Activity
From 12/09/2009 to 01/07/2010
01/07/2010
- 08:12 PM Bug #4311: Build system appears to lock if there is a conflict upon update
- Are you saying that when the update failed to complete, it did not say why? That is unusual. Can you reproduce this e...
- 07:57 PM Bug #4311: Build system appears to lock if there is a conflict upon update
- I'm not so sure it's a good idea to ignore this. This happened to Mark, Regetz, and me. None of us had made any loc...
- 07:24 PM Bug #4311: Build system appears to lock if there is a conflict upon update
- The solution to this problem is not in the build system. You should do the update manually if you have made changes.
- 07:59 PM Bug #4388: remove the ptII module
- There is no good way to remove the ptII suite without changes to the ptolemy module. This is not currently in the car...
- 07:52 PM Bug #4281: ant update produces message about running svn cleanup
- I agree that this bug should be closed. "ant update" is a convenience method which allows one to avoid having to run ...
- 07:47 PM Bug #4280: ant task fails under Windows
- Again, "ant task" is a convenience short cut for:
ant -f kepler-tasks.xml
Therefore, I do not intend on devoting an... - 07:44 PM Bug #4264: ant task fails if there are java compilation errors
- "ant task" is a convenience method. It never needs to be invoked.
If "ant task" fails, the solution is to type:
ant... - 07:40 PM Bug #4260: Add a test suite for the build system
- I think this is overkill and not a good use of resources. Problems in the build system tend to be detected immediatel...
- 07:22 PM Bug #4108: Do more extenstive testing before designating a revision of Ptolemy as stable
- Additional testing before designating a version of Ptolemy as "stable" is unnecessary. Closing this bug.
- 07:21 PM Bug #4202: typos in modules.txt are ignored
- The contents of modules.txt is now verified. Missing/mispelled modules now cause an error message to appear.
- 07:18 PM Bug #4353: Update publishing to allow for patches.
- This is now implemented.
- 07:14 PM Bug #4351: ant netbans fails due to missing file
- This bug no longer occurs.
- 07:12 PM Bug #4286: Changes to the GUI before 2.0
- There are only minor changes left before 2.0. This bug is no longer needed.
- 07:03 PM Bug #4082: New user guide section on modules/module manager
- Please assign bugs to welker4kepler@gmail.com when assigning bugs to me only.
I have documented module manager funct... - 07:00 PM Bug #4382: Remove switching between kepler and ptolemy
- It is no longer possible to launch Ptolemy from the Kepler module manager. This reinforces the separateness of the tw...
- 06:58 PM Bug #4650: module manager tries to download already downloaded modules
- Modules that are retrieved are not removed from the available modules pane. Instead, they are added to the "Downloade...
- 11:20 AM Bug #4650 (Resolved): module manager tries to download already downloaded modules
- After downloading a module, that module should be removed from the "available modules" list. If a user tries to down...
- 06:23 PM Bug #4655 (Resolved): data packages are suddenly unusable
- For some reason, EML 2 Dataset actors are not outputting any tokens for most output formats. The data exists at .kep...
- 06:09 PM Bug #4654: searching KNB through Kepler returns many console errors and caching fails
- It's looking like I managed to completely screw up my cache. A clean-cache fixed things.
Basically, I was signing i... - 05:44 PM Bug #4654 (Resolved): searching KNB through Kepler returns many console errors and caching fails
- This is at r22407 under linux. Things seem to work, but the cache content is all blank (files are all of size 0).
- 05:13 PM Bug #4653 (Resolved): error message says "data cloumn"
- The data cloumn didn't match head column
- 04:55 PM Bug #4652 (Resolved): clicking rows in the wrm no longer updates the report designer/viewer
- If I have multiple entries in the wrm and I click on different rows, the report designer and viewer no longer automat...
- 10:01 AM Bug #4516: Module Manager needs ability to install modules needed by KARs
- I've now split the module manager into two modules. module-manager now has basic classes for downloading modules. m...
01/06/2010
- 11:36 AM Bug #4161: Develop kepler workflow execution engine
- installed on my local system - did a roundtrip:
-upload workflow+report
-schedule
-wait
-view PDF report when complet...
01/05/2010
- 04:08 PM Bug #4161: Develop kepler workflow execution engine
- stylesheet issue on the Metacat side of things -- now fixed.
- 11:40 AM Bug #4161: Develop kepler workflow execution engine
- script-based execution still works. There's a slight problem on the Metacat side for the first MOML DTD...but that's ...
- 03:09 PM Bug #4648 (Resolved): Create classes to find and display any available documentation for installed modules or suites.
- Create classes to find and display the available documentation for installed modules or suites.
- 03:06 PM Bug #4647 (Resolved): Write documentation for Reporting in the style of Kepler Docs
- Write the user documentation for the WRP suite, using the same style as the rest of the Kepler documentation.
- 11:31 AM Bug #4538: problems with KARs that contain tags from default ontologies
- (In reply to comment #2)
> this looks wrong:
> <property name="semanticType" class="org.kepler.sms.SemanticType"
> va... - 10:09 AM Bug #4538: problems with KARs that contain tags from default ontologies
- this looks wrong:
<property name="semanticType" class="org.kepler.sms.SemanticType"
value="urn:lsid:lsid.ecoinformati... - 10:05 AM Bug #4453: tags don't show up in snow leopard (10.6)
- this is working for me on snow leopard
- 10:04 AM Bug #4480: can't view more than one of workflow editor, report designer, and report viewer at a time
- retargeting to post-2/wrp
- 09:43 AM Bug #4618: First export of a run doesn't yield KAR with ROML
- in the name of upcoming code freeze, I'm thinking this can be closed.
01/04/2010
- 02:47 PM Bug #4516: Module Manager needs ability to install modules needed by KARs
- I added a karEntryHandler for modules.txt files. I'm going to add a method to the module manager sot hat the entryHa...
01/03/2010
- 12:26 PM Bug #4547: documentation for file parameter includes an error
- Viewing the documentation for FileParameter works fine in the ptII tree,
but fails in Kepler, probably because of som...
12/29/2009
- 11:45 AM Bug #4603: Make limited changes to tagging in preparation for initial release
- Fixed as of r22287.
- 07:59 AM Bug #4547: documentation for file parameter includes an error
- Parsing the description is throwing an error - perhaps it's trying to substitute values or $ID?
Snippet from the File...
12/27/2009
- 11:14 AM Bug #4547: documentation for file parameter includes an error
- also in StringParameter.
It's not in the actor moml...so it must be in the action that is displaying the documentation - 11:10 AM Bug #4522: Folder not found in library index
- just tried this (r22284) and it seems to be working.
- 10:48 AM Bug #4439: reporting displays output for a different actor
- More testing makes this look related to provenace:
I create a simple [runnable] workflow so that I can execute it to ... - 09:51 AM Bug #4618: First export of a run doesn't yield KAR with ROML
- Would you just bump the run revision (entityId)? But then wouldn't that mean it's a different "run" rather than the s...
- 09:23 AM Bug #4171: dragging actor to canvas then back to component tree area gives NPE
- er, close
- 09:23 AM Bug #4171: dragging actor to canvas then back to component tree area gives NPE
- removed PTree override in reporting. all better now!
- 08:56 AM Bug #4171: dragging actor to canvas then back to component tree area gives NPE
- there's a PTree override in the reporting module...but I don't see it being referenced in that module. Looking into r...
12/24/2009
- 01:27 PM Bug #4467: WRP - restarting/reopening Kepler throws error
- I'm closing this since I can't ever get it to happen for me and there's been so much change since it was entered that...
- 01:23 PM Bug #4534: add extra space before section headers when BREAK_BEFORE is false
- added some padding above the section header text
- 01:16 PM Bug #4480: can't view more than one of workflow editor, report designer, and report viewer at a time
- we've changed it a bit: two views - the "reporting" view has 2 tabs: layout and instance. but you do still have to sw...
- 01:13 PM Bug #4614: right click -> Open on an existing run adds an entry to the wrm
- i don't see this happening in my build as of today (12-24-2009)
- 01:09 PM Bug #4600: Changing workflow & running causes "execution history not found" message to appear in report viewer
- I've not gotten this error. I had seen the blank report error from before.
With the latest fix, this should not be ha... - 01:07 PM Bug #4599: changing Expression and running problematic workflow generates blank report
- okay - now when the LSID is changed, the layout manager listens for the change event and reassociates the layout with...
- 11:13 AM Bug #4638: ant clean-all no longer works
- just tried it at r22278 and it works
12/18/2009
- 07:45 PM Bug #4642 (New): memory usage & slowdowns
- I just hit a big slowdown caused by OOM problems. This bug is mostly a place to put down some of the stuff I found o...
- 03:18 PM Bug #4639 (New): add support for -Drev to ant change-to
- Doesn't happen very often, but I often am not checking out the head revision, and so it would be nice if ant change-t...
- 01:54 PM Bug #4630: creating and changing relations don't trigger LSID bump
- For now I've allowed manually bumping the LSID revision and Object ID from the LSID Viewer panel so there's at least ...
- 12:19 PM Bug #4599: changing Expression and running problematic workflow generates blank report
- Until this gets fixed, a workaround is to give the workflow an LSID from the local Kepler install. Basically, delete...
- 12:09 PM Bug #4632: problems when loading a KAR, changing the workflow, then re-saving the KAR
- This actually looks great right now. It seems to clear all the test cases.
- 11:34 AM Bug #4638: ant clean-all no longer works
- It works at r22253.
- 11:33 AM Bug #4638 (Resolved): ant clean-all no longer works
- This is with modules\build-area at r22254. ant clean-all and ant clean-cache both fail:
build-area\build.xml:4: ...
12/17/2009
- 08:01 PM Bug #4633: LSID conflicts
- The logic for querying a new namespace from an Authority in the event that the recorded object IDs and revisions have...
- 06:47 PM Bug #4514: Files are being saved in the Kepler installation directory
- InstanceAuthNamespace now gets saved into the persistent Kepler core module directory. LastObjectID file is no longe...
12/16/2009
- 11:09 AM Bug #4619: WorkflowRuns not showing inside KARs in library
- r22211 fixes problem in comment#5.
- 10:57 AM Bug #4630: creating and changing relations don't trigger LSID bump
- retargeting to 2.0
- 10:40 AM Bug #4571: report "lost" from KAR
- Tried to "loose" the ROML - it just won't go away! Closing...
12/15/2009
- 07:32 PM Bug #4633: LSID conflicts
- LSIDGeneration and LSID Revision updates are now being recorded. The LSID_GENERATOR table still needs to be moved to...
- 03:25 PM Bug #4578: tracking bug for changes to .kepler
- I have removed the use of the AuthNamespace from the .kepler directory structure.
The cache directory is now
~/.kep... - 12:15 PM Bug #4587: Assure a clean cache when module configuration changes
- I'll work on getting this working.
- 11:45 AM Bug #4338: need to review usability and gui of module manager
- I tried the MM again from a clean build. I was able to change-to the kepler-1.0.0 suite, however there are some prob...
- 08:49 AM Bug #4473: Add WRM to bottom of report viewer for navigation
- I'm really liking this the more I interact with it.
I even like how you can "open" a row in a new window if you do wa... - 08:47 AM Bug #4468: Report Viewer - message to run workflow first
- Since we're not refreshing the viewer when you switch views (now a tab) the only time it comes up is when you use the...
12/14/2009
- 11:21 PM Bug #4632: problems when loading a KAR, changing the workflow, then re-saving the KAR
- I've at least addressed some of this in r22198.
I concentrated on editing wf/layout->saving kar->editing->saving.... ... - 07:44 PM Bug #4632: problems when loading a KAR, changing the workflow, then re-saving the KAR
- I think I can hopefully clarify the example and maybe help show why this is incredibly confusing:
1. New workflow, ... - 05:46 PM Bug #4632: problems when loading a KAR, changing the workflow, then re-saving the KAR
- I should also point out that bug 4571 shows up in cases 4 and 5.
4. Saved KAR, Change MOML, File->Save Archive, clos... - 04:50 PM Bug #4632: problems when loading a KAR, changing the workflow, then re-saving the KAR
- This is observed on both r22183 and r22155. Still trying to find a build that won't lose my data...
- 03:51 PM Bug #4632: problems when loading a KAR, changing the workflow, then re-saving the KAR
- Regarding the part about the ROML being lost (second described symptom), it reminds me a lot of bug 4592, but I think...
- 03:07 PM Bug #4632 (Resolved): problems when loading a KAR, changing the workflow, then re-saving the KAR
- Create a workflow and report and save the KAR. Next, change the workflow (i.e., bump the MOML LSID), save the KAR (o...
- 11:18 PM Bug #4571: report "lost" from KAR
- I believe r22198 will eliminate this problem. You should be able to open different KARs with different versions of th...
- 08:37 PM Bug #4630: creating and changing relations don't trigger LSID bump
- Creating relations also does not trigger an LSID bump. For some reason, deleting them does.
- 02:28 PM Bug #4630 (Resolved): creating and changing relations don't trigger LSID bump
- Make a workflow with at least 3 ports and only 2 connected. Check the LSID. Now move a relation from one port to an...
- 08:33 PM Bug #4633: LSID conflicts
- This still seems to occur if I'm not using local repositories.
The crux of the problem is nobody is tracking used re... - 06:09 PM Bug #4633: LSID conflicts
- Fixed, lsid updating now recognizes if it is the highest revision in the cache or not. If it isn't then it becomes o...
- 05:04 PM Bug #4633 (Resolved): LSID conflicts
- Create a workflow and save a KAR (KAR1). Note the LSID. Change the workflow in some recognizable fashion and save a...
- 08:19 PM Bug #4634 (Resolved): run archive causes NPE when building local repository
- Start Kepler from a clean-cache. I'm at r22183. Move the example to the default workflows folder and re"Build" the ...
- 07:38 PM Bug #4563: components search seems to be broken
- This no longer seems to occur.
- 07:29 PM Bug #4596: selecting text entry box of report item moves activation highlight but does not update properties window
- I think this got fixed, but never re-closed.
- 06:40 PM Bug #4619: WorkflowRuns not showing inside KARs in library
- r22184 has re-broken this. KARFile now warns:
WARN (org.kepler.kar.KARFile:cache:838) KAREntry was not recognized: W... - 05:57 PM Bug #4615: pdfs missing from run archives
- This got fixed somewhere along the line (before r22183).
- 05:41 PM Bug #4473: Add WRM to bottom of report viewer for navigation
- WRM has been moved to the Report Designer view, which now contains the report designer and the instance viewer in dif...
- 05:35 PM Bug #4505: NPE from Semantic Search
- The error has changed to:
java.lang.ClassCastException: org.kepler.objectmanager.cache.ReportLayoutCacheObject
at o... - 05:32 PM Bug #4607: Workflow Run Manager - opening kar no longer adds run-row
- This has been fixed.
- 05:32 PM Bug #4590: Workflow Run Manager - Export Archive can give error
- This was fixed awhile ago.
- 03:59 PM Bug #4605: Semantic Annotation NPE
- Turns out it was just unable to find the icon, which was crashing the whole thing (not good). Fixed now.
- 03:01 PM Bug #4605: Semantic Annotation NPE
- Somehow OntoClassSelectionJPanel is not in the classpath at runtime... It gets used from ActorSemanticTypeEditorPane...
- 03:58 PM Bug #4538: problems with KARs that contain tags from default ontologies
- The problem in comment #1 was fixed some time ago.
Things seem to be working fine, but I notice the way the tags are... - 03:10 PM Bug #4338: need to review usability and gui of module manager
- turns out it changed my modules.txt to this:
berkley@Slickrock build-area$ more modules.txt
ssh-1.0.0 - 03:10 PM Bug #4338: need to review usability and gui of module manager
- I've reviewed the module manager and these are the things I've noticed:
* the window opens too small on OSX. It sho... - 02:40 PM Bug #4631 (Resolved): Could use some way to change the "workflow name" stored in a KAR
- Right now, if I want to change the "workflow name", I would have to export the MOML and recreate the report. It woul...
- 01:48 PM Bug #4629 (Resolved): Undo doesn't roll LSID revision
- When undoing changes in a workflow the LSID of the workflow does not get incremented.
- 01:48 PM Bug #4599: changing Expression and running problematic workflow generates blank report
- Still happening at r22183. There might be more to it than the provenance recorder?
- 01:24 PM Bug #4468: Report Viewer - message to run workflow first
- I think this got killed with some recent commit. I'm at r22183.
- 01:22 PM Bug #4569: viewing report before executing sometimes generates persistent blank report
- This seems to have been "fixed" somewhere along the way. At the very least, it's not showing up at r22183. I'm not ...
12/11/2009
- 08:49 AM Bug #4619: WorkflowRuns not showing inside KARs in library
- While unit tests would probably minimize this wheel spinning, I think it's non-trivial to develop them. Most of the i...
12/10/2009
- 10:27 PM Bug #4619: WorkflowRuns not showing inside KARs in library
- Derik -- it sounds to me like you need to develop a set of unit tests that exercise this functionality, in this case ...
- 07:08 PM Bug #4619: WorkflowRuns not showing inside KARs in library
- partially fixed in r22162. You can now export the same run to different kars, and the run momls will show up in the t...
- 06:30 PM Bug #4626: NPE when saying "yes" to adding a semantic type while saving a KAR
- duplicate of 4605, although it looks like the error msg may have changed since I reported.
- 06:27 PM Bug #4626 (Resolved): NPE when saying "yes" to adding a semantic type while saving a KAR
- I'm at r22155. File->Save Archive (KAR) and answer yes to adding a semantic type. I'm getting an NPE.
Exception ...
12/09/2009
- 07:12 PM Bug #4619: WorkflowRuns not showing inside KARs in library
- Leaving off here for now: problem is related to fact that insertEntryIntoCache fails when trying to insert WorkflowRu...
- 06:21 PM Bug #4619 (Resolved): WorkflowRuns not showing inside KARs in library
- WorkflowsRuns that are inside kars haven't been showing up in the component library for awhile now beneath an expande...
- 06:16 PM Bug #4618: First export of a run doesn't yield KAR with ROML
- r22150 should fix this, but I want to test it a bit more.
One oddity currently is that if you export a run, export it... - 03:44 PM Bug #4618 (Resolved): First export of a run doesn't yield KAR with ROML
- I've introduce a bug in r22148:
For the case where no report is made: the first export of a run doesn't put a ROML... - 03:45 PM Bug #4614: right click -> Open on an existing run adds an entry to the wrm
- r22148 should fix this. I want to test it a bit more before closing though.
Also, I've changed the duration column b...
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