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From 08/25/2012 to 09/23/2012

09/21/2012

02:38 PM Bug #5279: HSQL databases use default account
I've updated org.kepler.util.sql.HSQL to generate a password for the HSQL databases. The password is stored in a text... Daniel Crawl

09/20/2012

09:38 PM Bug #5659: Kepler CaseGraphFrame and CaseGraphTableau have duplicated Ptolemy code.
One option would be to move more of the KeplerGraphFrame features in to BasicGraphFrame.
> CaseGraphFrame would hav...
Christopher Brooks
04:26 PM Bug #5659: Kepler CaseGraphFrame and CaseGraphTableau have duplicated Ptolemy code.
One solution is to move as much of the duplicated code as possible into static methods. There would still need to be ... Daniel Crawl
03:44 PM Bug #5650: actors LidarWorkflowExecute and load WorkflowExecute have duplicated code
I took another look at these three classes and found that WorkflowExecute and ModelService are almost a subset of Lid... Daniel Crawl
10:39 AM Bug #5655: sdm spa Repeat is a duplicate of a Ptolemy actor
The changes are done based on comment 11. The bug is fixed at kepler version 30712 and ptolemy version 64693. jianwu jianwu

09/19/2012

04:21 PM Bug #5712: illegal option chmod error during Kepler startup
Yes, this is caused by the call on line 104 of tagging/src/org/kepler/module/tagging/Initialize.java. Sean Riddle
03:53 PM Bug #5712: illegal option chmod error during Kepler startup
In org.kepler.ssh.LocalExec, copyFile() calls chmod --reference. This option does not exist on Mac. I bet this method... Daniel Crawl
04:18 PM Bug #5489: Module Manager GUI should fail gracefully if a remote module cannot be downloaded
Ok I tried Jianwu's scenario is comment4 and got the new error alert, so that works. "Downloading" messages still app... Derik Barseghian
03:59 PM Bug #5489: Module Manager GUI should fail gracefully if a remote module cannot be downloaded
Re: comment6, this was likely caused by having 0-sized zip files in my trunk kepler.modules checkout. Last night I fo... Derik Barseghian
04:17 PM Bug #5716 (Resolved): Module Manager should only print Downloading messages when actually downloading
When switching to a suite using the MM, don't print Downloading messages when downloads don't occur because the user ... Derik Barseghian
11:36 AM Bug #5715 (New): Actor Reference documentation
this doc hasn't changed since 2.0, but in 2.4, many actors are visible for the first time. So we might need to update... jianwu jianwu
11:34 AM Bug #5714 (Resolved): user manual documentation for 2.4.
This documentation has 10 sections and 385 pages. It has to be split into sub-tasks. jianwu jianwu
11:31 AM Bug #5713 (Resolved): getting-started-guide documentation for Kepler 2.4
This documentation has around 50 pages and 8 Sections. It might need be split into more sub-tasks. jianwu jianwu

09/18/2012

05:29 PM Bug #5489: Module Manager GUI should fail gracefully if a remote module cannot be downloaded
First I just tried to test downloading kepler-2.3.0 from kepler trunk, but now I just instantly get a bunch of Downlo... Derik Barseghian
05:14 PM Bug #5489: Module Manager GUI should fail gracefully if a remote module cannot be downloaded
it works for me at version 30710. re-assign Derik to test. jianwu jianwu
05:20 PM Bug #5712 (Resolved): illegal option chmod error during Kepler startup
Today during startup of trunk I started noticing this message on mac 10.8.1:
[run] Building Kars...
[...
Derik Barseghian
04:30 PM Bug #5711 (Resolved): post release process cheatsheet
Post release process notes, even if incomplete and sketchy, for others to see. Derik Barseghian
04:04 PM Bug #5655: sdm spa Repeat is a duplicate of a Ptolemy actor
after discussion, we will go with comment 11. jianwu jianwu
04:01 PM Bug #5650: actors LidarWorkflowExecute and load WorkflowExecute have duplicated code
Check the deprecated tags, they should say why the actor was deprecated and
there should be FIXMEs that say where the...
Christopher Brooks
02:01 PM Bug #5259: kepler/util/src/util/LineReader.java should be updated to match Ptolemy sources
I removed the Kepler LineReader since it does not appear in the actor tree. Daniel Crawl
12:02 PM Bug #5259: kepler/util/src/util/LineReader.java should be updated to match Ptolemy sources
The Kepler version does contain this bug.
I'd like to remove the Kepler duplicate, but it needs a more detailed looki...
Derik Barseghian
12:45 PM Bug #5690: problems with updateActorDocs
1) I think the LSID revision should get incremented whenever the actor changes to make it easier (still not easy enou... Derik Barseghian
12:29 PM Bug #5690: problems with updateActorDocs
2) I fixed it so that the port names to match the name returned by Port.getName(). (It was already doing this for par... Daniel Crawl
11:56 AM Bug #5691: parameter choices are not saved
If I add choices to a parameter in a workflow, I would like those choices available the next time I open the workflow... Daniel Crawl
11:41 AM Bug #5651: WebService, WebServiceStub and MessageBasedWebService have duplicate code
I marked WebServiceStub and MessageBasedWebService as deprecated: Use org.sdm.spa.WebService or org.sdm.spa.WSWithCom... Daniel Crawl

09/17/2012

09:44 PM Bug #5662: resurgence ArrayAccumulator is a duplicate of Ptolemy ArrayAccumulate
These actors do different things. Kepler's was poorly named; I renamed ArrayAccumulator to Array To String, added the... Derik Barseghian
08:58 PM Bug #5652: Geon Scp and spa Ssh2Exec have duplicate code.
I marked these two files with FIXME notes at r30698:
Log:
Add FIXME note to these files about duplicate code that sho...
Derik Barseghian
08:36 PM Bug #5653: Geon ArrayContains is a duplicate of a Ptolemy actor
Kepler already uses the Ptolemy version of ArrayContains. The implementations were essentially identical. I removed ... Derik Barseghian
08:21 PM Bug #5654: Geon ArrayRemoveElement is a duplicate of a Ptolemy actor
I compared these two in code and in a test workflow, and the kepler version provides the same behavior, so I've remov... Derik Barseghian
06:27 PM Bug #5656: sdm spa StringConst is a duplicate of a Ptolemy actor
I've deleted this actor at r30694 because it wasn't even in the tree, and the only thing special about it seemed to b... Derik Barseghian
06:03 PM Bug #5680: after inline save, demo workflow disappears from tree
I'm not seeing them disappear now at r30693. Initially I did see the problem with the saved workflow appearing at the... Derik Barseghian
01:00 PM Bug #5642: Kepler should have access to the ShowTypes attribute
I reopening this, the bug is that the ShowTypes attribute is not labeled
when it is dragged in the canvas inside Kepl...
Christopher Brooks
12:09 PM Bug #5642: Kepler should have access to the ShowTypes attribute
I'm tentatively closing this bug. If people feel strongly that the default behavior of this actor should be that the ... Sean Riddle
11:46 AM Bug #5648: FileCopier code duplication
Closed by r30689. Duplicate code removed and call to such code was replaced to a call to the canonical file copier im... Sean Riddle

09/14/2012

09:22 PM Bug #5701: CT was removed, demo workflows need to be updated
I updated ct2continuous so that it handles converting
./workflows/demos/SEEK/Elk_Wolf.xml
./workflows/demos/SEEK/Logi...
Christopher Brooks
04:12 PM Bug #5701: CT was removed, demo workflows need to be updated
I removed the CT Director and Integrator from the actor tree, and changed the icon for the Continuous Integrator.
I ...
Daniel Crawl
05:37 PM Bug #5650: actors LidarWorkflowExecute and load WorkflowExecute have duplicated code
Why are all three deprecated?
Shouldn't two be marked deprecated with tags that suggest using the third?
For example...
Christopher Brooks
04:36 PM Bug #5650: actors LidarWorkflowExecute and load WorkflowExecute have duplicated code
I marked all three as deprecated. Daniel Crawl
02:24 PM Bug #5657: kepler moml FileAttribute should probably be a FileParameter
I removed FileAttribute.java since it was probably never used. I checked Kepler 1.0 and https://code.kepler-project.o... Daniel Crawl
02:22 PM Bug #5649: opendap/{DapObjectsToToken,TokenManager,TypeManager} are almost identical
I removed DapObjectsToToken.java and DapObjectsToType.java since they were no longer referenced. Daniel Crawl

09/13/2012

05:50 PM Bug #5485: standalone Module Manager can break Kepler app ability to startup
I updated the Module Manager to look at the selected suite before it exits. If it doesn't look like Kepler will start... Daniel Crawl

09/12/2012

09:40 PM Bug #5637: composite window size & position not always saved
The system works as designed. Marking models dirty because of changes
to the composite windows is incorrect because ...
Christopher Brooks
09:34 PM Bug #5637: composite window size & position not always saved
I'm repopening this because the change results in the user being
prompted to save the model while exiting when all th...
Christopher Brooks
09:31 PM Bug #5188: closing workflow does not save the location change of popup display windows.
I'm closing this as a won't fix because the system works as designed.
I suppose this could be opened as a low-priori...
Christopher Brooks
09:30 PM Bug #5188: closing workflow does not save the location change of popup display windows.
I'm reopening this because I'm going to back out the change to
actor/gui/WindowPropertiesAttribute.java that was savi...
Christopher Brooks
04:40 PM Bug #5485: standalone Module Manager can break Kepler app ability to startup
Jianwu and I figured out how to reproduce this problem:
1. start Kepler, run Module Manager, change to 2.3 suite
Thi...
Daniel Crawl
04:32 PM Bug #5489: Module Manager GUI should fail gracefully if a remote module cannot be downloaded
At version 30650, kepler now throws and checks exception if the url is not accessible. It will popup a dialogue about... jianwu jianwu
11:00 AM Bug #5655: sdm spa Repeat is a duplicate of a Ptolemy actor
Hi Christopher, you are right. Either setting FiringCountLimit of Const actor to be 2, or setting blockSize of Repeat... jianwu jianwu

09/11/2012

11:03 PM Bug #4953: Remote Components category sticks around sometimes
Currently if I search the kepler library for "grow", right-click download the growingDegreeDays.kar, then click the C... Derik Barseghian
07:20 PM Bug #5655: sdm spa Repeat is a duplicate of a Ptolemy actor
ptolemy-repeat-actor-in-PN at
http://bugzilla.ecoinformatics.org/attachment.cgi?id=434
will work if the FiringCountL...
Christopher Brooks
02:11 PM Bug #5655: sdm spa Repeat is a duplicate of a Ptolemy actor
I updated the all four workflows. I'll update Kepler repeat actor documentation and re-target it to 2.X. jianwu jianwu
02:05 PM Bug #5655: sdm spa Repeat is a duplicate of a Ptolemy actor
Could you add the sdf/lib/Repeat PN test case as an attachment?
I'll take a look and possibly fold it in to the Ptole...
Christopher Brooks
01:57 PM Bug #5655: sdm spa Repeat is a duplicate of a Ptolemy actor
I dig more into the two actors and found more differences:
1) sdf/lib/Repeat works with SDF, not PN (no output with ...
jianwu jianwu
02:43 PM Bug #5680: after inline save, demo workflow disappears from tree
I checked in a fix; reassigning to Derik to check. Daniel Crawl

09/10/2012

04:58 PM Bug #5677: SDF Iterations now defaults to AUTO
The xml is updated at version 30616. Printed documentation will be updated along with bug 5625. jianwu jianwu

09/07/2012

11:29 AM Bug #5700: after getting an actors patch, actor changes won't be visible to user until .kepler is removed
Issue a test 2.4.0 release, launch it, instantiate an actor and take a look at it.
Change the actor in code and relea...
Derik Barseghian
11:03 AM Bug #5688: library not working in kepler trunk in windows7
Looks good, closing. Derik Barseghian
10:58 AM Bug #5694: Dragging from a port results in a NPE
I fixed the issue in comment4.
I think Dan knows better the details on the original issue, which I think is no longer...
Derik Barseghian
10:54 AM Bug #5702: GUI bug - Initial actor port positioning is wrong
I'm no longer seeing this. A ptolemy change must have fixed it...
Dan can you replicate anymore?
Derik Barseghian
10:27 AM Bug #5703: GUI bug - Deleting an Actor with connected port causes a diamond relation to be created.
Fixed by Edward:
I've checked in a change that I hope fixes the problem we were
chasing today. The cause is interes...
Christopher Brooks
09:26 AM Bug #5633: Actor/Attribute Search/Find Facility needs menu choices
When a search is done in the workflow outline, the tree is expanded to show the matching items. However, adding a hig... Daniel Crawl

08/31/2012

07:50 PM Bug #5703: GUI bug - Deleting an Actor with connected port causes a diamond relation to be created.
The problem is reproducible after this change:
2012-08-18 17:08 eal
* [r64430] /trunk/ptolemy/actor/Manager.java,
...
Christopher Brooks
04:27 PM Bug #5703: GUI bug - Deleting an Actor with connected port causes a diamond relation to be created.
I think I was wrong about what causes this, more to follow. Christopher Brooks
04:20 PM Bug #5703: GUI bug - Deleting an Actor with connected port causes a diamond relation to be created.
I think is caused by one of these changes:
2012-08-23 21:43 eal
* [r64468] /trunk/diva/canvas/interactor/BasicGra...
Christopher Brooks
01:49 PM Bug #5703 (Resolved): GUI bug - Deleting an Actor with connected port causes a diamond relation to be created.
In the last week or so I've begun seeing a few GUI anomalies on trunk. One is:
Deleting an actor with a connected ...
Derik Barseghian
01:51 PM Bug #5702: GUI bug - Initial actor port positioning is wrong
Dan notes he's been seeing this a lot in actor documentation frames (see attachement). Note how the parameters also o... Derik Barseghian
01:37 PM Bug #5702 (Resolved): GUI bug - Initial actor port positioning is wrong
In the last week or so I've begun seeing a few GUI anomalies on trunk. One is:
Actor port positioning isn't correc...
Derik Barseghian
01:47 PM Bug #5701: CT was removed, demo workflows need to be updated
I updated the demos to use Continous.
The affected demos were
./workflows/demos/getting-started/02-LotkaVolterraPreda...
Christopher Brooks
01:13 PM Bug #5701 (Resolved): CT was removed, demo workflows need to be updated
The CTDirector and associated actors were removed:
----------
Author: cxh
Date: 2011-07-26 14:55:43 -0700 (Tue, 26...
Derik Barseghian

08/30/2012

09:37 PM Bug #5681: Tracking bug for sensor-view-0.9.0 release testing
Released. Closing. Derik Barseghian
09:00 PM Bug #5681: Tracking bug for sensor-view-0.9.0 release testing
I made a KSP page:
https://kepler-project.org/users/add_on_modules/kepler-sensor-platform-and-sensor-view
Going to r...
Derik Barseghian
05:34 PM Bug #5681: Tracking bug for sensor-view-0.9.0 release testing
Moving to 1.x.y target. Derik Barseghian
06:09 PM Bug #5684: Add warning to archiving workflow that it must be run on one machine to not produce overlapping datasets
I added the warning at r30585. Derik Barseghian
05:34 PM Bug #5684: Add warning to archiving workflow that it must be run on one machine to not produce overlapping datasets
Moving to 1.x.y target. Derik Barseghian
06:03 PM Bug #5583: Sensor Simulator controllable through Kepler
Changing to enhancement for making it easier (built in gui in kepler) to launch simulator.
This is less critical now ...
Derik Barseghian
05:34 PM Bug #5583: Sensor Simulator controllable through Kepler
Moving to 1.x.y target. Derik Barseghian
05:57 PM Bug #5683: archiveDataturbineDataToMetacat.kar can fail with an IOException on win7 and XP
I included jing's two changes into the branches at r30470 and r30432. Derik Barseghian
05:34 PM Bug #5683: archiveDataturbineDataToMetacat.kar can fail with an IOException on win7 and XP
Moving to 1.x.y target. Derik Barseghian
05:34 PM Bug #5686: datasets produced by archiveDataturbineDataToMetacat workflow show samples 'sliding' in time
Moving to 1.x.y target. Derik Barseghian
05:34 PM Bug #5685: data isn't always chunked properly
Moving to 1.x.y target. Derik Barseghian
05:34 PM Bug #5202: update existing site layout with span changes
Moving to 1.x.y target. Derik Barseghian
05:34 PM Bug #5675: new ProgressMeter demo workflows give errors when opening in sensor-view-0.9.0
Moving to 1.x.y target. Derik Barseghian
05:34 PM Bug #5363: spanTodt performance
Moving to 1.x.y target. Derik Barseghian
05:34 PM Bug #5679: the workflows in sensor-view should be resaved beneath sensor-view-0.9.0 so users aren't prompted to force open them
Moving to 1.x.y target. Derik Barseghian
05:34 PM Bug #5377: DataTurbine actor fetch time outs (blockTimeout param not used?)
Moving to 1.x.y target. Derik Barseghian
05:34 PM Bug #5341: Belkin f5u409 usb=>serial dongle periodically stops working
Moving to 1.x.y target. Derik Barseghian
05:34 PM Bug #5678: growingDegreeDays workflow at kepler repository has type resolve error
Moving to 1.x.y target. Derik Barseghian
05:01 PM Bug #5633: Actor/Attribute Search/Find Facility needs menu choices
Feel free to refactor the methods in SearchResultsDialog into BasicGraphFrame.
Note that there is this method in Basi...
Christopher Brooks
04:47 PM Bug #5633: Actor/Attribute Search/Find Facility needs menu choices
I added a search panel for the workflow outline.
It'd be nice if clicking on the results highlighted the actors on t...
Daniel Crawl

08/29/2012

09:44 PM Bug #5587: long parameter values get replaced with scrollbar
This is fixed.
I added code to Query:
protected static void _textAreaSetRowsAndRepackParent(JTextArea textArea,
...
Christopher Brooks
08:27 PM Bug #5587: long parameter values get replaced with scrollbar
The problem is that JTextArea should not be used when there is just a single
line and no scroll bar.
http://docs.ora...
Christopher Brooks
08:29 PM Bug #5659: Kepler CaseGraphFrame and CaseGraphTableau have duplicated Ptolemy code.
I'm reassigning this to Dan.
There has to be a better way to do this than to duplicate a bunch of code.
Christopher Brooks
08:21 PM Bug #5457: Mac OS X: Kepler.app should display module error messages in a window
This is fixed.
How I checked is by creating an installer:
ant make-mac-installer -Dversion=2.4.0001
Then installin...
Christopher Brooks

08/28/2012

05:23 PM Bug #5700 (Resolved): after getting an actors patch, actor changes won't be visible to user until .kepler is removed
In testing a pending patch to actors, I found my changes to an actor didn't appear in the library until .kepler was m... Derik Barseghian
05:03 PM Bug #5457: Mac OS X: Kepler.app should display module error messages in a window
I checked in a fix. Reassigning to Christopher to test. Daniel Crawl
03:44 PM Bug #5587: long parameter values get replaced with scrollbar
I'm reopening since this is occurring again. The steps in comment 2 will demonstrate the problem. I verified again th... Daniel Crawl

08/27/2012

06:18 PM Bug #5692: Values not committed to actors
There seams something to it.

Tested clicking on the Commit button in different ways;
Normal clicks - ie without hor...
Ian Ian
11:50 AM Bug #5692: Values not committed to actors
I'm so glad you were able to track it down and provide us w/ these details. If you find anything else related please ... Derik Barseghian
05:15 PM Bug #5699 (New): Change the workflow scheduler server documentation link in the workflow-scheduler-gui module
Currently the the workflow scheduler server documentation points to the svm trunk version. In the next workflow-sched... Jing Tao

08/26/2012

06:40 PM Bug #5692: Values not committed to actors
[Sorry the the delay, I only work Mon-Wed]
Due to rsi I use a pen and tablet for mouse input, the problem seams to b...
Ian Ian

08/25/2012

02:54 AM Bug #5685: data isn't always chunked properly
(The above was an example of a metadata change that didn't make it through to DT.)
(In reply to comment #4)
Derik Barseghian
02:45 AM Bug #5685: data isn't always chunked properly
Sensor actor appears to be properly setting span metadata:
[run] SpanControl.setMetadataForSensor(Batt_Volt,CR8...
Derik Barseghian
02:17 AM Bug #5685: data isn't always chunked properly
Doesn't look like trolling through the archive will be necessary. The same problem of a datapackage containing two da... Derik Barseghian
12:43 AM Bug #5694: Dragging from a port results in a NPE
Fixed this particular issue in reporting's WorkflowManager at r30536.
(In reply to comment #4)
> There's a new issue...
Derik Barseghian
 

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