Activity
From 03/05/2008 to 04/03/2008
04/03/2008
- 04:30 PM Bug #3206 (Resolved): ecogrid error message occurs when running disconnected from network
- [java] ERROR (org.ecoinformatics.seek.datasource.EcogridDataCacheItem:cleanUpCache:373) Couldn't close the output str...
- 01:51 PM Bug #3201: Remove all links to FSM from the GUI
- It looks like this works. I'll close this, but if anyone has any objections to the way this works or thinks it break...
- 01:46 PM Bug #3200: create a 1.0.0 branch in cvs
- The branch is there. See kepler-dev email for checkin instructions.
- 01:12 PM Bug #3167: Customize documentation fails when ports added
- This seems to work for me. I might have fixed it and forgotten to close this bug. reopen this bug if it fails to wo...
- 01:08 PM Bug #3138: remove the distributed options menu item for 1.0 release
- both have now been removed from the release branch.
- 09:24 AM Bug #3205 (New): gdalTranslate actor crashes on bad format and won't work with all gdal formats
- Niels Hoffman reports that the gdalTranslate actor will not work with all of the current formats supported by gdal_tr...
- 08:00 AM Bug #3203: Add dateType
- See also https://chess.eecs.berkeley.edu/bugzilla/show_bug.cgi?id=141
"Plotter should be better about displaying times" - 06:44 AM Bug #2571: position of new elements on screen
- One way to do this would be to translate the coordinates
relative to the location of the mouse. - 06:41 AM Bug #3110: Can't access actors via http
- I can't replicate my own bug (Can't access actors via http),
so I'm closing this.
04/02/2008
- 04:32 PM Bug #3162: ptExecuteConfig.xml depends on removed basicKeplerLibrary.xml
- basicKeplerLibrary is not necessary to run ptexecute and has been removed from
ptExecuteConfig.xml. - 04:15 PM Bug #3097: incorrect classpath in generated ptexecute.sh and momlexecute.sh
- I added a new target to the build file: 'ant build_wfexecute_sh' creates
wfexecute.sh, which accepts -gui/-nogui and ... - 09:13 AM Bug #3097: incorrect classpath in generated ptexecute.sh and momlexecute.sh
- On the 1.0 release conference call, we discussed creating one shell script to replace all of the current ones. There...
- 03:11 PM Bug #2509: FSM & Modal Model Menu selections do not work
- I hadn't realized about the State button being on the toolbar. So it seems that we can successfully create an FSM. S...
- 02:47 PM Bug #2509: FSM & Modal Model Menu selections do not work
- In Ptolemy, a State does appear in the left hand palette.
This state is not present in Kepler.
However, in both Ptol... - 02:28 PM Bug #2509: FSM & Modal Model Menu selections do not work
- Actually, the problem was not with the menu item itself -- the problem is that when you create an FSM model, the acto...
- 02:17 PM Bug #2509: FSM & Modal Model Menu selections do not work
- File | New Workflow | FSM Model
and
File | New Workflow | Modal Model
both work for me.
I'm marking this as fixed, ... - 08:59 AM Bug #2509: FSM & Modal Model Menu selections do not work
- moving to post 1.0
- 02:19 PM Bug #3201: Remove all links to FSM from the GUI
- Ok, I've fixed bug #3022 and bug #2509.
bug #3204 is a RFE for FSM examples to be added to Kepler
Unless someone ind... - 09:38 AM Bug #3201: Remove all links to FSM from the GUI
- Mainly the reason is that we don't have time to re-integrate it and figure out all of the dependencies that we've bro...
- 09:31 AM Bug #3201: Remove all links to FSM from the GUI
- I feel that Kepler should ship with FSM.
What's the reasoning behind not shipping FSM?
There is this bug:
FSM State ... - 09:00 AM Bug #3201 (Resolved): Remove all links to FSM from the GUI
- We are postponing re-adding the FSM items to kepler to post-1.0. All GUI items related to FSM should be removed from...
- 02:15 PM Bug #3204 (New): Kepler should have FSM examples
- Finite State Machines are very powerful, there should
be a Kepler-specific scientific workflow that
illustrates FSMs. - 11:31 AM Bug #3022: FSM State cannot be opened from context menu
- The issue here is that in Ptolemy, the transition menu choices
are "Look Inside", not "Open Actor".
See bug #2110 f... - 08:58 AM Bug #3022: FSM State cannot be opened from context menu
- moving to post 1.0.
- 11:13 AM Bug #3203 (Resolved): Add dateType
- Add a date type to Kepler; being able to pass date tokens between a variety of actors would be nice. My original moti...
- 10:50 AM Bug #3196: Find/Change license on gpl/lgpl code
- Here are the GPL'd and LGPL'd sources Sean Riddle found in the
Kepler source tree (with known authors/copyright hold... - 08:45 AM Bug #3196 (Resolved): Find/Change license on gpl/lgpl code
- We need to find any code and/or libraries that currently are using gpl or lgpl as the license and negotiate with the ...
- 10:30 AM Bug #2531: The link from Kepler intro page to the Ptolemy quick links page is broken
- This bug is ready to be closed.
It should be checked in the release branch and then closed. - 10:16 AM Bug #2531: The link from Kepler intro page to the Ptolemy quick links page is broken
- This bug could be assigned to me.
I just added CCodeGenerator to this list of classes to be
excluded in:
kepler/conf... - 08:51 AM Bug #2531: The link from Kepler intro page to the Ptolemy quick links page is broken
- Ilkay will take this on. We basically need to make sure that any ptII demos that are actually linked to the kepler d...
- 09:27 AM Bug #3172: windows mouse wheel doesn't scroll canvas
- This is fixed in the ptII devel branch. See:
https://chess.eecs.berkeley.edu/bugzilla/show_bug.cgi?id=73
I believe ... - 09:13 AM Bug #3172: windows mouse wheel doesn't scroll canvas
- This should be fixed with the other ui bugs that are outstanding. pushing this to 1.1.
- 09:10 AM Bug #3149: cannot add arbitrary jars when exporting archive
- postponing to 1.1.0 There are numerous items that need to be worked out with this bug. How the user interacts with ...
- 09:09 AM Bug #3130: Add an accelerator (keyboard shortcut) for opening a new blank workflow
- If this bug is easily fixable, do it. If not, postpone it.
- 09:08 AM Bug #3115: Need to check Kepler for memory leaks
- We should run each of the demo workflows with a memory usage analyzer to make sure that no major leaks are found with...
- 09:06 AM Bug #3108: ENM GARP Baseline 3-Actor GARP - Browser Display demo fails with NameDuplication: convertTo?
- We should not be linking to any workflows that do not work. All html links need to be checked and if any broken work...
- 09:04 AM Bug #3126: add R system installation to the Mac installer
- *** Bug 3101 has been marked as a duplicate of this bug. ***
- 08:48 AM Bug #3126: add R system installation to the Mac installer
- We should also try to get this to work with the NMI build.
- 09:04 AM Bug #3101: Inclusion of R executable for Mac and Linux ?
- duplicate bug of 3126
*** This bug has been marked as a duplicate of bug 3126 *** - 09:03 AM Bug #3074: Code library installation issues
- postponing this development until after 1.0. We just don't have the time to get this done. This will be something k...
- 09:02 AM Bug #3202 (Resolved): Remove the workflows directory from the release
- Many of the workflows in this directory are broken, and although they are useful as examples, we do not want to inclu...
- 08:57 AM Bug #3144: add link in OSX Applications folder
- also need to clean up the installer for osx. make sure no windows specific files are included. Sean also agreed to ...
- 08:54 AM Bug #3200 (Resolved): create a 1.0.0 branch in cvs
- We need a branch for 1.0 targeted development so that normal dev can go on in the head. Any items that need to be in...
- 08:52 AM Bug #3122: Get installer size down
- Try to locate all extraneous items and remove them from the installer.
- 08:50 AM Bug #3199 (Resolved): include R 2.6 in the installer
- We are currently including 2.4 in the windows installer. we'd like to upgrade that to 2.6 and also see if we can get...
- 08:49 AM Bug #3198 (Resolved): test dynamic library installations on all platforms
- Make sure that the dylibs work on windows, osx and linux and that they get put in the correct place by the installer.
- 08:41 AM Bug #3195 (Resolved): Check all documentation for 1.0 release
- All of the documentation needs to be checked for accuracy and completeness before the 1.0 release, which is currently...
04/01/2008
- 06:22 PM Bug #3124: Automatically refresh ecogrid sources (endpoints) once per Kepler
- data sources are now refreshed by a new thread that is scheduled to execute 30 seconds (configurable in config.xml) a...
- 02:49 PM Bug #3124: Automatically refresh ecogrid sources (endpoints) once per Kepler
- from 1.0.0 release meeting:
-at startup, queue a thread for refreshing the endpoints after a small delay (~minute) - 03:39 PM Bug #3179: Distinguish "download" and "information" attribute values in eml distributlon online url
- Here are solutions after the 04/01/2008 telephone conference:
1. Modify the query to exclude the eml packages which o... - 03:02 PM Bug #3192: behavior of documentation actor
- I may have found the reason for the loss of my documentation after the first view in Windows XP. When I right-click ...
- 03:01 PM Bug #3154: Documentation missing for DarwinCoreDataSource
- -solicit information from Dave V. and Jing to flesh out documentation in the actor library
-include actor documentati... - 10:11 AM Bug #3147: Get rid of Swing componets in Ecogrid data access classes
- As ben said, this bug was fixed.
03/31/2008
- 11:58 PM Bug #3194 (New): add actors to support Sun Grid
- Chirs Zhu <chris.zhu@sun.com> and others at Sun have contributed actors that allow Kepler to be used as a client for ...
- 04:38 PM Bug #3192 (New): behavior of documentation actor
- Hello. The documentation actor will be an important component of workflows that outlive individual analyst's involve...
- 03:00 PM Bug #3103: Building actor documentation from within Kepler fails
- This is now fixed. The documentation can be edited with the Customize function.
- 01:36 PM Bug #3187: RExpression actor does not share focus
- I think you have it inverted. the frame _won't_ be null in our Kepler case for the R actor. The code block should b...
- 01:16 PM Bug #3187: RExpression actor does not share focus
- Ok, I put the setTitle inside the if block, so this might now work.
What we have is:
if (frame == null) {
... - 11:14 AM Bug #3187: RExpression actor does not share focus
- It's less than ideal to have a bunch of open text editor windows all named "Unnamed".
But I think we can handle it fo... - 12:43 PM Bug #3152: Use EcoGridServicesController with EcoGridWriter actor
- retargeting for after 1.0 - not a high priority.
- 12:38 PM Bug #3147: Get rid of Swing componets in Ecogrid data access classes
- I believe this is fixed. There was spot in the EML actor that was using Swing directly, but I replaced that with Mes...
- 12:18 PM Bug #3138: remove the distributed options menu item for 1.0 release
- We should also remove the DCA actor from the tree to be sure it isn't used, and check the documentation to be sure we...
- 11:24 AM Bug #3184: right-click context menu in RExpression actor
- the best solution for adding a feature like code commenting would be to use an external editor.
there's apparently a ... - 11:17 AM Bug #3185: Ctrl-z does not "undo" in RExpression actor
- This has been added in the ptolemy base classes now.
- 11:16 AM Bug #3186: commit RExpression code changes, but leave actor open
- Rather than just double clicking on the actor, if you "Open" the actor, the expression editing window will appear. c...
- 11:15 AM Bug #3191: Merge TextEditor changes with ptII source
- closing this bug - I'm happy with the undo/redo. (thanks, cxh)
03/29/2008
- 08:53 PM Bug #3191: Merge TextEditor changes with ptII source
- Ok, I updated Query, UndoListener and TextEditor in the ptII tree and
removed these files from kepler/src/exp/ptolemy... - 08:46 PM Bug #3187: RExpression actor does not share focus
- The change to TextEditorTableau is marked below
if (frame == null) {
frame = new TextEditor(title...
03/28/2008
- 02:48 PM Bug #3191 (Resolved): Merge TextEditor changes with ptII source
- These changes from src/exp in Kepler should be included in the ptII tree:
src/exp/ptolemy/gui
Query.java
UndoL...
03/27/2008
- 04:54 PM Bug #3187: RExpression actor does not share focus
- Until a change is included in ptII code (specifically ptolemy.actor.gui.TextEditorTableau), only one RExpresison text...
- 03:26 PM Bug #3187: RExpression actor does not share focus
- By using the ptolemy.actor.gui.TextEditor when "Open Actor" is invoked on the RExpression we can support having multi...
- 03:28 PM Bug #3185: Ctrl-z does not "undo" in RExpression actor
- from kepler-dev email that i sent:
---
After looking at this again, I realized it could be made even more
generic b... - 10:19 AM Bug #3185: Ctrl-z does not "undo" in RExpression actor
- Locally, I have implemented an UndoableEditListener for the JTextArea that is used in ptolemy.gui.Query along with so...
- 03:09 PM Bug #3186: commit RExpression code changes, but leave actor open
- Proposed implementation (working locally for me):
By using the ptolemy.actor.gui.TextEditor when "Open Actor" is invo...
03/26/2008
- 04:01 PM Bug #3189 (New): CommandLineExec needs ability to kill spawned process
- Many times when authoring/debugging a workflow, the process spawned by the command line actor runs infinitely. It wo...
03/25/2008
- 05:29 PM Bug #3187 (In Progress): RExpression actor does not share focus
- It would be nice to be able to change the focus from an open RExpression actor to another Kepler window. Two cases t...
- 05:18 PM Bug #3186 (Resolved): commit RExpression code changes, but leave actor open
- R-script development within an RExpression actor can get pretty tedious. For example, when you add a line of code a...
- 05:06 PM Bug #3185 (Resolved): Ctrl-z does not "undo" in RExpression actor
- Ctrl-c (copy) and Ctrl-v (paste) work as expected in the RExpression actor. Is it possible to also make Ctrl-z (undo...
- 05:02 PM Bug #3184 (Resolved): right-click context menu in RExpression actor
- One thing that would make Kepler a more friendly environment for developing analyses would be the ability to highligh...
03/24/2008
- 07:39 PM Bug #3002: Copy/Paste of a relation (diamond)
- When ports and relations are created from the toolbar they now don't overlap.
This should help prevent problems with ... - 10:53 AM Bug #3182: check for consistent licensing text in all source files
- No, I think this is a separate item from the copyright check, even though we might do them simultaneously with a sing...
- 10:47 AM Bug #3182: check for consistent licensing text in all source files
- Should this be combined with "Copyrights of subpackages need to be handled"
http://bugzilla.ecoinformatics.org/show_b... - 10:18 AM Bug #3182 (Resolved): check for consistent licensing text in all source files
- Kepler is licensed under the BSD. We need to check that all code is properly licensed this way throughout the releas...
- 10:28 AM Bug #3183 (New): Return/Enter does not select default button in dialog boxes
- Pressing Return/Enter does not select the default button (usually 'Commit') of dialogs. This should be the case accor...
03/22/2008
- 11:10 AM Bug #2870: Copy/Paste of composite actors
- I think I have this fixed by making changes to moml/MoMLVariableChecker.java
I've added a test case:
ptII/ptolemy/mo...
03/21/2008
- 04:20 PM Bug #3056: unable to print output of Display actor
- The "Print" menu choice is now enabled in Display. The change was to ptolemy/actor/gui/TextEditor.java
Getting multi...
03/19/2008
- 01:58 PM Bug #3107: http links don't work: Unsupported file type or connection not supported
- I'm closing this. We can revisit this problem when ptII and Kepler require Java 1.6. At that point, we can change t...
- 01:55 PM Bug #3107: http links don't work: Unsupported file type or connection not supported
- I can no longer reproduce this? I'm not sure what's up, or what changed?
I tried it on the same machine (my laptop w...
03/18/2008
- 04:00 PM Bug #3179: Distinguish "download" and "information" attribute values in eml distributlon online url
- Yeah. So here is my approach:
I am not exactly sure how hard the query will be implemented, but I don't think it will... - 03:50 PM Bug #3179: Distinguish "download" and "information" attribute values in eml distributlon online url
- Whether or not the query is altered, I think Kepler will still need to handle both types of distribution urls. I'm t...
- 03:45 PM Bug #3179: Distinguish "download" and "information" attribute values in eml distributlon online url
- from Jing:
I am not exactly sure how hard the query will be implemented, but I don't
think it will be too hard. Howe... - 03:40 PM Bug #3179 (Resolved): Distinguish "download" and "information" attribute values in eml distributlon online url
- I agree, I don't think it does handle this, but this is a bug in my opinion. It should distinguish these URL types. ...
- 03:10 PM Bug #3135: semantic type and class params need special handling in doc window
- Fixed this by adding an exclusion list to the configuration. the docviewer can now take a list of attribute names no...
03/17/2008
- 05:32 PM Bug #3107: http links don't work: Unsupported file type or connection not supported
- I agree that ptolemy.actor.gui.BrowserLauncher is somewhat sketchy.
However, it works fine for me under Ptolemy and f... - 04:47 PM Bug #3107: http links don't work: Unsupported file type or connection not supported
- Chad,
The BareBoneBrowserLaunch you reference in http://www.centerkey.com/java/browser/ is already in Kepler. Che... - 02:35 PM Bug #3107: http links don't work: Unsupported file type or connection not supported
- This looks like a bug in the somewhat sketchy class ptolemy.actor.gui.BrowserLauncher. This class was written in 200...
- 01:59 PM Bug #3107: http links don't work: Unsupported file type or connection not supported
- I've been looking into this and it appears to be a problem on windows and linux but not OSX. The BrowserEffigy$Facto...
- 01:33 PM Bug #3036: Need to be able to delete actors from the library
- There is now a right click menu item to remove a component from the library. It removes the component from the cache...
03/13/2008
- 11:41 AM Bug #3150: Need to add PTII Python actors back into Kepler
- The Python actor(s) now operate correctly in Kepler. Several examples workflows are now in the demos/Python directory...
03/12/2008
- 11:57 PM Bug #3173: Improve data frame handling between RExpression actors
- The R actor now uses the serialize/unserialize method described by jim for data frames and also for other complex R o...
- 10:40 AM Bug #3173: Improve data frame handling between RExpression actors
- tried with my system (running R v2.4.1) and it does work.
Jim pointed out that my version of R does not use "1L" to e...
03/11/2008
- 08:36 PM Bug #3173 (Resolved): Improve data frame handling between RExpression actors
- The short version: true data types might not be preserved when using text file-based serialization of data frames bet...
- 04:04 PM Bug #3172 (New): windows mouse wheel doesn't scroll canvas
- Kepler Version: Release Candidate 1
OS: Windows xp
I have a usb mouse. When a workflow exceeds the window size,...
03/06/2008
- 02:39 PM Bug #3127: workflows can open off the screen
- I changed ptolemy/actor/gui/WindowPropertiesAttribute.java so that if any part of the window is off of the screen, th...
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