Kepler

05/04/2006

09:44 AM Bug #2433 (Resolved): Change Actor Library folder icons to ontology symbols

Change Actor Library folder icons to ontology symbols Matthew Brooke

05/02/2006

01:11 PM Bug #2432 (Resolved): problems saving kars from saved actors

When saved RExperession actors or saved Composites are opened, they cannot be saved to the local KAR library. The key... Dan Higgins

04/29/2006

01:28 PM Bug #2425: Actor documentation retains information for deleted ports

Thanks for the clarification. The bug appeared in both Ptolemy and Kepler systems and Edward has checked in the fixes... Nandita Mangal

04/28/2006

02:21 PM Bug #2386: Customize Documentation in Kepler removes all base documentation

The documentation for ports and parameters and other unchanged information should appear now in the DocViewer upon cu... Nandita Mangal

11:56 AM Bug #2425: Actor documentation retains information for deleted ports

No, Josh was adding port from the canvas (specialized version of the R actor). He added custom documentation, then de... Dan Higgins

11:42 AM Bug #2425: Actor documentation retains information for deleted ports

(In reply to comment #0)
> if you create a new (R) actor port and then delete it, the documentation form
> still reta... Nandita Mangal

04/27/2006

06:15 PM Bug #2143: fix functionality and GUI issues with query builder

The aboved tasks were done.
I added more stuff:
1. Okay and Cancel buttons
2. New right click menu to delete existed ... Jing Tao

05:18 PM Bug #2429 (Resolved): link between Digir actor and downstrem ator disconnected when outtype is "as field"

When user trys to open a workflow which contains a digir actor and the output type of this actor is "as field", user ... Jing Tao

04:16 PM Bug #2384: Documentation display problems in Kepler

This 'bug' is fixed by correctly defining parameters so that constructor uses the same text as variable name and usin... Dan Higgins

04:13 PM Bug #2348: Rewrite disk based GIS code for speed increase

I am moving this to post 1.0 since it is not essential and we have too many other things to do. Dan Higgins

04:04 PM Bug #2427: EML2 Data Source problems with local metadata/data

Now I added code to get the EML file location from parameter. And it works for me in both windows and linux machine.
... Jing Tao

02:23 PM Bug #2014: Disallow editing of the schema for data

Set schema and sql parameter visibility to EXPERT. No it is hidden by common user. Jing Tao

10:19 AM Bug #2419: turn Digir source 'off' as default data source

In lib/config.xml file, new elements - selected are added to both service and document type. Kepler can read this set... Jing Tao

10:15 AM Bug #2372: Digir datasource data retreival 'by field' does not work

In digir actor implementation class, somehow the data type of attributes didn't work. This is the reason why if "by f... Jing Tao

04/26/2006

04:44 PM Bug #2427: EML2 Data Source problems with local metadata/data

It is a thread issue. So how an Entity object not be assinged value (keep null) before it was called. The fixed was c... Jing Tao

02:59 PM Bug #2427: EML2 Data Source problems with local metadata/data

I tried a brand new cvs checkout of kepler and ptolemy in windows, it work fine to me! Jing Tao

01:13 PM Bug #2427: EML2 Data Source problems with local metadata/data

I can open the workflow OK on Windows using last nights zip, but I CANNOT with a brand new checkout of Kepler CVS (on... Dan Higgins

12:13 PM Bug #2427: EML2 Data Source problems with local metadata/data

I tried the workflow which dan use local eml file. After deleting cache, I can still open it and run it without any p... Jing Tao

11:34 AM Bug #2427: EML2 Data Source problems with local metadata/data

I created a workflow with an eml datasource using a local EML file. It worked. Closing Kepler and reopening works UNT... Dan Higgins

02:03 PM Bug #2421: Port Name bug in SummaryStatistics actor

I had missed two spots where a port was created and the name was not changed. this is now fixed. Chad Berkley

01:44 PM Bug #1895: remote actor repository

The remote repository is now working with web services. The new permanent url is library.kepler-project.org. Curren... Chad Berkley

01:42 PM Bug #2412: Unable to Create Kar file from composite

The reason you cannot create a kar file from an instantiated composite is that the changes to the moml are not saved ... Chad Berkley

04/25/2006

07:03 PM Bug #2321: merge exp files into ptolemy CVS

I removed Director and ComponentEntity.
I'm working on VergilApplication. Christopher Brooks

11:16 AM Bug #2427 (Resolved): EML2 Data Source problems with local metadata/data

There are several problems with using the EML DataSource actor with local EML metadata and associated data files.
... Dan Higgins

10:22 AM Bug #2426 (Resolved): Search for 'image' in actor tree 'hangs' window in nightly build

A search for 'image' in the actor tab 'hangs' the window when one is using the nightly zipped version; message is
Un... Dan Higgins

04/24/2006

02:57 PM Bug #2425 (Resolved): Actor documentation retains information for deleted ports

if you create a new (R) actor port and then delete it, the documentation form still retains a place for the deleted p... Josh Madin

04/21/2006

05:43 PM Bug #2420: Need a 25x25 kepler icon to decorate title bars

I'm closing this because we have the icon and it shows up in the
different windows. Christopher Brooks

04/20/2006

05:07 PM Bug #2420: Need a 25x25 kepler icon to decorate title bars

Created a new small 25 x 25 icon for title bar as a stop-gap. Laura and I originally talked about using a solid teal ... Matthew Brooke

02:36 PM Bug #2413: ICONS: Monitor Value icon should show value

fixed - added this to moml file in kepelr/actors/MonitorValue/MonitorValue.xml:
<property name="displayWidth" class=... Matthew Brooke

12:28 PM Bug #2324: SVG - old-style icon still displayed for certain actors

OK - set icons by LSID (in uiSVGIconMappingsByLSID.properties) for:
BasicUnits, CGSUnitBase, ElectronicUnitBase, SI (... Matthew Brooke

04/19/2006

10:29 AM Bug #2343: add welcome screen for release 1.0

I'm changing the target milestone to 1.0.0. Christopher Brooks

09:57 AM Bug #2343: add welcome screen for release 1.0

oops sorry, meant the welcome screen not the splash screen as I referenced in the last note. Laura Downey

09:55 AM Bug #2343: add welcome screen for release 1.0

Just looked at splash screen and it is very very close. Just 2 items remain to be adjust so that it matches the spec... Laura Downey

04/18/2006

03:46 PM Bug #2324: SVG - old-style icon still displayed for certain actors

The remaining actors without new icons are as follows:
BasicUnits (ptolemy.data.unit.UnitSystem)
CGSUnitBas... Matthew Brooke

03:37 PM Bug #2324: SVG - old-style icon still displayed for certain actors

Fixed some typos in uiSVGMappingsByClass props file, and removed some references to BoxedValueIcon in actor moml.
O... Matthew Brooke

11:09 AM Bug #2421: Port Name bug in SummaryStatistics actor

I suspect that the problem occurs for all derived actors. This would mean the any actors built on RExpression would n... Dan Higgins

11:07 AM Bug #2421 (Resolved): Port Name bug in SummaryStatistics actor

Dan Higgins wrote:
> Hey Chad,
>
> If I simply drag the SummaryStatistics actor (a specialized version of the R... Dan Higgins

04/17/2006

08:02 PM Bug #2321: merge exp files into ptolemy CVS

I'll take this bug.
I was able to move a few files, see below.
I can also probably move the DBConnectionToken out.
A... Christopher Brooks

07:58 PM Bug #2420 (Resolved): Need a 25x25 kepler icon to decorate title bars

Hi Laura,
I'm assigning this bug to you because you will either know how to fix it
or know who to assign this one t... Christopher Brooks

05:05 PM Bug #2324: SVG - old-style icon still displayed for certain actors

added a line to build-ptolemy.xml, to exclude files of the form *Icon.xml, since these interfere with new SVG icons.... Matthew Brooke

04:15 PM Bug #2056: Port labels appear 'twice' when DataSource actor added

ote - also happens on workflows without EML datasources Matthew Brooke

04:14 PM Bug #2056: Port labels appear 'twice' when DataSource actor added

moved to 1.0, per conf call 17Apr06 Matthew Brooke

10:55 AM Bug #2242: move metacat ecogrid service to new host

Done. Both the KNB metacat and the EcoGrid interfaces now live on knb.msi.ucsb.edu. FIXED. Matt Jones

10:54 AM Bug #2171: Add support for missingValueCode in EML parser

Christopher added NIL Token in ptolemy and our mssingValue can be expressed as NIL Token. So this bug fixed. Jing Tao

04/16/2006

07:45 PM Bug #2419 (Resolved): turn Digir source 'off' as default data source

Digir source has not been working and this results in 'hung' data searches. Even when working, Digir greatly increase... Dan Higgins

07:30 PM Bug #2273: Problem with Hydro1K Flow Accumulation data

Fixing this would require changes in the gdal code. Also, the Accumulation data is apparently not considered vital. T... Dan Higgins

07:20 PM Bug #2415: Create KAR from Actor bug (on Mac)

Corrected this problem by changing the OpenFileDialog to a SaveFileDialog Dan Higgins

04/14/2006

08:50 AM Bug #2382: Documentation kar does not appear in actor tree

Matthew,
I would say 'no' although the two are similar. The Documentation actor provides a direct link to a html f... Dan Higgins

04/13/2006

04:26 PM Bug #2417 (Resolved): TRACKING: DOCUMENTATION - complete first draft of documentation

complete first draft of documentation
Includes:
Actor Man Pages
Getting started guide (incl. tutorial chapters)
... Matthew Brooke

04:15 PM Bug #2382: Documentation kar does not appear in actor tree

Dan -
Has this Documentation actor been superseded by Edward's DocViewer? If so, let's close this bug
Thanks Matthew Brooke

04:04 PM Bug #2416 (In Progress): ICONS: Tracking bug - Rearranging and regenerating icons

Tracking bug - Rearranging and regenerating icons, per MB, MBJ and LLD conf calls
See Kepler Workflows with annot... Matthew Brooke

03:58 PM Bug #2034: provide visual indication of default button/choice on windows/dialogs

too general. will address in each dialog box, and any bugs can then be targeted specifically at occurrences Matthew Brooke

03:56 PM Bug #2035: use checkboxes and radio buttons correctly

has largely been addressed in current ptolemy dialogs, but will be addressed specifically in new dialogs thru' new, s... Matthew Brooke

03:44 PM Bug #2415 (Resolved): Create KAR from Actor bug (on Mac)

On the Mac, if one uses the 'Create KAR from Actor' menu on a modified RExpression actor, the Browse button for setti... Dan Higgins

03:04 PM Bug #2349: Actors should have preconditions to test for long runs

This enhancement is "Actors should have preconditions to test for long runs."
It is a nice idea, but low priority and... Christopher Brooks

03:01 PM Bug #2318: Copyrights and licenses of subpackages need to be handled

I'm assigning this to Dan because he is the release master.
I'm not sure if there is time to do this or not, it is Da... Christopher Brooks

02:44 PM Bug #2343: add welcome screen for release 1.0

I'm closing this bug, which is "add welcome screen for release 1.0"
There is a related bug,
"Opening a preexisting m... Christopher Brooks

02:42 PM Bug #2414 (New): Opening a preexisting model should open in a blank viewer

In "add welcome screen for release 1.0" at
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=2343
Matthew wrote:... Christopher Brooks

02:24 PM Bug #2246: TOOLBAR: status on opening workflows and blank frames

I took another look at this bug. In many ways, we could probably
close this, it falls under the newer bug
"enable/di... Christopher Brooks

02:01 PM Bug #2413 (Resolved): ICONS: Monitor Value icon should show value

Monitor Value icon should show value instead of svg icon Matthew Brooke

12:06 PM Bug #2352: Preferences System needs to be resolved

I'm closing this bug because
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=2343
"add welcome screen for release ... Christopher Brooks

12:03 PM Bug #2240: add support for null values to data passing among ports

I'm marking this bug as fixed, because I think the work here is done.
If there are problems, it can be reopened.
One... Christopher Brooks

11:54 AM Bug #2407: Kepler process keeps running after close all windows

Fixed by updating ptii/ptolemy/actor/lib/WelcomeWindow:
show(): Call super.close() because _close() expects that the ... Christopher Brooks

04/12/2006

03:18 PM Bug #2324: SVG - old-style icon still displayed for certain actors

note to self (or whoever has to change these "*Constant" icons in future...)
Actual icon is ptolemy.vergil.icon.Boxe... Matthew Brooke

02:42 PM Bug #2324: SVG - old-style icon still displayed for certain actors

changed icon assignments for:
Permanent String Constant (src/org/resurgence/actor/PermanentStringConstant.java)
and... Matthew Brooke

02:34 PM Bug #2407: Kepler process keeps running after close all windows

I'll handle this one.
The problem is that we have a tableau associated with welcome window.
It will be a little while... Christopher Brooks

01:12 PM Bug #2407: Kepler process keeps running after close all windows

HINT: in Kepler, you can get the WelcomeWindow to show up again by deleting the file .ptolemyII in your 'home' direco... Dan Higgins

01:48 PM Bug #2412 (Resolved): Unable to Create Kar file from composite

A number of problem occur when trying to create a kar file from an existing composite actor in a workflow.
1) If y... Dan Higgins

04/11/2006

03:02 PM Bug #2389: Actor seach problem

made the _hideName attribute self-closing tag. previously, it surrounded the icon description, which i think was an e... Matthew Brooke

02:43 PM Bug #2355: TOOLBAR: icon states don't display correctly for first four toolbar buttons

done Matthew Brooke

02:02 PM Bug #2409: Display Name Not Showing for org.sdm.spa.Pause and org.sdm.spa.Stop

may be intermittent - subsequently was able to get "Stop" to show up, even though it had failed previously - but stil... Matthew Brooke

10:18 AM Bug #2409 (Resolved): Display Name Not Showing for org.sdm.spa.Pause and org.sdm.spa.Stop

org.sdm.spa.Pause and org.sdm.spa.Stop
When dragged to canvas, name ("Pause" or "Stop") does not show up. Right cl... Matthew Brooke

01:21 PM Bug #2410 (New): need feature in UI for users to assign icon to an actor

If a user creates an R actor, there is currently no method for them to assign an icon to the R actor from the user in... Laura Downey

04/10/2006

04:51 PM Bug #2323: Remove text added with "Attribute" actor from older workflows

Spoke with Matt Jones on 10Apr06 - basically, any new text annotations created in Kepler will use the Annotation Acto... Matthew Brooke

02:19 PM Bug #2408 (Resolved): Need composite actor instance in actor tree

Currently, when you drag a 'CompositeActor' from the actor tree to the work area, you get a 'CompositeActor' CLASS ac... Dan Higgins

04/07/2006

04:06 PM Bug #2324: SVG - old-style icon still displayed for certain actors

ah! - the DocViewer was in there, but it had no text label (as Dan had previously pointed out in an email), and its t... Matthew Brooke

11:21 AM Bug #2324: SVG - old-style icon still displayed for certain actors

DocViewer seems to be missing from your list. It only displays a rectangle. It should have text saying something like... Dan Higgins

10:59 AM Bug #2324: SVG - old-style icon still displayed for certain actors

looked thru the 3 workflows created by Matt, which show all the current actors. According to these WFs, the following... Matthew Brooke

02:58 PM Bug #2407 (Resolved): Kepler process keeps running after close all windows

If you turn off welcome screen, then run kepler again. You will find kepler process keeps running after close all win... Jing Tao

02:57 PM Bug #2382: Documentation kar does not appear in actor tree

This issue, reported by Zhijie, is now being tracked by Bug #2389. This bug should be used for tracking the original ... Matthew Brooke

02:54 PM Bug #2389: Actor seach problem

This seems to be caused by DocViewer Parameter.
It appears in the tree with a "+" next to it, as if it is a folder ... Matthew Brooke

01:53 PM Bug #2399: problems with GARP_SingleSpecies_BestRuleSet.xml

Revised the RScript so that a nil ruleset is not sent to the GARP actor. This fix added some parameter checks to the ... Dan Higgins

04/06/2006

06:23 PM Bug #2400: Need ability to set parameter ranges and relationships.

This would be cool. It would be nice if there were parameters that
had a limited range. The range could be an attri... Christopher Brooks

01:47 PM Bug #2400 (New): Need ability to set parameter ranges and relationships.

We might consider a new Parameter actor that would allow the user to specify ranges of values to be allowed and even ... Dan Higgins

05:52 PM Bug #1844: tool tip problems

Now looks like it's fixed - checked in to ptolemy tree (ptII/ptolemy/vergil/basic/EditorDropTarget.java). Tested on w... Matthew Brooke

01:42 PM Bug #2399 (Resolved): problems with GARP_SingleSpecies_BestRuleSet.xml

The workflow "GARP_SingleSpecies_BestRuleSet.xml" (#19 in the GARP example list) will crash if the numIterations para... Dan Higgins