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From 08/18/2012 to 09/16/2012

09/14/2012

09:22 PM Bug #5701: CT was removed, demo workflows need to be updated
I updated ct2continuous so that it handles converting
./workflows/demos/SEEK/Elk_Wolf.xml
./workflows/demos/SEEK/Logi...
Christopher Brooks
04:12 PM Bug #5701: CT was removed, demo workflows need to be updated
I removed the CT Director and Integrator from the actor tree, and changed the icon for the Continuous Integrator.
I ...
Daniel Crawl
05:37 PM Bug #5650: actors LidarWorkflowExecute and load WorkflowExecute have duplicated code
Why are all three deprecated?
Shouldn't two be marked deprecated with tags that suggest using the third?
For example...
Christopher Brooks
04:36 PM Bug #5650: actors LidarWorkflowExecute and load WorkflowExecute have duplicated code
I marked all three as deprecated. Daniel Crawl
02:24 PM Bug #5657: kepler moml FileAttribute should probably be a FileParameter
I removed FileAttribute.java since it was probably never used. I checked Kepler 1.0 and https://code.kepler-project.o... Daniel Crawl
02:22 PM Bug #5649: opendap/{DapObjectsToToken,TokenManager,TypeManager} are almost identical
I removed DapObjectsToToken.java and DapObjectsToType.java since they were no longer referenced. Daniel Crawl

09/13/2012

05:50 PM Bug #5485: standalone Module Manager can break Kepler app ability to startup
I updated the Module Manager to look at the selected suite before it exits. If it doesn't look like Kepler will start... Daniel Crawl

09/12/2012

09:40 PM Bug #5637: composite window size & position not always saved
The system works as designed. Marking models dirty because of changes
to the composite windows is incorrect because ...
Christopher Brooks
09:34 PM Bug #5637: composite window size & position not always saved
I'm repopening this because the change results in the user being
prompted to save the model while exiting when all th...
Christopher Brooks
09:31 PM Bug #5188: closing workflow does not save the location change of popup display windows.
I'm closing this as a won't fix because the system works as designed.
I suppose this could be opened as a low-priori...
Christopher Brooks
09:30 PM Bug #5188: closing workflow does not save the location change of popup display windows.
I'm reopening this because I'm going to back out the change to
actor/gui/WindowPropertiesAttribute.java that was savi...
Christopher Brooks
04:40 PM Bug #5485: standalone Module Manager can break Kepler app ability to startup
Jianwu and I figured out how to reproduce this problem:
1. start Kepler, run Module Manager, change to 2.3 suite
Thi...
Daniel Crawl
04:32 PM Bug #5489: Module Manager GUI should fail gracefully if a remote module cannot be downloaded
At version 30650, kepler now throws and checks exception if the url is not accessible. It will popup a dialogue about... jianwu jianwu
11:00 AM Bug #5655: sdm spa Repeat is a duplicate of a Ptolemy actor
Hi Christopher, you are right. Either setting FiringCountLimit of Const actor to be 2, or setting blockSize of Repeat... jianwu jianwu

09/11/2012

11:03 PM Bug #4953: Remote Components category sticks around sometimes
Currently if I search the kepler library for "grow", right-click download the growingDegreeDays.kar, then click the C... Derik Barseghian
07:20 PM Bug #5655: sdm spa Repeat is a duplicate of a Ptolemy actor
ptolemy-repeat-actor-in-PN at
http://bugzilla.ecoinformatics.org/attachment.cgi?id=434
will work if the FiringCountL...
Christopher Brooks
02:11 PM Bug #5655: sdm spa Repeat is a duplicate of a Ptolemy actor
I updated the all four workflows. I'll update Kepler repeat actor documentation and re-target it to 2.X. jianwu jianwu
02:05 PM Bug #5655: sdm spa Repeat is a duplicate of a Ptolemy actor
Could you add the sdf/lib/Repeat PN test case as an attachment?
I'll take a look and possibly fold it in to the Ptole...
Christopher Brooks
01:57 PM Bug #5655: sdm spa Repeat is a duplicate of a Ptolemy actor
I dig more into the two actors and found more differences:
1) sdf/lib/Repeat works with SDF, not PN (no output with ...
jianwu jianwu
02:43 PM Bug #5680: after inline save, demo workflow disappears from tree
I checked in a fix; reassigning to Derik to check. Daniel Crawl

09/10/2012

04:58 PM Bug #5677: SDF Iterations now defaults to AUTO
The xml is updated at version 30616. Printed documentation will be updated along with bug 5625. jianwu jianwu

09/07/2012

11:29 AM Bug #5700: after getting an actors patch, actor changes won't be visible to user until .kepler is removed
Issue a test 2.4.0 release, launch it, instantiate an actor and take a look at it.
Change the actor in code and relea...
Derik Barseghian
11:03 AM Bug #5688: library not working in kepler trunk in windows7
Looks good, closing. Derik Barseghian
10:58 AM Bug #5694: Dragging from a port results in a NPE
I fixed the issue in comment4.
I think Dan knows better the details on the original issue, which I think is no longer...
Derik Barseghian
10:54 AM Bug #5702: GUI bug - Initial actor port positioning is wrong
I'm no longer seeing this. A ptolemy change must have fixed it...
Dan can you replicate anymore?
Derik Barseghian
10:27 AM Bug #5703: GUI bug - Deleting an Actor with connected port causes a diamond relation to be created.
Fixed by Edward:
I've checked in a change that I hope fixes the problem we were
chasing today. The cause is interes...
Christopher Brooks
09:26 AM Bug #5633: Actor/Attribute Search/Find Facility needs menu choices
When a search is done in the workflow outline, the tree is expanded to show the matching items. However, adding a hig... Daniel Crawl

08/31/2012

07:50 PM Bug #5703: GUI bug - Deleting an Actor with connected port causes a diamond relation to be created.
The problem is reproducible after this change:
2012-08-18 17:08 eal
* [r64430] /trunk/ptolemy/actor/Manager.java,
...
Christopher Brooks
04:27 PM Bug #5703: GUI bug - Deleting an Actor with connected port causes a diamond relation to be created.
I think I was wrong about what causes this, more to follow. Christopher Brooks
04:20 PM Bug #5703: GUI bug - Deleting an Actor with connected port causes a diamond relation to be created.
I think is caused by one of these changes:
2012-08-23 21:43 eal
* [r64468] /trunk/diva/canvas/interactor/BasicGra...
Christopher Brooks
01:49 PM Bug #5703 (Resolved): GUI bug - Deleting an Actor with connected port causes a diamond relation to be created.
In the last week or so I've begun seeing a few GUI anomalies on trunk. One is:
Deleting an actor with a connected ...
Derik Barseghian
01:51 PM Bug #5702: GUI bug - Initial actor port positioning is wrong
Dan notes he's been seeing this a lot in actor documentation frames (see attachement). Note how the parameters also o... Derik Barseghian
01:37 PM Bug #5702 (Resolved): GUI bug - Initial actor port positioning is wrong
In the last week or so I've begun seeing a few GUI anomalies on trunk. One is:
Actor port positioning isn't correc...
Derik Barseghian
01:47 PM Bug #5701: CT was removed, demo workflows need to be updated
I updated the demos to use Continous.
The affected demos were
./workflows/demos/getting-started/02-LotkaVolterraPreda...
Christopher Brooks
01:13 PM Bug #5701 (Resolved): CT was removed, demo workflows need to be updated
The CTDirector and associated actors were removed:
----------
Author: cxh
Date: 2011-07-26 14:55:43 -0700 (Tue, 26...
Derik Barseghian

08/30/2012

09:37 PM Bug #5681: Tracking bug for sensor-view-0.9.0 release testing
Released. Closing. Derik Barseghian
09:00 PM Bug #5681: Tracking bug for sensor-view-0.9.0 release testing
I made a KSP page:
https://kepler-project.org/users/add_on_modules/kepler-sensor-platform-and-sensor-view
Going to r...
Derik Barseghian
05:34 PM Bug #5681: Tracking bug for sensor-view-0.9.0 release testing
Moving to 1.x.y target. Derik Barseghian
06:09 PM Bug #5684: Add warning to archiving workflow that it must be run on one machine to not produce overlapping datasets
I added the warning at r30585. Derik Barseghian
05:34 PM Bug #5684: Add warning to archiving workflow that it must be run on one machine to not produce overlapping datasets
Moving to 1.x.y target. Derik Barseghian
06:03 PM Bug #5583: Sensor Simulator controllable through Kepler
Changing to enhancement for making it easier (built in gui in kepler) to launch simulator.
This is less critical now ...
Derik Barseghian
05:34 PM Bug #5583: Sensor Simulator controllable through Kepler
Moving to 1.x.y target. Derik Barseghian
05:57 PM Bug #5683: archiveDataturbineDataToMetacat.kar can fail with an IOException on win7 and XP
I included jing's two changes into the branches at r30470 and r30432. Derik Barseghian
05:34 PM Bug #5683: archiveDataturbineDataToMetacat.kar can fail with an IOException on win7 and XP
Moving to 1.x.y target. Derik Barseghian
05:34 PM Bug #5686: datasets produced by archiveDataturbineDataToMetacat workflow show samples 'sliding' in time
Moving to 1.x.y target. Derik Barseghian
05:34 PM Bug #5685: data isn't always chunked properly
Moving to 1.x.y target. Derik Barseghian
05:34 PM Bug #5202: update existing site layout with span changes
Moving to 1.x.y target. Derik Barseghian
05:34 PM Bug #5675: new ProgressMeter demo workflows give errors when opening in sensor-view-0.9.0
Moving to 1.x.y target. Derik Barseghian
05:34 PM Bug #5363: spanTodt performance
Moving to 1.x.y target. Derik Barseghian
05:34 PM Bug #5679: the workflows in sensor-view should be resaved beneath sensor-view-0.9.0 so users aren't prompted to force open them
Moving to 1.x.y target. Derik Barseghian
05:34 PM Bug #5377: DataTurbine actor fetch time outs (blockTimeout param not used?)
Moving to 1.x.y target. Derik Barseghian
05:34 PM Bug #5341: Belkin f5u409 usb=>serial dongle periodically stops working
Moving to 1.x.y target. Derik Barseghian
05:34 PM Bug #5678: growingDegreeDays workflow at kepler repository has type resolve error
Moving to 1.x.y target. Derik Barseghian
05:01 PM Bug #5633: Actor/Attribute Search/Find Facility needs menu choices
Feel free to refactor the methods in SearchResultsDialog into BasicGraphFrame.
Note that there is this method in Basi...
Christopher Brooks
04:47 PM Bug #5633: Actor/Attribute Search/Find Facility needs menu choices
I added a search panel for the workflow outline.
It'd be nice if clicking on the results highlighted the actors on t...
Daniel Crawl

08/29/2012

09:44 PM Bug #5587: long parameter values get replaced with scrollbar
This is fixed.
I added code to Query:
protected static void _textAreaSetRowsAndRepackParent(JTextArea textArea,
...
Christopher Brooks
08:27 PM Bug #5587: long parameter values get replaced with scrollbar
The problem is that JTextArea should not be used when there is just a single
line and no scroll bar.
http://docs.ora...
Christopher Brooks
08:29 PM Bug #5659: Kepler CaseGraphFrame and CaseGraphTableau have duplicated Ptolemy code.
I'm reassigning this to Dan.
There has to be a better way to do this than to duplicate a bunch of code.
Christopher Brooks
08:21 PM Bug #5457: Mac OS X: Kepler.app should display module error messages in a window
This is fixed.
How I checked is by creating an installer:
ant make-mac-installer -Dversion=2.4.0001
Then installin...
Christopher Brooks

08/28/2012

05:23 PM Bug #5700 (Resolved): after getting an actors patch, actor changes won't be visible to user until .kepler is removed
In testing a pending patch to actors, I found my changes to an actor didn't appear in the library until .kepler was m... Derik Barseghian
05:03 PM Bug #5457: Mac OS X: Kepler.app should display module error messages in a window
I checked in a fix. Reassigning to Christopher to test. Daniel Crawl
03:44 PM Bug #5587: long parameter values get replaced with scrollbar
I'm reopening since this is occurring again. The steps in comment 2 will demonstrate the problem. I verified again th... Daniel Crawl

08/27/2012

06:18 PM Bug #5692: Values not committed to actors
There seams something to it.

Tested clicking on the Commit button in different ways;
Normal clicks - ie without hor...
Ian Ian
11:50 AM Bug #5692: Values not committed to actors
I'm so glad you were able to track it down and provide us w/ these details. If you find anything else related please ... Derik Barseghian
05:15 PM Bug #5699 (New): Change the workflow scheduler server documentation link in the workflow-scheduler-gui module
Currently the the workflow scheduler server documentation points to the svm trunk version. In the next workflow-sched... Jing Tao

08/26/2012

06:40 PM Bug #5692: Values not committed to actors
[Sorry the the delay, I only work Mon-Wed]
Due to rsi I use a pen and tablet for mouse input, the problem seams to b...
Ian Ian

08/25/2012

02:54 AM Bug #5685: data isn't always chunked properly
(The above was an example of a metadata change that didn't make it through to DT.)
(In reply to comment #4)
Derik Barseghian
02:45 AM Bug #5685: data isn't always chunked properly
Sensor actor appears to be properly setting span metadata:
[run] SpanControl.setMetadataForSensor(Batt_Volt,CR8...
Derik Barseghian
02:17 AM Bug #5685: data isn't always chunked properly
Doesn't look like trolling through the archive will be necessary. The same problem of a datapackage containing two da... Derik Barseghian
12:43 AM Bug #5694: Dragging from a port results in a NPE
Fixed this particular issue in reporting's WorkflowManager at r30536.
(In reply to comment #4)
> There's a new issue...
Derik Barseghian

08/24/2012

07:35 PM Bug #5403: Improve the performance of the workflow archiving data from dataturbine to metacat
I forgot to add that the auth error was due to dc=edu instead of dc=org, when trying to save to dev2.
I committed th...
Derik Barseghian
05:49 PM Bug #5403: Improve the performance of the workflow archiving data from dataturbine to metacat
Today I did a bunch of testing of the new (archiveModified.xml -- attached) and the existing (archiveDataturbineDataT... Derik Barseghian
06:27 PM Bug #5685: data isn't always chunked properly
RBNB archive containing suspected missing metadata entries for various sampling rate changes. Get DT to load this, us... Derik Barseghian
06:23 PM Bug #5685: data isn't always chunked properly
I thought about this some more last week, and remembered that I saw some errors when changing sensor sampling rates f... Derik Barseghian
01:58 PM Bug #5210: Focus stolen from user trying to drag components around during execution
This is still a problem on trunk: dragging around an updating sensor actor and you lose your grab on the actor when i... Derik Barseghian
01:02 PM Bug #5588: Enter and Tab behavior has changed in parameter configuration dialog
Looks good. Thanks, Patricia! Daniel Crawl
12:44 PM Bug #5598: parameters appear as white boxes instead of dots
I was able to replicate the WRM fail to Force Open issue w/ this run kar. I opened bug#5697 for it.
(In reply to com...
Derik Barseghian
10:17 AM Bug #5598: parameters appear as white boxes instead of dots
I could not get the workflow run manager to work for me under Windows.
I found https://code.kepler-project.org/code/...
Christopher Brooks
12:41 PM Bug #5697 (New): Workflow Run Manager can fail to Force Open a run kar that Kepler can
After connecting the Workflow Run Manager (2.3.0) to the kepler library and using it to download the attached run kar... Derik Barseghian
11:37 AM Bug #5485: standalone Module Manager can break Kepler app ability to startup
I'm unable to reproduce. Daniel Crawl
10:19 AM Bug #5398: Re-install of Kepler-x.y doesn't overwrite modules.txt
As discussed, new bug is create at bug 5695. close this one. jianwu jianwu
10:18 AM Bug #5695 (New): more automatic module update process.
As discussed for bug 5398, We should discuss the usability perspective of module upgrade management. Some of the proc... jianwu jianwu
08:57 AM Bug #4903: Text in attributes not rendered properly
This screenshot is of outreach/workflows/demos/Matlab/MatlabExpression.xml
when run with
ant vergil -Dmodel=outreach...
Christopher Brooks
08:53 AM Bug #4903: Text in attributes not rendered properly
Also, outreach/workflows/demos/Matlab/MatlabExpression.xml has an an
Attribute that is supposed to show the name of t...
Christopher Brooks
08:50 AM Bug #5677: SDF Iterations now defaults to AUTO
I added ptolemy.moml.filter.AddMissingParameter that will add iterations set
to 0 if it is missing from a SDFDirector...
Christopher Brooks

08/23/2012

06:33 PM Bug #5694: Dragging from a port results in a NPE
There's a new issue on trunk related to NamedObjId: if I drag out a String Constant and configure it with a new value... Derik Barseghian
04:20 PM Bug #5694: Dragging from a port results in a NPE
Christopher, to reproduce this revert r30498 and connect two ports.
The problem is caused by the updates in r64430 t...
Daniel Crawl
03:17 PM Bug #5694: Dragging from a port results in a NPE
I think Dan's comment was referring to a change he made at r30498. After that change I haven't been able to replicate... Derik Barseghian
03:01 PM Bug #5694: Dragging from a port results in a NPE
We can't seem to replicate this bug locally right now.
Edward checked in a fix that might help with the NPE.
I'm go...
Christopher Brooks
02:45 PM Bug #5694 (Resolved): Dragging from a port results in a NPE
Dan wrote:
--start--
The problem is related to the change listener in
org.kepler.moml.NamedObjId. When the workf...
Christopher Brooks
04:27 PM Bug #5637: composite window size & position not always saved
I verified this is fixed for MoMLs and KARs. Thanks, Christopher! Daniel Crawl
03:46 PM Bug #5266: Two empty boxes inside Sinewave actor and other icon problems for attributes
I've uploaded a Sinewave that is not an actor oriented composite and the
screen shot.
The problem persists.
I've re...
Christopher Brooks
12:26 PM Bug #5266: Two empty boxes inside Sinewave actor and other icon problems for attributes
Redispatching to myself so that I can create a non-Actor Oriented Class version
of Sinewave.
Christopher Brooks
12:41 PM Bug #5693 (New): decide on issuing patches so older versions of kepler can upload accessible items to Metacats > 2.0
Do we want older versions of Kepler to be able to upload easily accessible items to Metacat >2.0 repositories? If so ... Derik Barseghian
12:16 PM Bug #4903: Text in attributes not rendered properly
ModelRepaintController is not in the Kepler Library, it should be added.
ShowTypes is in the Kepler Library, but rend...
Christopher Brooks
11:48 AM Bug #5677: SDF Iterations now defaults to AUTO
One fix is to run ptolemy/domains/sdf/kernel/fixSDFIterations on the .xml file.
The real fix would be to create a fi...
Christopher Brooks
11:43 AM Bug #5677: SDF Iterations now defaults to AUTO
Matlab demo workflow needs to be fixed: top level SDF used the default 0, but now is AUTO. Daniel Crawl
11:40 AM Bug #5677: SDF Iterations now defaults to AUTO
current settings:
The 'Auto' means '1' at top level and '0' inside of a composite actor. The
'UNBOUNDED' means '0'. ...
jianwu jianwu

08/22/2012

05:52 PM Bug #5692: Values not committed to actors
I don't see anything unusual there.
I'm running short of ideas. Are you sure you're clicking Commit and not Cancel? ...
Derik Barseghian
05:34 PM Bug #5529: Documentation for some actors such as Run Composite Actor is empty
Daniel, this bug looks fixed (thanks), so I'm closing it. Christopher Brooks
05:18 PM Bug #5529: Documentation for some actors such as Run Composite Actor is empty
I added documentation based on the javadocs to:
AddPointToSVG.xml
AlignmentEditor_Seaview.xml
ArchiveCounter.xml
Arr...
Daniel Crawl
04:45 PM Bug #5188: closing workflow does not save the location change of popup display windows.
Thanks for fixing this, Christopher. I verified it's fixed for MoMLs and KARs. Daniel Crawl
10:58 AM Bug #5688: library not working in kepler trunk in windows7
I've checked in a fix. Reassigning to Derik to verify. Daniel Crawl

08/21/2012

09:33 PM Bug #5692: Values not committed to actors
Thank you for your attention and quick turn around, alas still no joy,
re installed Kepler 2.3
uninstalled java
do...
Ian Ian
07:38 PM Bug #5692: Values not committed to actors
Yes, it's a known issue that 2.2 won't launch from its icon after installing 2.3. You can use the Kepler Module Manag... Derik Barseghian
07:05 PM Bug #5692: Values not committed to actors
Uninstalled Kepler
Re installed 2.3
Reproduced error.
Restarted
Reproduced error.
Uninstalled Kepler 2.3
instal...
Ian Ian
06:35 PM Bug #5692: Values not committed to actors
I cannot replicate. I:
- installed Kepler 2.3.0 in Windows 7
- started Kepler
- dragged out an Rexpression actor from...
Derik Barseghian
05:41 PM Bug #5692 (New): Values not committed to actors
Values not committed to actors
Open new Kepler workflow
Drag RExpression from Components tree
double click RExpr...
Ian Ian

08/20/2012

04:27 PM Bug #5691 (New): parameter choices are not saved
The choices for Parameter.addChoice() are not written when the model is saved. Daniel Crawl

08/18/2012

06:24 PM Bug #4908: actor/director/attribute .xml file documentation needs to be updated
The Kepler documentation for PN was updated in 2010 with the information on how to stop the model:
----
r23513 | bro...
Daniel Crawl
04:57 PM Bug #4068: File Menu should display 5 most recently used workflows
I increased the list size to 10 and updated TextEffigy and ExpressionShellEffigy to not open KARs. Daniel Crawl
04:55 PM Bug #5280: missing command line execution for KAR files
I updated TextEffigy to not open files with binary extensions. I also updated ExpressionShellEffigy to not create a w... Daniel Crawl
04:51 PM Bug #5625: create kepler documentation for 2.4
Add new command-line options for executing KARs, redirecting display actors, etc. See the full list here: https://kep... Daniel Crawl
02:28 AM Bug #5403: Improve the performance of the workflow archiving data from dataturbine to metacat
I got the EcogridWriter changes merged into trunk, finished at r30478.
After this I tried to swap in CreateDataSetsF...
Derik Barseghian
01:14 AM Bug #5690 (New): problems with updateActorDocs
I ran into a few issues updating EcogridWriter documentation using:
./kepler.sh -updateActorDocs actors/resources/ka...
Derik Barseghian
 

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