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From 06/10/2005 to 07/09/2005

07/05/2005

03:29 PM Bug #2138: need helloworld WF
created helloworld.xml in kepler/workflow/test Chad Berkley
02:15 PM Bug #2138 (Resolved): need helloworld WF
we need a hello world workflow for using as an example for new users. Chad Berkley
02:54 PM Bug #2146 (Resolved): Design and implement authentication system for kepler
Since kepler has multiple access points to external networks, a reliable, secure
authentication system is required t...
Chad Berkley
02:49 PM Bug #2145 (Resolved): need ontology storage system
The Kepler ontology storage system needs
1) an API for accessing ontology repositories
2) static copies of ontol...
Chad Berkley
02:46 PM Bug #2144 (Resolved): fix functionality and GUI issues with query builder
The query builder needs to be evaluated for broken functionality and the UI
needs to be looked at and evaluated by l...
Chad Berkley
02:45 PM Bug #2143 (Resolved): fix functionality and GUI issues with query builder
The query builder needs to be evaluated for broken functionality and the UI
needs to be looked at and evaluated by l...
Chad Berkley
02:41 PM Bug #1340: define and implement kepler archive file format (kar)
I forgot to mention, that currently, even though the ksw metadata contains
semantic annotations, they are still using...
Chad Berkley
02:37 PM Bug #1340: define and implement kepler archive file format (kar)
The KSW format has been changed several times. It's current incarnation is 100%
compatible with the current MoML DTD...
Chad Berkley
02:32 PM Bug #2142 (Resolved): new schema for data sources
there needs to be a seperate schema from moml for data sources. efrat and jing
agreed to work on this at the 05 jun...
Chad Berkley
02:31 PM Bug #2141 (Resolved): resultset cache expiration problem
The cache needs to be fixed so that resultsets expire and are purged according
to a set policy. This was discussed ...
Chad Berkley
02:29 PM Bug #1901: Documentation system
At the june 05 kepler meeting, we decided that ilkay would come up with a format
for actor man pages along with doc s...
Chad Berkley
02:26 PM Bug #1838: need user level documentation
we decided to postpone this at the june 05 kepler meeting Chad Berkley
02:20 PM Bug #2140 (New): need dataset extraction WF for documentation/example purposes
We need a simple dataset extraction workflow for documentation/example purposes.
This goes along with the helloworl...
Chad Berkley
02:17 PM Bug #2139 (Resolved): mollusc -> R -> plot WF for examples and documentation uses
We need a simple R workflow for use in examples and documentation. This may
already be built and simply needs to be...
Chad Berkley
02:14 PM Bug #2137 (Resolved): create a docbook format for WF documentation
we need a docbook type format for workflow documentation. We agreed to look
into this at the june 05 kepler meeting...
Chad Berkley

06/27/2005

01:35 PM Bug #2134 (Resolved): More advanced integration with R
The RExpression actor provides a basic, easy-to-use interface between Kepler and
R. It does not, however, handle all...
Dan Higgins
01:28 PM Bug #1342: need R actor
Closing this bug because the RExpression actor has been created. This actor
allows basic R functionality to be easily...
Dan Higgins
01:24 PM Bug #2043: create suite of common statistical actors using R
The RExpression actor has been created as the basic template for this suite of
actors. Some example exist but more ne...
Dan Higgins
01:21 PM Bug #2044: R actor for means and error by group
An RExpression actor with this functionality has been created and is present in
the Kepler CVS distribution as an exa...
Dan Higgins

06/23/2005

10:53 AM Bug #2133 (New): Need ability to update data searches
Currently, when a data search is done, the results are stored in the local
cache. Updates to the ecogrid which would...
Dan Higgins

06/16/2005

03:43 PM Bug #2129 (New): Data sources' schema attribute should not be stored in MoML
1- The schema attribute in the data dousrces should not be stored in the moml
description of an actor. This creates...
Efrat Jaeger

06/13/2005

12:28 PM Bug #2124 (Resolved): provide mechanism for user to see available nodes on ecogrid
provide mechanism for user to see available nodes on ecogrid so users can know
what is available which will help th...
Laura Downey
12:25 PM Bug #2123 (New): need a way to uniquely identify actor in a workflow and locate it
need a way to uniquely identify actor in a workflow that is exposed to the
user so that if one person says look at ...
Laura Downey
12:19 PM Bug #2122 (New): add features to support semantic incompatiblity
System should check for semantic compatibility between ports:
1) either automatically
2) or upon user request to ch...
Laura Downey
12:17 PM Bug #2121 (New): add features to support structural incompatibility
system should check for structural compatability
1) at runtime
2) upon user request
If structural incompatibilit...
Laura Downey
12:09 PM Bug #2120 (New): add visual indicators for non-annotated ports
add visual indicator for non-annotated ports so user knows which ones have
been annotated and which ones haven't
Laura Downey
12:04 PM Bug #2119 (New): create user guide to ontologies for ecologists
need a user guide for ecologists to help them understand ontologies and how
they are used in Kepler and how they ca...
Laura Downey
12:00 PM Bug #2118 (New): allow users to create units based on units in current ontology
Allow users to extend ontology in terms of extending units (make up a new unit
based on units in the current ontology)
Laura Downey

06/10/2005

01:29 PM Bug #2117 (New): mechanism for user to query for semantically compatible actors
provide mechanism for user to query for semantically compatible actors, e.g.,
a menu item for "compatible actors" w...
Laura Downey
01:26 PM Bug #2116 (New): alert user when new ontology is available
provide mechanism for alerting user when a new ontology is available and ask
them whether they want the updated ont...
Laura Downey
01:26 PM Bug #2115: add simple annotation dialog for now
This now works in kepler. Also added a "sibling" viewer to the dialog. Shawn Bowers
01:23 PM Bug #2115 (Resolved): add simple annotation dialog for now
Add a simple annotation dialog for now so users can choose classes from
existing ontology to annotate actors, ports...
Laura Downey
01:15 PM Bug #2114: display search results in both heirarchy and flat list
[decision from May 2005 Estes Park mtg] Laura Downey
01:13 PM Bug #2114 (Resolved): display search results in both heirarchy and flat list
display search results in both heirarchy and flat list; provide way for user
to toggle between both formats
Laura Downey
11:51 AM Bug #2110: Rename "Look Inside" to "Open Actor"
The phrase "Look Inside" is quite prevalent in Ptolemy II docs and models.
We use "Look Inside" for looking inside ac...
Christopher Brooks
11:06 AM Bug #2110 (Resolved): Rename "Look Inside" to "Open Actor"
rename "Look Inside" to "Open Actor" but don't show source code for atomic
actors.
[decision from May 2005 Estes...
Laura Downey
11:11 AM Bug #2113 (In Progress): provide mechanism for saving queries
provide some mechanism so users can save queries to be rerun later
[decision from May 2005 Estes Park mtg]
Laura Downey
11:10 AM Bug #2112 (Resolved): add default data browse heirarchy
In the data tab/pane, add/display a default dat browse heirarchy (similar to
component browse heirarchy shown in ac...
Laura Downey
11:10 AM Bug #2109: make double-click open composite actor
Currently, double click configures the composite actors, much in the way
that double click configures an atomic actor...
Christopher Brooks
11:01 AM Bug #2109 (In Progress): make double-click open composite actor
when user double-clicks actor from the tree or canvas, that should open the
composite actor (same as the "look insi...
Laura Downey
11:08 AM Bug #2111 (Resolved): Add "view data" capability for data sources
Add "view data" capability (and menu item) for data sources so users can view
data before constructing workflow. T...
Laura Downey
10:57 AM Bug #2108 (Resolved): changes to simple search
1) remove "text" and "concept" checkboxes
2) change "go" to "search"
3) make "enter" key execute "search" not "reset"
Laura Downey
10:54 AM Bug #2107 (Resolved): add advance search capability for data
add advance search capability for data - start with curent Morpho advanced
search that includes subject, taxonomic,...
Laura Downey
10:39 AM Bug #2106 (In Progress): allow user to save search results
provide mechanism for user to save search results via "shopping cart" idea
where users marks (checks) which items t...
Laura Downey
10:33 AM Bug #2105 (New): add taxon concept search for data
add capability to do taxon concept searches (remote, local too?)
[decision from May 2005 Estes Park mtg]
Laura Downey
10:31 AM Bug #2104 (New): add concept search for data
add concept search for data (works on both local and remote data)
[decision from May 2005 Estes Park mtg]
Laura Downey
 

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