Activity
From 06/10/2005 to 07/09/2005
07/05/2005
- 03:29 PM Bug #2138: need helloworld WF
- created helloworld.xml in kepler/workflow/test
- 02:15 PM Bug #2138 (Resolved): need helloworld WF
- we need a hello world workflow for using as an example for new users.
- 02:54 PM Bug #2146 (Resolved): Design and implement authentication system for kepler
- Since kepler has multiple access points to external networks, a reliable, secure
authentication system is required t... - 02:49 PM Bug #2145 (Resolved): need ontology storage system
- The Kepler ontology storage system needs
1) an API for accessing ontology repositories
2) static copies of ontol... - 02:46 PM Bug #2144 (Resolved): fix functionality and GUI issues with query builder
- The query builder needs to be evaluated for broken functionality and the UI
needs to be looked at and evaluated by l... - 02:45 PM Bug #2143 (Resolved): fix functionality and GUI issues with query builder
- The query builder needs to be evaluated for broken functionality and the UI
needs to be looked at and evaluated by l... - 02:41 PM Bug #1340: define and implement kepler archive file format (kar)
- I forgot to mention, that currently, even though the ksw metadata contains
semantic annotations, they are still using... - 02:37 PM Bug #1340: define and implement kepler archive file format (kar)
- The KSW format has been changed several times. It's current incarnation is 100%
compatible with the current MoML DTD... - 02:32 PM Bug #2142 (Resolved): new schema for data sources
- there needs to be a seperate schema from moml for data sources. efrat and jing
agreed to work on this at the 05 jun... - 02:31 PM Bug #2141 (Resolved): resultset cache expiration problem
- The cache needs to be fixed so that resultsets expire and are purged according
to a set policy. This was discussed ... - 02:29 PM Bug #1901: Documentation system
- At the june 05 kepler meeting, we decided that ilkay would come up with a format
for actor man pages along with doc s... - 02:26 PM Bug #1838: need user level documentation
- we decided to postpone this at the june 05 kepler meeting
- 02:20 PM Bug #2140 (New): need dataset extraction WF for documentation/example purposes
- We need a simple dataset extraction workflow for documentation/example purposes.
This goes along with the helloworl... - 02:17 PM Bug #2139 (Resolved): mollusc -> R -> plot WF for examples and documentation uses
- We need a simple R workflow for use in examples and documentation. This may
already be built and simply needs to be... - 02:14 PM Bug #2137 (Resolved): create a docbook format for WF documentation
- we need a docbook type format for workflow documentation. We agreed to look
into this at the june 05 kepler meeting...
06/27/2005
- 01:35 PM Bug #2134 (Resolved): More advanced integration with R
- The RExpression actor provides a basic, easy-to-use interface between Kepler and
R. It does not, however, handle all... - 01:28 PM Bug #1342: need R actor
- Closing this bug because the RExpression actor has been created. This actor
allows basic R functionality to be easily... - 01:24 PM Bug #2043: create suite of common statistical actors using R
- The RExpression actor has been created as the basic template for this suite of
actors. Some example exist but more ne... - 01:21 PM Bug #2044: R actor for means and error by group
- An RExpression actor with this functionality has been created and is present in
the Kepler CVS distribution as an exa...
06/23/2005
- 10:53 AM Bug #2133 (New): Need ability to update data searches
- Currently, when a data search is done, the results are stored in the local
cache. Updates to the ecogrid which would...
06/16/2005
- 03:43 PM Bug #2129 (New): Data sources' schema attribute should not be stored in MoML
- 1- The schema attribute in the data dousrces should not be stored in the moml
description of an actor. This creates...
06/13/2005
- 12:28 PM Bug #2124 (Resolved): provide mechanism for user to see available nodes on ecogrid
- provide mechanism for user to see available nodes on ecogrid so users can know
what is available which will help th... - 12:25 PM Bug #2123 (New): need a way to uniquely identify actor in a workflow and locate it
- need a way to uniquely identify actor in a workflow that is exposed to the
user so that if one person says look at ... - 12:19 PM Bug #2122 (New): add features to support semantic incompatiblity
- System should check for semantic compatibility between ports:
1) either automatically
2) or upon user request to ch... - 12:17 PM Bug #2121 (New): add features to support structural incompatibility
- system should check for structural compatability
1) at runtime
2) upon user request
If structural incompatibilit... - 12:09 PM Bug #2120 (New): add visual indicators for non-annotated ports
- add visual indicator for non-annotated ports so user knows which ones have
been annotated and which ones haven't - 12:04 PM Bug #2119 (New): create user guide to ontologies for ecologists
- need a user guide for ecologists to help them understand ontologies and how
they are used in Kepler and how they ca... - 12:00 PM Bug #2118 (New): allow users to create units based on units in current ontology
- Allow users to extend ontology in terms of extending units (make up a new unit
based on units in the current ontology)
06/10/2005
- 01:29 PM Bug #2117 (New): mechanism for user to query for semantically compatible actors
- provide mechanism for user to query for semantically compatible actors, e.g.,
a menu item for "compatible actors" w... - 01:26 PM Bug #2116 (New): alert user when new ontology is available
- provide mechanism for alerting user when a new ontology is available and ask
them whether they want the updated ont... - 01:26 PM Bug #2115: add simple annotation dialog for now
- This now works in kepler. Also added a "sibling" viewer to the dialog.
- 01:23 PM Bug #2115 (Resolved): add simple annotation dialog for now
- Add a simple annotation dialog for now so users can choose classes from
existing ontology to annotate actors, ports... - 01:15 PM Bug #2114: display search results in both heirarchy and flat list
- [decision from May 2005 Estes Park mtg]
- 01:13 PM Bug #2114 (Resolved): display search results in both heirarchy and flat list
- display search results in both heirarchy and flat list; provide way for user
to toggle between both formats - 11:51 AM Bug #2110: Rename "Look Inside" to "Open Actor"
- The phrase "Look Inside" is quite prevalent in Ptolemy II docs and models.
We use "Look Inside" for looking inside ac... - 11:06 AM Bug #2110 (Resolved): Rename "Look Inside" to "Open Actor"
- rename "Look Inside" to "Open Actor" but don't show source code for atomic
actors.
[decision from May 2005 Estes... - 11:11 AM Bug #2113 (In Progress): provide mechanism for saving queries
- provide some mechanism so users can save queries to be rerun later
[decision from May 2005 Estes Park mtg] - 11:10 AM Bug #2112 (Resolved): add default data browse heirarchy
- In the data tab/pane, add/display a default dat browse heirarchy (similar to
component browse heirarchy shown in ac... - 11:10 AM Bug #2109: make double-click open composite actor
- Currently, double click configures the composite actors, much in the way
that double click configures an atomic actor... - 11:01 AM Bug #2109 (In Progress): make double-click open composite actor
- when user double-clicks actor from the tree or canvas, that should open the
composite actor (same as the "look insi... - 11:08 AM Bug #2111 (Resolved): Add "view data" capability for data sources
- Add "view data" capability (and menu item) for data sources so users can view
data before constructing workflow. T... - 10:57 AM Bug #2108 (Resolved): changes to simple search
- 1) remove "text" and "concept" checkboxes
2) change "go" to "search"
3) make "enter" key execute "search" not "reset" - 10:54 AM Bug #2107 (Resolved): add advance search capability for data
- add advance search capability for data - start with curent Morpho advanced
search that includes subject, taxonomic,... - 10:39 AM Bug #2106 (In Progress): allow user to save search results
- provide mechanism for user to save search results via "shopping cart" idea
where users marks (checks) which items t... - 10:33 AM Bug #2105 (New): add taxon concept search for data
- add capability to do taxon concept searches (remote, local too?)
[decision from May 2005 Estes Park mtg] - 10:31 AM Bug #2104 (New): add concept search for data
- add concept search for data (works on both local and remote data)
[decision from May 2005 Estes Park mtg]
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