.0.0 or Kepler-2.0.1
The issue here are that the significant changes to the build system have changed the way the module manager works. Th... David Welker
01:02 AM Bug #5065: In shared or administrative installations, the ability to store modules.txt and extra modules locally. This way, the module manager will work smoothly on Windows without having to run as an administrator.
I have finally implemented a variation on solution (5). Basically, when a flag is present (.utilize.user.kepler.modul... David Welker
05:55 PM Bug #4801: out of memory
I changed several hashmap/hashtable/vector variables in some static classes, one static hashmap variable in a normal ... jianwu jianwu

08/31/2010

01:16 PM Bug #5045: Add a menu to add and configure new remote kepler servers
I'm going to start working on this, under the assumption we still want a new tab in Preferences where a user can add,... Derik Barseghian
06:23 PM Bug #5165 (Resolved): implement a GUI Save action for KARs
Currently in the GUI we really only have a 'save as...' type action for saving KARs (currently called "Save Archive (... Derik Barseghian
05:10 PM Bug #5164 (Resolved): Don't show Workflow Run Manager and tag workflow drop-down list on Schedule tab of Workflow Scheduler view
We decided it would be confusing to show the WRM on the Schedule tab of the Workflow Scheduler View, but we do want i... Derik Barseghian

08/28/2010

06:13 PM Bug #5050: Automatically filter workflow run manager runs based on selected workflow
Locally I've added code for doing this, invoked by WorkflowRunManager.programticFilter(Map<String, String>columnsAndF... Derik Barseghian

08/27/2010

03:24 PM Bug #4801: out of memory
More analysis shows that one reason for the adding memory is because some singleton classes do not release correspond... jianwu jianwu
05:18 PM Bug #4801: out of memory
I uploaded the allocation call tree view at JProfiler after opening a workflow and closing it. Any suggestions on the... jianwu jianwu
02:41 PM Bug #5163 (New): Items of Interest pane in reporting cannot be used when a sensor site is executing
1) Import a SPAN sensor site.
2) Run the site.
3) Go to reporting and try to expand a canvas component to find a le...
Sean Riddle
10:30 AM Bug #5162: Kepler quits with JVM error (no use-case for reproducing error)
What version of Kepler was this error observed under? Was it an installation, or a development checkout? What modules... Sean Riddle
01:49 AM Bug #5162 (New): Kepler quits with JVM error (no use-case for reproducing error)
From time to time, Kepler finishes it's execution (when closed through File-> Exit).
Following error occurs (it mi...
Michal Owsiak

08/26/2010

04:51 PM Bug #4801: out of memory
Hi Christopher, thanks for your info.
To demonstrate whether the memory increase is because of the kar file opening...
jianwu jianwu
03:24 PM Bug #4801: out of memory
Below is some email about a leak worth looking in to.
--start--
Thanks for pointing this out as this is very timely ...
Christopher Brooks
02:18 PM Bug #4801: out of memory
Madhu and I tried these workflows for a while and found that the memory usage goes up for opening and closing one wor... jianwu jianwu
03:26 PM Bug #5129: adding and removing configuration properties could be made easier
If a new release of a module contains new properties in one of its configuration files, these updates will not appear... Daniel Crawl
05:03 PM Bug #5099: Import Dependent Modules for KAR doesn't work
Done. Derik Barseghian

08/25/2010

04:27 PM Bug #5161 (Resolved): can't always use Module Manager to change to an older patch of a suite
If a module is published
and a patched version of this module is published
and the user has downloaded both
and th...
Derik Barseghian
12:36 PM Bug #5160: problem changing suites using Module Manager
The problem was that Module Manager's AvailableModulesPanel was deleting the new current-suite.txt file, but not rewr... Derik Barseghian
12:22 AM Bug #5160: problem changing suites using Module Manager
I am unable to reproduce this problem. In fact, I was able to change from reporting-2.1.0 to workflow-run-manager-2.1... David Welker

08/24/2010

04:44 PM Bug #5160 (Resolved): problem changing suites using Module Manager
In the test releases area, I've published all 2.1.0 modules.
If I launch kepler (configured to look at the test-are...
Derik Barseghian
12:50 PM Bug #5158: remaining provenance issues for 2.1 release
As requested I've posted a description on the wiki describing these issues:
https://kepler-project.org/developers/int...
Derik Barseghian

08/20/2010

04:24 PM Bug #5157: Devise approach for when patching should occur when changes occur via the module-manager.
I have a solution that is good enough for 2.1. The default is that suites are patched. This default can be changed wi... David Welker
11:28 AM Bug #5157 (Resolved): Devise approach for when patching should occur when changes occur via the module-manager.
Right now, if you change to a suite through the module manager, it is listed as not being patchable. This might be de... David Welker
02:09 PM Bug #5158 (Resolved): remaining provenance issues for 2.1 release
There are some remaining tasks to be done for provenance before we can ship 2.1:
- Dan has some schema changes to pu...
Derik Barseghian
12:23 AM Bug #5143: not getting prompted to upgrade to available patched version in test area
After fixing bug 5147, I have verified that this functionality now works. David Welker
12:08 AM Bug #5147: Resolve issue with modules.txt
I found a way to solve this problem without affecting backwards compatibility. There is new file, called current-suit... David Welker
05:15 PM Bug #4694: workflow run manager - differentiate imported runs
This is done in the 2.1 branch, imported run-rows now a blueish color. Waiting to merge this and other changes into t... Derik Barseghian

08/19/2010

01:57 AM Bug #5156 (Resolved): ant run for kepler 1.0 fails after clean svn checkout
gamma:build-area michalo$ pwd
/Users/michalo/modules.dir/build-area
gamma:build-area michalo$ sw_vers
ProductName...
Michal Owsiak
06:53 PM Bug #5154: Curiously, no progress indicator shows progress during patching.
Done. David Welker

08/18/2010

04:30 PM Bug #4324: ptII/module-info/revision.txt not being updated
Trunks now using ptolemy r58807, and I added the jogl exclude for eclipse.
idea's PtolemyModuleStart already excludes...
Derik Barseghian
03:42 PM Bug #4324: ptII/module-info/revision.txt not being updated
If excluding those from building system, please make sure it's also updated for eclipse building. To update it, just ... jianwu jianwu
03:37 PM Bug #4324: ptII/module-info/revision.txt not being updated
I think the @override warnings are from using Java 1.5.
Adding jogl to the excludes seems reasonable.
data/ontologies...
Christopher Brooks
02:49 PM Bug #4324: ptII/module-info/revision.txt not being updated
I just tried to manually move kepler trunk up to ptolemy head, but I can't compile:
[compile] /Users/derik/dev2/kep...
Derik Barseghian
03:53 PM Bug #5155 (New): To exclude a file or directory requires updating at least four places, only one should be necessary
jianwu <jianwu@sdsc.edu> writes:
>If excluding those from building system, please make sure it's also updated for
...
Christopher Brooks
01:12 PM Bug #5153: Save As... closes all windows associated with a workflow
This happens because ExportArchiveAction's refreshFrameAfterSave is set to true by default. The commit log for this f... Derik Barseghian
01:07 PM Bug #5145: kepler library skin is mostly broken
Jing's done this, we just need to wait for the kepler library metacat to be upgraded to change this to an ER and reta... Derik Barseghian
12:09 PM Bug #5099: Import Dependent Modules for KAR doesn't work
This is implemented now, it just needs further testing once bugs #5147 and #5143 are fixed.
As part of this I've rem...
Derik Barseghian
11:13 PM Bug #5154 (Resolved): Curiously, no progress indicator shows progress during patching.
Although I seem to recall a progress indicator being existent for large patches previously, it seems to have disappea... David Welker
11:10 PM Bug #5143: not getting prompted to upgrade to available patched version in test area
I have finally figured out the source of this problem. This bug is intimately related to 5147. Basically, the reason ... David Welker

08/17/2010

11:04 AM Bug #5153 (New): Save As... closes all windows associated with a workflow
If you're working on a complex workflow, it's not uncommon to have multiple windows open for the one workflow -- wind... Derik Barseghian

08/16/2010

04:45 PM Bug #5152: Errors when saving more than one actors in a kar.
One difference between this situation and CoreActors.kar is that there may be dependencies among actors here, whereas... jianwu jianwu
04:22 PM Bug #5152: Errors when saving more than one actors in a kar.
Disabling the option when multiple actors are selected would be an improvement since it's not working, but being able... Derik Barseghian
04:13 PM Bug #5152 (New): Errors when saving more than one actors in a kar.
To re-produce,
1) drag and drop two actors into canvas, such as 'Display' and 'Constant'
2) choose these two act...
jianwu jianwu
04:29 PM Bug #5151: kar files are not openable if they are generated from actors.
Note that you can also right-click on the canvas and Save Archive (KAR)... and this is the same as File => Save Archi... Derik Barseghian
04:00 PM Bug #5151 (New): kar files are not openable if they are generated from actors.
By right clicking an actor and choosing 'Save Archive (KAR)...', I can save an actor as a kar. The kar will be access... jianwu jianwu
03:31 PM Bug #5150 (New): errors to save an actor as kar if its name has forward slash ('/').
To produce it:
1, drag and drop 'Display' actor into canvas.
2, rename it's name to be '/Display'.
3, right click ...
jianwu jianwu
03:10 PM Bug #5149 (New): kar file saving problems.
I think there are more than one problems for kar file saving, this bug is to track concrete kar file saving problems.... jianwu jianwu
11:55 AM Bug #5142: comma improperly inserted in kar filename rather than a period (.)
Ben, thanks for your info which is very valuable. I'll switch from finding where it becomes ',kar' to how to display ... jianwu jianwu
11:39 AM Bug #5142: comma improperly inserted in kar filename rather than a period (.)
I believe the comma is used intentionally since you cannot use a period/dot in the name of a NamedObj. i don't think ... ben leinfelder
10:46 AM Bug #5142: comma improperly inserted in kar filename rather than a period (.)
After digging a while, I found it is because those kar files are saved with ',kar'. When the Kepler is started, you c... jianwu jianwu
09:09 AM Bug #5148 (New): Remove println from XSLTActor
From Chris:
----------
When you send a string to the XSLTActor it prints the xml document to the terminal.
Could y...
ben leinfelder

08/14/2010

08:28 PM Bug #5095: test kepler and wrp for memory leaks
Ben, cool. Thanks. jianwu jianwu
08:25 PM Bug #5095: test kepler and wrp for memory leaks
The data referenced on DEV is there - I was mistaken earlier about it being missing.
http://dev.nceas.ucsb.edu/knb/me...
ben leinfelder
06:48 PM Bug #5095: test kepler and wrp for memory leaks
We will get your 'jianwu' account (o=SDSC) set up so that you can read the data used in those workflows. Please don't... ben leinfelder
06:44 PM Bug #5095: test kepler and wrp for memory leaks
ben, I think it is for provenance since my current tests are just normal workflows, not those TPC workflows.
Thanks...
jianwu jianwu
06:18 PM Bug #5095: test kepler and wrp for memory leaks
Jianwu,
WHen you say hsqldb - is that for provenance, data, or both? I think one of the things the TPC workflows exer...
ben leinfelder
05:11 PM Bug #5095: test kepler and wrp for memory leaks
After digging a while using JConsole and Eclipse MAT plugin, I didn't found obvious memory leaks. As expected, hsqldb... jianwu jianwu

08/12/2010

04:10 PM Bug #5145: kepler library skin is mostly broken
The interface and the search query back end needs to allow more sophisticated queries than just search, e.g., ability... Ilkay Altintas
04:04 PM Bug #5145: kepler library skin is mostly broken
Those pictures looks great. Thank matt for the information. However, our goal is very simpler - it can display the in... Jing Tao
03:18 PM Bug #5145: kepler library skin is mostly broken
If you are in the process of revamping this stylesheet and presentation, its probably worthwhile to also consider imp... Matt Jones
02:46 PM Bug #5145: kepler library skin is mostly broken
Here are result discuss with ben:
The detail display of kar file will be:
Kar file name (download)
Workflow name 1 ...
Jing Tao
11:35 AM Bug #5145: kepler library skin is mostly broken
For the display details page I'd imagine just looping through each karEntry and displaying it's information:
-name*
-...
ben leinfelder
11:13 AM Bug #5145: kepler library skin is mostly broken
Here is the summary during our discussion (derik, ben and I):
1: Remove the broken image link
2. Add a section to di...
Jing Tao
06:14 PM Bug #5145: kepler library skin is mostly broken
You can see the Browse the other examples I've uploaded here: http://fred.msi.ucsb.edu:8080/knb/
Sorry one of the "ka...
Derik Barseghian
05:30 PM Bug #5145 (Resolved): kepler library skin is mostly broken
The kepler library skin should be reworked now that we're uploading KARs.
http://library.kepler-project.org/kepler/...
Derik Barseghian
03:55 PM Bug #5119: Make switching to a specific set of modules turn off automatic update feature
Thanks David, I'm now using this feature in 2.1 -- when a user with KARCompliance set to Strict restarts for a KAR re... Derik Barseghian
05:17 PM Bug #5119: Make switching to a specific set of modules turn off automatic update feature
The functionality for this is ready to go. Derik just needs to make an appropriate call at the appropriate time.
The...
David Welker
01:40 PM Bug #5147 (Resolved): Resolve issue with modules.txt
Automatic suite resolution has some issues with regard to patching. For example, if reporting-2.1.0 contains a self-r... David Welker
12:11 PM Bug #5137: database exception when using 'ant run' at windows 7.
I can not reproduce the error after a fresh checkout. It's weird that the exception was still there even I did 'ant u... jianwu jianwu
12:11 PM Bug #5140: Ecogrid Authentication Error at Kepler trunk on windows 7.
I can not reproduce the error after a fresh checkout. It's weird that the exception was still there even I did 'ant u... jianwu jianwu
05:59 PM Bug #5140: Ecogrid Authentication Error at Kepler trunk on windows 7.
I tested with 'kepler' account, the exception is exact the same.
If a user uses a fake account, the error pop up di...
jianwu jianwu
05:24 PM Bug #5140: Ecogrid Authentication Error at Kepler trunk on windows 7.
Can you authenticate with valid credentials?
Otherwise, I'm confused why this is a bug - you entered a fake username/...
ben leinfelder
06:10 PM Bug #5121: Provide a button to manually check for updates
The button is now present and working. David Welker
05:53 PM Bug #5146 (Resolved): modifying and saving the composite sinewave actor fails
Trying to make changes to the Sinewave actor that ships with Kepler and then trying to save that actor as a KAR file ... Matt Jones
05:43 PM Bug #5126: Determine whether we need to make installers for all minor releases
Thanks, I'm closing this one.
We run the risk of users not having the most recent version and
of confusing the user ...
Christopher Brooks
05:05 PM Bug #5126: Determine whether we need to make installers for all minor releases
Does anyone object to me closing this? David Welker
05:27 PM Bug #5144 (Resolved): renaming an actor does not persist in saved kar files
When one renames an actor on the canvas, and then selects that actor and chooses 'Save KAR...' in the context menu, a... Matt Jones
05:15 PM Bug #5143 (Resolved): not getting prompted to upgrade to available patched version in test area
I current have published to the test area reporting-2.0.0, reporting-2.1.0, and reporting-2.1.1. If you're run report... Derik Barseghian

08/11/2010

04:56 PM Bug #5142 (Resolved): comma improperly inserted in kar filename rather than a period (.)
When KAR files are saved, with a name such as "foo.kar", then show up incorrectly in the kepler component pane with a... Matt Jones
02:12 PM Bug #5140 (Resolved): Ecogrid Authentication Error at Kepler trunk on windows 7.
From 'Tools->Ecogrid Authentication' menu item, I chose 'DEV' domain and tried a fake username and password. The conn... jianwu jianwu
12:59 PM Bug #5070: Changing the "Available Modules" tab in the Module Manager to "Available Suites and Modules"
Done. David Welker

08/10/2010

12:05 PM Bug #5137 (Resolved): database exception when using 'ant run' at windows 7.
The following exceptions keep showing when I tried to start Kepler using 'ant run'. I had to use 'Ctrl C' to stop it.... jianwu jianwu

08/09/2010

04:48 PM Bug #5136 (Resolved): semantic type checker always returns error
Chris Weed reported:
When I apply a semantic type to an input and output port that are
connected, the semantic ty...
Matt Jones
03:29 PM Bug #4191: Eclipse build is slow the first time "Copying resources to the output folder"
I exclude test directories in ptolemy .classpath file so that the build will be faster. Now building ptolemy takes ab... jianwu jianwu
11:55 AM Bug #4191: Eclipse build is slow the first time "Copying resources to the output folder"
The status I found is that only ptolemy module doesn't filter .svn correctly. I updated the build-area\resources\ecli... jianwu jianwu
02:01 PM Bug #5126: Determine whether we need to make installers for all minor releases
I think we're all in agreement about wanting installers most of the time. However, in the case of 2.1, the changes a... Matt Jones
01:33 PM Bug #5126: Determine whether we need to make installers for all minor releases
If we don't automatically offer updates, then by default, users will
be using 2.0.
This seems wrong. Why bother wit...
Christopher Brooks
01:28 PM Bug #5126: Determine whether we need to make installers for all minor releases
If you have 2.0, you will be able to get 2.1 using the module manager. It will not be automatic. In general, if a min... David Welker
08:09 AM Bug #5126: Determine whether we need to make installers for all minor releases
So, once Kepler-2.1 is released, if I download the 2.0 installer, will
I automatically be updated to 2.1? How will I...
Christopher Brooks
11:24 AM Bug #5133 (Resolved): Authentication and authorization of GPP server
Just open this bug. We need those mechanism in GPP server. Dan can give more details. Jing Tao
09:21 AM Bug #5065: In shared or administrative installations, the ability to store modules.txt and extra modules locally. This way, the module manager will work smoothly on Windows without having to run as an administrator.
To update, this Thursday we had a meeting where, among other things, we discussed how to proceed with this problem. W... David Welker

08/06/2010

04:09 PM Bug #5132 (Resolved): Connecting Workflow Run Manager to remote KAR store should prompt for credentials
We need an authentication and authorization mechanism for client kepler to access remote Provenance DB.
We can bor...
Jing Tao
03:30 PM Bug #5131 (Resolved): Authentication and authorization of Scheduler server
When a user tries to schedule a workflow through a kepler client, the scheduler server should check weather the user ... Jing Tao
03:11 PM Bug #5130 (Resolved): Need a login and logout interface for authenticating a user
When kepler client tries to schedule running a workflow or read data/report from remote Provenance DB, it should have... Jing Tao
02:21 PM Bug #5129 (In Progress): adding and removing configuration properties could be made easier
Now that we've shipped 2.0, if a developer wants to add a new configuration property to a config file, they must firs... Derik Barseghian

08/05/2010

04:32 PM Bug #5122: Develop an approval process for patches
Moving this to 2.2 target in case we want to discuss it further then. Derik Barseghian
04:21 PM Bug #5122: Develop an approval process for patches
To clarify, releasing a patch is a module-level event.
Each minor release will have its own branch in svn, and if two...
Derik Barseghian
04:28 PM Bug #5121: Provide a button to manually check for updates
Also, a button for toggling the automatic checking for updates on startup. Derik Barseghian
04:27 PM Bug #5082: Eclipse build fails because of invalid archive
I believe the bug is because of an extra space in one line of Eclipse.java. Now (at version 25232) ptII.properties.in... jianwu jianwu
04:26 PM Bug #5119: Make switching to a specific set of modules turn off automatic update feature
Since I'm working on the Import Dependent Modules feature, if you can simply provide an methods that I can call to ge... Derik Barseghian
04:23 PM Bug #5126: Determine whether we need to make installers for all minor releases
Today we decided not all minor releases require an installer be released. 2.1 will not have an installer, users will ... Derik Barseghian
04:14 PM Bug #5099: Import Dependent Modules for KAR doesn't work
These changes will be put into a new 2.1 branch, and removed from the 2.0 branch.
Yesterday I made more progress on ...
Derik Barseghian
03:52 PM Bug #5097: kepler.sh accepts a limited number of arguments
It is now fixed by changing bash and bat to:
kepler.sh:
java -classpath build-area/lib/ant.jar:kepler.jar org.kepler...
jianwu jianwu
 

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