Activity
From 01/17/2013 to 02/15/2013
02/15/2013
- 10:30 AM Bug #5868: Some weird behavior when morpho deletes a network data package with data file
- The problem is there is no null check for the id. If an id is null, the anotherId.equal(id) will have NullPointerExce...
02/14/2013
- 10:44 PM Bug #5867: Make CILogon/ECP settings configurable
- I actually can't imagine a normal user editing these cryptic ECP urls. Advanced users can switch to a testing environ...
- 02:28 PM Bug #5867: Make CILogon/ECP settings configurable
- I've added these to the config.xml file, but not yet in the advanced tab.
- 09:03 AM Bug #5867 (Resolved): Make CILogon/ECP settings configurable
- In the advanced tab, we should allow editing of:
-Identity Service Provider URL (CILogon)
-CILogon skin
-List of a... - 10:41 PM Bug #5864: ECP login causes new DN so user's can't see their data
- This is resolved in the sense that Morpho has been updated to search for packages that are owned by any of the equiva...
- 04:00 PM Bug #4816: reloading unfinished New Data Package ???
- This bug was fixed.
- 03:58 PM Bug #5866: Needs correct behavior for saving both when the saving network fails
- During the saving both process, the exceptions for local saving and network saving is caught separately. Morpho can s...
- 03:54 PM Bug #5861: Local delete doesn't delete the file storing the system metadata
- Now morpho will delete both the metadata (including the associated system metadata) and the ore document(including th...
- 02:22 PM Bug #5861: Local delete doesn't delete the file storing the system metadata
- yeah. we should keep the data file. Actually, the delete doesn't remove the data file.
However, I think we should re... - 02:47 PM Bug #5868 (Resolved): Some weird behavior when morpho deletes a network data package with data file
- Here are the steps to produce the issue:
1. Use the new data package wizard and entity wizard to generate a data pac... - 09:33 AM Bug #5859: Resource map contains previous data file version
- Basically, the action should update the metadata map in DataPackage was replaced by the add. So there were current an...
02/13/2013
- 05:12 PM Bug #5866 (Resolved): Needs correct behavior for saving both when the saving network fails
- When we choose to save a data package to the both location, the result of saving is the unsaved morpho frame (the fra...
- 12:32 PM Bug #5864: ECP login causes new DN so user's can't see their data
- I've now included the equivalent identities (listed in the CILogon certs that contain SubjectInfo) as additional <own...
02/12/2013
- 10:42 PM Bug #5861: Local delete doesn't delete the file storing the system metadata
- I think it's safe to remove the SystemMetadata file as well. We should not, however, delete any referenced data files...
- 06:15 PM Bug #5861 (Resolved): Local delete doesn't delete the file storing the system metadata
- The delete of local data package does delete the package itself. But it doesn't delete the stored system metadata file.
- 10:40 PM Bug #5862: update Readme to refer to DataONE
- Updated readme to include DataONE but still keep an emphasis on the KNB as default member node.
- 06:15 PM Bug #5862 (Resolved): update Readme to refer to DataONE
- The current Readme file that is displayed in the installer references uploading data to the KNB, but does not acknowl...
- 10:26 PM Bug #5864: ECP login causes new DN so user's can't see their data
- On #1, yes, we are using a different account. I could have set up the test KNB IdP to use the o=NCEAS tree but I used...
- 06:25 PM Bug #5864 (Resolved): ECP login causes new DN so user's can't see their data
- Logging into the new version of Morpho using ECP has two negative side effects that need to be resolved.
1) The EC... - 06:20 PM Bug #5863 (Resolved): After deleting the newest version of a package locally, the search and open don't show the previous version
- Here are steps:
1. create a data package and save it.
2. update the title and save it again.
3. delete the packa... - 06:07 PM Bug #5801: Test Morpho against GMN
- There is no any particular issue for the the GMN. So i close it.
- 06:05 PM Bug #5860: When morpho saves a network data package to local, the system metadata may contain id (obsoletes) which doesn't exist
- Since the other way - saving locally first then saving both, works, we move this bug to 2.1
- 03:45 PM Bug #5860: When morpho saves a network data package to local, the system metadata may contain id (obsoletes) which doesn't exist
- This is tricky. I know we decided a while back that we should manage the revision history separately for local vs. ne...
- 04:57 PM Bug #5848: Ensure Morpho can edit EML contributed by DataUp
- Basic open operation works, but as noted in the comments, editing these packages will be tricky since Morpho expects ...
- 04:55 PM Bug #5856: Morpho says that the network access policy has been set successfully, but actually it didn't
- The boolean operation when calling local vs. network was short circuiting when it was network-only and not even calli...
- 04:32 PM Bug #5856: Morpho says that the network access policy has been set successfully, but actually it didn't
- I just created a package by the new data package wizard and saved it to the network. Then I added a new rule and it s...
- 03:58 PM Bug #5856: Morpho says that the network access policy has been set successfully, but actually it didn't
- I tried this with the same set-up you describe, but get an error message about the object not being on the CN (as exp...
- 03:47 PM Bug #5859: Resource map contains previous data file version
- Is this just a problem with the code that "updates" the identifier of data.1 to data.2 not properly removing the orig...
- 03:40 PM Bug #5858: Does the system metadata need the obsoletedBy element?
- It is probably a good idea to set them both, but I am not sure it is required locally. On the MN we do set the obsole...
- 11:13 AM Bug #5857: A package just created by the new package wizard has an obsoletes element in the system metadata
- Add code to check if the obsoleted id exists. If the id exists, morpho will set up the obsoletes element in the syste...
02/11/2013
- 11:17 PM Bug #5860 (Resolved): When morpho saves a network data package to local, the system metadata may contain id (obsoletes) which doesn't exist
- Here are the steps to produce the bug:
1. Create a data package with data object and save it to the network. It cont... - 10:26 PM Bug #5859 (Resolved): Resource map contains previous data file version
- Here are steps to produce the bug:
1. Use the new data package and entity wizards to create a data package foo.1 and... - 09:36 PM Bug #5858 (Resolved): Does the system metadata need the obsoletedBy element?
- I created data package foo.1 and saved it locally. Then I modified the data package and saved it foo.2. The system me...
- 09:20 PM Bug #5857 (Resolved): A package just created by the new package wizard has an obsoletes element in the system metadata
- I just created a data package by using the new data package wizard. When I checked the system metadata, it has a obso...
- 05:31 PM Bug #5856: Morpho says that the network access policy has been set successfully, but actually it didn't
- Good question. I checked the access policy on the MN. I just checked the cn. The data package identifier doesn't exis...
- 05:13 PM Bug #5856: Morpho says that the network access policy has been set successfully, but actually it didn't
- Are you checking the access rules on the CN or the MN? Updates to the access policy are made to the CN for packages t...
- 05:04 PM Bug #5856 (Resolved): Morpho says that the network access policy has been set successfully, but actually it didn't
- I opened a network data package(network only) and add a new rule from the Documentation|Access Information menu.
T... - 05:19 PM Bug #5855: The online copy doesn't show the last update
- The problem was that the assignment of the new id was driven by if the identifier existed in the target location. If ...
- 04:58 PM Bug #5854: Include Replication Policy screen in the NDP wizard sequence
- Need to figure out an elegant way to include SM information in the wizard workflow. Access rules fit in the EML file,...
02/08/2013
- 04:13 PM Bug #5855: The online copy doesn't show the last update
- I also tried to modify a package with a data object.
1. Use the new data package wizard and entity wizard to create a... - 02:19 PM Bug #5855 (Resolved): The online copy doesn't show the last update
- Here are the steps to produce the bug:
1. Create a new data package and save it locally.
2. Update the title and sa... - 11:54 AM Bug #5852: Allow a mix of MN URL and MN Node Name values in the preferences screen
- Now displaying the Node Name in the selection list. You can type the Node Base URL if your MN is not registered with ...
- 11:29 AM Bug #5851: Move CN URL configuration to an "advanced" tab in the preferences window
- Now we have a "General" and an "Advanced" tab
02/07/2013
- 04:50 PM Bug #5796: D1Object in Morpho still uses byte array as data source
- Now we use DataSource for D1Object to replace the byte[]
02/06/2013
- 04:59 PM Bug #5849: Remove 'Allow First' radio button from access control page
- Remove the panel.
- 04:24 PM Bug #5849: Remove 'Allow First' radio button from access control page
- I think it can be removed from the screen completely. In DataONE there is no notion of a "permission order" and we do...
- 04:12 PM Bug #5849: Remove 'Allow First' radio button from access control page
- Do we still need to indicate user that it is allowFirst somehow? I am thinking instead to remove the permission order...
- 04:09 PM Bug #5853: Disable 'Allow' permission combobox on access control page
- I used a label "Allow" to replace the dropdown list.
02/05/2013
- 10:46 PM Bug #5854 (Resolved): Include Replication Policy screen in the NDP wizard sequence
- When I was updating the user guide, I added the Replication Policy instructions to the new datapackage wizard section...
- 10:41 PM Bug #5853 (Resolved): Disable 'Allow' permission combobox on access control page
- Because we removed "Deny" rules from access control policies for DataONE we are left with a dropdown with only "Allow...
- 10:19 PM Bug #5848: Ensure Morpho can edit EML contributed by DataUp
- After overcoming the error message about the missing physical entity information I was able to open the package in Mo...
- 05:31 PM Bug #5848 (New): Ensure Morpho can edit EML contributed by DataUp
- Tried to open network EML 2.1.1 contributed by DataUp tool:
https://oneshare.unm.edu/knb/d1/mn/object/ark:/90135/q13... - 09:31 PM Bug #5852 (Resolved): Allow a mix of MN URL and MN Node Name values in the preferences screen
- I think we can be more clever with mixing and matching the selection combobox with MNodeSelectionObjects (listed from...
- 09:25 PM Bug #5851 (Resolved): Move CN URL configuration to an "advanced" tab in the preferences window
- While it is very useful for us (and I bet others) for testing, the CN URL is the first option in the preferences pane...
- 09:22 PM Bug #5850 (Resolved): Reduce amount of 'help' text on replication policy page
- I think I mostly copied the DataONE documentation regarding ReplicationPolicy - could stand some whittling down.
- 09:18 PM Bug #5849 (Resolved): Remove 'Allow First' radio button from access control page
- The permission order section should be removed. There is only a single option now.
02/04/2013
- 05:50 PM Bug #5807: Update LaTEX user guide to reflect new 2.0 changes
- First pass is done. We could probably expand on the "what's new in 2.0" section or even add a whole DataONE chapter. ...
- 03:59 PM Bug #5847 (New): Morpho says that it will save the eml as eml 2.1.1, but it saved still as 2.0.1
- You can reproduce the bug:
1. Open a network copy of the eml 2.0.1, click no when you are asked to upgrade the eml t... - 02:35 PM Bug #5846: Morpho says that it saved an eml 2.0.1 document, but it is eml 2.1.1
- Oh, I misunderstood when I first read this.
Yes, you should be able to copy an old EML 2.0.1 file from the network t... - 02:32 PM Bug #5846: Morpho says that it saved an eml 2.0.1 document, but it is eml 2.1.1
- Hrrm, I couldn't reproduce the bug any more. I opened an eml 2.0.1 on the network location without any modification, ...
- 01:06 PM Bug #5846: Morpho says that it saved an eml 2.0.1 document, but it is eml 2.1.1
- Since Morpho only ever "knows" how to save the current version of EML, we should not allow users to save the package ...
- 12:05 PM Bug #5846 (Resolved): Morpho says that it saved an eml 2.0.1 document, but it is eml 2.1.1
- I found if use want to save an old version locally, actually the saving upgraded the eml version.
1. Open a online... - 12:00 PM Bug #5843: Failed to open the data package - https://mn-demo-5.test.dataone.org/knb/d1/mn/v1/object/doi:10.6085/AA/YBHX00_XXXITBDXMMR01_20040720.50.5
- After update the eml to the newest version, morpho assigns a new uuid for the package. Now you can update and save th...
02/02/2013
- 02:23 PM Bug #5845: illegible fonts when remoting via X
- Note that I also tried scp-ing my local linux morpho-1.10.0 to the cluster. When I run that (again, remotely, and X-f...
- 02:17 PM Bug #5845 (New): illegible fonts when remoting via X
- I have a ~1.1-GB dataset on a cluster on which I work. I have morpho-1.10.0-linux on my debian laptop, which works fi...
02/01/2013
- 11:08 PM Bug #5843: Failed to open the data package - https://mn-demo-5.test.dataone.org/knb/d1/mn/v1/object/doi:10.6085/AA/YBHX00_XXXITBDXMMR01_20040720.50.5
- I agree that transforming the EML from one version to another is an "update" and therefore requires a new identifier ...
- 09:33 PM Bug #5843: Failed to open the data package - https://mn-demo-5.test.dataone.org/knb/d1/mn/v1/object/doi:10.6085/AA/YBHX00_XXXITBDXMMR01_20040720.50.5
- As I suspected: during the version transformation, the original identifier (doi:10.6085/AA/YBHX00_XXXITBDXMMR01_20040...
- 06:12 PM Bug #5843: Failed to open the data package - https://mn-demo-5.test.dataone.org/knb/d1/mn/v1/object/doi:10.6085/AA/YBHX00_XXXITBDXMMR01_20040720.50.5
- A good news: i can use the open id menu item to open a package with a DOI id.
- 05:42 PM Bug #5843: Failed to open the data package - https://mn-demo-5.test.dataone.org/knb/d1/mn/v1/object/doi:10.6085/AA/YBHX00_XXXITBDXMMR01_20040720.50.5
- Sorry, it is my fault. After transform to the new verion (eml 2.1) document, the main morpho frame shows: DataPackage...
- 05:22 PM Bug #5843: Failed to open the data package - https://mn-demo-5.test.dataone.org/knb/d1/mn/v1/object/doi:10.6085/AA/YBHX00_XXXITBDXMMR01_20040720.50.5
- The ID was not changed -- that is the data entity ID originally used in PISCO and encoded in the ecogrid url:
<url fu... - 05:08 PM Bug #5843: Failed to open the data package - https://mn-demo-5.test.dataone.org/knb/d1/mn/v1/object/doi:10.6085/AA/YBHX00_XXXITBDXMMR01_20040720.50.5
- I added code to handle the failure of one entity downloading gracefully and can save it locally.
However, the id was... - 04:15 PM Bug #5843: Failed to open the data package - https://mn-demo-5.test.dataone.org/knb/d1/mn/v1/object/doi:10.6085/AA/YBHX00_XXXITBDXMMR01_20040720.50.5
- It seems that the failure of one entity downloading causes the failure of the open. We should still open a package ev...
- 04:13 PM Bug #5843: Failed to open the data package - https://mn-demo-5.test.dataone.org/knb/d1/mn/v1/object/doi:10.6085/AA/YBHX00_XXXITBDXMMR01_20040720.50.5
- the error message is:
[java] Could not read package: No system metadata could be found for given PID: YBHX00_XXXI... - 03:53 PM Bug #5843 (Resolved): Failed to open the data package - https://mn-demo-5.test.dataone.org/knb/d1/mn/v1/object/doi:10.6085/AA/YBHX00_XXXITBDXMMR01_20040720.50.5
- When I search "PISCO" and get the data package:
https://mn-demo-5.test.dataone.org/knb/d1/mn/v1/object/doi:10.6085/A... - 05:04 PM Bug #5844: Error during Open By Id prevents Morpho from responding to input
- This can be fixed by removing the MorphoFrame parent reference in the Log class where we display the warning/error me...
- 05:01 PM Bug #5844 (Resolved): Error during Open By Id prevents Morpho from responding to input
- Here is the scenario (and I believe it has to do with window management):
1. File->open by id...
2. select "Network... - 04:33 PM Bug #5826: Show identifier conflict prompt when conflict is detected
- I am moving this to 2.1.0. I still can't think of a reason to show the conflict resolution window until we are in a p...
- 03:39 PM Bug #5800: Search support should degrade gracefully when MN.query is not supported
- now disabling network search when the MN does not support our newer pathquery variant via the MNQuery interface. This...
- 02:34 PM Bug #5801: Test Morpho against GMN
- After we started to use UUID, we assign a UUID to the package when we start to use the new data package wizard. Befor...
- 10:07 AM Bug #5801: Test Morpho against GMN
- The file size not-match issue for the eml comes back again. Ben, did you change something? I will take a look.
- 02:02 PM Bug #5803: Tag a release of ECP client code
- I tagged "0.0.2" in Github:
https://github.com/leinfelder/simple-ecp-client/tree/simple-ecp-client-0.0.2
Set up a st... - 11:51 AM Bug #5841: During the startup, don't give a message which indicate the peer not be authenticated.
- Now getting rid of the client certificate if it is expired.
- 10:19 AM Bug #5841: During the startup, don't give a message which indicate the peer not be authenticated.
- I wonder if we should delete the expired client certificate so that calls are made as public rather than just failing...
- 10:02 AM Bug #5841: During the startup, don't give a message which indicate the peer not be authenticated.
- Removed the setLastID() call because we are using UUIDs and have no need to check the server for the next available s...
- 09:47 AM Bug #5841: During the startup, don't give a message which indicate the peer not be authenticated.
- I was going to remove this call since we are using UUIDs locally and have no need to call the server to check if the ...
- 09:45 AM Bug #5841 (Resolved): During the startup, don't give a message which indicate the peer not be authenticated.
- When we start morpho, if there is no valid certificate, morpho will show a warning message twice: Peer not be authent...
- 10:59 AM Bug #5842 (New): the .data.properties file has some odd entries
- Today, i saw some odd entries in the profile/tao/data/.data.proerties:
.systemmetadata.Morpho-1515043114261139655=.s...
01/31/2013
- 06:19 PM Bug #5788: It is confusing that the "Save Dialog" comes back again when a user clicks okay in the id collision dialog
- Going to leave this as is. The collision window is currently not being display (see related bug #5826) and we don't e...
- 06:17 PM Bug #5808: Evaluate "Synchronize" feature for potential removal
- Well, this feature still works fine but is slightly redundant with the save feature. Leaving it alone.
- 05:44 PM Bug #5802: Use UUID for local identifiers
- Now using UUID across the board. GMN uses this exclusively for its generateIdentifier method and Metacat 2.0.6 will s...
- 05:30 PM Bug #5801: Test Morpho against GMN
- I add code to calculate the data file size and checksum in the DataViewer class. Now, the saving passed the issue of ...
- 04:59 PM Bug #5801: Test Morpho against GMN
- I created a data package with an entity by the new data package and entity wizards. Then saved it to the network.
I... - 03:34 PM Bug #5801: Test Morpho against GMN
- I have changed Morpho to call MN.generateIdentifier() with the UUID scheme as the default so it should work with GMN....
- 03:11 PM Bug #5801: Test Morpho against GMN
- Jing: it is sort of working
benMac: what was the issue?
Jing: i can insert an eml and eml with an entity.
Jing: but w... - 05:18 PM Bug #5798: ORE documents generated by Morpho do not include obsolescence chain
- now doing this identifier-based ORE revision tracking. It's not really how we want to do it, but it will owrk for the...
- 04:28 PM Bug #5803: Tag a release of ECP client code
- The ECP client depends on shibboleth openSAML libraries that are at 3.0-SNAPSHOT. They have not released 3.0.0 yet. S...
- 03:29 PM Bug #5800: Search support should degrade gracefully when MN.query is not supported
- The "Open" command is part of search in morpho. We should still support to "open" local data packages in the morpho i...
- 02:37 PM Bug #5839: Save for later may add duplicate 'codeDefinition' elements without defining the code
- Unfortunately there's nothing more to go on. We'll just keep an eye out for it again.
- 11:32 AM Bug #5839: Save for later may add duplicate 'codeDefinition' elements without defining the code
- I tried to save an incomplete eml document with the code definition. Then I opened it and continued to work on it. I ...
01/30/2013
- 09:50 PM Bug #5831: Address "inherited" access policy on data entities
- Both dataTable and otherEntity now use the EML's SM (including AccessPolicy) as a template for their entity SM. This ...
- 02:37 PM Bug #5831: Address "inherited" access policy on data entities
- Actually -- more investigation is needed here. They seem to be treated the same but I am seeing different results as ...
- 02:34 PM Bug #5831: Address "inherited" access policy on data entities
- The data table import copies the access rules, but the other entity import does not.
- 01:04 PM Bug #5831: Address "inherited" access policy on data entities
- Removed inherit option from the data entity access control screen.
Need to check if the data import wizard will copy... - 07:49 AM Bug #5831: Address "inherited" access policy on data entities
- I think the best approach is to remove the "inherit" choice in the entity access screen so that we do not give the us...
- 01:57 PM Bug #5839 (Resolved): Save for later may add duplicate 'codeDefinition' elements without defining the code
- Shirley Han got this error message for a package she was editing.
Problem with saving to metacat in EML200DataPackag...
01/29/2013
- 06:03 PM Bug #5829: NDP wizard: Do not save AccessPolicy in EML
- It's a little convoluted, but works: we collect the access rules in the wizard and add them to the complete ordered m...
- 03:02 PM Bug #5829 (Resolved): NDP wizard: Do not save AccessPolicy in EML
- When you step through the New Data Package wizard, the access policy can be entered. This ends up in the EML file, bu...
- 04:49 PM Bug #5827: Changes to dataTable data are not saved to network
- In the DataViewer class, the code to modify the entity's data when the data table was modified was added. The change ...
- 02:52 PM Bug #5827 (Resolved): Changes to dataTable data are not saved to network
- Follow these steps to reproduce:
1. New DP wizard
2. Import new tabular data file
3. Save to network (only)
4. Ed... - 04:11 PM Bug #5766: Include data identifier in EML (rather than ecogrid:// URL)
- Deferring to A Morpho release where we deal more directly with ORE packages -- identifier pointers will be center sta...
- 04:08 PM Bug #5831 (Resolved): Address "inherited" access policy on data entities
- There is an "inherit from metadata" choice when editing data access policy. This worked when we knew Metacat was hand...
- 04:04 PM Bug #5824: Call CN.setAccessPolicy() when editing access
- This is done. See related bug about "inherited" access rules from metadata on data
- 04:01 PM Bug #5824: Call CN.setAccessPolicy() when editing access
- Now setting access control rules for data using the data entity's SystemMetadata.AccessPolicy.
- 03:15 PM Bug #5824: Call CN.setAccessPolicy() when editing access
- For EML object:
-set the SM.AccessPolicy as reflected in the AccessPage
-save SM locally if the package is a local pa...
01/28/2013
- 05:26 PM Bug #5824: Call CN.setAccessPolicy() when editing access
- This needs to be done for data entities as well. I don't currently see any changes to edit SystemMetadata for these d...
- 05:21 PM Bug #5824: Call CN.setAccessPolicy() when editing access
- Matt suggested that we _not_ save the access rules in EML anymore since they can drift out of synch with what is in t...
- 05:19 PM Bug #5824: Call CN.setAccessPolicy() when editing access
- I'll take this -- should be just like doing the setReplicationPolicy bug.
- 05:13 PM Bug #5825: Call CN.setReplicationPolicy() when editing replication policy
- Now doing the same for data objects.
- 04:55 PM Bug #5825: Call CN.setReplicationPolicy() when editing replication policy
- Now calling the CN for changes to the EML ReplicationPolicy. Note that Morpho calls the CN first to retrieve the late...
- 11:37 AM Bug #5801: Test Morpho against GMN
- We were not recalculating size and checksum of the EML before saving. Now we are.
- 10:36 AM Bug #5796: D1Object in Morpho still uses byte array as data source
- create an issue on the dataone redmine. So the dataone persons can know what we will do.
https://redmine.dataone.org/... - 10:00 AM Bug #5826 (Resolved): Show identifier conflict prompt when conflict is detected
- I removed this window from the save workflow because it seemed like there was no logical question to ask the user - i...
- 09:29 AM Bug #5141: offer a choice to "cancel" from any save
- We allow you to cancel if/when the identifier conflict screen shows. If the save is canceled at this stage, neither t...
01/26/2013
- 08:17 AM Bug #5799: publish using DOI feature
- Move to 2.1 - after site review and a stable 2.0 release. Coincides with DOI reservation/registration supporton Metacat.
- 08:15 AM Bug #5757: Add identifier scheme drop down to id conflict window
- Moving this to 2.1 where we couple it with Metacat DOI+EZID support. The window does have a drop down now, but I have...
- 08:13 AM Bug #5798: ORE documents generated by Morpho do not include obsolescence chain
- I think the best we can do right now is to check for an existing ORE object to obsolete by using the standard id patt...
01/25/2013
- 10:17 PM Bug #5801: Test Morpho against GMN
- This (system metadata byte size vs actual) will be interesting. I wonder if it will always be 8 bytes different. One ...
- 05:39 PM Bug #5801: Test Morpho against GMN
- I created a simple data package by the new data package wizard, then saved it to a GMN node https://mn-stage-orc-1.te...
- 10:13 PM Bug #5794: Cannot add only Genus with Common Name
- This looks good now - keeps the common name for Genus in the place it was entered.
- 05:25 PM Bug #5796: D1Object in Morpho still uses byte array as data source
- I am thinking about the two methods we will add (in comment 1):
getDataInputStream() and setDataInputStream()
I th... - 02:12 PM Bug #5825 (Resolved): Call CN.setReplicationPolicy() when editing replication policy
- This should act the same as the access policy edits. For network packages, we call the CN.setReplicationPolicy() and ...
- 02:08 PM Bug #5824 (Resolved): Call CN.setAccessPolicy() when editing access
- Currently Morpho edits the SystemMetadata.AccessPolicy for an EML and/or data file and uploads a new version of those...
- 01:21 PM Bug #5823: Improve save-to-network performance
- With my NCEAS network connection I did a small and big data file:
big (50 MB) -- 18.5 s
small (119 bytes) -- 8.3 s
01/24/2013
- 11:38 PM Bug #5823: Improve save-to-network performance
- I think in all cases we have the following calls:
-check if EML file exists
-generate new ID if so
-check if data fi... - 11:37 PM Bug #5823 (New): Improve save-to-network performance
- Jing saved data packages with binary data entities from Morpho to a Metacat MN to test the performance of those save ...
- 11:29 AM Bug #5788: It is confusing that the "Save Dialog" comes back again when a user clicks okay in the id collision dialog
- I think it is good to have the save dialog showing while we wait for the save to complete rather than throwing away t...
- 11:22 AM Bug #5809 (New): Default save behavior to always include local store
- Currently you can opt to save your datapackage changes to either LOCAL, NETWORK, or BOTH. This means you can make cha...
- 11:12 AM Bug #5808 (Resolved): Evaluate "Synchronize" feature for potential removal
- Synchronize is very similar to the Save action. I think the only difference right now is that you can invoke synch fr...
- 11:04 AM Bug #5807 (Resolved): Update LaTEX user guide to reflect new 2.0 changes
- Notably:
-Probably need a new D1 section to explain it.
-Preferences (CN/MN selection)
-Authentication (potentiall... - 10:13 AM Bug #5806: NPE when creating profile on fresh Morpho install
- Actually, the order can be changed. Now initializing the *DSS classes before loading/creating the new profile.
- 10:07 AM Bug #5806: NPE when creating profile on fresh Morpho install
- The LDSS is null because the profile dialog is presented before the LDSS is initialized. LDSS relies on the profile s...
- 10:04 AM Bug #5806 (Resolved): NPE when creating profile on fresh Morpho install
- If I remove my .morpho2 directory, I get an NPE at the final step of creating the first new profile. This is when the...
- 09:59 AM Bug #4418: "about" box displays incorrect version number
- Compiled and ran on linux.
- 09:48 AM Bug #4418: "about" box displays incorrect version number
- We can use the AppleJavaExtensions.jar and set our own About... behavior. I've been reading about this and I think we...
01/23/2013
- 05:01 PM Bug #5792: In some situation, morpho uses the same frame to display two data package with different ids (one in local and one in network)
- This is no longer an issue now that we do the identifier resolution in one place before saving to local+network.
- 04:43 PM Bug #5804: Need to prompt for login when attempting to save as "public" user
- Now prompting during network save. If you skip it no save to the network will be attempted.
- 03:09 PM Bug #5804 (Resolved): Need to prompt for login when attempting to save as "public" user
- I get an error when trying to save when I forget that my certificate has expired. We should prompt user to login in t...
- 04:31 PM Bug #5805 (In Progress): Local and Network revisions show at same time in search results
- I can see an older local version of a package in the search results along with the newer network version by doing the...
- 04:23 PM Bug #5797: LocalDataStoreService.generateIdentifier() seems to be called twice
- Found the faulty logic: too many "lastId++" statements.
- 04:21 PM Bug #5795: Centralize identifier conflict resolution during save LOCAL+NETWORK
- I have moved this into the DataStoreServiceController. Now the identifiers are generated as needed before either the ...
- 10:22 AM Bug #5757: Add identifier scheme drop down to id conflict window
- We should consider this feature in the larger "publish" paradigm.
- 10:21 AM Bug #5803 (Resolved): Tag a release of ECP client code
- Before we release, I would like to have a tagged (stable) version of the simple-ecp-client building in hudson. Right ...
- 10:18 AM Bug #5741: Decide on login procedure
- We are going with ECP. There are other, more operations-based, tasks that will need to be done to support this in a p...
- 07:52 AM Bug #5802 (Resolved): Use UUID for local identifiers
- Currently in Morpho 2.x development we are using a "scope.XX" format for our local identifiers. The "XX" is increment...
- 07:45 AM Bug #5622: Modify morpho package id management when we switch to dataone
- Revision handling is finished. We are still discussing an alternative local Id scheme (UUID) and this will be address...
- 07:41 AM Bug #5801 (Resolved): Test Morpho against GMN
- Specifically:
-create (save new package)
-update (save another revision of same package)
-read (open by id)
-sear... - 07:37 AM Bug #5800 (Resolved): Search support should degrade gracefully when MN.query is not supported
- Morpho currently relies on the new-ish and optional MN.query() method and only understands the "pathquery" engine. De...
- 07:22 AM Bug #5796: D1Object in Morpho still uses byte array as data source
- We discussed the following changes to D1Object.
-add: getDataInputStream() and setDataInputStream()
-modify: getData(...
01/22/2013
- 10:48 PM Bug #5799 (New): publish using DOI feature
- Morpho currently uses local identifiers that are not necessarily globally unique for data objects and metadata docume...
- 02:56 PM Bug #5798 (Resolved): ORE documents generated by Morpho do not include obsolescence chain
- Because there is currently no good way for Morpho to know if an ORE package exists for a given set of EML+data, we en...
- 02:49 PM Bug #5797 (Resolved): LocalDataStoreService.generateIdentifier() seems to be called twice
- When saving packages we see local Ids that have been incremented by 2 rather than 1. We should find out why the local...
- 12:21 PM Bug #5794: Cannot add only Genus with Common Name
- Jing made a change to this, but I still cannot add a row with Genus+Common Name and get Morpho to remember it. Am I d...
- 10:29 AM Bug #5788: It is confusing that the "Save Dialog" comes back again when a user clicks okay in the id collision dialog
- Yes, I believe the collision windows is on the top of the save dialog. But it covers it and make users think the save...
- 10:19 AM Bug #5788: It is confusing that the "Save Dialog" comes back again when a user clicks okay in the id collision dialog
- Isn't it just that the collision window is on top of the save dialog? It doesn't really "go away" it is just hidden w...
- 10:14 AM Bug #5788: It is confusing that the "Save Dialog" comes back again when a user clicks okay in the id collision dialog
- Yes.
If there is no id collision window disrupting it, it is fine that the destination selection window remains visi... - 09:43 AM Bug #5788: It is confusing that the "Save Dialog" comes back again when a user clicks okay in the id collision dialog
- Do you mean that the destination selection window remains visible during the save?
01/18/2013
- 04:43 PM Bug #5786: Open command only shows the local packages even though the user has logged in
- Somehow, the open command only search the local. I have to specify the open command to search the network as well in ...
- 04:23 PM Bug #5796 (Resolved): D1Object in Morpho still uses byte array as data source
- When morpho reads and saves the data package to the DataONE network, it handle the D1Objects. The entities, metadata ...
- 04:17 PM Bug #5795 (Resolved): Centralize identifier conflict resolution during save LOCAL+NETWORK
- After splitting the identifier conflict resolution code into separate Local and Network classes, it turns out this ca...
- 04:13 PM Bug #5128: access list does not show all dns in the LTER LDAP tree
- This is a symptom of a server-side issue -- defer to that bug.
- 04:11 PM Bug #4418: "about" box displays incorrect version number
- At the very least there must be someway to change the 1.0 to a more meaningful number
- 03:12 PM Bug #5793: SystemMetadata missing for updated EML doc
- Two pronged approach to this:
-updated Metacat's MN.update() implementation to set the SM.serialVersion to default va... - 01:54 PM Bug #5793: SystemMetadata missing for updated EML doc
- It looks like this is because the SM.serialVersion value was null.
We can fix this in Morpho by using a real value, b... - 01:51 PM Bug #5793: SystemMetadata missing for updated EML doc
- Here is the full stacktrace:
knb 20130118-19:28:04: [ERROR]: Error while creating systemmetadata record: tao.392 [ed... - 01:41 PM Bug #5793 (Resolved): SystemMetadata missing for updated EML doc
- Following the procedure outlined in #5792, we do not see the record for SystemMetadata in the Metacat systemMetadata ...
- 01:45 PM Bug #5794 (Resolved): Cannot add only Genus with Common Name
- In the taxonomic import screen, Sarah Clark tried to add a Genus+Common Name without including a corresponding Specie...
- 11:35 AM Bug #5792 (Resolved): In some situation, morpho uses the same frame to display two data package with different ids (one in local and one in network)
- Here are steps to duplicate the issue:
1. Use the new data package wizard to create a new data package and save it t... - 10:30 AM Bug #1508: New Data Table Wizard: Last Step does not add Table every time
- Sounds like no one can reproduce this...
- 10:18 AM Bug #1708: data import wizard crashes when you click finish
- I have not seen this behavior in the modern generation of Morpho (last 5 years).
- 10:14 AM Bug #5791: The login window shows the subject of name as the login user name
- now the DN will not show up in the username field.
- 10:04 AM Bug #5791: The login window shows the subject of name as the login user name
- Yeah, I think it should just be blank since we are not saving the username or organizational affiliation in the profi...
- 09:55 AM Bug #5791 (Resolved): The login window shows the subject of name as the login user name
- Everyday, when i started morpho and opened the login dialog. It shows:
Orgnaization: knb -Ecoinformatics:
Username:... - 10:07 AM Bug #2465: new lines are displayed in the text boxes but do not show after text entries saved
- The whitespace is preserved, but when displayed online (or in Morpho using the EML stylesheets) the newlines are not ...
- 09:16 AM Bug #1514: Citation DPW
- Leaving this as is - seems to be a conscious decision that only Authors are added to this section.
- 09:05 AM Bug #1514: Citation DPW
- I believe the buttons are "Move up" and "Move down" and are readable in the current generation of Morpho (1.10/2.0). ...
01/17/2013
- 05:25 PM Bug #5141: offer a choice to "cancel" from any save
- In the LocalDataStoreService and DataONEStoreService class, if the user clicks cancel button on the id collision dial...
- 03:24 PM Bug #5141: offer a choice to "cancel" from any save
- I opened a local package and edited the title. The location of the data package is blank. Then I chose "save to local...
- 12:03 PM Bug #5141: offer a choice to "cancel" from any save
- There is now a "Cancel" button on the id conflict screen. If you choose to cancel at that point you can. I agree it i...
- 04:58 PM Bug #5788 (Resolved): It is confusing that the "Save Dialog" comes back again when a user clicks okay in the id collision dialog
- After edits a data package, a user click the "save" button and a destination selection dialog will show up. The user ...
- 02:35 PM Bug #942: wrong icon appears for data in package from metacat
- Modern versions of EML (2.0.1-2.1.1) do not use this multiple-file/triples business for packaging. Closing this.
- 02:29 PM Bug #1502: Text on dpw screen 4 of 15 makes it sound like associated party info is required
- I can kind of see that from the overview page, but the actual associated party page, as dan mentioned, does not have ...
- 02:21 PM Bug #1228: Open command not working correctly on older versions of Morpho
- very old problem
- 02:20 PM Bug #1239: morpho fails when lastId gets out of sync
- Sounds like it correctly checked for the last id, but on a different server. At any rate, this is all different in v ...
- 02:17 PM Bug #2795: The delete selected row feature does not always work.
- Deleting blank rows that I added seems to work.
- 02:03 PM Bug #2799: Access List doesn't include groups at LDAP root
- We changed to use the CN account and group listing for this rather than Metacat.getPrincipals().
- 02:01 PM Bug #1773: Importing code table results in display of ID numbers, not code values
- Morpho renders this reference correctly. Perhaps this was never closed when it was completed.
- 01:51 PM Bug #1848: Error message when exporting data package without saving it
- Tried this on trunk (upcoming morpho 2.0.0) and it works as expected.
- 12:50 PM Bug #5787: Morpho Help build fails
- Fixed now. But be warned -- when building a release you must build the help jar and commit it to SVN as it is not par...
- 12:23 PM Bug #5787 (Resolved): Morpho Help build fails
- I noticed the help is stale and started looking into it. I'm having errors when building the morphohelp.jar
- 12:09 PM Bug #1521: Column name labels in Morpho Data Table Display disappear
- The bold faced headers show even if the column width is made smaller than the width of the text. Assume some improvem...
- 11:55 AM Bug #5139: morpho "preferences" and query speed
- Sounds like we will punt on this. We are moving to a newer search mechanismin Metacat a la DataONE that will use SOLR...
- 11:52 AM Bug #5128: access list does not show all dns in the LTER LDAP tree
- Link the the ticket is dead.
We can't really provide a complete list of all the IP addresses that might follow the ld... - 11:46 AM Bug #5613: Consolidate the metacat code in morpho
- Update to 2.0.0
- 11:46 AM Bug #4961: user guide error re: how to import taxonomic coverage from file
- Will be in v2.0.0
- 11:37 AM Bug #5622: Modify morpho package id management when we switch to dataone
- Moving to 2.0.0 milestone -- I believe this feature is addressed in another bug and is well underway.
- 11:35 AM Bug #4625: authenticate against KNB, switch source to DEV, and still have access
- Morpho is switching to certificate-based authentication and will not be tied to any particular Member Node (Metacat) ...
- 11:30 AM Bug #4031: More features in supporting SSL in morpho
- I think our understanding and use of SSL has improved over the past three years. For Morpho 2.0 we have removed the c...
- 11:28 AM Bug #5786 (Resolved): Open command only shows the local packages even though the user has logged in
- If the user clicked the Open button, the dialog only shows the local data packages even the user has logged in. I bel...
- 11:26 AM Bug #3873: "Enter Information about Owners" wizard reorders dataset creators
- This just got fixed - it came up with our EVOS users and percolated to the top of the pile.
- 11:20 AM Bug #2210: Displaying taxonomic information imported from table
- I am updating the EML documentation (embedded in the eml-coverage.xsd source) to use species binomial in the red mapl...
- 11:12 AM Bug #2094: "New Profile" keyboard navigation skips page 2
- There is no longer a Metacat screen, so this is probably a moot point. (tested key navigation in os x and it worked w...
- 11:10 AM Bug #1992: DP Wizard: lat/long coordinates not displayed correctly or saved
- Editing geographic coordinates and then re-editing them works for me with no loss or perceived loss of user-entered d...
- 10:59 AM Bug #1555: Unable to open data files of local data packages that are created in another profile
- I cannot open a datapackage from a different profile than my current profile. Closing.
- 10:55 AM Bug #5117: Add an "Edit Profile..." dialog
- In Morpho 2.0, the profile will no longer be tied to any specific log-in. The profile will still store a scope for id...
- 10:52 AM Bug #5264: EML 2.1.1 support
- This has been in Morpho since 1.10.0
- 10:50 AM Bug #5238: Use UTF-8 for file reading and writing
- This should be closed. UTF-8 is used exclusively in Morpho - especially important now that we have so much internatio...
Also available in: Atom