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From 05/06/2010 to 06/04/2010

06/04/2010

03:49 PM Bug #4741: create icons for engineering view components
also need a different color/icon to represent sending commands to SPAN Daniel Crawl
03:45 PM Bug #5040: create views, tabs, configuration
done Daniel Crawl

06/03/2010

06:22 PM Bug #5040: create views, tabs, configuration
I've created stub tabs and the configuration.xml.
Yet to do:
set the canvas name to be "Site Layout" instead of "Wo...
Daniel Crawl
01:14 PM Bug #5040 (Resolved): create views, tabs, configuration
The view and tab panes for the engineering view need to be created (for now, they can be empty), along with a configu... Daniel Crawl
01:20 PM Bug #4754: update metacat workflow execution scheduler
Hi Jing,
This sounds great. Do you want to create a new kepler module for the client jar and scheduler gui (bug 4753...
Daniel Crawl

06/02/2010

01:12 PM Bug #4997: SEEK/garpModel_ImageJ.xml has an exception while opening
I am moving this workflow and all similar workflows that do not work into an unsupported directory. It will be up to ... David Welker
01:11 PM Bug #5031: Fail to switch to other suite from module manager of Kepler-2.0-RC3
We will look more at this bug after release candidate 4. David Welker
01:10 PM Bug #5034: Need to generalize copying workflow demos from areas other than outreach.
Closing this bug. We may need to re-open this bug or a new bug in order to deal with the change in location of docume... David Welker
12:05 PM Bug #4754: update metacat workflow execution scheduler
The workflow execution scheduler was separated from metacat. Now it stays at https://code.ecoinformatics.org/code/wfs... Jing Tao
11:00 AM Bug #5016: mirror dataturbine via command line
I've created a program to do this: util.MirrorDT. Daniel Crawl

06/01/2010

02:11 PM Bug #4762: create gui to control sensor from kepler
For now, use the existing actor configuration dialog to control components.
If this is not sufficient, we can design...
Daniel Crawl
02:10 PM Bug #4743: create gui to edit documentation metadata for component
For now, use the existing actor configuration dialog to edit or add metadata for components.
If this is not sufficie...
Daniel Crawl
01:10 PM Bug #5034: Need to generalize copying workflow demos from areas other than outreach.
Typo in Comment#4, the new properties are not <modulename>.demodir, but <modulename>.workflowdir.
I've updated all t...
Derik Barseghian
10:48 AM Bug #5034: Need to generalize copying workflow demos from areas other than outreach.
(In reply to comment #5)
> Changing the "documentation" folder to "docs." Also, putting it at the top
> level of a mo...
Derik Barseghian
11:18 AM Bug #4983: cannot run kepler.sh in RC2
Thanks for taking a look at this.
One issue is that by changing directories to the script directory,
starting java an...
Christopher Brooks
11:08 AM Bug #4983: cannot run kepler.sh in RC2
Okay, patched in branch as well. Sean Riddle
11:05 AM Bug #4983: cannot run kepler.sh in RC2
Yes, build instructions point to: https://code.kepler-project.org/code/kepler/releases/release-branches/build-area-2.0/ Derik Barseghian
10:59 AM Bug #4983: cannot run kepler.sh in RC2
Fixed in r24623 in trunk build-area (script works from any directory on a Mac). Is there a separate 2.0 build-area th... Sean Riddle

05/30/2010

01:15 AM Bug #5034: Need to generalize copying workflow demos from areas other than outreach.
Changing the "documentation" folder to "docs." Also, putting it at the top level of a module, rather than within the ... David Welker

05/28/2010

08:51 PM Bug #5034: Need to generalize copying workflow demos from areas other than outreach.
This is mostly done now in trunk and 2.0.
After futher discussion w/ David and Sean, we decided to change to copy al...
Derik Barseghian
03:39 PM Bug #5034: Need to generalize copying workflow demos from areas other than outreach.
Not mentioned in the bug but the idea was to copy all modules' module/resources/demos dirs. But we've changed the pla... Derik Barseghian
02:40 PM Bug #5034: Need to generalize copying workflow demos from areas other than outreach.
Oh, I nearly forgot. We need a docs directory to.
(3) For each module in the current set:
-- Check if there is a doc...
David Welker
01:28 PM Bug #5034: Need to generalize copying workflow demos from areas other than outreach.
Proposed solution:
(1) For each module in the current set:
-- Check if there is a demo directory. (This should be de...
David Welker
03:22 PM Bug #5028: dataturbine overwrites recent data when frequently detaching
This has been fixed in DT V3.2B4. Daniel Crawl
12:17 PM Bug #4983: cannot run kepler.sh in RC2
I have a script that works for kepler.sh. I haven't integrated it into the startup-script target yet, though. It's at... Sean Riddle
11:30 AM Bug #5036 (New): All workflows that do not work should be moved.
I am moving all workflows that do not work to an unsupported directory so that people are not surprised when they try... David Welker
10:54 AM Bug #5026: Error dialog pop up in RC3 when closing the ImageJ window after workflow execution.
Fixed. David Welker
08:35 AM Bug #5022: 2.0-RC3 Windows installer creates Kepler 2.0-RC2 start menu choice, not Kepler 2.0-RC3
Fixed. The icon is now showing up properly David Welker

05/27/2010

09:39 PM Bug #5034 (Resolved): Need to generalize copying workflow demos from areas other than outreach.
Lei Dou at UC Davis is working on a module that extends Kepler functionality. It, like many other modules, has workfl... David Welker
09:31 PM Bug #5031: Fail to switch to other suite from module manager of Kepler-2.0-RC3
This is an important bug that should block the release. David Welker
11:40 AM Bug #5031 (Resolved): Fail to switch to other suite from module manager of Kepler-2.0-RC3
In the newly installed Kepler-2.0-RC3 on windows vista, I want to switch to comad-exp-1.0.0 suite from the default ke... Lei Dou
02:14 PM Bug #5030: RExpression2 actor will fail if the libs are not found
I've tried to run/install JRI on a 64 bit windows machine.
The JRI examples that they ship seem to work and I can get...
ben leinfelder
12:54 PM Bug #4755: update workflow run manager and reporting to display runs of sensor workflows
Two subtasks of this bug are:
1) WRM must be able to dynamically connect to and show runs in remote provenance stores...
Derik Barseghian
12:50 PM Bug #5033 (Resolved): Workflow Run Manager - Allow multiple instances of WRM in one Kepler instance
As Figure 6 implies, each Kepler window has a WRM that may be showing run results on a different server:
https://kep...
Derik Barseghian
12:46 PM Bug #5032 (Resolved): Workflow Run Manager - ability to connect to different prov stores from gui actions
WRM must be able to dynamically connect to and show runs in remote provenance stores based on what a user has clicked... Derik Barseghian

05/26/2010

03:08 PM Bug #4985: problem with workflows using Rexpression on Windows XP
i'll try to make 64 bit libs for JRI ben leinfelder
02:16 PM Bug #4985: problem with workflows using Rexpression on Windows XP
Fixed the 2 workflows, and tested on 2.0 and trunk on mac, and 2.0 on XP, and they work. I'm going to move the concer... Derik Barseghian
02:12 PM Bug #4985: problem with workflows using Rexpression on Windows XP
(In reply to comment #5)
> (In reply to comment #1)
>
> 2. The RExpression2 (JRI-based) actor will fail if the libs ...
jianwu jianwu
01:51 PM Bug #4985: problem with workflows using Rexpression on Windows XP
(In reply to comment #1)
1. Derik will change the workflows to point to the DEMODIR path.
2. The RExpression2 (JRI-...
ben leinfelder
02:41 PM Bug #5025: Couldn't run the workflows 00-StatisticalSummary and 08-CommandLine_2
(In reply to comment #10)
> (In reply to comment #9)
> > (In reply to comment #8)
> > > (In reply to comment #7)
> > ...
Derik Barseghian
12:39 PM Bug #5025: Couldn't run the workflows 00-StatisticalSummary and 08-CommandLine_2
I agree that we should close this bug. I am gong to do so, but if anyone has any objections, feel free to re-open it.... David Welker
02:20 PM Bug #5030 (New): RExpression2 actor will fail if the libs are not found
Creating a new bug from discussion originating in bug#4985, relevant sections posted below:
Jianwu said:
I also t...
Derik Barseghian
01:35 PM Bug #4972: Write documentation for workflow-run-manager module
done Derik Barseghian
01:34 PM Bug #5014: Add documentation to resources for the Workflow Run Manager module
done Derik Barseghian

05/25/2010

06:55 PM Bug #5025: Couldn't run the workflows 00-StatisticalSummary and 08-CommandLine_2
(In reply to comment #9)
> (In reply to comment #8)
> > (In reply to comment #7)
> > > Error message about R not bein...
Derik Barseghian
05:52 PM Bug #5025: Couldn't run the workflows 00-StatisticalSummary and 08-CommandLine_2
(In reply to comment #8)
> (In reply to comment #7)
> > Error message about R not being on path should properly show ...
Derik Barseghian
04:27 PM Bug #5025: Couldn't run the workflows 00-StatisticalSummary and 08-CommandLine_2
(In reply to comment #7)
> Error message about R not being on path should properly show now on trunk at
> r24573 and ...
Derik Barseghian
04:23 PM Bug #5025: Couldn't run the workflows 00-StatisticalSummary and 08-CommandLine_2
Error message about R not being on path should properly show now on trunk at r24573 and 2.0 at r24576. Leaving open f... Derik Barseghian
12:01 PM Bug #5025: Couldn't run the workflows 00-StatisticalSummary and 08-CommandLine_2
After adding R to my PATH these workflows work for me as well. I'm going to take a look at the RExpression actor to s... Derik Barseghian
10:38 AM Bug #5025: Couldn't run the workflows 00-StatisticalSummary and 08-CommandLine_2
After adding R into the path, those two workflows work.
So we have to make sure R was added into the path on my wind...
Jing Tao
10:27 AM Bug #5025: Couldn't run the workflows 00-StatisticalSummary and 08-CommandLine_2
It seems that R is not in the path.
C:\Users\tao>R --no-save
'R' is not recognized as an internal or external comman...
Jing Tao
04:25 PM Bug #4985: problem with workflows using Rexpression on Windows XP
Infinite loop problem is fixed and error message about R not being on path should properly show now on trunk at r2457... Derik Barseghian
02:26 PM Bug #5022: 2.0-RC3 Windows installer creates Kepler 2.0-RC2 start menu choice, not Kepler 2.0-RC3
I am re-opening this bug. Testing reveals that this is not fixed yet. David Welker
12:50 PM Bug #5013: Add documentation to resources for Tagging module
Done. Sean Riddle
12:49 PM Bug #4971: Write documentation for tagging module
Wrote documentation and committed a PDF to trunk and branch and a Word docx to kepler-docs. Sean Riddle
11:52 AM Bug #4869: changes made to workflows during dialogs before committing (Edit Parameters/Cancel)
Sean Riddle posted bug 5029, which is a duplicate of this bug, so I closed 5029
Below is post:
> 1) Double-click on ...
Christopher Brooks
11:50 AM Bug #5029: Parameter changes can be committed without clicking the commit button
This is a duplicate of 4869. Fixing this before Kepler-2.0 is not
advised as the problem involves modal dialogs. A ...
Christopher Brooks
11:25 AM Bug #5029 (Resolved): Parameter changes can be committed without clicking the commit button
1) Double-click on an actor and change a parameter.
2) Click the add button to trigger the "add parameter" dialog
3...
Sean Riddle

05/24/2010

07:12 PM Bug #5026: Error dialog pop up in RC3 when closing the ImageJ window after workflow execution.
This should be fixed.
I will need a person with a Windows machine to re-download the RC3 installer (which has chang...
David Welker
05:10 PM Bug #5026: Error dialog pop up in RC3 when closing the ImageJ window after workflow execution.
I think I have figured out what was causing this. It appears to be an incorrect path in the workflow. I have updated ... David Welker
10:16 AM Bug #5026: Error dialog pop up in RC3 when closing the ImageJ window after workflow execution.
I re-tested it. In my Windows 7 64 bit machine, the failure does *not* occur if I start Kepler using right-click menu... jianwu jianwu
09:42 AM Bug #5026: Error dialog pop up in RC3 when closing the ImageJ window after workflow execution.
I can reproduce this failure on a Windows 2003 machine where Kepler
was installed as admin and I'm logged in as a non...
Christopher Brooks
06:48 PM Bug #5022: 2.0-RC3 Windows installer creates Kepler 2.0-RC2 start menu choice, not Kepler 2.0-RC3
This appears to be fixed using the latest incarnation of the RC3 installer, which I am uploading now. Closing this bug. David Welker
06:44 PM Bug #5020: 2.0-RC3 installer: R Kepler Module is not optional
I agree that there is no reason to bother with this window. But it is a very minor issue and I do not think we should... David Welker
03:17 PM Bug #5028 (Resolved): dataturbine overwrites recent data when frequently detaching
When disconnecting from a DT server, a source must "detach" so that any uploaded data remain persistent. However, det... Daniel Crawl
03:08 PM Bug #4760: software to transfer sensor data from SPAN to DT
I've created a program to do this: util.SpanToDT. Daniel Crawl
02:22 PM Bug #5027: Users should be able to build installers for the Kepler-2.0 branch
I agree and think this is a good RFE.
However, the process of creating an installer at this point has too many movi...
David Welker
10:32 AM Bug #5027 (New): Users should be able to build installers for the Kepler-2.0 branch
Kepler users should be able to build installers so that they may deploy
a shrinkwrapped installation to other users....
Christopher Brooks
11:46 AM Bug #5025: Couldn't run the workflows 00-StatisticalSummary and 08-CommandLine_2
On my XP box w/ R 2.10.1:
00-StatisticalSummary - I have a different error when trying this workflow, it's described ...
Derik Barseghian
09:50 AM Bug #5025: Couldn't run the workflows 00-StatisticalSummary and 08-CommandLine_2
I can run these demos as a non-admin user under Windows 2003 Server R2
with a Kepler-2.0-RC3 installation that was in...
Christopher Brooks
11:44 AM Bug #4985: problem with workflows using Rexpression on Windows XP
Ben tried to replicate on his XP box, and my problem with an infinite loop in _read didn't happen to him. It's still ... Derik Barseghian
08:42 AM Bug #4983: cannot run kepler.sh in RC2
The acceptance criteria to close this bug would be for
"ant startup-script"
to create a kepler/kepler.sh script th...
Christopher Brooks

05/23/2010

10:48 PM Bug #5021: release date is wrong in installer readme
Fixed in the latest incarnation of the RC3 installer. David Welker
09:30 PM Bug #4983: cannot run kepler.sh in RC2
Should I close this bug? David Welker
09:29 PM Bug #4994: ant installer fails with "Invalid directory 'dir' ... outreach-2.0.0/resources"
Running "ant" to list the commands no longer lists the ant installer command. Closing this bug. David Welker
09:28 PM Bug #4997: SEEK/garpModel_ImageJ.xml has an exception while opening
The maintainer of this workflow is going to need to fix this. I have fixed the paths and put in different names to av... David Welker
08:51 PM Bug #5025: Couldn't run the workflows 00-StatisticalSummary and 08-CommandLine_2
Hmm... this isn't a problem for me with my Mac running R 2.10.1. Who else can reproduce this? David Welker
08:47 PM Bug #5026: Error dialog pop up in RC3 when closing the ImageJ window after workflow execution.
I am unable to reproduce this error on my mac. Who can reproduce this? David Welker

05/21/2010

01:05 AM Bug #4524: no prompt to save a changed report
The steps I'm taking are as described in comment#7. Yes, this happens in 2.0 as well. If it's not happening for you, ... Derik Barseghian

05/20/2010

09:20 PM Bug #3072: Security issues with distributed execution
It is fixed at version 24539. When a slave is started using startWithExecutionPolicy command, it will use master-slav... jianwu jianwu
08:33 PM Bug #4524: no prompt to save a changed report
I am still not seeing the behavior that you describe. This was however, a behavior that was present in a previous ve... debi staggs
04:42 PM Bug #4524: no prompt to save a changed report
Things still behave as described in comment7 at r24535 in reporting trunk for me, on both os X and windows XP. Derik Barseghian
11:55 AM Bug #4524: no prompt to save a changed report
Revision 24531 is the most recent, I have updated the files in both trunk and in the 2.0 branch. In this revision. De... debi staggs
11:18 AM Bug #4524: no prompt to save a changed report
This is at r24529 on reporting trunk. You haven't made changes post that revision that are checked in. Are you not se... Derik Barseghian
11:12 AM Bug #4524: no prompt to save a changed report
Can you please tell me what revision number you have for this ? What you are describing sounds like an old version. ... debi staggs
06:27 PM Bug #4647: Write documentation for Reporting in the style of Kepler Docs
I made a significant number of changes and committed to r1254 in kepler-docs, and 24536 (trunk) and r 24537 (2.0). Yo... Derik Barseghian
02:12 PM Bug #4647: Write documentation for Reporting in the style of Kepler Docs
O.K. that explains it. I had a local document that I used to create the document now currently named reporting.docx,... debi staggs
11:33 AM Bug #4647: Write documentation for Reporting in the style of Kepler Docs
The plan hasn't changed.
As mentioned, I made fixes and additions to wrp.docx (r1249). Afaik this doc only exists in...
Derik Barseghian
11:09 AM Bug #4647: Write documentation for Reporting in the style of Kepler Docs
I would like to know what version of this you have.
Also, where in svn have you been getting your current version ...
debi staggs
05:45 PM Bug #5026 (Resolved): Error dialog pop up in RC3 when closing the ImageJ window after workflow execution.
I found it when I executed the workflow: KeplerData\Kepler-2.0-Demos\demos\getting-started\03-ImageDisplay.xml on Win... jianwu jianwu
03:21 PM Bug #5025 (Resolved): Couldn't run the workflows 00-StatisticalSummary and 08-CommandLine_2
On windows vista (With R 2.9) and windows 7 (With R 2.10.1), I got the errors:
1(00-StatisticalSummary):
ptolem...
Jing Tao
03:01 PM Bug #5024 (Resolved): Uninstaller couldn't delete the rc3 folder on windows 7
Uninstaller couldn't remove the rc3 folder in Program File on Windows 7 (Vista). But it can remove desktop icon and k... Jing Tao
02:28 PM Bug #4985: problem with workflows using Rexpression on Windows XP
My problem in comment 1-- workflows using RExpression on XP never finish executing -- is still an issue in RC3 and on... Derik Barseghian
02:20 PM Bug #5023: The desktop icon of rc3 is a blank page on windows vista
bug #5023 is a duplicate of bug #5022 Christopher Brooks
02:03 PM Bug #5023: The desktop icon of rc3 is a blank page on windows vista
This happens on windows xp as well. Also, the icon and start menu call it RC2 rather than rc3. Jing Tao
02:00 PM Bug #5023 (Resolved): The desktop icon of rc3 is a blank page on windows vista
The icon is a blank page on windows. It was a issue on rc2 as well. Jing Tao
01:09 PM Bug #4983: cannot run kepler.sh in RC2
This works for me:
--start--
#!/bin/sh -x
# This script starts Kepler.
# Run with -h to see all command-line option...
Christopher Brooks
04:50 AM Bug #4983: cannot run kepler.sh in RC2
This bug is still true in RC 3. If you are in the same directory as kepler.sh or kepler.bat, it works, but if not, it... David Welker
12:56 PM Bug #5009: Opening two KARS that have the same Workflow, but that have different report layouts, will make the first layout refresh itself with the layout from the KAR that was opened most recently.
I spent a bit looking into this last night. I was able to keep the report layout from refreshing in the window in whi... Derik Barseghian
12:52 PM Bug #5022 (Resolved): 2.0-RC3 Windows installer creates Kepler 2.0-RC2 start menu choice, not Kepler 2.0-RC3
With the Kepler-2.0-RC3 Windows installer, the shortcut in Start->All Programs
->Kepler is Kepler 2.0-RC2, not Keple...
Christopher Brooks
12:34 PM Bug #4993: Kepler-2.0 cannot be built under windows because of apple-extensions
Closing.
I verified that I can build the Kepler-2.0 branch under Windows Server 2003.
Christopher Brooks
12:12 PM Bug #5017: ReportLayout LSID and referral list should be maintained
It might also be nice to see who originally created and who contributed to a report layout, esp in a 'publication kar... Derik Barseghian
11:55 AM Bug #5017: ReportLayout LSID and referral list should be maintained
Hmm, I'm trying to think of how we'd use the "provenance of the report layout". I suppose that could be useful for un... ben leinfelder
11:47 AM Bug #5017: ReportLayout LSID and referral list should be maintained
They're still not NamedObjs. Unfortunately the constructor for NamedObjIdReferralList needs a NamedObj. Aaron recomme... Derik Barseghian
11:34 AM Bug #5017: ReportLayout LSID and referral list should be maintained
are report layouts now NamedObjs or something?
Where is the referral list stored if not?
ben leinfelder
11:42 AM Bug #5021 (Resolved): release date is wrong in installer readme
change the date to the actual release date. it's set as may 12 right now. Chad Berkley
11:32 AM Bug #5019: R_output_example.xml fails
changed the workflow to use different columns (of doubles) for the array plotter input. ben leinfelder
04:29 AM Bug #5019 (Resolved): R_output_example.xml fails
The R_output_example.xml which is in /KeplerData/Kepler-2.0-Demos/demos/R/ fails to run properly. David Welker
10:28 AM Bug #5020 (Resolved): 2.0-RC3 installer: R Kepler Module is not optional
When installing Kepler-2.0-RC3, I'm presented with
two choices:
Kepler
R Kepler Module
Both are required, I can...
Christopher Brooks
09:03 AM Bug #4994: ant installer fails with "Invalid directory 'dir' ... outreach-2.0.0/resources"
In the Kepler-2.0 tree.
Running "ant" yields
[exec] installer Builds the Kepler installe...
Christopher Brooks
04:35 AM Bug #4994: ant installer fails with "Invalid directory 'dir' ... outreach-2.0.0/resources"
At this point, building installers is meant for releases. Later on, I would like to automate the entire install proce... David Welker
04:44 AM Bug #4984: user mailing list is wrong
The mailing list on the installer is now correct. The date is off, saying May 12 instead of May 20. However, rebuildi... David Welker
04:40 AM Bug #4987: RC2 cannot find R pkg
R is no longer installed, but must be installed manually.
If a workflow that depends on R fails because R is not pre...
David Welker
04:38 AM Bug #4991: Kepler-2.0-RC2 fails to start for a non-admin user after admin install
This should now work. David Welker
04:37 AM Bug #4992: In a shared installation, how does the user get the demo?
The demos are now copied to the users home directory upon start-up if they are not already there. David Welker
04:33 AM Bug #4997: SEEK/garpModel_ImageJ.xml has an exception while opening
This is still occurring in RC3. I think it is a problem with paths that is probably easily fixed. I will try to take ... David Welker
04:25 AM Bug #4996: 2.0-RC2 demos don't work
These demos now work. There might be others that are failing under RC3, but I have tested all of the demos in getting... David Welker
04:22 AM Bug #5005: regular user couldn't start kepler after it was installed on windows 7
Since published.txt and present.txt are now stored and written to the cache, this bug now should be fixed. Closing. David Welker

05/19/2010

04:37 PM Bug #5015: Export of runs contain different, and missing or extra reporting items now
Closing, opened bug#5018 for issue described above. Derik Barseghian
04:36 PM Bug #5018 (New): Items with the same LSID show with the same name in the Components Library
If you have two items within a KAR that have different filenames but the same LSID, they show as one item in the comp... Derik Barseghian
04:22 PM Bug #4969: Exported run-kar puts a roml at root of Components tree
I can't find the replication procedure for this, or it's no longer happening. Please reopen if you see this. Derik Barseghian
04:09 PM Bug #4524: no prompt to save a changed report
This doesn't work for me. If I design a workflow and report layout, save it to kar, change the report layout, and the... Derik Barseghian
03:58 PM Bug #4647: Write documentation for Reporting in the style of Kepler Docs
There are many errors in this documentation. It looks like my corrections and additions to the former wrp.docx (r 124... Derik Barseghian
03:08 PM Bug #5017 (Resolved): ReportLayout LSID and referral list should be maintained
When a user changes a reportLayout, its LSID revision should increment.
When a user changes a reportLayout with an L...
Derik Barseghian
02:59 PM Bug #4977: Can't associate multiple sets of reporting artifacts in one kar with different executions
was fixed at r24481 (trunk) and r24483 (2.0). Made reporting items depend on run when exporting a run-kar, and on imp... Derik Barseghian
01:28 PM Bug #4281: ant update produces message about running svn cleanup
This bug is now affecting me under Mac OS X. I've also seen it under
Windows Server 2003.
svn update yields:
[upda...
Christopher Brooks

05/18/2010

07:04 PM Bug #5015: Export of runs contain different, and missing or extra reporting items now
Essentially fixed in r24492 (trunk) and 24495 (2.0).
Now utilizing wrm.getSelectedRows to see if the save is for in ...
Derik Barseghian
01:47 PM Bug #5016 (Resolved): mirror dataturbine via command line
Currently the only way to start mirroring a DT server is via the rbnbAdmin tool, which requires a GUI. A command-line... Daniel Crawl
01:01 PM Bug #4977: Can't associate multiple sets of reporting artifacts in one kar with different executions
believe i have this working locally, but reporting's incrementRevision stuff needs to change a bit, esp in regard try... Derik Barseghian

05/17/2010

06:15 PM Bug #5015: Export of runs contain different, and missing or extra reporting items now
Partially fixed. Now, when exporting a run kar from WRM, you'll consistently get items like in "2nd export" listed ab... Derik Barseghian
11:55 AM Bug #5015 (Resolved): Export of runs contain different, and missing or extra reporting items now
After the changes to roll ROML lsids with changes, the first export of a run kar contains less items than the second ... Derik Barseghian
03:37 PM Bug #4647: Write documentation for Reporting in the style of Kepler Docs
This documentation for the WRP suite, now renamed 'Reporting' suite is now finished. debi staggs
01:56 PM Bug #4973: Save Archive sometimes saves more or less than it should in WRP
fixed in r24456 and r24457 Derik Barseghian
12:22 PM Bug #4973: Save Archive sometimes saves more or less than it should in WRP
This is happening again. To replicate: create a simple workflow and report, run it, export the run to a kar. Then Fil... Derik Barseghian
12:28 PM Bug #4969: Exported run-kar puts a roml at root of Components tree
This can happen again, though the replication procedure is different now (and i'm not sure what it is yet). Derik Barseghian
12:07 PM Bug #5009: Opening two KARS that have the same Workflow, but that have different report layouts, will make the first layout refresh itself with the layout from the KAR that was opened most recently.
Retargeting - this seems like something we should fix for wrp-2.0. It's possible to open a KAR, redesign the report, ... Derik Barseghian
11:11 AM Bug #5014 (Resolved): Add documentation to resources for the Workflow Run Manager module
Add resources > documentation into svn, and then place the workflow-run-manager documentation there. Documentation n... debi staggs
11:10 AM Bug #5013 (Resolved): Add documentation to resources for Tagging module
Add resources > documentation into svn, and then place the tagging documentation there. Documentation needs to be na... debi staggs

05/15/2010

11:18 AM Bug #5012: highlighted OK button in 'Annimate at runtime ...' menu item does not work.
Just to be clear, the problem here is that when a dialog comes up and the
user immediately hits the "Return/Enter" k...
Christopher Brooks
10:59 AM Bug #5012: highlighted OK button in 'Annimate at runtime ...' menu item does not work.
Attached is a test that uses JOptionPane that closes when the user hits "Return". Christopher Brooks

05/14/2010

05:38 PM Bug #5012 (New): highlighted OK button in 'Annimate at runtime ...' menu item does not work.
This bug is reported by a scientist user.
Under tools select 'Annimate at runtime...', it will ask you to for the ...
jianwu jianwu
04:56 PM Bug #4988: Instantiating a wf as a composite that has a tag doesn't work as expected
pushing to wrp-modules-2.X.Y as discussed in last call Derik Barseghian
04:52 PM Bug #4745: load & save site layout to metacat
uploading site layouts should be similar to the existing functionality that uploads workflows to the repository. Daniel Crawl
02:55 PM Bug #5009: Opening two KARS that have the same Workflow, but that have different report layouts, will make the first layout refresh itself with the layout from the KAR that was opened most recently.
This is because there can be multiple KARS that depend upon the same workflow, but have been saved with different rep... debi staggs
02:24 PM Bug #4896: When exporting multiple runs only 1 ROML is placed in KAR
I was getting to that, should have left the bug open though until it was done.
Now is complete. lsid's changing after...
debi staggs
02:05 PM Bug #5010: 2.0 branch fails to launch on XP - tries to compile apple-extensions-2.0
fixed in trunk and 2.0 branch.
I changed osextensions.txt to use semicolon instead of newlines to separate classes. ...
Derik Barseghian
11:21 AM Bug #5010: 2.0 branch fails to launch on XP - tries to compile apple-extensions-2.0
This is a newline issue again on osextension.txt. If I use Notepad to change the newlines both classes specified are ... Derik Barseghian

05/13/2010

06:29 PM Bug #5010: 2.0 branch fails to launch on XP - tries to compile apple-extensions-2.0
reporting trunk at r24422 is launching fine. Seems like maybe just an issue in 2.0 branch... Derik Barseghian
06:20 PM Bug #5010: 2.0 branch fails to launch on XP - tries to compile apple-extensions-2.0
This should block Release Candidate 3. David Welker
06:11 PM Bug #5010 (Resolved): 2.0 branch fails to launch on XP - tries to compile apple-extensions-2.0
I did a fresh checkout of 2.0 on windows XP, and I'm getting this compilation issue:
C:\kepler.modules.20\build-...
Derik Barseghian
04:54 PM Bug #4956: make sure matlab works with installed version of kepler 2.0
thanks. Fixing this for 64-bit Windows needs to get mingwdl.sh script 64 bit windows and update configure.in. The wor... jianwu jianwu
04:48 PM Bug #4956: make sure matlab works with installed version of kepler 2.0
Thanks, I merged in that updated version of configure.in and configure
into the trunk and the 8.0 release branch.
I...
Christopher Brooks
04:34 PM Bug #4956: make sure matlab works with installed version of kepler 2.0
Hi Christopher, thanks a lot for your update.
I tried it on 64 bit mac and 64 bit windows. As I expected, it works o...
jianwu jianwu
04:35 PM Bug #4896: When exporting multiple runs only 1 ROML is placed in KAR
Don't forget changing textfields, title, images, or Properties - when I make changes to these things the ROML LSID do... Derik Barseghian
01:39 PM Bug #4896: When exporting multiple runs only 1 ROML is placed in KAR
Report Layout lsid's are now changed whenever a report layout is modified. debi staggs
02:54 PM Bug #5006: create and copy demo dir directory into KeplerData on startup if doesn't exist
fixed at r24398(2.0) and r24396 (trunk). Derik Barseghian
02:54 PM Bug #4986: Problem with property DEMODIR on Windows XP
fixed at r24398(2.0) and r24396 (trunk) Derik Barseghian
01:54 PM Bug #5009 (Resolved): Opening two KARS that have the same Workflow, but that have different report layouts, will make the first layout refresh itself with the layout from the KAR that was opened most recently.
If you open two KARS associated with the same Workflow, but that have different report layouts, the report layout is ... debi staggs
01:40 PM Bug #4910: Test module installation system
I think that this has been resolved. So closing for now, unless there are any objections. debi staggs
01:37 PM Bug #4524: no prompt to save a changed report
They are now prompted to save, and if they answer yes, their work is saved to a KAR. debi staggs

05/12/2010

05:47 PM Bug #4956: make sure matlab works with installed version of kepler 2.0
This bug is closed, but I just thought I'd update the situation.
I was able to build a 32 bit ptmatlab.dll using Min...
Christopher Brooks
04:46 PM Bug #4915: PortParameters instantiated from Outline tab cannot be deleted
Aha!
I can replicate the bug.
Yay!
And the change to ParameterPort is required.
I'll close this now.
Christopher Brooks
04:41 PM Bug #4915: PortParameters instantiated from Outline tab cannot be deleted
I'm somewhat mystified here. I tried building with a clean tree
and I still can't completely replicate this.
There ...
Christopher Brooks
04:32 PM Bug #4915: PortParameters instantiated from Outline tab cannot be deleted
I should say that that's what the bug *was*. It currently doesn't happen since aaron added the nonDraggable parameter. Derik Barseghian
04:28 PM Bug #4915: PortParameters instantiated from Outline tab cannot be deleted
Hey Christopher,
I think our wires are still crossed. The bug is that when you have a PortParameter on canvas, and yo...
Derik Barseghian
04:24 PM Bug #4915: PortParameters instantiated from Outline tab cannot be deleted
With these two lines commented in ParameterPort constructor:
//Parameter notDraggable = new Parameter(this,"_...
Derik Barseghian
04:16 PM Bug #4915: PortParameters instantiated from Outline tab cannot be deleted
Hi Derik,
I still can't reproduce this.
Can you try it from a clean tree?
Note that "ant run" and "ant compile" *do ...
Christopher Brooks
04:15 PM Bug #4915: PortParameters instantiated from Outline tab cannot be deleted
If the Dot is highlighted, I can delete the entire Port Parameter. Christopher Brooks
04:06 PM Bug #4915: PortParameters instantiated from Outline tab cannot be deleted
The arrow is highlighted. It is not removed both with and without the changes to
ParameterPort
Christopher Brooks
04:02 PM Bug #4915: PortParameters instantiated from Outline tab cannot be deleted
Both Arrow and Dot are highlighted and both are removed. Christopher Brooks
03:14 PM Bug #4915: PortParameters instantiated from Outline tab cannot be deleted
Hey Christopher,
I just commented out these two lines in ParameterPort's constructor (which I believe is essentially...
Derik Barseghian
04:42 PM Bug #5005: regular user couldn't start kepler after it was installed on windows 7

<jing> now i will install rc1 as admin, then run it as regular user.
<jing> to see what will happen.
<davidwelker> o...
Jing Tao
04:09 PM Bug #5005: regular user couldn't start kepler after it was installed on windows 7
I changed the permission of the files present.txt and published.txt for regular user: adding write permission. Then i... Jing Tao
04:03 PM Bug #5005: regular user couldn't start kepler after it was installed on windows 7
Here is the error message i got:
C:\Program Files\Kepler-2.0-RC2>kepler.bat
Exception in thread "main" java.io.FileN...
Jing Tao
12:19 PM Bug #5005 (Resolved): regular user couldn't start kepler after it was installed on windows 7
Jianwu, can you start the kepler on windows 7. I can installed it successfully.
But it can't be started.
Last tim...
Jing Tao
02:24 PM Bug #5008 (Resolved): Research Copyrights before 2.0.0 release.
I need to review all the copyrights for each module before the release. Also, I want to research the implications of ... David Welker
02:14 PM Bug #4896: When exporting multiple runs only 1 ROML is placed in KAR
Have LSID revision number incrementing now. However, if the user opens a saved archive, and then opens a different sa... debi staggs
02:09 PM Bug #4524: no prompt to save a changed report
There is a prompt showing up now, but still need to add the save if they answer yes. debi staggs
12:25 PM Bug #5006 (Resolved): create and copy demo dir directory into KeplerData on startup if doesn't exist
Right now the installer does this - we decided to remove this from the installer, and do it during kepler startup ins... Derik Barseghian
11:55 AM Bug #4995: ant installer fails under Linux
If "ant help" reports an ant target, then users will run it.
Someone already was running "ant installer" on what look...
Christopher Brooks

05/11/2010

05:01 PM Bug #4938: Reporting suite no longer works on its own
should be fixed in trunk and 2.0.
reporting is the "new wrp" and depends on workflow-run-manager now, and the wrp s...
Derik Barseghian
10:50 AM Bug #4533: printing from the report viewer prints the workflow editor content
retargeting to post-2/wrp
This would be part of an entire Kepler UI redesign.
save for later as open...
debi staggs

05/10/2010

11:51 PM Bug #4982: NPE when starting with no network
Fixed. David Welker
04:13 PM Bug #4998: DataTurbine actor instantiation problem
fixed in r24320 (trunk) and r24321 (2.0) Derik Barseghian
12:53 PM Bug #4998 (Resolved): DataTurbine actor instantiation problem
Sometimes the DataTurbine actor gives an error during instantiation -- this will typically happen if you save a workf... Derik Barseghian
02:12 PM Bug #4938: Reporting suite no longer works on its own
Thanks for the offer David, but I'm going to try to get Reporting working on its own again hopefully doing away with ... Derik Barseghian
02:01 PM Bug #4938: Reporting suite no longer works on its own
Thanks for the offer David, but I'm going to try to get Reporting working on its own again hopefully doing away with ... Derik Barseghian
02:12 PM Bug #4896: When exporting multiple runs only 1 ROML is placed in KAR
It seems like this may also cause problems when there are two different ROMLs in different KARs in your local reposit... Derik Barseghian

05/09/2010

10:18 PM Bug #4996: 2.0-RC2 demos don't work
It looks like a version change from 2.0 to 2.0.0 is causing problems.
I removed my KeplerData directory and installed...
Christopher Brooks
09:55 PM Bug #4996 (Resolved): 2.0-RC2 demos don't work
Christopher Brooks
10:14 PM Bug #4997 (Resolved): SEEK/garpModel_ImageJ.xml has an exception while opening
In Kepler-2.0-RC2,
SEEK/garpModel_ImageJ.xml has an exception while opening
ptolemy.kernel.util.NameDuplication...
Christopher Brooks
09:57 PM Bug #4995: ant installer fails under Linux
Is the "ant installer" command even supposed to work under Linux? I was under the impression that this command was in... David Welker
05:15 PM Bug #4995 (In Progress): ant installer fails under Linux
In a clean Kepler 2.0 tree, "ant installer" fails under linux:
build-macapp:
[echo] jarbunder
[null...
Christopher Brooks
09:34 PM Bug #4990: Ptolemy documentation missing
Fixed!
It turns out that the links in the ptII/doc/mainVergilPtinyKepler.htm file were
incorrect. I added some test...
Christopher Brooks
05:12 PM Bug #4003: Support for non-GUI Kepler installer.
One workaround for this is to have IzPack use
<panel classname="FinishPanel"/>
instead of
<panel classname="Simple...
Christopher Brooks

05/07/2010

08:15 PM Bug #4994: ant installer fails with "Invalid directory 'dir' ... outreach-2.0.0/resources"
Until I can build an installer, I can't fix bug #4990. Christopher Brooks
08:14 PM Bug #4994 (Resolved): ant installer fails with "Invalid directory 'dir' ... outreach-2.0.0/resources"
Working from the instructions at
https://kepler-project.org/developers/teams/build/building-kepler-installers
and u...
Christopher Brooks
08:03 PM Bug #4281: ant update produces message about running svn cleanup
I was just bitten by this bug again.
The problem is that under Windows, if build-area gets updated by someone
else, t...
Christopher Brooks
06:47 PM Bug #4993 (Resolved): Kepler-2.0 cannot be built under windows because of apple-extensions
The instructions at
https://kepler-project.org/developers/teams/build/systems/build-system/extension-build-system
f...
Christopher Brooks
06:43 PM Bug #4992 (Resolved): In a shared installation, how does the user get the demo?
The intro screen says
"All listed demos are in the KeplerData/Kepler-2.0.Demos/getting-started which can be found ...
Christopher Brooks
06:39 PM Bug #4991 (Resolved): Kepler-2.0-RC2 fails to start for a non-admin user after admin install
I installed Kepler as admin under Windows 2003 and the installation works
fine.
If I try to start Kepler as a non-a...
Christopher Brooks
06:21 PM Bug #4977: Can't associate multiple sets of reporting artifacts in one kar with different executions
Changing the title of this bug and adding dependency.
To reiterate - if it were possible to make a KAR with multipl...
Derik Barseghian
06:18 PM Bug #4990 (Resolved): Ptolemy documentation missing
The Kepler-2.0-RC2 installer does not include files like ptII/doc/expression.pdf
To see this
1) start up Kepler, ...
Christopher Brooks
06:09 PM Bug #4973: Save Archive sometimes saves more or less than it should in WRP
Can't get this to happen anymore, closing. Derik Barseghian
05:59 PM Bug #4987: RC2 cannot find R pkg
The Mac installer (https://code.kepler-project.org/code/kepler/releases/installers/Kepler-2.0-RC2-osx.jar) could not ... Christopher Brooks
02:32 PM Bug #4987: RC2 cannot find R pkg
Same thing happened to me. Jing Tao
02:01 PM Bug #4987 (Resolved): RC2 cannot find R pkg
The RC2 installer can't find the R pkg: it's looking in r-2.0 but should be r-2.0.0. Daniel Crawl
05:56 PM Bug #4989 (Resolved): The installer should offer to start Kepler
The installer should offer to start Kepler upon completion so that
the user does not have to go digging for it.
See...
Christopher Brooks
05:45 PM Bug #4984: user mailing list is wrong
Also, we should be very precise about the version.
The installer intro screen says
Kepler 2.0 RC2
but when I install...
Christopher Brooks
05:40 PM Bug #4984: user mailing list is wrong
Also, the date in the installer is wrong, it says "April 29, 2010". Christopher Brooks
10:41 AM Bug #4984: user mailing list is wrong
The intro in the installer says:
User discussion mailing list: kepler-dev@ecoinformatics.org
Daniel Crawl
10:39 AM Bug #4984 (Resolved): user mailing list is wrong
Daniel Crawl
05:44 PM Bug #4978: Create additional 'module' property for any menu entries that are inserted by non-core modules
The configuration system already has a mechanism to remove properties when the module that added them is no longer pr... Daniel Crawl
05:28 PM Bug #4988 (Resolved): Instantiating a wf as a composite that has a tag doesn't work as expected
If I have a workflow, drag a composite onto canvas, open the composite and tag it, then close the composite, I see th... Derik Barseghian
05:05 PM Bug #4943: RC5 Installer Tracking Bug
Hi Jing, I agree with you. Normally users do not use 'run as administrator' much. jianwu jianwu
04:59 PM Bug #4943: RC5 Installer Tracking Bug
Yep, if I right click the icon and choose "Run as the Administrator", kepler will start. RC1 doesn't need this. I thi... Jing Tao
03:58 PM Bug #4943: RC5 Installer Tracking Bug
Jing, I have to right click the icon and use 'Run as administrator', or start cmd using 'Run as administrator' and ex... jianwu jianwu
03:41 PM Bug #4943: RC5 Installer Tracking Bug
Jianwu, can you start the kepler on windows 7. I can installed it successfully. But it can't be started.
Last time, ...
Jing Tao
03:19 PM Bug #4943: RC5 Installer Tracking Bug
On window 7, kepler desktop icon us a blank page. Jing Tao
11:57 AM Bug #4943: RC5 Installer Tracking Bug
It works when I installed it in Windows 7 64 bit. One only issue I found is that the generated desktop icon is not Ke... jianwu jianwu
04:53 PM Bug #4524: no prompt to save a changed report
This dialog also comes up in at least two cases when it shouldn't:
1) don't have a report design underway
2) when cha...
Derik Barseghian
02:06 PM Bug #4985: problem with workflows using Rexpression on Windows XP
I found two workflows can not be executed on Windows 7 64 bit: Kepler-2.0.0-Demos\demos\R\r-2.0.0\demos\R\localFile_t... jianwu jianwu
01:31 PM Bug #4985 (Resolved): problem with workflows using Rexpression on Windows XP
On Windows XP workflows using RExpression don't finish execution. This happens in RC2 and wrp trunk on XP, the consol... Derik Barseghian
01:36 PM Bug #4986 (Resolved): Problem with property DEMODIR on Windows XP
On Windows XP I have problems with workflows that have paths like 03-ImageDisplay.xml. I think this is an issue with ... Derik Barseghian
12:03 PM Bug #4938: Reporting suite no longer works on its own
If reporting is no longer working independently, it should be converted from a suite to an ordinary module. That invo... David Welker
11:16 AM Bug #4938: Reporting suite no longer works on its own
I think it would be really optimal to have Reporting work on its own when we release wrp-2.0. This would be more cons... Derik Barseghian
09:25 AM Bug #4938: Reporting suite no longer works on its own
Hi Derik,
I see that you were working on this, are we intending to do take the steps you described in your last comm...
debi staggs
11:37 AM Bug #4956: make sure matlab works with installed version of kepler 2.0
works for me on 32 bit linux. closing the bug. jianwu jianwu
11:06 AM Bug #4956: make sure matlab works with installed version of kepler 2.0
works for me on 32 bit mac and windows with RC2 Daniel Crawl
11:10 AM Bug #4983: cannot run kepler.sh in RC2
This works if kepler.sh/bat is in the current directory. Daniel Crawl
10:08 AM Bug #4983 (Resolved): cannot run kepler.sh in RC2
# /Applications/Kepler-2.0-RC2/Kepler.app/Kepler/kepler.sh
Exception in thread "main" java.lang.NoClassDefFoundErro...
Daniel Crawl
09:43 AM Bug #4982 (Resolved): NPE when starting with no network
NPE when starting with no network:
[run] Exception in thread "main" java.lang.NullPointerException
[r...
Daniel Crawl

05/06/2010

04:33 PM Bug #4981 (In Progress): RIO pdfs don't show up in the Component Library
If you create a workflow and a simple report, execute, export the run to a local repository, then expand the kar in t... Derik Barseghian
04:31 PM Bug #3976: Update Documentation for 2.0 release
Unless anyone has any objections, I am now closing this bug. debi staggs
03:08 PM Bug #4956: make sure matlab works with installed version of kepler 2.0
re-assign to Jianwu jianwu jianwu
02:03 PM Bug #4973: Save Archive sometimes saves more or less than it should in WRP
The issues wrt entire additional sets of run and reporting artifacts should be fixed now.
The issue of Save Archive s...
Derik Barseghian
02:02 PM Bug #4976: Importing run archive from a different namespace is broken
fixed in r24244 (trunk) and r24246 (2.0). Derik Barseghian
12:10 PM Bug #4980: Tagging a run now creates two identical tags in the GUI
Fixed in r24242 on trunk and r24243 on branch. Sean Riddle
 

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