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From 02/07/2005 to 03/08/2005

03/08/2005

03:36 PM Bug #1977: need to add parent of namedplace in that table.
done! Just need to run the sql script when we rebuild vegbank. Reminder is
listed in the wiki page for rebuilding v...
Michael Lee

03/07/2005

11:41 PM Bug #2004: broken link on Main Menu of vegbank.org
fixed now. vegbank.org was deployed without the latest struts-config.xml P. Anderson
09:39 PM Bug #2004 (Resolved): broken link on Main Menu of vegbank.org
I got the blue tomcat screen of invalidity:
HTTP Status 400 - Invalid path /DisplayDatasets was requested
type St...
Michael Lee
12:37 PM Bug #2003 (Resolved): put String rowclass in standard jsp declarations
this way don't have to define it in each page and risk doubling it up in an
included page
Michael Lee
09:51 AM Bug #2002 (Resolved): add VegBranch downloads to cache and fix infinite loop problem
Michael Lee

03/05/2005

06:52 PM Bug #1977: need to add parent of namedplace in that table.
new namedplaceCorrelation added on aldo. Need to test that its addition doesn't
pose problems for compile of java be...
Michael Lee

03/02/2005

12:08 PM Bug #1858: XML Loader (13): XML files need to load that have no plots, just other valid root elements
this DOES work. Communities loaded successfully on aldo Michael Lee

02/16/2005

01:46 PM Bug #1863: XML Loader (7): run keywordGen after loading XML
yep - only entities sans keywords are updated right after load now. P. Anderson
01:43 PM Bug #780: Email and show online deposit receipt; (option of long or short format?)
done, but still need finish dataset view so that link works. P. Anderson
01:36 PM Bug #1978: Plant and Community Query Broken
fixed now. P. Anderson

02/11/2005

04:17 PM Bug #1978 (Resolved): Plant and Community Query Broken
They return all results, no matter what criteria you provide them with Michael Lee

02/10/2005

05:22 PM Bug #792: Build validation package:Four-tier +/- US-NVC filter
huh? No one knows what this is. Michael Lee
05:21 PM Bug #875: NRIS Export
see bug 720 Michael Lee
05:21 PM Bug #749: Data loader plugins:LandCare
see bug 720 Michael Lee
05:21 PM Bug #751: Data loader plugins:NRIS :Develop Loader
see bug 720 Michael Lee
05:20 PM Bug #750: Allow users to write plug-ins for third party data formats, export and import
VPRO, Landcare, NRIS Michael Lee
05:19 PM Bug #720: Party Perspective Managment (plant/comm):General interface to allow
allow bulk imports Michael Lee
05:18 PM Bug #720: Party Perspective Managment (plant/comm):General interface to allow
*** Bug 733 has been marked as a duplicate of this bug. *** Michael Lee
05:18 PM Bug #720: Party Perspective Managment (plant/comm):General interface to allow
*** Bug 716 has been marked as a duplicate of this bug. *** Michael Lee
05:14 PM Bug #720: Party Perspective Managment (plant/comm):General interface to allow
*** Bug 719 has been marked as a duplicate of this bug. *** Michael Lee
05:14 PM Bug #720: Party Perspective Managment (plant/comm):General interface to allow
correlate, etc. Michael Lee
05:18 PM Bug #733: Mechanism to add new communities:Bulk input of communities & taxa
fdsafdas
*** This bug has been marked as a duplicate of 720 ***
Michael Lee
05:18 PM Bug #910: Business Rules:Confidentiality of T&E
fdasfdsa Michael Lee
05:18 PM Bug #716: Mechanism to add new plants:Insert business rules
fda
*** This bug has been marked as a duplicate of 720 ***
Michael Lee
05:17 PM Bug #723: Mechanism to add new plants (one plant at a time) - web
part of another Michael Lee
05:17 PM Bug #715: Mechanism to add new communities, one at a time, web interface
part of another Michael Lee
05:14 PM Bug #719: manage plants you own
fds
*** This bug has been marked as a duplicate of 720 ***
Michael Lee
05:12 PM Bug #681: Website cleanup:Spelling and editing checks
do this before grant runs out. One time event. Michael Lee
05:12 PM Bug #676: Check with multiple browsers
do this before grant runs out. One time event. Michael Lee
05:09 PM Bug #810: Methods :Collections of methods:connect and implement form
was for manual entry, no need Michael Lee
05:09 PM Bug #1968: Allow uploading of binary files to VegBank that "relate" to plots, projects, etc.
*** Bug 1227 has been marked as a duplicate of this bug. *** Michael Lee
01:04 PM Bug #1968 (New): Allow uploading of binary files to VegBank that "relate" to plots, projects, etc.
Michael Lee
05:09 PM Bug #1227: form to import graphics
part of larger "all binaries" import
*** This bug has been marked as a duplicate of 1968 ***
Michael Lee
05:08 PM Bug #915: Performance tuning
t Michael Lee
05:05 PM Bug #1414: New field to ID quality of concept?
part of larger taxonomic reworking of our db Michael Lee
05:04 PM Bug #701: Enter 2 years of USDA PLANTS:Possible conversion to ITIS standards
handled elsewhere Michael Lee
05:02 PM Bug #1225: Load USDA/ITIS 2004 plants
2005 not 2004! Michael Lee
05:00 PM Bug #675: Evaluate Tutorial
Mike Lee outsources to others to eval the various pieces Michael Lee
04:57 PM Bug #907: Business Rules:Geographic scope
not worrying Michael Lee
04:52 PM Bug #1956: function to fuzz and unfuzz locations for admin
admin manages the "plotsToFuzz" dataset manually, and pushes the button to fuzz
all. Another small dataset is "plots...
Michael Lee
04:49 PM Bug #1956: function to fuzz and unfuzz locations for admin
need to have revision record with the old CONFIDENTIALITY STATUS. To "unfuzz"
we'd take the realLat/Long and use tha...
Michael Lee
04:45 PM Bug #871: Extend the Project Summary view: add more, allow sort
add geographical range, people who contributed, add sorting (dates), plot counts. Michael Lee
04:40 PM Bug #712: Update the forms for querying plants then communities
they are great now Michael Lee
04:37 PM Bug #815: Add new User-defined variables form
don't need this, use VegBranch Michael Lee
04:37 PM Bug #1954: userDefined: display in entity views
*** Bug 816 has been marked as a duplicate of this bug. *** Michael Lee
04:37 PM Bug #816: View current User-defind variables page
same
*** This bug has been marked as a duplicate of 1954 ***
Michael Lee
04:36 PM Bug #1953: notes: link to view/add note in views
*** Bug 822 has been marked as a duplicate of this bug. *** Michael Lee
04:36 PM Bug #822: Annotation: view current notes on data + create notes
same as the other one
*** This bug has been marked as a duplicate of 1953 ***
Michael Lee
04:35 PM Bug #1955: view my plots -- deposits, based on ownership + embargo chng
*** Bug 835 has been marked as a duplicate of this bug. *** Michael Lee
04:35 PM Bug #835: IP: form for embargo renewal and dropping
included om 1955
*** This bug has been marked as a duplicate of 1955 ***
Michael Lee
03:52 PM Bug #835: IP: form for embargo renewal and dropping
Use a table with all embargoed plots (or all datasets of embargoed (or
submitted) plots), expiration date, change emb...
P. Anderson
04:32 PM Bug #1974: Implement VegBank International Party Perspective
load USDA2005, then correlate to USDA 2000, and correlate to any FNA, other
stuff. Bob provides data package. May n...
Michael Lee
02:11 PM Bug #1974: Implement VegBank International Party Perspective
how to do this, when to do this? Michael Lee
02:11 PM Bug #1974 (New): Implement VegBank International Party Perspective
Michael Lee
04:26 PM Bug #1967: Fix downloader if takes too long: create file and set to download from private space later
cache the download packages (by plot) and stack them together for the downloads Michael Lee
01:03 PM Bug #1967 (New): Fix downloader if takes too long: create file and set to download from private space later
Michael Lee
04:17 PM Bug #1973: Create "add to dataset" link and checkbox for query result views
*** Bug 1949 has been marked as a duplicate of this bug. *** Michael Lee
02:07 PM Bug #1973 (Resolved): Create "add to dataset" link and checkbox for query result views
and some other places too? Needs to be easy to do the following:
1) add all results of my query to dataset
2) ad...
Michael Lee
04:17 PM Bug #1949: "add plot to shopping cart" link on all plot views.
1973 is more coprehensive, add more than just plots to dataset, like comms and
plants
*** This bug has been marked a...
Michael Lee
04:16 PM Bug #1971: Rename Metasearch "general search" and explain how it works on screens
quotes around compound terms would be nice too. Michael Lee
01:47 PM Bug #1971 (Resolved): Rename Metasearch "general search" and explain how it works on screens
Fewer keywords per plot (maybe)?? Need to be able to update keywords for a
particular plot, say after someone annota...
Michael Lee
04:10 PM Bug #1943: need to put "VB" in accessionCode into a props file
Utility.getAccessionPrefix() reads from vegbank.accession.prefix in
vegbank.properties now
P. Anderson
04:08 PM Bug #1962: Store available taxonInterpretation "options" in denorm fields in TaxonObs and allow those names to be shown in views
similar to bug 1352 Michael Lee
01:01 PM Bug #1962 (Resolved): Store available taxonInterpretation "options" in denorm fields in TaxonObs and allow those names to be shown in views
Michael Lee
04:08 PM Bug #1945: accession codes can't have underbars or non-alphanumeric items
regex is now [a-zA-Z0-9] P. Anderson
04:03 PM Bug #1352: choose which comms from commInterpretation - higher level obs summary
add denorm fields to taxonObs indicating those with multiple taxonInts. Perhaps
same thing for observations with mul...
Michael Lee
04:00 PM Bug #1942: Implement ongoing automatic updates with NatureServe
if not completely automated, a few button pushes by dba would be acceptable. Michael Lee
03:52 PM Bug #804: Interpret community in extant plot
needs to have a link to the query and "Browse" for community pages, if available Michael Lee
03:33 PM Bug #1961: Feb2005 Main Menu /Homepage / Header/Footer Redesign - 16 hours MAX
foci should be plots: find, load Michael Lee
01:00 PM Bug #1961 (Resolved): Feb2005 Main Menu /Homepage / Header/Footer Redesign - 16 hours MAX
Michael Lee
03:31 PM Bug #1960: Craft Renewal Request, Due July 15, 2005 wiki:MeetingSBAFeb2005Agenda.Day2
not tracked here Michael Lee
12:59 PM Bug #1960 (Resolved): Craft Renewal Request, Due July 15, 2005 wiki:MeetingSBAFeb2005Agenda.Day2
Michael Lee
03:31 PM Bug #1959: Craft Supplement Request, Due Feb/Mar wiki:MeetingSBAFeb2005Agenda.Day2
not tracked via Bugs, but on someone's calendar Michael Lee
12:59 PM Bug #1959 (Resolved): Craft Supplement Request, Due Feb/Mar wiki:MeetingSBAFeb2005Agenda.Day2
Michael Lee
03:30 PM Bug #1958: Replace USDA 2002 with USDA 2000
if name in USDA2002 and 2000, then update reference to 2000. For those not
found, then we deal with those minimal it...
Michael Lee
12:57 PM Bug #1958 (New): Replace USDA 2002 with USDA 2000
Michael Lee
03:16 PM Bug #1977: need to add parent of namedplace in that table.
also add some more denormalized fields to plot. Need to backfill states and
countries where possible from other plac...
Michael Lee
03:04 PM Bug #1977 (Resolved): need to add parent of namedplace in that table.
and then be able to fill in parents for places. Probably add a new field for
"completely" within the parent, as qua...
Michael Lee
02:52 PM Bug #1957: createIndices.sql should drop sequence before creating
done in cvs, tested on aldo Michael Lee
10:03 AM Bug #1957 (Resolved): createIndices.sql should drop sequence before creating
So just add drop sequence to it. P. Anderson
02:19 PM Bug #1976 (Resolved): 3-in-1 not intuative, redesign, split into column, etc.
see
http://vegbank.org/wiki/Wiki.jsp?page=MeetingSBAFeb2005Agenda.Day1
Michael Lee
02:15 PM Bug #1975: Iteratively query to narrow or broaden query results
to broaden, add more items to an extant dataset
to narrow, query with a dataset's items
Michael Lee
02:14 PM Bug #1975 (New): Iteratively query to narrow or broaden query results
Use datasets ... Michael Lee
01:53 PM Bug #1972 (New): Keep track of downloads for "my account"
maybe? Michael Lee
01:50 PM Bug #1653: Plot Downloads incomplete for a lot of plots: ASCII
perhaps 2 files: one file with overall taxa cover, one with cover by stratum.
if there are no strata, provide empty ...
Michael Lee
01:48 PM Bug #1653: Plot Downloads incomplete for a lot of plots: ASCII
what about plots with no strata-- need rules to overcome this. Perhaps prefs?
This is not a small request.
Michael Lee
01:38 PM Bug #1970 (Resolved): Query to search for plots with plants/comms "in a dataset"
Michael Lee
01:37 PM Bug #1969 (New): Plant/Comm Detail View: add link to "search for plant & children"
This will be placed in Party Perspective box to solve dillema of "whose children?" Michael Lee
01:18 PM Bug #1925: Simple Intellectual Property system: plot query (change SQL)
if we change the SQL on the plot query, then download can't be accessed except
through it, and thus all-or-nothing IP...
Michael Lee
01:03 PM Bug #1966 (Resolved): Fix downloader: only download all data for ASCII, not one file only
Michael Lee
01:02 PM Bug #1965 (Resolved): Create "Browse" screens to browse various data, primarily plots, via different starting points, wiki:MeetingSBAFeb2005Agenda.Day3
Michael Lee
01:02 PM Bug #1964 (New): Business rules for allow plots in: minimums and how to enforce?
Michael Lee
01:01 PM Bug #1963 (New): Customize name displayed for a plant concept
Michael Lee

02/09/2005

04:35 PM Bug #738: TurboVeg plot import (TV-XML to VB-XML by our stylesheet)
perhaps via VegBranch Michael Lee
04:25 PM Bug #1956: function to fuzz and unfuzz locations for admin
Enter accession code, choose fuzz value, submit. P. Anderson
04:21 PM Bug #1956 (New): function to fuzz and unfuzz locations for admin
Michael Lee
04:20 PM Bug #1955: view my plots -- deposits, based on ownership + embargo chng
admin needs to be able to do this for anyone Michael Lee
04:19 PM Bug #1955 (New): view my plots -- deposits, based on ownership + embargo chng
allow user to update any embargoes to:
No embargo (drop embargo)
1 month
3 months
6 months
9 mo.
1 yr
2 yr
...
Michael Lee
04:01 PM Bug #820: Revisions: edit plots, cite them at a time, view them as they were before revisions
Create edit modes for all views that represent children of observation. Editing
functions are enabled if user is own...
P. Anderson
03:50 PM Bug #1954 (Resolved): userDefined: display in entity views
Perhaps create database views to simplify retrieval and display of userDefined
values for tables:
*plot
*observa...
P. Anderson
03:47 PM Bug #1953 (Resolved): notes: link to view/add note in views
Allow certified users to add notes. Allow notes to be publicly viewable.
Supported tables:
*observation
*plot
...
P. Anderson
03:44 PM Bug #1952 (Resolved): Load userdefined during XML load
Add userdefined entity data during the load. P. Anderson
03:00 PM Bug #1950: Need a "cite this plot" link on observation views
http://vegbank.org/view/VB.Ob.123.ZION45.2004-12-31T14:21:03
instead of cite
Michael Lee
02:48 PM Bug #1950 (Resolved): Need a "cite this plot" link on observation views
Need link that gives you a URL to use as a citation of VegBank.
http://vegbank.org/cite/VB.Ob.123.ZION45.2004-12-3...
Michael Lee
02:49 PM Bug #1951 (Resolved): Need to handle citation URLs
Link to appropriate view of entity when passed a citation request: Michael Lee
02:44 PM Bug #1949 (Resolved): "add plot to shopping cart" link on all plot views.
Michael Lee
02:43 PM Bug #1352: choose which comms from commInterpretation - higher level obs summary
do need by aug 2005. Several limtited options: current, original, best
fit/confidence, see VegBranch export to NPS-P...
Michael Lee
02:41 PM Bug #874: TurboVeg export
maybe 3-5 text files that could be imported into TurboVeg. Environment, Species
Occurrence, CoverClassSystem Info, e...
Michael Lee
11:28 AM Bug #1947 (Resolved): fix plot query results to paginate results
Michael Lee

02/07/2005

03:44 PM Bug #1946 (Resolved): try to use "commTypeID" for Z_USER_I
use a query to imitate the real table. Check thoroughly and update Z_FieldDesc Michael Lee
11:31 AM Bug #1945 (Resolved): accession codes can't have underbars or non-alphanumeric items
We could live with underbars, but should test other non-alphanumeric Michael Lee
 

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