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From 01/13/2008 to 02/11/2008

02/11/2008

01:51 PM Bug #3144 (Resolved): add link in OSX Applications folder
This bug is spawned from bug 3119. We need to figure out how to put a shortcut into the Applications folder on osx. Chad Berkley
01:50 PM Bug #3119: Need Installer shortcuts for Windows
I'm going to close this bug and open another for osx since this is now fixed for windows. Chad Berkley
12:54 PM Bug #3119: Need Installer shortcuts for Windows
Simply copying the kepler.app to the Applications directory will not work (due to some relative paths). To make the $... Dan Higgins
12:42 PM Bug #3119: Need Installer shortcuts for Windows
I think we just copy the .app to the /Applications directory. Then users can drag it to the doc. that's what usuall... Chad Berkley
12:23 PM Bug #3119: Need Installer shortcuts for Windows
I am not sure what 'shortcuts' mean for the Mac (an icon on the desktop?). Apparently, shortcuts for the Mac is NOT s... Dan Higgins
12:11 PM Bug #3119: Need Installer shortcuts for Windows
dan got this working for windows. need to add it for the mac. Chad Berkley
01:45 PM Bug #2964: Change RExpression plotting actors to allow custom axis and title labels
using R "attributes" of objects, we can add some metadata to the variables as the tokens are made available in R.
In ...
ben leinfelder
12:26 PM Bug #3143 (New): dataFrame_R cache problem under parallels
I'm currently getting the following error with the demos/R/dataFrame_R.xml workflow when trying to run it under Paral... Derik Barseghian

02/09/2008

02:24 PM Bug #2959: Need for Multiport input for RExpression actor
The latest incarnation is to put any multiport input into an R list. The list variable name is the name of the input... ben leinfelder

02/08/2008

11:11 AM Bug #2959: Need for Multiport input for RExpression actor
The RExpresion actor should definitely not depend on upstream port names, because that makes the script non-portable ... Matt Jones
10:09 AM Bug #2959: Need for Multiport input for RExpression actor
A note on variable naming conflicts:
-Take the case of 2 EML actors sitting upstream from an RExpression actor. Both...
ben leinfelder
04:14 PM Bug #2959: Need for Multiport input for RExpression actor
I propose (and have made the modification locally) that an RExpression actor with a multi port should:
1. handle inpu...
ben leinfelder
11:05 AM Bug #2321: merge exp files into ptolemy CVS
PortEvent and PortEventListener have been renamed. Daniel Crawl
09:05 AM Bug #3099: GetDocumentationAction.java needs to be moved into pII source
included in RC1 - retarget ben leinfelder
08:41 AM Bug #3053: Multiple Documentation windows not possible
this is part of RC1 - retargeting ben leinfelder
08:40 AM Bug #2490: Get ecogrid endpoints from Ecogrid registry
this is part of RC1 - retargeting bug ben leinfelder

02/07/2008

03:26 PM Bug #3123: Change icons to be kepler specific
dan fixed this. both mac and windows launchers now have the green K icon. Chad Berkley
03:21 PM Bug #3134: demo workflow 02-LotkaVolterraPredatorPrey.xml needs windows resaved
After Edward and Christopher fixed the bug, I rearranged the windows and resaved the workflows. They all open with t... Chad Berkley
04:14 PM Bug #3134: demo workflow 02-LotkaVolterraPredatorPrey.xml needs windows resaved
Edward fixed this bug in several files today
2008-02-06 15:55 eal
* ptolemy/actor/: gui/AbstractPlaceableA...
Christopher Brooks
02:45 PM Bug #2937: Differentiate error msg between broken dataset links and insufficient access
this is related to bug 3132 in that data download errors are not self correcting. ben leinfelder
02:35 PM Bug #2961: Include option in EMLDatasource actor to use 'most recent' data
this change has been included in RC1 ben leinfelder
02:33 PM Bug #2939: Add ability to access password protected EarthGrid data from within Kepler
This has been included with RC1 and the Ecogrid-1.0.0 upgrade ben leinfelder
02:25 PM Bug #3131: R is not added to the path
R is now added to the path on windows. We are not including the R installation for the mac or linux installer so i'm... Chad Berkley
12:02 PM Bug #3140 (Resolved): RBNBToKepler2 actor output port generation problem
This actor is having problems dealing with output port generation when pointed at "niagara-dev.sdsc.edu:3333" (an sds... Derik Barseghian
11:54 AM Bug #3039: EML2 Datasource (from search) does not include Documentation
Spoke with chad b. about this - it would be better if object instantiation did not circumvent the actor library cache... ben leinfelder
10:14 AM Bug #3138 (Resolved): remove the distributed options menu item for 1.0 release
We are not going to support distributed computing in 1.0 so the menu option should be removed for the release. Chad Berkley

02/06/2008

10:24 AM Bug #3039: EML2 Datasource (from search) does not include Documentation
Got it working so that when EML Datasource actors are added to the search results, documentation is added to them bas... ben leinfelder
05:06 PM Bug #3039: EML2 Datasource (from search) does not include Documentation
I've been looking at this for a bit.
My plan was to look up the EML actor that is in the component library (it contai...
ben leinfelder
07:51 PM Bug #3129: links exist to ptII demos that do not work
I looked into this, and I think the problem is that I was running out
of memory, see http://bugzilla.ecoinformatics.o...
Christopher Brooks
06:47 PM Bug #3129: links exist to ptII demos that do not work
If you tell me what demos to exclude, I can update
completeDemosPtinyKepler.htm in the rel-7-0-beta-2 branch and the...
Christopher Brooks
06:50 PM Bug #3127: workflows can open off the screen
BTW - There is some code in Ptolemy that does this, see
2007-08-21 12:14 cxh
* ptolemy/actor/gui/WindowPro...
Christopher Brooks
06:22 PM Bug #3134: demo workflow 02-LotkaVolterraPredatorPrey.xml needs windows resaved
It looks like saving the location of the Display window is broken
in Ptolemy II 7.0.beta, so it is likely broken in K...
Christopher Brooks

02/05/2008

02:50 PM Bug #3118: remove "Add" button from data Sources dialog
As part of RC1, we've removed (comment out) the Add button from the GUI. All the other underlying code for searching... ben leinfelder
02:44 PM Bug #2490: Get ecogrid endpoints from Ecogrid registry
Endpoints are now automatically refreshing from the registry when a user first goes to the Data search tab. This sti... ben leinfelder
02:36 PM Bug #3134: demo workflow 02-LotkaVolterraPredatorPrey.xml needs windows resaved
We seem to have lost the ability to save the position of output windows. I move the windows, then resave the workflo... Chad Berkley
02:12 PM Bug #3134: demo workflow 02-LotkaVolterraPredatorPrey.xml needs windows resaved
same with 06-webServicesAndDataTransformation.xml Chad Berkley
02:06 PM Bug #3134 (Resolved): demo workflow 02-LotkaVolterraPredatorPrey.xml needs windows resaved
The windows were saved over top of one another. If they are tiled, then resaved, it will be easier for people to see... Chad Berkley
02:08 PM Bug #3135 (Resolved): semantic type and class params need special handling in doc window
When a documentation window opens, it needs to be made aware that the SemanticType and class attributes of an actor s... Chad Berkley
02:02 PM Bug #3131: R is not added to the path
The error is actually with the ExternalExec actor in the 08-CommandLine_2.xml demo. It tries to call R on the comman... Chad Berkley
01:51 PM Bug #3131: R is not added to the path
*** Bug 3133 has been marked as a duplicate of this bug. *** Chad Berkley
01:40 PM Bug #3131: R is not added to the path
You should not need to add R to the path if it is installed with the installer. If the R.zip is installed inside $KEP... Dan Higgins
01:31 PM Bug #3131 (Resolved): R is not added to the path
The errors cxh got with R seem to be coming from the fact that R is installed, but not put into the path on windows. ... Chad Berkley
01:51 PM Bug #3133: R is not added to the path
accidentally submitted this twice.
*** This bug has been marked as a duplicate of bug 3131 ***
Chad Berkley
01:50 PM Bug #3133 (Resolved): R is not added to the path
The errors cxh got with R seem to be coming from the fact that R is installed, but not put into the path on windows. ... Chad Berkley
01:46 PM Bug #3132 (Resolved): Once an EML dataset gets an error in downloading, cache interface will keep getting same error
Somehow if an EML dataset can't get data from ecogrid server (e.g. a network glitch), kepler system will keep getting... Jing Tao
01:28 PM Bug #3130 (Resolved): Add an accelerator (keyboard shortcut) for opening a new blank workflow
Add an accelerator for opening a new blank workflow canvas (File => New Workflow => Blank).
Unless 'n' is taken I ...
Derik Barseghian
01:18 PM Bug #3129 (Resolved): links exist to ptII demos that do not work
There are links in the documentation for kepler to ptII demos that don't work. These demos need to be pulled out. T... Chad Berkley
11:58 AM Bug #3128 (Resolved): Kepler devel tree can't be compiled in java 1.6.0: DBConnection problem
Christopher Brooks reported he couldn't compile the src code -
When I run:
export KEPLER=c:/Kepler/kepler-1.0.0...
Jing Tao
10:02 AM Bug #2967: Add a 'View data' menu to data source actors
The "Preview" action on the EMLDatasource handles the features requested in this bug.
Preview is available starting i...
ben leinfelder
09:54 AM Bug #2966: Add a 'Preview data' menu to data source actors
this change has been included as part of 1.0.0RC1
additional bugs have been reported in a different bugzilla entry.
ben leinfelder
09:44 AM Bug #3125: Preview actor issues with EMLDatasource
Fixes for the issues:
1. Reworked the initialize()/fire() methods for the "As Column Vector" and "As Column Based Rec...
ben leinfelder

02/04/2008

01:29 PM Bug #3127 (Resolved): workflows can open off the screen
When a workflow is saved, the screen coords of where the window is are also saved. If the screen it was saved on was... Chad Berkley
01:15 PM Bug #1838: need user level documentation
User documentation has been created and is now part of the kepler release. any further bugs about this issue should ... Chad Berkley
01:02 PM Bug #1838: need user level documentation
retarget to 1.0 Chad Berkley
01:04 PM Bug #2531: The link from Kepler intro page to the Ptolemy quick links page is broken
retarget to 1.0 Chad Berkley
01:03 PM Bug #2490: Get ecogrid endpoints from Ecogrid registry
retarget to 1.0 Chad Berkley
01:03 PM Bug #3026: Actor documentation does not appear in older workflows
retarget to 1.0 Chad Berkley
09:52 AM Bug #3126 (Resolved): add R system installation to the Mac installer
The R system is installed under windows as an option, but not under MacOS X. We need to add this so that Mac users c... Matt Jones

02/02/2008

06:13 PM Bug #3125 (Resolved): Preview actor issues with EMLDatasource
Behavior for this action is inconsistent.
1. Previewing when the output format is set to "As Column Vector" shows no...
ben leinfelder
05:27 PM Bug #3124 (Resolved): Automatically refresh ecogrid sources (endpoints) once per Kepler
Now that there are two ways in which to refresh the available Ecogrid services (as registered in the registry), the r... ben leinfelder

02/01/2008

03:59 PM Bug #3119: Need Installer shortcuts for Windows
Information is in IzPack documentation on shortcuts.
Also see as an example
IzPack\src\dist-files\shortcutSpec.xml
Dan Higgins
10:58 AM Bug #3119 (Resolved): Need Installer shortcuts for Windows
Shortcuts for the IzPack installer system have not yet been implemented, although it is possible to create such short... Dan Higgins
03:54 PM Bug #3123 (Resolved): Change icons to be kepler specific
Icons installed by the kepler installer need to be the kepler icons instead of the generic ones. Chad Berkley
03:34 PM Bug #3122 (Resolved): Get installer size down
Currently with documentation, the installer jar file is 174MB. We need to go through and make sure everything in the... Chad Berkley
11:02 AM Bug #3052: Installer crashes with EXC_BAD_ACCESS
This bug is now invalid with the use of the new IzPack installer system Dan Higgins
10:49 AM Bug #1334: need installer for kepler
IzPack installer system that is open-source and uses ant has been implemented and is in build.xml ant file.
Thus, cl...
Dan Higgins
02:20 AM Bug #3118 (Resolved): remove "Add" button from data Sources dialog
The data Sources dialog (accessible from the Search pane) has been updated to include a 'Refresh' function that obsol... Matt Jones
02:14 AM Bug #3030: Documentation says that kepler is version 1.0.0alpha8
Fixed by removing this reference to the version number. Matt Jones
02:13 AM Bug #3030: Documentation says that kepler is version 1.0.0alpha8
I removed this from the documentation page. Now the welcome screen is the only place that displays the version numbe... Matt Jones
02:08 AM Bug #1838: need user level documentation
Documentation needs to be packaged as PDFs for the RC1 release and the links for the User Guide and Actor Reference m... Matt Jones
06:09 PM Bug #3117: The refresh button function in source window was messed up by a KeplerSlaveNode entry in the registry
added exception handling when merging registry list so that invalid entries do not invalidate the entire operation ben leinfelder
05:28 PM Bug #3117 (Resolved): The refresh button function in source window was messed up by a KeplerSlaveNode entry in the registry
By accident, I left a KeplerSlaveNode entry in the ecogrid registry. However when click refresh button in source wind... Jing Tao

01/31/2008

02:31 PM Bug #3097: incorrect classpath in generated ptexecute.sh and momlexecute.sh
crawl will check in fixes after RC1

Dan Higgins
Dan Higgins
02:10 PM Bug #3115: Need to check Kepler for memory leaks
This thread concerning memory leaks might be of use:
Jackie wrote:
I narrowed down the memory leak a bit and found ...
Christopher Brooks
01:04 PM Bug #3115 (Resolved): Need to check Kepler for memory leaks
Need to do some testing to see if Kepler memory leaks occur (i.e. does memory use increase even when workflows closed... Dan Higgins
02:07 PM Bug #3107: http links don't work: Unsupported file type or connection not supported
moving to 1.0 Chad Berkley
02:07 PM Bug #2853: Documentation (where to save it; customization)
moving to 1.0 Chad Berkley
01:54 PM Bug #3116: Web page rendering needs to be made w3c compliant
This is really more of a Java bug than anything.
Ptolemy uses javax.swing.JEditorPane in actor.gui.HTMLViewer
In Pto...
Christopher Brooks
01:22 PM Bug #3116 (New): Web page rendering needs to be made w3c compliant
The rendering engine used in ptII/kepler is about 10 years out of date. It gets confused on elements like end tags a... Chad Berkley
01:43 PM Bug #3108: ENM GARP Baseline 3-Actor GARP - Browser Display demo fails with NameDuplication: convertTo?
To replicate this,
1. ant run-dev
2. In the Welcome Window, click on "Getting Started"
3. This brings up kepler/con...
Christopher Brooks
01:01 PM Bug #3108: ENM GARP Baseline 3-Actor GARP - Browser Display demo fails with NameDuplication: convertTo?
I cannot figure out just what workflows the errors reported correspond to. e.g 'Baseline 3-Actor GARP -Browser Displa... Dan Higgins

01/30/2008

04:59 PM Bug #3106: Out of memory while opening all demos, is -Xss5m or SVG the problem?
I did an experiment under Windows with Java 1.5.0_14 where I changed
-Xmx and -Xss and then used the about: facility ...
Christopher Brooks
04:20 PM Bug #3110: Can't access actors via http
Sorry, I hit return too quickly.
Kepler cannot access MoML actors defined remotely.
The same model works fine in Pto...
Christopher Brooks
04:14 PM Bug #3110 (Resolved): Can't access actors via http
ptolemy.kernel.util.IllegalActionException: Cannot find class: Waveform
Because:
-- ptolemy.eecs.berkeley.edu
-- X...
Christopher Brooks

01/29/2008

03:15 PM Bug #3078: No documentation for the 'SSH to Execute' actor
I added docs to the MOML files for several SSH actors and made some modifications to existing docs to improve readabi... Kirsten Menger-Anderson
11:34 AM Bug #3109: Many demos linked to getting started don't work
removed two links. one to the PIW workflow which no longer has a web service and one to the Grass->ARC test that no ... Chad Berkley
10:56 AM Bug #3109 (Resolved): Many demos linked to getting started don't work
We need to either fix or remove the links from introScientist.htm that won't load. many are the web service ones tha... Chad Berkley
10:59 AM Bug #3106: Out of memory while opening all demos, is -Xss5m or SVG the problem?
As I remember, the -Xss5m switch was included because setting the stack memory this way was needed to insure that sev... Dan Higgins
08:54 PM Bug #3106 (New): Out of memory while opening all demos, is -Xss5m or SVG the problem?
I'm marking this as having a target milestone of 1.0.0rc1 because
I suspect we should remove -Xss5m from build.xml b...
Christopher Brooks
10:19 AM Bug #3105: Getting Started link on Welcome Page should lead to demos
i changed the link to introScientests.htm. Tested it and it worked. Chad Berkley
04:19 PM Bug #3105 (Resolved): Getting Started link on Welcome Page should lead to demos
This might be old news, but I'll report it anyway.
When I start up Kepler, the "Welcome" window has a link "Gettin...
Christopher Brooks
01:04 AM Bug #2531: The link from Kepler intro page to the Ptolemy quick links page is broken
Ok, I spent a little time tuning up the demos.
- The Kepler configuration now includes _classesToRemove, which is an
...
Christopher Brooks
10:25 PM Bug #3108 (Resolved): ENM GARP Baseline 3-Actor GARP - Browser Display demo fails with NameDuplication: convertTo?
The problems below are probably common knowledge, but I've fixed up
the "about:" facility so that it will traverse t...
Christopher Brooks
09:39 PM Bug #3107 (Resolved): http links don't work: Unsupported file type or connection not supported
Under Java 1.5.0 and Windows XP, if I try to click on a http: link
in an html window, I get:
Unsupported file ...
Christopher Brooks
04:24 PM Bug #3072: Security issues with distributed execution
Its the ability to use the command line actor (for access to various custom simulation models) and the scripting acto... Matt Jones

01/28/2008

03:58 PM Bug #2363: Move Actions out of BasicGraphController
If we solve this bug and move more code out of
exp/ptolemy/vergil/basic/BasicGraphController.java, then it will be e...
Christopher Brooks
03:52 PM Bug #3072: Security issues with distributed execution
Ptolemy is reasonably well set up to use the Java sandbox, see $PTII/doc/sandbox.htm for details.
The sandbox has fa...
Christopher Brooks
03:38 PM Bug #3056: unable to print output of Display actor
The issue here is that the Display actor does not implement the Java
Printable interface
Display has an inner class ...
Christopher Brooks
02:12 PM Bug #2921: Way to temporarily comment out actors or connections
I'll take this bug, which discusses that it would be nice to have
a way to temporarily disable an actor or connections.
Christopher Brooks
02:03 PM Bug #3078: No documentation for the 'SSH to Execute' actor
There is no documentation in the moml file. I've written to Kirsten to see if we can get some. Chad Berkley
01:59 PM Bug #2318: Copyrights and licenses of subpackages need to be handled
FOSSology (http://www.fossology.org/) could help manage the copyrights.
However, installing it is not easy, it requir...
Christopher Brooks
01:19 PM Bug #2914: Broken link on a web page
removed the link from the page. Chad Berkley
01:11 PM Bug #3089: Actor port properties lost after saving to library
There was a bug in ActorMetadata where ports get added to the namedObj. The port attributes were getting added to th... Chad Berkley

01/26/2008

10:27 AM Bug #2321: merge exp files into ptolemy CVS
I merged in several files from kepler into ptII.
See kepler/src/exp/expfiles-merge-notes.txt
To merge more files, Po...
Christopher Brooks

01/25/2008

12:37 PM Bug #3094: File keyboard shortcuts use ctrl key instead of apple key on Mac
The change Christopher mentions fixed Configure Actor, as mentioned in comment #3.
I have not been able to find any ...
Derik Barseghian
12:02 PM Bug #3094: File keyboard shortcuts use ctrl key instead of apple key on Mac
I folded a change from Derek (via Chad) to ConfigurationAction.java
into the ptII tree.
If you are having problems w...
Christopher Brooks
10:48 AM Bug #2834: Incorrect Actor Icons
added matlab icon and assigned it to the matlab actor
changed icon to "control" icon for the following:
exceptionCon...
Chad Berkley
05:08 PM Bug #3099: GetDocumentationAction.java needs to be moved into pII source
Sorry for the confusion on this.
I went ahead and moved the code into ptII.
Perhaps 3053 could be reopened at a lower...
Christopher Brooks
05:00 PM Bug #3099: GetDocumentationAction.java needs to be moved into pII source
Darn! it was moved to pII. Undo! closing this bug (again).
(sorry about all the bugzilla emails)
ben leinfelder
04:51 PM Bug #3099: GetDocumentationAction.java needs to be moved into pII source
This is actually a bug for GetDocumentationAction (not Top). Reopening this one since apparently you _can_ have mult... ben leinfelder
04:13 PM Bug #3099: GetDocumentationAction.java needs to be moved into pII source
I'm closing this, as I've updated the Ptolemy II tree with the Kepler
version of Top.
Christopher Brooks
05:01 PM Bug #3075: Fold Top,java file in $KEPLER/src/exp/ dir into Ptolemy src
This was moved into the pII tree and removed from kepler's src/exp
cvs log entry:
brooks 08/01/24 16:12:38
...
ben leinfelder
04:49 PM Bug #3103 (Resolved): Building actor documentation from within Kepler fails
If the actor documentation does not exist, then when I select
Documentation -> Display, a window comes up that allow...
Christopher Brooks
04:48 PM Bug #2712: Problem with EML2DataSource with extra cols in csv file
There is now a new parameter in the EML Datasource actor for "Allow lenient data parsing"
When it is checked (true), ...
ben leinfelder
04:02 PM Bug #3053: Multiple Documentation windows not possible
This bug seems to only affect Kepler and not Ptolemy?
If I open a model in Ptolemy, I can right click on an actor, se...
Christopher Brooks

01/24/2008

03:57 PM Bug #3101: Inclusion of R executable for Mac and Linux ?
*** Bug 3102 has been marked as a duplicate of this bug. *** Dan Higgins
03:34 PM Bug #3101 (Resolved): Inclusion of R executable for Mac and Linux ?
We included a set of R executables for Windows as of beta3 and plan on doing so also for RC1. However, we do not incl... Dan Higgins
03:57 PM Bug #3102: Inclusion of R executable for Mac and Linux ?
duplicate
*** This bug has been marked as a duplicate of bug 3101 ***
Dan Higgins
03:38 PM Bug #3102 (Resolved): Inclusion of R executable for Mac and Linux ?
We included a set of R executables for Windows as of beta3 and plan on doing so also for RC1. However, we do not incl... Dan Higgins
03:26 PM Bug #2712: Problem with EML2DataSource with extra cols in csv file
Well, being lenient with this example dataset works...until we get to a record with 2.5 in a column described as an I... ben leinfelder
02:16 PM Bug #3075: Fold Top,java file in $KEPLER/src/exp/ dir into Ptolemy src
I've reworked the Top file we have in our src/exp tree:
-Removed the use of the Configuration class within Top
-Added...
ben leinfelder
01:20 PM Bug #2572: Export KAR can produce several actors with the same lsid
I fixed this bug by detecting the lsid collision and asking the user if he/she would like to change the id of the com... Chad Berkley
09:56 AM Bug #3053: Multiple Documentation windows not possible
entered a new bug (3099) that finishes what this one started. ben leinfelder
06:13 PM Bug #3053: Multiple Documentation windows not possible
Committed changes to:
src/exp/ptolemy/vergil/basic GetDocumentationAction.java
configs/ptolemy/configs/kepler configu...
ben leinfelder
08:45 AM Bug #3099: GetDocumentationAction.java needs to be moved into pII source
Transferring to Chad since he has write access to the pII project and has also edited this file previously (v1.32 on ... ben leinfelder
06:20 PM Bug #3099 (Resolved): GetDocumentationAction.java needs to be moved into pII source
Rather than maintain a copy of this class in the src/exp directory, it should be included in in the ptolemy project. ... ben leinfelder
06:18 PM Bug #3094: File keyboard shortcuts use ctrl key instead of apple key on Mac
The Accelerators for the File Menu for OS X, i.e.
* Open File
* Save
* Print
* Close
have been fixed.
Configur...
Derik Barseghian
04:55 PM Bug #3093: Unit test org.nddp.TestCollectionIOPort does not compile
I added (empty) addInitializable() and removeInitializable() methods required by the ptolemy.actor.Initializable inte... Timothy McPhillips
04:51 PM Bug #3091: Warnings building org.nddp.DataTypes
I added two type-casts suggested by the compiler, and this eliminated the warnings. Timothy McPhillips

01/23/2008

03:47 PM Bug #1334: need installer for kepler
An open source installer package is made up of several packages, especially for use on Windows OSs. The various steps... Dan Higgins
03:27 PM Bug #3053: Multiple Documentation windows not possible
Change to allow multiple documentation windows at once would be in the pII source:
ptolemy.vergil.basic.GetDocumentat...
ben leinfelder
02:03 PM Bug #3053: Multiple Documentation windows not possible
taking a stab at this for bug day... ben leinfelder
02:25 PM Bug #3098: Cannot drag SampleDelay actor onto canvas
Was a problem with my checkout. Daniel Crawl
12:14 PM Bug #3098: Cannot drag SampleDelay actor onto canvas
Dragging SampleDelay actor works for me under Windows with no error message at least immediately after startup Dan Higgins
11:58 AM Bug #3098 (Resolved): Cannot drag SampleDelay actor onto canvas
Dragging SampleDelay onto canvas brings up an error message:
Cannot create entity without a class name. in [extern...
Daniel Crawl
01:18 PM Bug #2490: Get ecogrid endpoints from Ecogrid registry
Refreshing the list of available services is working nicely locally - there's even an option to retain the existing (... ben leinfelder
01:04 PM Bug #3083: Need sample CommandLine workflows for Windows
Discovered the the problem could be reproduced when kepler was launched from kepler.bat or kepler.sh. Using the comma... Dan Higgins
11:11 AM Bug #3083: Need sample CommandLine workflows for Windows
Works for me under Windows and MacOSX Dan Higgins
10:42 AM Bug #3083: Need sample CommandLine workflows for Windows
I'm having trouble getting the CommandLine1 workflow to run on my PC/the latest nightly build (20081323). The workflo... Kirsten Menger-Anderson
12:14 PM Bug #3097: incorrect classpath in generated ptexecute.sh and momlexecute.sh
ClassPathHacker is the name given by the author to his class for dynamic classpath additions. Using the authors choic... Dan Higgins
11:37 AM Bug #3097: incorrect classpath in generated ptexecute.sh and momlexecute.sh
A class with the name 'ClassPathHacker' worries me a bit. I think we need a robust class loader that can work under a... Matt Jones
11:27 AM Bug #3097 (Resolved): incorrect classpath in generated ptexecute.sh and momlexecute.sh
The scripts ptexecute.sh and momlexecute.sh generated by build.xml (v1.366)
do not have the jars in $KEPLER/lib/jar/...
Daniel Crawl
11:12 AM Bug #2933: Query Builder comparisons for strings, dates do not work
This bug is closed and new bug to handle date type in data manager library will be added. Jing Tao
05:57 PM Bug #2933: Query Builder comparisons for strings, dates do not work
Dan tried to string comparison and it works for him. We talked this bug and think to close it in Kepler and add new b... Jing Tao
11:05 AM Bug #3094: File keyboard shortcuts use ctrl key instead of apple key on Mac
I'll work on this for bug day today. Derik Barseghian
05:43 PM Bug #3094: File keyboard shortcuts use ctrl key instead of apple key on Mac
The target design for menu and tool bars is here:
http://kepler-project.org/Wiki.jsp?page=MenuAndToolBarReDesign
He...
Shawn Bowers
05:40 PM Bug #3094 (Resolved): File keyboard shortcuts use ctrl key instead of apple key on Mac
Unlike in View and Edit, File shortcuts use ^Key (ctrl+Key) instead of Apple^Key. These shortcuts include:
* Open...
Shawn Bowers
10:57 AM Bug #3090: ASC2RAWTest demo workflow error
Cleaned up paths and changed the datasource to DirectoryListing. Workflow now executes on multiple platforms Dan Higgins
04:18 PM Bug #3090 (Resolved): ASC2RAWTest demo workflow error
When I try to run this workflow I get the java exception:
Cannot open file or URL in .ASC2RAWTest.Layer List Read...
Shawn Bowers
10:03 AM Bug #3092: sampling_occurrenceData_ R.xml demo workflow
changed file path to use propert("KEPLER") for cross platform comaptibility Dan Higgins
04:49 PM Bug #3092 (Resolved): sampling_occurrenceData_ R.xml demo workflow
This demo workflow does not run properly because a hard-coded path is used for the file. Shawn Bowers
08:46 AM Bug #3095 (New): add data mining actors (weka) and cheminformatics actors
Joseph Maria requested the incorporation of data mining actors based on WEKA and cheminformatics actors based on CDK.... Matt Jones
04:57 PM Bug #3093 (Resolved): Unit test org.nddp.TestCollectionIOPort does not compile
The JUnit test org.nddp.TestCollectionIOPort does not compile, and has been renamed to TestCollectionIOPort.javaDISAB... Timothy McPhillips
04:31 PM Bug #3091 (Resolved): Warnings building org.nddp.DataTypes
Building Kepler yields two warnings with the message, "non-varargs call of varargs method with inexact argument type ... Timothy McPhillips
04:12 PM Bug #3089 (Resolved): Actor port properties lost after saving to library
If I select an actor (e.g., Garp Prediction), add a semantic type to one of its input ports, and save it back to the ... Shawn Bowers

01/22/2008

03:54 PM Bug #3086: Error with kepler20080122.zip version (PTII?)
Problem now fixed with updated PTII Dan Higgins
02:20 PM Bug #3086: Error with kepler20080122.zip version (PTII?)
There was a change in diva.canvas.BasicZList.java (in PTII) on Jan 22 that is the apparent cause.
'throws NoSuchEleme...
Dan Higgins
01:54 PM Bug #3086: Error with kepler20080122.zip version (PTII?)
My bad. I was fixing FindBugs warnings.
Man-kit (Jackie) Leung fixed this in the
Ptolemy II tree.
I just checked in n...
Christopher Brooks
01:43 PM Bug #3086 (Resolved): Error with kepler20080122.zip version (PTII?)
The nightly zipped version (kepler20080122) ends up having a recurring error shown in the terminal when the cursor is... Dan Higgins
03:53 PM Bug #3083: Need sample CommandLine workflows for Windows
Two new example CommandLine workflows added to $KEPLER/demos/getting-started. Dan Higgins
11:29 AM Bug #3083 (Resolved): Need sample CommandLine workflows for Windows
We need some simple examples of how to use the CommandLine actors especially for Windows systems. These should be in ... Dan Higgins
01:28 PM Bug #2493: actor repository tracking bug
the PutService for ecogrid-1.0.0 will include support for filenames. Metacat already handles this, so the download s... ben leinfelder
11:48 AM Bug #2493: actor repository tracking bug
This bug is currently blocked by 3084. Metacat and the grid interfaces need to be updated before this bug can be fix... Chad Berkley
11:59 AM Bug #3077: Querybuilder: condition "operator" and "criteria" are not being saved
This bug is duplicate to bug 3076.
In the OKAction.actionPeformed method in QBApp.java, a TableCellEditor.stopCellEd...
Jing Tao
11:59 AM Bug #3076: Need to hit 'Return" key to enter a Criteria in QueryBuilder
This bug is duplicate to bug 3077.
In the OKAction.actionPeformed method in QBApp.java, a TableCellEditor.stopCellEd...
Jing Tao
11:22 AM Bug #1334: need installer for kepler
Currently, the plan is to use the open source software Izpack and Launch4J for the next Kepler release. (also JarBund... Dan Higgins

01/21/2008

01:32 PM Bug #2490: Get ecogrid endpoints from Ecogrid registry
As part of the upcoming 1.0.0 release [candidate], there are some substantial changes to the SEEK ecogrid and registr... ben leinfelder

01/19/2008

04:08 PM Bug #3078 (Resolved): No documentation for the 'SSH to Execute' actor
No documentation appear for the 'SSH to Execute' actor (org.sdm.spa.Ssh2Exec) Dan Higgins

01/18/2008

01:39 PM Bug #3077: Querybuilder: condition "operator" and "criteria" are not being saved
See bug #3076 Dan Higgins
01:39 PM Bug #3077: Querybuilder: condition "operator" and "criteria" are not being saved
from IRC:
[1:35pm] dan: when you add a criteria, you have to hit 'return'
[1:35pm] dan: just hitting OK won't work
[1...
ben leinfelder
12:12 PM Bug #3077 (Resolved): Querybuilder: condition "operator" and "criteria" are not being saved
When using the Querybuilder interface to construct queries on EML datasource actor, the condition[s] are not being sa... ben leinfelder
12:17 PM Bug #2933: Query Builder comparisons for strings, dates do not work
Although the transformation to the HSQL date format is a change, its probably going to be necessary for many systems.... Matt Jones
10:58 AM Bug #2933: Query Builder comparisons for strings, dates do not work
After changing the double quotes symbol to single quotes for string value in the query, the string comparison works n... Jing Tao
11:59 AM Bug #2940: Querybuilder with EMLDatasource actor does not return data
Ben tried the workflow and it worked for him too. Jing Tao
05:48 PM Bug #2940: Querybuilder with EMLDatasource actor does not return data
This problem wasn't caused by multiple tables or single table. Actually there is a space in attribute name cause the ... Jing Tao
11:25 AM Bug #2987: Kepler Library (actor repository) Issues
1 and 2 are fixed. the other two can be pushed to post 1.0 Chad Berkley
11:21 AM Bug #2978: saving to actor library from kepler no longer consistently works and port information is lost
This is now fixed. It was caused when the actor library was rebuilt after an update. the actorLibrary entity was se... Chad Berkley
10:20 AM Bug #2978: saving to actor library from kepler no longer consistently works and port information is lost
I've verified that dan's way of reproducing this works. Not sure what the issue is. Chad Berkley
11:07 AM Bug #3076 (Resolved): Need to hit 'Return" key to enter a Criteria in QueryBuilder
You must hit the return key to force an entry in the Criteria column of the QueryBuilder. If you just enter the crite... Dan Higgins
10:35 AM Bug #1836: data search and access problems via ecogrid
In 2008 workshop in New Mexico, the ecogrid search worked fine. Dan and I think we can close this bug. Jing Tao

01/17/2008

03:25 PM Bug #2490: Get ecogrid endpoints from Ecogrid registry
My first sentence in comment #1 "...optionally retrieved at startup" is wrong.
I had it occurring at startup for awh...
Derik Barseghian
02:28 PM Bug #2978: saving to actor library from kepler no longer consistently works and port information is lost
Problems can be seen if one follows this sequence:
1) Create a customized RExpression actor called Test1. Add to libr...
Dan Higgins
12:59 PM Bug #3075: Fold Top,java file in $KEPLER/src/exp/ dir into Ptolemy src
There is now a StringAttribute that set the default File|Open directory. So this file should be ready to move to PTII... Dan Higgins
12:10 PM Bug #3020: Exporting an actor to a kar does not include internal jars
When you export an actor to a kar file, it now asks you if you want to include the class file. if so, any associated... Chad Berkley

01/16/2008

03:59 PM Bug #3075 (Resolved): Fold Top,java file in $KEPLER/src/exp/ dir into Ptolemy src
Getting the FILE|Open menu to initially point to the $KEPLER/demos directory required a change to the PTII ptolemy/gu... Dan Higgins
03:58 PM Bug #2935: MetadataSource actor has no documentation
Documentation added to kar file moml Dan Higgins
03:48 PM Bug #3074 (Resolved): Code library installation issues
There are several issues with compiled code libraries (*.dll, *.so, *.dylib files) and where they must be located. Th... Dan Higgins
03:00 PM Bug #3073 (Resolved): Heartbeat function for slaves
When a slave registers itself with the earthgrid registry, there needs to be a way to tell if that slave still exists... Chad Berkley
02:58 PM Bug #3072 (Resolved): Security issues with distributed execution
See bug 3071. basically, the issues are that arbitrary code can be executed on the slaves so the utmost care needs t... Chad Berkley
02:56 PM Bug #3071: KAR files should be sent along with workflow to slaves
kar files should be signed so that the recipient at least can know that they are coming from who they should be. Chad Berkley
02:55 PM Bug #3071 (Resolved): KAR files should be sent along with workflow to slaves
When a master sends the workflow out to the slaves, it should also send any kar files that are needed for execution o... Chad Berkley
02:54 PM Bug #3070 (Resolved): Need access control GUI for slaves
Kepler needs a gui that allows a user to set access control rules for the local slave if it is running via the gui. Chad Berkley
02:53 PM Bug #3069 (Resolved): start slave from gui
A user should be able to start a slave controller from the gui instead of starting it from the command line. The com... Chad Berkley
02:51 PM Bug #3068 (Resolved): rmiregistry should be started programmatically
A user wanting to use the distributed system should not have to start the rmiregistry manually. kepler should start ... Chad Berkley
02:41 PM Bug #2880: Problem with some commands in command line actor
These commands now work using the CommandLineExec actor. Daniel Crawl
02:23 PM Bug #3026: Actor documentation does not appear in older workflows
This has been fixed in many of the GettingStarted demos but not in all the workflows in the demos directory. Dan Higgins
02:21 PM Bug #2914: Broken link on a web page
Note that missing doc is on Ilkay's server Dan Higgins
02:02 PM Bug #2990: file|open dialog should open in workflows directory
File|Open now initially opens into the $KEPLER/demos directory and remembers where the last location was (until shut-... Dan Higgins
01:25 PM Bug #2941: Command Line Exec Actor throws exception when given input on "arguments" port
This has been fixed (as of CommandLineExec.java v1.9) and I've added some workflows to better test this actor. Daniel Crawl
01:22 PM Bug #2531: The link from Kepler intro page to the Ptolemy quick links page is broken
Comment #3 about the Ptolemy links is certainly valid. There is the issue about making sure all the Ptolemy example w... Dan Higgins
01:11 PM Bug #2531: The link from Kepler intro page to the Ptolemy quick links page is broken
BTW - I think Kepler loses something by not having
the Ptolemy demos available. There are plenty of
demos and they ...
Christopher Brooks
12:01 PM Bug #2531: The link from Kepler intro page to the Ptolemy quick links page is broken
The broken link was removed from the intro page. Dan Higgins
10:50 AM Bug #3055: DarwinCoreDatasource actor does not work in wit output 'As Field'
As Field and As Row setting now iterate through all the rows of the data Dan Higgins
07:54 PM Bug #2978: saving to actor library from kepler no longer consistently works and port information is lost
Some preliminary tests indicated that the indicated problems occur when a second actor is added, after the first acto... Dan Higgins
04:43 PM Bug #2978: saving to actor library from kepler no longer consistently works and port information is lost
I'll have to check this out more. We just used this during the training workshop and this functionality worked well.... Chad Berkley
04:41 PM Bug #3066 (New): actor sdk
We need an SDK for building actors so that it is easier for people writing new java actors. the SDK would include a ... Chad Berkley

01/15/2008

02:44 PM Bug #2833: 'Open' problem with new DarwinCoreDataSource actor
Data is now downloaded when actor is first dragged to the work area, allowing access to the query builder Dan Higgins
12:48 PM Bug #3054: Importing a kar file claims actor is already cached
This is now fixed. Chad Berkley
 

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