Kepler

04/15/2008

08:01 PM Bug #3097: incorrect classpath in generated ptexecute.sh and momlexecute.sh

I tried wfexecute, it looks pretty slick, below are some comments.
- The name is a little funny. wtf comes to mind, ... Christopher Brooks

07:16 PM Bug #3122: Get installer size down

For comparison,
Ptolemy II 7.0.1 Windows Installer: 131Mb
Ptolemy II 7.0.1 Windows zip: 44.7Mb
Ptolemy II 7.0.1 Unix... Christopher Brooks

07:03 PM Bug #3207: consolidate command line execution actors

I can fold this in to the ptII devel tree asap, but should this ship in 1.0.0
or wait? Christopher Brooks

04:13 PM Bug #3207: consolidate command line execution actors

I updated the External Execution actor based on the design in comment #2.
If there are no complaints, I will remove ... Daniel Crawl

07:02 PM Bug #3208: consolidate matlab actors

Perhaps consolidating the Matlab actors should be post 1.0.0? Christopher Brooks

06:59 PM Bug #2531: The link from Kepler intro page to the Ptolemy quick links page is broken

I checked this in Kepler-1.0.0 and the Ptolemy demos all open.
I'm closing this bug. Christopher Brooks

06:29 PM Bug #3179: Distinguish "download" and "information" attribute values in eml distributlon online url

Tested it against server and it worked. Jing Tao

03:17 PM Bug #3209: ecogrid SearchRegistryAction error when disconnected from network

I'm reopening this since the error window now occurs regardless of any data sources actually being used (either the D... Daniel Crawl

02:51 PM Bug #3130: Add an accelerator (keyboard shortcut) for opening a new blank workflow

Thanks Christopher, works great. Daniel Crawl

02:39 PM Bug #3206: ecogrid error message occurs when running disconnected from network

I followed the procedure and duplicated this error message. However, i didn't see it hurt anything. I took a look at ... Jing Tao

02:34 PM Bug #3223 (New): interactive graphics in R

Hello,
Just fyi, the identify() function does not seem to work when called from the RExpression actor. (I'm using... Kevin Drury

02:07 PM Bug #3222 (New): save new workflow template

Hello,
This is a suggestion about usability, not a bug. It would be very nice to be able to save a workflow that... Kevin Drury

01:09 PM Bug #3144: add link in OSX Applications folder

The mac installer now installs like this:
/Applications/Kepler/Kepler(.app) - launcher directory...includes most of ... Chad Berkley

12:18 PM Bug #3221 (New): offset new windows

New blank workflow windows overlap exactly. It would be nice if each new window was slightly offset from the last. Derik Barseghian

11:35 AM Bug #3202: Remove the workflows directory from the release

I created two clean targets in the build script so that you can either clean the directory for a windows or a mac ins... Chad Berkley

04/14/2008

11:29 PM Bug #3130: Add an accelerator (keyboard shortcut) for opening a new blank workflow

I merged these changes into the ptII tree, but not into
the ptII rel-7-0-beta-2 branch for two reasons:
1) Adding Con... Christopher Brooks

01:26 PM Bug #3130: Add an accelerator (keyboard shortcut) for opening a new blank workflow

This has been implemented in TableauFrame.java.
However, ClassDefinitionController.java already set meta-n to create... Daniel Crawl

06:55 PM Bug #2962: Add metadata to data tokens so that it can be used downstream

Turns out there is a strict vector test that does not allow extra attributes on a vector (used in barplot() method). ... ben leinfelder

06:31 PM Bug #3179: Distinguish "download" and "information" attribute values in eml distributlon online url

Modified the Entity and EML2Parser class. The value of attribute "function" in distribution url will be stored. In EM... Jing Tao

03:01 PM Bug #3140: RBNBToKepler2 actor output port generation problem

niagara-dev is back up, contains a few empty channels and a channel with a period in its name, and all is well. Derik Barseghian

02:23 PM Bug #3220: "Save" from TextEditor interferes with workflow save-before-closing prompt

aaron will take a look at this - really dives into the ptolemy code. Some starting places:
ptolemy.actor.gui.Effigy
... ben leinfelder

12:15 PM Bug #3220 (New): "Save" from TextEditor interferes with workflow save-before-closing prompt

While editing an RExpression script using the built-in TextEditor ("Open Actor"), Kevin Drury found that if he used "... ben leinfelder

01:41 PM Bug #3144: add link in OSX Applications folder

I think the installed version is for users only. Developers who want to write java code should get a development ver... Chad Berkley

01:13 PM Bug #2318: Copyrights and licenses of subpackages need to be handled

IANAL (I am not a lawyer), but what I suggest is that you clearly document
that some portions of Kepler are released ... Christopher Brooks

11:42 AM Bug #2318: Copyrights and licenses of subpackages need to be handled

I have removed those from the RELEASE-BRANCH-1-0-0, I should have said. They are still in head. Derik Barseghian

11:40 AM Bug #2318: Copyrights and licenses of subpackages need to be handled

I have removed rbnb-3.1b2.jar and RDIPD0Ensemble.jar (and associated code and workflows). Derik Barseghian

10:36 AM Bug #3216: Demo workflows do not run

IPCC_Change_MinTemp.xml, IPCC_Change_Precip.xml, IPCC_Change_Rad,
IPCC_Change_Wind.xml, - Errors upon opening. Path ... Dan Higgins

04/11/2008

05:43 PM Bug #2318: Copyrights and licenses of subpackages need to be handled

If you need to remove a jar...
If there is a jar on the "bad list" and you cannot get the license fixed. (Say it is ... David Welker

03:36 PM Bug #2318: Copyrights and licenses of subpackages need to be handled

The problem with jar licenses illustrates one good reason to cleanly partition the Kepler system into a core of essen... Timothy McPhillips

03:03 PM Bug #2318: Copyrights and licenses of subpackages need to be handled

We have some major problems with licensing here. Very major problems.
Sean Riddle and I have examined licenses for o... David Welker

03:06 PM Bug #3216: Demo workflows do not run

It looks like most, if not all, of the problems reported here are Macintosh (and maybe Linux) specific!
I.e. workflo... Dan Higgins

03:04 PM Bug #3144: add link in OSX Applications folder

Dan's suggestion that the folder structure in the OS X installation mimic the development version checked out of CVS ... Timothy McPhillips

02:07 PM Bug #3144: add link in OSX Applications folder

I took a look at the installation XML definition, with an eye toward hiding
away much of the complexity. I got it to ... Sean Riddle

02:12 PM Bug #3219: White space in installation path fails on config file read

added to both the HEAD and the release branch ben leinfelder

11:16 AM Bug #3219: White space in installation path fails on config file read

*** Bug 3215 has been marked as a duplicate of this bug. *** Derik Barseghian

11:10 AM Bug #3219: White space in installation path fails on config file read

I do not have write permissions yet for checking it in. Aaron Aaron

11:06 AM Bug #3219 (Resolved): White space in installation path fails on config file read

When Kepler is installed on windows with white spaces in the installation path an exception is thrown from ConfigXML.... Aaron Aaron

11:16 AM Bug #3215: Spaces in KEPLER path causes build problems

Duplicate of bug 3219.
*** This bug has been marked as a duplicate of bug 3219 *** Derik Barseghian

04/10/2008

03:34 PM Bug #3122: Get installer size down

windows installer with R: 166 MB
windows installer without R: 93 MB Chad Berkley

02:57 PM Bug #3122: Get installer size down

added new build targets to pair down the kepler directory for each operating system. so far I have built a Mac insta... Chad Berkley

01:55 PM Bug #2318: Copyrights and licenses of subpackages need to be handled

The licensing on gnu-regexp-1.0.8.jar could be problematic. It is only used in org.ecoinformatics.util.Util.substitut... Sean Riddle

11:45 AM Bug #2318: Copyrights and licenses of subpackages need to be handled

Note that our proposal for handling LGPL jars in Kepler 1.0 is limited to those with version 3 of the LGPL license only. Timothy McPhillips

11:30 AM Bug #2318: Copyrights and licenses of subpackages need to be handled

David Welker is investigating the licenses for all 3rd-party jar files included in Kepler. Not all of them are BSD co... Timothy McPhillips

11:49 AM Bug #3216: Demo workflows do not run

I'm using MacOS 10.5.2, Java 1.5.0_13, with a 2.4 GHz processor and 2 gigs of RAM. Sean Riddle

11:46 AM Bug #3130: Add an accelerator (keyboard shortcut) for opening a new blank workflow

I'll postpone. Looking in Top.java, where I thought this change might go (now I'm not sure), it isn't immediately app... Derik Barseghian

11:23 AM Bug #3196: Find/Change license on gpl/lgpl code

> Jianting Zhang suggests removing GRASS support in cpp/gis/grass from the Kepler
> distribution. Comments?
There a... Chad Berkley

11:06 AM Bug #3196: Find/Change license on gpl/lgpl code

Source licenses update:
Jianting Zhang suggests removing GRASS support in cpp/gis/grass from the Kepler distribution... Timothy McPhillips

04/09/2008

03:31 PM Bug #3026: Actor documentation does not appear in older workflows

Done with all but ENM demos. I will wait until they all run before I run the automated document replacement. Sean Riddle

02:28 PM Bug #3216: Demo workflows do not run

IPCC_Change_MinTemp.xml, IPCC_Change_Precip.xml, IPCC_Change_Rad,
IPCC_Change_Wind.xml, - Errors upon opening. ---- ... Dan Higgins

12:41 PM Bug #3216: Demo workflows do not run

ENM/GARP_SingleSpecies_BestRuleSet-IV.xml - After completing its ten iterations, actually crashes the Kepler environm... Sean Riddle

11:32 AM Bug #3216 (Resolved): Demo workflows do not run

I have run into a couple of demo workflows that don't run while checking the replacement of the embedded documentatio... Sean Riddle

01:12 PM Bug #3195: Check all documentation for 1.0 release

Kirsten has found a bunch of actors that still have no documentation. Here's the current list:
AddPointToSVG (no do... Chad Berkley

12:23 PM Bug #3182: check for consistent licensing text in all source files

I was given permission by John Harris on 4/9/08 to change the license in the code owned by Numeric Solutions. I chan... Chad Berkley

11:51 AM Bug #3126: add R system installation to the Mac installer

This is now working on multiple computers. I'll send the installer out for others to test. Chad Berkley

10:53 AM Bug #3187: RExpression actor does not share focus

This will not be included in the branch of ptolemy (rel70b2) we are using to build kepler 1.0
Retargeting for after 1... ben leinfelder

10:14 AM Bug #3211: Need XSLT stylesheet to build actor docs

created stylesheet and build target to build the actor documentation and an index to go with it. Chad Berkley

04/08/2008

05:59 PM Bug #3215 (Resolved): Spaces in KEPLER path causes build problems

Aaron Schultz reports - when trying to build under windows (in eclipse) with spaces in the -DKEPLER variable, Config... Derik Barseghian

10:51 AM Bug #3207: consolidate command line execution actors

Hi Christopher,
Thanks for helping out. The Ptolemy Exec actor is called "External
Execution" in its KAR file, so th... Daniel Crawl

10:38 AM Bug #3214: R actor does not handle single quotes in character string data

R allows the use of single or double quotes to indicate character strings. The RExpression actor was using single qu... ben leinfelder

10:34 AM Bug #3214 (Resolved): R actor does not handle single quotes in character string data

When string values (in my case they were from a RecordToken emitted by the EML actor) include single quotes (or apost... ben leinfelder

10:31 AM Bug #3213: R expression actor introduces leading/trailing whitespace

Added the "strip.white=TRUE" parameter to calls to the scan() method in the R code we generate when dealing with char... ben leinfelder

10:29 AM Bug #3213 (Resolved): R expression actor introduces leading/trailing whitespace

When a temporary file is used for caching length R commands, leading whitespace is being added. The list values: "OB... ben leinfelder

10:26 AM Bug #3212: EML2 Actor does not reconfigure available columns after initial download

Added calls to the generteLabelListAndTypteListFromColumns() [sic] method whenever the _columns variable was modified. ben leinfelder

10:24 AM Bug #3212 (Resolved): EML2 Actor does not reconfigure available columns after initial download

After the selected entity has been changed for the EML actor, the ports are reconfigured to show the available column... ben leinfelder

10:02 AM Bug #3209: ecogrid SearchRegistryAction error when disconnected from network

added messagehandler error reporting when the services registry is not available.
if, on start up, there is an error ... ben leinfelder

04/07/2008

09:21 PM Bug #3210: add netCDF support to Kepler

The RExpression actor could also be used to read/write netCDF files using one of several netCDF packages available in... Dan Higgins

04:56 PM Bug #3156: RBNBToKepler actors should only download data for connected ports.

This has been fixed. I will close it when bug 3159 is closed. Derik Barseghian

04:55 PM Bug #3161: progress meter when downloading data with RBNBToKepler actors

I'm using org.ecoinformatics.seek.datasource.DataSourceIcon now, and the icon renders "Busy" when busy.
If this is ... Derik Barseghian

04:51 PM Bug #3155: RBNBToKepler actors should allow different output formats

This has been added to the new DataTurbine actor.
Bug can be closed when bug 3159 is fixed. Derik Barseghian

04:49 PM Bug #3140: RBNBToKepler2 actor output port generation problem

I believe these are the answers to my original questions:
1) Does one need to do a Fetch to get channel types?
Yes.... Derik Barseghian

03:39 PM Bug #3126: add R system installation to the Mac installer

This works on my computer, but for some reason not on other computers. not sure why. reopening the bug. Chad Berkley

11:36 AM Bug #3126: add R system installation to the Mac installer

The installer can now include and launch the R installer. I tried figuring out a way to not have to launch the R ins... Chad Berkley

10:46 AM Bug #3126: add R system installation to the Mac installer

I've got this mostly working now. Just adding some finishing touches. Chad Berkley

03:25 PM Bug #3211 (Resolved): Need XSLT stylesheet to build actor docs

Kirsten wants to include the actor documentation in an indexed PDF along with the release. We need to write an XSLT ... Chad Berkley

03:11 PM Bug #3198: test dynamic library installations on all platforms

does not work on ubuntu. need to figure out how to set the LD_LIBRARY_PATH with izpack. Chad Berkley

02:39 PM Bug #3198: test dynamic library installations on all platforms

tested on windows. works. Chad Berkley

02:15 PM Bug #3198: test dynamic library installations on all platforms

tested on osx. works. Chad Berkley

01:48 PM Bug #3209: ecogrid SearchRegistryAction error when disconnected from network

I'd say show an alert when something is trying to use a data source, e.g. the ecogrid actor. Otherwise, ignore it. Daniel Crawl

12:32 PM Bug #3144: add link in OSX Applications folder

I think that Kepler.app should be inside the Kepler folder mainly to keep the installed version looking like the CBS ... Dan Higgins

12:00 PM Bug #3144: add link in OSX Applications folder

Currently, Kepler is installed in /Applications/Kepler. The Kepler.app shortcut shows up in the Kepler folder. This... Chad Berkley

12:04 PM Bug #2872: md5 checksums

I will do this when the final installers are cut. Chad Berkley

12:03 PM Bug #3199: include R 2.6 in the installer

R 2.6.2 is now included in the windows and mac installer. We may want to have a non-R installer for both mac and win... Chad Berkley

09:26 AM Bug #3196: Find/Change license on gpl/lgpl code

IANAL, but my recollection of the LGPL is that you need to make the source code
available, but it is not necessary to... Christopher Brooks

04/04/2008

05:41 PM Bug #3196: Find/Change license on gpl/lgpl code

Apache-licensed code is generally redistributable in both source and binary forms (it is similar to BSD), although it... Matt Jones

05:31 PM Bug #3196: Find/Change license on gpl/lgpl code

Ok, we're looking more deeply into LGPL. Thanks, Christopher. I think we'll at least need to include the source code... Timothy McPhillips

03:04 PM Bug #3196: Find/Change license on gpl/lgpl code

I also thought that LGPL'd code should be acceptable.
But what about the Apache Licence, Kepler has a whole bunch o... Dan Higgins

02:54 PM Bug #3196: Find/Change license on gpl/lgpl code

I might be confused, but I thought that LGPL code was ok to include
because it is non-viral
http://ptolemy.eecs.berke... Christopher Brooks

02:39 PM Bug #3196: Find/Change license on gpl/lgpl code

The jar file lib/jar/cipres/jacorb.jar needs to be removed and dependencies on it satisfied some other way. The Jaco... Timothy McPhillips

05:01 PM Bug #2965: Ability to easily concatenate identical data structures (EMLDatasource)

I've worked with kevin to implement this in some of his workflows.
I've also packaged a custom R actor called "UnionA... ben leinfelder

02:44 PM Bug #3154: Documentation missing for DarwinCoreDataSource

added documentation to the actor moml and also added method for pulling the documentation from the actor library for ... ben leinfelder

10:06 AM Bug #3209: ecogrid SearchRegistryAction error when disconnected from network

sounds like some error catching is in order. should there be an alert using MessageHandler (attack of the pop up win... ben leinfelder

10:00 AM Bug #3209 (Resolved): ecogrid SearchRegistryAction error when disconnected from network

About 30 seconds after starting kepler with no network connection, a long error
message is displayed, starting with:... Daniel Crawl

10:05 AM Bug #3210 (New): add netCDF support to Kepler

Many scientific data sets are represented in netcdf format (http://www.unidata.ucar.edu/software/netcdf/). Kepler sh... Matt Jones

09:17 AM Bug #3208: consolidate matlab actors

I can help on this one.
Combining the two actors seems reasonable to me.
In addition, the expression language has a ... Christopher Brooks

09:10 AM Bug #3208 (New): consolidate matlab actors

MatlabExpression and PtMatlabExpression both execute expressions
in matlab. They should be combined such that if the... Daniel Crawl

09:12 AM Bug #3207: consolidate command line execution actors

The Ptolemy Exec actor also has duplicate functionality.
I looked at CommandLineExec and it looked like it
really nee... Christopher Brooks

09:03 AM Bug #3207 (Resolved): consolidate command line execution actors

Command Line Exec and External Execution have different interfaces
but perform the same basic functionality. They sh... Daniel Crawl

04/03/2008

04:30 PM Bug #3206 (Resolved): ecogrid error message occurs when running disconnected from network

[java] ERROR (org.ecoinformatics.seek.datasource.EcogridDataCacheItem:cleanUpCache:373) Couldn't close the output str... Daniel Crawl

01:51 PM Bug #3201: Remove all links to FSM from the GUI

It looks like this works. I'll close this, but if anyone has any objections to the way this works or thinks it break... Chad Berkley

01:46 PM Bug #3200: create a 1.0.0 branch in cvs

The branch is there. See kepler-dev email for checkin instructions. Chad Berkley

01:12 PM Bug #3167: Customize documentation fails when ports added

This seems to work for me. I might have fixed it and forgotten to close this bug. reopen this bug if it fails to wo... Chad Berkley

01:08 PM Bug #3138: remove the distributed options menu item for 1.0 release

both have now been removed from the release branch. Chad Berkley

09:24 AM Bug #3205 (New): gdalTranslate actor crashes on bad format and won't work with all gdal formats

Niels Hoffman reports that the gdalTranslate actor will not work with all of the current formats supported by gdal_tr... Chad Berkley

08:00 AM Bug #3203: Add dateType

See also https://chess.eecs.berkeley.edu/bugzilla/show_bug.cgi?id=141
"Plotter should be better about displaying times" Christopher Brooks

06:44 AM Bug #2571: position of new elements on screen

One way to do this would be to translate the coordinates
relative to the location of the mouse. Christopher Brooks

06:41 AM Bug #3110: Can't access actors via http

I can't replicate my own bug (Can't access actors via http),
so I'm closing this.
Christopher Brooks

04/02/2008

04:32 PM Bug #3162: ptExecuteConfig.xml depends on removed basicKeplerLibrary.xml

basicKeplerLibrary is not necessary to run ptexecute and has been removed from
ptExecuteConfig.xml. Daniel Crawl

04:15 PM Bug #3097: incorrect classpath in generated ptexecute.sh and momlexecute.sh

I added a new target to the build file: 'ant build_wfexecute_sh' creates
wfexecute.sh, which accepts -gui/-nogui and ... Daniel Crawl

09:13 AM Bug #3097: incorrect classpath in generated ptexecute.sh and momlexecute.sh

On the 1.0 release conference call, we discussed creating one shell script to replace all of the current ones. There... Chad Berkley

03:11 PM Bug #2509: FSM & Modal Model Menu selections do not work

I hadn't realized about the State button being on the toolbar. So it seems that we can successfully create an FSM. S... Matt Jones

02:47 PM Bug #2509: FSM & Modal Model Menu selections do not work

In Ptolemy, a State does appear in the left hand palette.
This state is not present in Kepler.
However, in both Ptol... Christopher Brooks

02:28 PM Bug #2509: FSM & Modal Model Menu selections do not work

Actually, the problem was not with the menu item itself -- the problem is that when you create an FSM model, the acto... Matt Jones

02:17 PM Bug #2509: FSM & Modal Model Menu selections do not work

File | New Workflow | FSM Model
and
File | New Workflow | Modal Model
both work for me.
I'm marking this as fixed, ... Christopher Brooks

08:59 AM Bug #2509: FSM & Modal Model Menu selections do not work

moving to post 1.0 Chad Berkley

02:19 PM Bug #3201: Remove all links to FSM from the GUI

Ok, I've fixed bug #3022 and bug #2509.
bug #3204 is a RFE for FSM examples to be added to Kepler
Unless someone ind... Christopher Brooks

09:38 AM Bug #3201: Remove all links to FSM from the GUI

Mainly the reason is that we don't have time to re-integrate it and figure out all of the dependencies that we've bro... Chad Berkley

09:31 AM Bug #3201: Remove all links to FSM from the GUI

I feel that Kepler should ship with FSM.
What's the reasoning behind not shipping FSM?
There is this bug:
FSM State ... Christopher Brooks

09:00 AM Bug #3201 (Resolved): Remove all links to FSM from the GUI

We are postponing re-adding the FSM items to kepler to post-1.0. All GUI items related to FSM should be removed from... Chad Berkley

02:15 PM Bug #3204 (New): Kepler should have FSM examples

Finite State Machines are very powerful, there should
be a Kepler-specific scientific workflow that
illustrates FSMs. Christopher Brooks

11:31 AM Bug #3022: FSM State cannot be opened from context menu

The issue here is that in Ptolemy, the transition menu choices
are "Look Inside", not "Open Actor".
See bug #2110 f... Christopher Brooks

08:58 AM Bug #3022: FSM State cannot be opened from context menu

moving to post 1.0. Chad Berkley

11:13 AM Bug #3203 (Resolved): Add dateType

Add a date type to Kepler; being able to pass date tokens between a variety of actors would be nice. My original moti... Derik Barseghian

10:50 AM Bug #3196: Find/Change license on gpl/lgpl code

Here are the GPL'd and LGPL'd sources Sean Riddle found in the
Kepler source tree (with known authors/copyright hold... Timothy McPhillips

08:45 AM Bug #3196 (Resolved): Find/Change license on gpl/lgpl code

We need to find any code and/or libraries that currently are using gpl or lgpl as the license and negotiate with the ... Chad Berkley

10:30 AM Bug #2531: The link from Kepler intro page to the Ptolemy quick links page is broken

This bug is ready to be closed.
It should be checked in the release branch and then closed. Christopher Brooks

10:16 AM Bug #2531: The link from Kepler intro page to the Ptolemy quick links page is broken

This bug could be assigned to me.
I just added CCodeGenerator to this list of classes to be
excluded in:
kepler/conf... Christopher Brooks

08:51 AM Bug #2531: The link from Kepler intro page to the Ptolemy quick links page is broken

Ilkay will take this on. We basically need to make sure that any ptII demos that are actually linked to the kepler d... Chad Berkley

09:27 AM Bug #3172: windows mouse wheel doesn't scroll canvas

This is fixed in the ptII devel branch. See:
https://chess.eecs.berkeley.edu/bugzilla/show_bug.cgi?id=73
I believe ... Christopher Brooks

09:13 AM Bug #3172: windows mouse wheel doesn't scroll canvas

This should be fixed with the other ui bugs that are outstanding. pushing this to 1.1. Chad Berkley

09:10 AM Bug #3149: cannot add arbitrary jars when exporting archive

postponing to 1.1.0 There are numerous items that need to be worked out with this bug. How the user interacts with ... Chad Berkley

09:09 AM Bug #3130: Add an accelerator (keyboard shortcut) for opening a new blank workflow

If this bug is easily fixable, do it. If not, postpone it. Chad Berkley

09:08 AM Bug #3115: Need to check Kepler for memory leaks

We should run each of the demo workflows with a memory usage analyzer to make sure that no major leaks are found with... Chad Berkley

09:06 AM Bug #3108: ENM GARP Baseline 3-Actor GARP - Browser Display demo fails with NameDuplication: convertTo?

We should not be linking to any workflows that do not work. All html links need to be checked and if any broken work... Chad Berkley

09:04 AM Bug #3126: add R system installation to the Mac installer

*** Bug 3101 has been marked as a duplicate of this bug. *** Chad Berkley

08:48 AM Bug #3126: add R system installation to the Mac installer

We should also try to get this to work with the NMI build. Chad Berkley

09:04 AM Bug #3101: Inclusion of R executable for Mac and Linux ?

duplicate bug of 3126
*** This bug has been marked as a duplicate of bug 3126 *** Chad Berkley

09:03 AM Bug #3074: Code library installation issues

postponing this development until after 1.0. We just don't have the time to get this done. This will be something k... Chad Berkley

09:02 AM Bug #3202 (Resolved): Remove the workflows directory from the release

Many of the workflows in this directory are broken, and although they are useful as examples, we do not want to inclu... Chad Berkley

08:57 AM Bug #3144: add link in OSX Applications folder

also need to clean up the installer for osx. make sure no windows specific files are included. Sean also agreed to ... Chad Berkley

08:54 AM Bug #3200 (Resolved): create a 1.0.0 branch in cvs

We need a branch for 1.0 targeted development so that normal dev can go on in the head. Any items that need to be in... Chad Berkley

08:52 AM Bug #3122: Get installer size down

Try to locate all extraneous items and remove them from the installer. Chad Berkley

08:50 AM Bug #3199 (Resolved): include R 2.6 in the installer

We are currently including 2.4 in the windows installer. we'd like to upgrade that to 2.6 and also see if we can get... Chad Berkley

08:49 AM Bug #3198 (Resolved): test dynamic library installations on all platforms

Make sure that the dylibs work on windows, osx and linux and that they get put in the correct place by the installer. Chad Berkley

08:41 AM Bug #3195 (Resolved): Check all documentation for 1.0 release

All of the documentation needs to be checked for accuracy and completeness before the 1.0 release, which is currently... Chad Berkley

04/01/2008

06:22 PM Bug #3124: Automatically refresh ecogrid sources (endpoints) once per Kepler

data sources are now refreshed by a new thread that is scheduled to execute 30 seconds (configurable in config.xml) a... ben leinfelder

02:49 PM Bug #3124: Automatically refresh ecogrid sources (endpoints) once per Kepler

from 1.0.0 release meeting:
-at startup, queue a thread for refreshing the endpoints after a small delay (~minute) ben leinfelder

03:39 PM Bug #3179: Distinguish "download" and "information" attribute values in eml distributlon online url

Here are solutions after the 04/01/2008 telephone conference:
1. Modify the query to exclude the eml packages which o... Jing Tao

03:02 PM Bug #3192: behavior of documentation actor

I may have found the reason for the loss of my documentation after the first view in Windows XP. When I right-click ... Kevin Drury

03:01 PM Bug #3154: Documentation missing for DarwinCoreDataSource

-solicit information from Dave V. and Jing to flesh out documentation in the actor library
-include actor documentati... ben leinfelder

10:11 AM Bug #3147: Get rid of Swing componets in Ecogrid data access classes

As ben said, this bug was fixed. Jing Tao

03/31/2008

11:58 PM Bug #3194 (New): add actors to support Sun Grid

Chirs Zhu <chris.zhu@sun.com> and others at Sun have contributed actors that allow Kepler to be used as a client for ... Matt Jones

04:38 PM Bug #3192 (New): behavior of documentation actor

Hello. The documentation actor will be an important component of workflows that outlive individual analyst's involve... Kevin Drury

03:00 PM Bug #3103: Building actor documentation from within Kepler fails

This is now fixed. The documentation can be edited with the Customize function. Chad Berkley

01:36 PM Bug #3187: RExpression actor does not share focus

I think you have it inverted. the frame _won't_ be null in our Kepler case for the R actor. The code block should b... ben leinfelder

01:16 PM Bug #3187: RExpression actor does not share focus

Ok, I put the setTitle inside the if block, so this might now work.
What we have is:
if (frame == null) {
... Christopher Brooks

11:14 AM Bug #3187: RExpression actor does not share focus

It's less than ideal to have a bunch of open text editor windows all named "Unnamed".
But I think we can handle it fo... ben leinfelder

12:43 PM Bug #3152: Use EcoGridServicesController with EcoGridWriter actor

retargeting for after 1.0 - not a high priority. ben leinfelder

12:38 PM Bug #3147: Get rid of Swing componets in Ecogrid data access classes

I believe this is fixed. There was spot in the EML actor that was using Swing directly, but I replaced that with Mes... ben leinfelder

12:18 PM Bug #3138: remove the distributed options menu item for 1.0 release

We should also remove the DCA actor from the tree to be sure it isn't used, and check the documentation to be sure we... Matt Jones

11:24 AM Bug #3184: right-click context menu in RExpression actor

the best solution for adding a feature like code commenting would be to use an external editor.
there's apparently a ... ben leinfelder

11:17 AM Bug #3185: Ctrl-z does not "undo" in RExpression actor

This has been added in the ptolemy base classes now. ben leinfelder

11:16 AM Bug #3186: commit RExpression code changes, but leave actor open

Rather than just double clicking on the actor, if you "Open" the actor, the expression editing window will appear. c... ben leinfelder

11:15 AM Bug #3191: Merge TextEditor changes with ptII source

closing this bug - I'm happy with the undo/redo. (thanks, cxh) ben leinfelder

03/29/2008

08:53 PM Bug #3191: Merge TextEditor changes with ptII source

Ok, I updated Query, UndoListener and TextEditor in the ptII tree and
removed these files from kepler/src/exp/ptolemy... Christopher Brooks

08:46 PM Bug #3187: RExpression actor does not share focus

The change to TextEditorTableau is marked below
if (frame == null) {
frame = new TextEditor(title... Christopher Brooks

03/28/2008

02:48 PM Bug #3191 (Resolved): Merge TextEditor changes with ptII source

These changes from src/exp in Kepler should be included in the ptII tree:
src/exp/ptolemy/gui
Query.java
UndoL... ben leinfelder

03/27/2008

04:54 PM Bug #3187: RExpression actor does not share focus

Until a change is included in ptII code (specifically ptolemy.actor.gui.TextEditorTableau), only one RExpresison text... ben leinfelder

03:26 PM Bug #3187: RExpression actor does not share focus

By using the ptolemy.actor.gui.TextEditor when "Open Actor" is invoked on the RExpression we can support having multi... ben leinfelder

03:28 PM Bug #3185: Ctrl-z does not "undo" in RExpression actor

from kepler-dev email that i sent:
---
After looking at this again, I realized it could be made even more
generic b... ben leinfelder

10:19 AM Bug #3185: Ctrl-z does not "undo" in RExpression actor

Locally, I have implemented an UndoableEditListener for the JTextArea that is used in ptolemy.gui.Query along with so... ben leinfelder

03:09 PM Bug #3186: commit RExpression code changes, but leave actor open

Proposed implementation (working locally for me):
By using the ptolemy.actor.gui.TextEditor when "Open Actor" is invo... ben leinfelder

03/26/2008

04:01 PM Bug #3189 (New): CommandLineExec needs ability to kill spawned process

Many times when authoring/debugging a workflow, the process spawned by the command line actor runs infinitely. It wo... Chad Berkley

03/25/2008

05:29 PM Bug #3187 (In Progress): RExpression actor does not share focus

It would be nice to be able to change the focus from an open RExpression actor to another Kepler window. Two cases t... Kevin Drury

05:18 PM Bug #3186 (Resolved): commit RExpression code changes, but leave actor open

R-script development within an RExpression actor can get pretty tedious. For example, when you add a line of code a... Kevin Drury

05:06 PM Bug #3185 (Resolved): Ctrl-z does not "undo" in RExpression actor

Ctrl-c (copy) and Ctrl-v (paste) work as expected in the RExpression actor. Is it possible to also make Ctrl-z (undo... Kevin Drury

05:02 PM Bug #3184 (Resolved): right-click context menu in RExpression actor

One thing that would make Kepler a more friendly environment for developing analyses would be the ability to highligh... Kevin Drury

03/24/2008

07:39 PM Bug #3002: Copy/Paste of a relation (diamond)

When ports and relations are created from the toolbar they now don't overlap.
This should help prevent problems with ... Christopher Brooks

10:53 AM Bug #3182: check for consistent licensing text in all source files

No, I think this is a separate item from the copyright check, even though we might do them simultaneously with a sing... Matt Jones

10:47 AM Bug #3182: check for consistent licensing text in all source files

Should this be combined with "Copyrights of subpackages need to be handled"
http://bugzilla.ecoinformatics.org/show_b... Christopher Brooks

10:18 AM Bug #3182 (Resolved): check for consistent licensing text in all source files

Kepler is licensed under the BSD. We need to check that all code is properly licensed this way throughout the releas... Matt Jones

10:28 AM Bug #3183 (New): Return/Enter does not select default button in dialog boxes

Pressing Return/Enter does not select the default button (usually 'Commit') of dialogs. This should be the case accor... Sean Riddle

03/22/2008

11:10 AM Bug #2870: Copy/Paste of composite actors

I think I have this fixed by making changes to moml/MoMLVariableChecker.java
I've added a test case:
ptII/ptolemy/mo... Christopher Brooks

03/21/2008

04:20 PM Bug #3056: unable to print output of Display actor

The "Print" menu choice is now enabled in Display. The change was to ptolemy/actor/gui/TextEditor.java
Getting multi... Christopher Brooks

03/19/2008

01:58 PM Bug #3107: http links don't work: Unsupported file type or connection not supported

I'm closing this. We can revisit this problem when ptII and Kepler require Java 1.6. At that point, we can change t... Chad Berkley

01:55 PM Bug #3107: http links don't work: Unsupported file type or connection not supported

I can no longer reproduce this? I'm not sure what's up, or what changed?
I tried it on the same machine (my laptop w... Christopher Brooks

03/18/2008

04:00 PM Bug #3179: Distinguish "download" and "information" attribute values in eml distributlon online url

Yeah. So here is my approach:
I am not exactly sure how hard the query will be implemented, but I don't think it will... Jing Tao

03:50 PM Bug #3179: Distinguish "download" and "information" attribute values in eml distributlon online url

Whether or not the query is altered, I think Kepler will still need to handle both types of distribution urls. I'm t... ben leinfelder

03:45 PM Bug #3179: Distinguish "download" and "information" attribute values in eml distributlon online url

from Jing:
I am not exactly sure how hard the query will be implemented, but I don't
think it will be too hard. Howe... ben leinfelder

03:40 PM Bug #3179 (Resolved): Distinguish "download" and "information" attribute values in eml distributlon online url

I agree, I don't think it does handle this, but this is a bug in my opinion. It should distinguish these URL types. ... Jing Tao

03:10 PM Bug #3135: semantic type and class params need special handling in doc window

Fixed this by adding an exclusion list to the configuration. the docviewer can now take a list of attribute names no... Chad Berkley

03/17/2008

05:32 PM Bug #3107: http links don't work: Unsupported file type or connection not supported

I agree that ptolemy.actor.gui.BrowserLauncher is somewhat sketchy.
However, it works fine for me under Ptolemy and f... Christopher Brooks

04:47 PM Bug #3107: http links don't work: Unsupported file type or connection not supported

Chad,
The BareBoneBrowserLaunch you reference in http://www.centerkey.com/java/browser/ is already in Kepler. Che... Dan Higgins

02:35 PM Bug #3107: http links don't work: Unsupported file type or connection not supported

This looks like a bug in the somewhat sketchy class ptolemy.actor.gui.BrowserLauncher. This class was written in 200... Chad Berkley

01:59 PM Bug #3107: http links don't work: Unsupported file type or connection not supported

I've been looking into this and it appears to be a problem on windows and linux but not OSX. The BrowserEffigy$Facto... Chad Berkley

01:33 PM Bug #3036: Need to be able to delete actors from the library

There is now a right click menu item to remove a component from the library. It removes the component from the cache... Chad Berkley