Activity
From 04/27/2010 to 05/26/2010
05/26/2010
- 03:08 PM Bug #4985: problem with workflows using Rexpression on Windows XP
- i'll try to make 64 bit libs for JRI
- 02:16 PM Bug #4985: problem with workflows using Rexpression on Windows XP
- Fixed the 2 workflows, and tested on 2.0 and trunk on mac, and 2.0 on XP, and they work. I'm going to move the concer...
- 02:12 PM Bug #4985: problem with workflows using Rexpression on Windows XP
- (In reply to comment #5)
> (In reply to comment #1)
>
> 2. The RExpression2 (JRI-based) actor will fail if the libs ... - 01:51 PM Bug #4985: problem with workflows using Rexpression on Windows XP
- (In reply to comment #1)
1. Derik will change the workflows to point to the DEMODIR path.
2. The RExpression2 (JRI-... - 02:41 PM Bug #5025: Couldn't run the workflows 00-StatisticalSummary and 08-CommandLine_2
- (In reply to comment #10)
> (In reply to comment #9)
> > (In reply to comment #8)
> > > (In reply to comment #7)
> > ... - 12:39 PM Bug #5025: Couldn't run the workflows 00-StatisticalSummary and 08-CommandLine_2
- I agree that we should close this bug. I am gong to do so, but if anyone has any objections, feel free to re-open it....
- 02:20 PM Bug #5030 (New): RExpression2 actor will fail if the libs are not found
- Creating a new bug from discussion originating in bug#4985, relevant sections posted below:
Jianwu said:
I also t... - 01:35 PM Bug #4972: Write documentation for workflow-run-manager module
- done
- 01:34 PM Bug #5014: Add documentation to resources for the Workflow Run Manager module
- done
05/25/2010
- 06:55 PM Bug #5025: Couldn't run the workflows 00-StatisticalSummary and 08-CommandLine_2
- (In reply to comment #9)
> (In reply to comment #8)
> > (In reply to comment #7)
> > > Error message about R not bein... - 05:52 PM Bug #5025: Couldn't run the workflows 00-StatisticalSummary and 08-CommandLine_2
- (In reply to comment #8)
> (In reply to comment #7)
> > Error message about R not being on path should properly show ... - 04:27 PM Bug #5025: Couldn't run the workflows 00-StatisticalSummary and 08-CommandLine_2
- (In reply to comment #7)
> Error message about R not being on path should properly show now on trunk at
> r24573 and ... - 04:23 PM Bug #5025: Couldn't run the workflows 00-StatisticalSummary and 08-CommandLine_2
- Error message about R not being on path should properly show now on trunk at r24573 and 2.0 at r24576. Leaving open f...
- 12:01 PM Bug #5025: Couldn't run the workflows 00-StatisticalSummary and 08-CommandLine_2
- After adding R to my PATH these workflows work for me as well. I'm going to take a look at the RExpression actor to s...
- 10:38 AM Bug #5025: Couldn't run the workflows 00-StatisticalSummary and 08-CommandLine_2
- After adding R into the path, those two workflows work.
So we have to make sure R was added into the path on my wind... - 10:27 AM Bug #5025: Couldn't run the workflows 00-StatisticalSummary and 08-CommandLine_2
- It seems that R is not in the path.
C:\Users\tao>R --no-save
'R' is not recognized as an internal or external comman... - 04:25 PM Bug #4985: problem with workflows using Rexpression on Windows XP
- Infinite loop problem is fixed and error message about R not being on path should properly show now on trunk at r2457...
- 02:26 PM Bug #5022: 2.0-RC3 Windows installer creates Kepler 2.0-RC2 start menu choice, not Kepler 2.0-RC3
- I am re-opening this bug. Testing reveals that this is not fixed yet.
- 12:50 PM Bug #5013: Add documentation to resources for Tagging module
- Done.
- 12:49 PM Bug #4971: Write documentation for tagging module
- Wrote documentation and committed a PDF to trunk and branch and a Word docx to kepler-docs.
- 11:52 AM Bug #4869: changes made to workflows during dialogs before committing (Edit Parameters/Cancel)
- Sean Riddle posted bug 5029, which is a duplicate of this bug, so I closed 5029
Below is post:
> 1) Double-click on ... - 11:50 AM Bug #5029: Parameter changes can be committed without clicking the commit button
- This is a duplicate of 4869. Fixing this before Kepler-2.0 is not
advised as the problem involves modal dialogs. A ... - 11:25 AM Bug #5029 (Resolved): Parameter changes can be committed without clicking the commit button
- 1) Double-click on an actor and change a parameter.
2) Click the add button to trigger the "add parameter" dialog
3...
05/24/2010
- 07:12 PM Bug #5026: Error dialog pop up in RC3 when closing the ImageJ window after workflow execution.
- This should be fixed.
I will need a person with a Windows machine to re-download the RC3 installer (which has chang... - 05:10 PM Bug #5026: Error dialog pop up in RC3 when closing the ImageJ window after workflow execution.
- I think I have figured out what was causing this. It appears to be an incorrect path in the workflow. I have updated ...
- 10:16 AM Bug #5026: Error dialog pop up in RC3 when closing the ImageJ window after workflow execution.
- I re-tested it. In my Windows 7 64 bit machine, the failure does *not* occur if I start Kepler using right-click menu...
- 09:42 AM Bug #5026: Error dialog pop up in RC3 when closing the ImageJ window after workflow execution.
- I can reproduce this failure on a Windows 2003 machine where Kepler
was installed as admin and I'm logged in as a non... - 06:48 PM Bug #5022: 2.0-RC3 Windows installer creates Kepler 2.0-RC2 start menu choice, not Kepler 2.0-RC3
- This appears to be fixed using the latest incarnation of the RC3 installer, which I am uploading now. Closing this bug.
- 06:44 PM Bug #5020: 2.0-RC3 installer: R Kepler Module is not optional
- I agree that there is no reason to bother with this window. But it is a very minor issue and I do not think we should...
- 03:17 PM Bug #5028 (Resolved): dataturbine overwrites recent data when frequently detaching
- When disconnecting from a DT server, a source must "detach" so that any uploaded data remain persistent. However, det...
- 03:08 PM Bug #4760: software to transfer sensor data from SPAN to DT
- I've created a program to do this: util.SpanToDT.
- 02:22 PM Bug #5027: Users should be able to build installers for the Kepler-2.0 branch
- I agree and think this is a good RFE.
However, the process of creating an installer at this point has too many movi... - 10:32 AM Bug #5027 (New): Users should be able to build installers for the Kepler-2.0 branch
- Kepler users should be able to build installers so that they may deploy
a shrinkwrapped installation to other users.... - 11:46 AM Bug #5025: Couldn't run the workflows 00-StatisticalSummary and 08-CommandLine_2
- On my XP box w/ R 2.10.1:
00-StatisticalSummary - I have a different error when trying this workflow, it's described ... - 09:50 AM Bug #5025: Couldn't run the workflows 00-StatisticalSummary and 08-CommandLine_2
- I can run these demos as a non-admin user under Windows 2003 Server R2
with a Kepler-2.0-RC3 installation that was in... - 11:44 AM Bug #4985: problem with workflows using Rexpression on Windows XP
- Ben tried to replicate on his XP box, and my problem with an infinite loop in _read didn't happen to him. It's still ...
- 08:42 AM Bug #4983: cannot run kepler.sh in RC2
- The acceptance criteria to close this bug would be for
"ant startup-script"
to create a kepler/kepler.sh script th...
05/23/2010
- 10:48 PM Bug #5021: release date is wrong in installer readme
- Fixed in the latest incarnation of the RC3 installer.
- 09:30 PM Bug #4983: cannot run kepler.sh in RC2
- Should I close this bug?
- 09:29 PM Bug #4994: ant installer fails with "Invalid directory 'dir' ... outreach-2.0.0/resources"
- Running "ant" to list the commands no longer lists the ant installer command. Closing this bug.
- 09:28 PM Bug #4997: SEEK/garpModel_ImageJ.xml has an exception while opening
- The maintainer of this workflow is going to need to fix this. I have fixed the paths and put in different names to av...
- 08:51 PM Bug #5025: Couldn't run the workflows 00-StatisticalSummary and 08-CommandLine_2
- Hmm... this isn't a problem for me with my Mac running R 2.10.1. Who else can reproduce this?
- 08:47 PM Bug #5026: Error dialog pop up in RC3 when closing the ImageJ window after workflow execution.
- I am unable to reproduce this error on my mac. Who can reproduce this?
05/21/2010
- 01:05 AM Bug #4524: no prompt to save a changed report
- The steps I'm taking are as described in comment#7. Yes, this happens in 2.0 as well. If it's not happening for you, ...
05/20/2010
- 09:20 PM Bug #3072: Security issues with distributed execution
- It is fixed at version 24539. When a slave is started using startWithExecutionPolicy command, it will use master-slav...
- 08:33 PM Bug #4524: no prompt to save a changed report
- I am still not seeing the behavior that you describe. This was however, a behavior that was present in a previous ve...
- 04:42 PM Bug #4524: no prompt to save a changed report
- Things still behave as described in comment7 at r24535 in reporting trunk for me, on both os X and windows XP.
- 11:55 AM Bug #4524: no prompt to save a changed report
- Revision 24531 is the most recent, I have updated the files in both trunk and in the 2.0 branch. In this revision. De...
- 11:18 AM Bug #4524: no prompt to save a changed report
- This is at r24529 on reporting trunk. You haven't made changes post that revision that are checked in. Are you not se...
- 11:12 AM Bug #4524: no prompt to save a changed report
- Can you please tell me what revision number you have for this ? What you are describing sounds like an old version. ...
- 06:27 PM Bug #4647: Write documentation for Reporting in the style of Kepler Docs
- I made a significant number of changes and committed to r1254 in kepler-docs, and 24536 (trunk) and r 24537 (2.0). Yo...
- 02:12 PM Bug #4647: Write documentation for Reporting in the style of Kepler Docs
- O.K. that explains it. I had a local document that I used to create the document now currently named reporting.docx,...
- 11:33 AM Bug #4647: Write documentation for Reporting in the style of Kepler Docs
- The plan hasn't changed.
As mentioned, I made fixes and additions to wrp.docx (r1249). Afaik this doc only exists in... - 11:09 AM Bug #4647: Write documentation for Reporting in the style of Kepler Docs
- I would like to know what version of this you have.
Also, where in svn have you been getting your current version ... - 05:45 PM Bug #5026 (Resolved): Error dialog pop up in RC3 when closing the ImageJ window after workflow execution.
- I found it when I executed the workflow: KeplerData\Kepler-2.0-Demos\demos\getting-started\03-ImageDisplay.xml on Win...
- 03:21 PM Bug #5025 (Resolved): Couldn't run the workflows 00-StatisticalSummary and 08-CommandLine_2
- On windows vista (With R 2.9) and windows 7 (With R 2.10.1), I got the errors:
1(00-StatisticalSummary):
ptolem... - 03:01 PM Bug #5024 (Resolved): Uninstaller couldn't delete the rc3 folder on windows 7
- Uninstaller couldn't remove the rc3 folder in Program File on Windows 7 (Vista). But it can remove desktop icon and k...
- 02:28 PM Bug #4985: problem with workflows using Rexpression on Windows XP
- My problem in comment 1-- workflows using RExpression on XP never finish executing -- is still an issue in RC3 and on...
- 02:20 PM Bug #5023: The desktop icon of rc3 is a blank page on windows vista
- bug #5023 is a duplicate of bug #5022
- 02:03 PM Bug #5023: The desktop icon of rc3 is a blank page on windows vista
- This happens on windows xp as well. Also, the icon and start menu call it RC2 rather than rc3.
- 02:00 PM Bug #5023 (Resolved): The desktop icon of rc3 is a blank page on windows vista
- The icon is a blank page on windows. It was a issue on rc2 as well.
- 01:09 PM Bug #4983: cannot run kepler.sh in RC2
- This works for me:
--start--
#!/bin/sh -x
# This script starts Kepler.
# Run with -h to see all command-line option... - 04:50 AM Bug #4983: cannot run kepler.sh in RC2
- This bug is still true in RC 3. If you are in the same directory as kepler.sh or kepler.bat, it works, but if not, it...
- 12:56 PM Bug #5009: Opening two KARS that have the same Workflow, but that have different report layouts, will make the first layout refresh itself with the layout from the KAR that was opened most recently.
- I spent a bit looking into this last night. I was able to keep the report layout from refreshing in the window in whi...
- 12:52 PM Bug #5022 (Resolved): 2.0-RC3 Windows installer creates Kepler 2.0-RC2 start menu choice, not Kepler 2.0-RC3
- With the Kepler-2.0-RC3 Windows installer, the shortcut in Start->All Programs
->Kepler is Kepler 2.0-RC2, not Keple... - 12:34 PM Bug #4993: Kepler-2.0 cannot be built under windows because of apple-extensions
- Closing.
I verified that I can build the Kepler-2.0 branch under Windows Server 2003. - 12:12 PM Bug #5017: ReportLayout LSID and referral list should be maintained
- It might also be nice to see who originally created and who contributed to a report layout, esp in a 'publication kar...
- 11:55 AM Bug #5017: ReportLayout LSID and referral list should be maintained
- Hmm, I'm trying to think of how we'd use the "provenance of the report layout". I suppose that could be useful for un...
- 11:47 AM Bug #5017: ReportLayout LSID and referral list should be maintained
- They're still not NamedObjs. Unfortunately the constructor for NamedObjIdReferralList needs a NamedObj. Aaron recomme...
- 11:34 AM Bug #5017: ReportLayout LSID and referral list should be maintained
- are report layouts now NamedObjs or something?
Where is the referral list stored if not? - 11:42 AM Bug #5021 (Resolved): release date is wrong in installer readme
- change the date to the actual release date. it's set as may 12 right now.
- 11:32 AM Bug #5019: R_output_example.xml fails
- changed the workflow to use different columns (of doubles) for the array plotter input.
- 04:29 AM Bug #5019 (Resolved): R_output_example.xml fails
- The R_output_example.xml which is in /KeplerData/Kepler-2.0-Demos/demos/R/ fails to run properly.
- 10:28 AM Bug #5020 (Resolved): 2.0-RC3 installer: R Kepler Module is not optional
- When installing Kepler-2.0-RC3, I'm presented with
two choices:
Kepler
R Kepler Module
Both are required, I can... - 09:03 AM Bug #4994: ant installer fails with "Invalid directory 'dir' ... outreach-2.0.0/resources"
- In the Kepler-2.0 tree.
Running "ant" yields
[exec] installer Builds the Kepler installe... - 04:35 AM Bug #4994: ant installer fails with "Invalid directory 'dir' ... outreach-2.0.0/resources"
- At this point, building installers is meant for releases. Later on, I would like to automate the entire install proce...
- 04:44 AM Bug #4984: user mailing list is wrong
- The mailing list on the installer is now correct. The date is off, saying May 12 instead of May 20. However, rebuildi...
- 04:40 AM Bug #4987: RC2 cannot find R pkg
- R is no longer installed, but must be installed manually.
If a workflow that depends on R fails because R is not pre... - 04:38 AM Bug #4991: Kepler-2.0-RC2 fails to start for a non-admin user after admin install
- This should now work.
- 04:37 AM Bug #4992: In a shared installation, how does the user get the demo?
- The demos are now copied to the users home directory upon start-up if they are not already there.
- 04:33 AM Bug #4997: SEEK/garpModel_ImageJ.xml has an exception while opening
- This is still occurring in RC3. I think it is a problem with paths that is probably easily fixed. I will try to take ...
- 04:25 AM Bug #4996: 2.0-RC2 demos don't work
- These demos now work. There might be others that are failing under RC3, but I have tested all of the demos in getting...
- 04:22 AM Bug #5005: regular user couldn't start kepler after it was installed on windows 7
- Since published.txt and present.txt are now stored and written to the cache, this bug now should be fixed. Closing.
05/19/2010
- 04:37 PM Bug #5015: Export of runs contain different, and missing or extra reporting items now
- Closing, opened bug#5018 for issue described above.
- 04:36 PM Bug #5018 (New): Items with the same LSID show with the same name in the Components Library
- If you have two items within a KAR that have different filenames but the same LSID, they show as one item in the comp...
- 04:22 PM Bug #4969: Exported run-kar puts a roml at root of Components tree
- I can't find the replication procedure for this, or it's no longer happening. Please reopen if you see this.
- 04:09 PM Bug #4524: no prompt to save a changed report
- This doesn't work for me. If I design a workflow and report layout, save it to kar, change the report layout, and the...
- 03:58 PM Bug #4647: Write documentation for Reporting in the style of Kepler Docs
- There are many errors in this documentation. It looks like my corrections and additions to the former wrp.docx (r 124...
- 03:08 PM Bug #5017 (Resolved): ReportLayout LSID and referral list should be maintained
- When a user changes a reportLayout, its LSID revision should increment.
When a user changes a reportLayout with an L... - 02:59 PM Bug #4977: Can't associate multiple sets of reporting artifacts in one kar with different executions
- was fixed at r24481 (trunk) and r24483 (2.0). Made reporting items depend on run when exporting a run-kar, and on imp...
- 01:28 PM Bug #4281: ant update produces message about running svn cleanup
- This bug is now affecting me under Mac OS X. I've also seen it under
Windows Server 2003.
svn update yields:
[upda...
05/18/2010
- 07:04 PM Bug #5015: Export of runs contain different, and missing or extra reporting items now
- Essentially fixed in r24492 (trunk) and 24495 (2.0).
Now utilizing wrm.getSelectedRows to see if the save is for in ... - 01:47 PM Bug #5016 (Resolved): mirror dataturbine via command line
- Currently the only way to start mirroring a DT server is via the rbnbAdmin tool, which requires a GUI. A command-line...
- 01:01 PM Bug #4977: Can't associate multiple sets of reporting artifacts in one kar with different executions
- believe i have this working locally, but reporting's incrementRevision stuff needs to change a bit, esp in regard try...
05/17/2010
- 06:15 PM Bug #5015: Export of runs contain different, and missing or extra reporting items now
- Partially fixed. Now, when exporting a run kar from WRM, you'll consistently get items like in "2nd export" listed ab...
- 11:55 AM Bug #5015 (Resolved): Export of runs contain different, and missing or extra reporting items now
- After the changes to roll ROML lsids with changes, the first export of a run kar contains less items than the second ...
- 03:37 PM Bug #4647: Write documentation for Reporting in the style of Kepler Docs
- This documentation for the WRP suite, now renamed 'Reporting' suite is now finished.
- 01:56 PM Bug #4973: Save Archive sometimes saves more or less than it should in WRP
- fixed in r24456 and r24457
- 12:22 PM Bug #4973: Save Archive sometimes saves more or less than it should in WRP
- This is happening again. To replicate: create a simple workflow and report, run it, export the run to a kar. Then Fil...
- 12:28 PM Bug #4969: Exported run-kar puts a roml at root of Components tree
- This can happen again, though the replication procedure is different now (and i'm not sure what it is yet).
- 12:07 PM Bug #5009: Opening two KARS that have the same Workflow, but that have different report layouts, will make the first layout refresh itself with the layout from the KAR that was opened most recently.
- Retargeting - this seems like something we should fix for wrp-2.0. It's possible to open a KAR, redesign the report, ...
- 11:11 AM Bug #5014 (Resolved): Add documentation to resources for the Workflow Run Manager module
- Add resources > documentation into svn, and then place the workflow-run-manager documentation there. Documentation n...
- 11:10 AM Bug #5013 (Resolved): Add documentation to resources for Tagging module
- Add resources > documentation into svn, and then place the tagging documentation there. Documentation needs to be na...
05/15/2010
- 11:18 AM Bug #5012: highlighted OK button in 'Annimate at runtime ...' menu item does not work.
- Just to be clear, the problem here is that when a dialog comes up and the
user immediately hits the "Return/Enter" k... - 10:59 AM Bug #5012: highlighted OK button in 'Annimate at runtime ...' menu item does not work.
- Attached is a test that uses JOptionPane that closes when the user hits "Return".
05/14/2010
- 05:38 PM Bug #5012 (New): highlighted OK button in 'Annimate at runtime ...' menu item does not work.
- This bug is reported by a scientist user.
Under tools select 'Annimate at runtime...', it will ask you to for the ... - 04:56 PM Bug #4988: Instantiating a wf as a composite that has a tag doesn't work as expected
- pushing to wrp-modules-2.X.Y as discussed in last call
- 04:52 PM Bug #4745: load & save site layout to metacat
- uploading site layouts should be similar to the existing functionality that uploads workflows to the repository.
- 02:55 PM Bug #5009: Opening two KARS that have the same Workflow, but that have different report layouts, will make the first layout refresh itself with the layout from the KAR that was opened most recently.
- This is because there can be multiple KARS that depend upon the same workflow, but have been saved with different rep...
- 02:24 PM Bug #4896: When exporting multiple runs only 1 ROML is placed in KAR
- I was getting to that, should have left the bug open though until it was done.
Now is complete. lsid's changing after... - 02:05 PM Bug #5010: 2.0 branch fails to launch on XP - tries to compile apple-extensions-2.0
- fixed in trunk and 2.0 branch.
I changed osextensions.txt to use semicolon instead of newlines to separate classes. ... - 11:21 AM Bug #5010: 2.0 branch fails to launch on XP - tries to compile apple-extensions-2.0
- This is a newline issue again on osextension.txt. If I use Notepad to change the newlines both classes specified are ...
05/13/2010
- 06:29 PM Bug #5010: 2.0 branch fails to launch on XP - tries to compile apple-extensions-2.0
- reporting trunk at r24422 is launching fine. Seems like maybe just an issue in 2.0 branch...
- 06:20 PM Bug #5010: 2.0 branch fails to launch on XP - tries to compile apple-extensions-2.0
- This should block Release Candidate 3.
- 06:11 PM Bug #5010 (Resolved): 2.0 branch fails to launch on XP - tries to compile apple-extensions-2.0
- I did a fresh checkout of 2.0 on windows XP, and I'm getting this compilation issue:
C:\kepler.modules.20\build-... - 04:54 PM Bug #4956: make sure matlab works with installed version of kepler 2.0
- thanks. Fixing this for 64-bit Windows needs to get mingwdl.sh script 64 bit windows and update configure.in. The wor...
- 04:48 PM Bug #4956: make sure matlab works with installed version of kepler 2.0
- Thanks, I merged in that updated version of configure.in and configure
into the trunk and the 8.0 release branch.
I... - 04:34 PM Bug #4956: make sure matlab works with installed version of kepler 2.0
- Hi Christopher, thanks a lot for your update.
I tried it on 64 bit mac and 64 bit windows. As I expected, it works o... - 04:35 PM Bug #4896: When exporting multiple runs only 1 ROML is placed in KAR
- Don't forget changing textfields, title, images, or Properties - when I make changes to these things the ROML LSID do...
- 01:39 PM Bug #4896: When exporting multiple runs only 1 ROML is placed in KAR
- Report Layout lsid's are now changed whenever a report layout is modified.
- 02:54 PM Bug #5006: create and copy demo dir directory into KeplerData on startup if doesn't exist
- fixed at r24398(2.0) and r24396 (trunk).
- 02:54 PM Bug #4986: Problem with property DEMODIR on Windows XP
- fixed at r24398(2.0) and r24396 (trunk)
- 01:54 PM Bug #5009 (Resolved): Opening two KARS that have the same Workflow, but that have different report layouts, will make the first layout refresh itself with the layout from the KAR that was opened most recently.
- If you open two KARS associated with the same Workflow, but that have different report layouts, the report layout is ...
- 01:40 PM Bug #4910: Test module installation system
- I think that this has been resolved. So closing for now, unless there are any objections.
- 01:37 PM Bug #4524: no prompt to save a changed report
- They are now prompted to save, and if they answer yes, their work is saved to a KAR.
05/12/2010
- 05:47 PM Bug #4956: make sure matlab works with installed version of kepler 2.0
- This bug is closed, but I just thought I'd update the situation.
I was able to build a 32 bit ptmatlab.dll using Min... - 04:46 PM Bug #4915: PortParameters instantiated from Outline tab cannot be deleted
- Aha!
I can replicate the bug.
Yay!
And the change to ParameterPort is required.
I'll close this now. - 04:41 PM Bug #4915: PortParameters instantiated from Outline tab cannot be deleted
- I'm somewhat mystified here. I tried building with a clean tree
and I still can't completely replicate this.
There ... - 04:32 PM Bug #4915: PortParameters instantiated from Outline tab cannot be deleted
- I should say that that's what the bug *was*. It currently doesn't happen since aaron added the nonDraggable parameter.
- 04:28 PM Bug #4915: PortParameters instantiated from Outline tab cannot be deleted
- Hey Christopher,
I think our wires are still crossed. The bug is that when you have a PortParameter on canvas, and yo... - 04:24 PM Bug #4915: PortParameters instantiated from Outline tab cannot be deleted
- With these two lines commented in ParameterPort constructor:
//Parameter notDraggable = new Parameter(this,"_... - 04:16 PM Bug #4915: PortParameters instantiated from Outline tab cannot be deleted
- Hi Derik,
I still can't reproduce this.
Can you try it from a clean tree?
Note that "ant run" and "ant compile" *do ... - 04:15 PM Bug #4915: PortParameters instantiated from Outline tab cannot be deleted
- If the Dot is highlighted, I can delete the entire Port Parameter.
- 04:06 PM Bug #4915: PortParameters instantiated from Outline tab cannot be deleted
- The arrow is highlighted. It is not removed both with and without the changes to
ParameterPort - 04:02 PM Bug #4915: PortParameters instantiated from Outline tab cannot be deleted
- Both Arrow and Dot are highlighted and both are removed.
- 03:14 PM Bug #4915: PortParameters instantiated from Outline tab cannot be deleted
- Hey Christopher,
I just commented out these two lines in ParameterPort's constructor (which I believe is essentially... - 04:42 PM Bug #5005: regular user couldn't start kepler after it was installed on windows 7
<jing> now i will install rc1 as admin, then run it as regular user.
<jing> to see what will happen.
<davidwelker> o...- 04:09 PM Bug #5005: regular user couldn't start kepler after it was installed on windows 7
- I changed the permission of the files present.txt and published.txt for regular user: adding write permission. Then i...
- 04:03 PM Bug #5005: regular user couldn't start kepler after it was installed on windows 7
- Here is the error message i got:
C:\Program Files\Kepler-2.0-RC2>kepler.bat
Exception in thread "main" java.io.FileN... - 12:19 PM Bug #5005 (Resolved): regular user couldn't start kepler after it was installed on windows 7
- Jianwu, can you start the kepler on windows 7. I can installed it successfully.
But it can't be started.
Last tim... - 02:24 PM Bug #5008 (Resolved): Research Copyrights before 2.0.0 release.
- I need to review all the copyrights for each module before the release. Also, I want to research the implications of ...
- 02:14 PM Bug #4896: When exporting multiple runs only 1 ROML is placed in KAR
- Have LSID revision number incrementing now. However, if the user opens a saved archive, and then opens a different sa...
- 02:09 PM Bug #4524: no prompt to save a changed report
- There is a prompt showing up now, but still need to add the save if they answer yes.
- 12:25 PM Bug #5006 (Resolved): create and copy demo dir directory into KeplerData on startup if doesn't exist
- Right now the installer does this - we decided to remove this from the installer, and do it during kepler startup ins...
- 11:55 AM Bug #4995: ant installer fails under Linux
- If "ant help" reports an ant target, then users will run it.
Someone already was running "ant installer" on what look...
05/11/2010
- 05:01 PM Bug #4938: Reporting suite no longer works on its own
- should be fixed in trunk and 2.0.
reporting is the "new wrp" and depends on workflow-run-manager now, and the wrp s... - 10:50 AM Bug #4533: printing from the report viewer prints the workflow editor content
- retargeting to post-2/wrp
This would be part of an entire Kepler UI redesign.
save for later as open...
05/10/2010
- 11:51 PM Bug #4982: NPE when starting with no network
- Fixed.
- 04:13 PM Bug #4998: DataTurbine actor instantiation problem
- fixed in r24320 (trunk) and r24321 (2.0)
- 12:53 PM Bug #4998 (Resolved): DataTurbine actor instantiation problem
- Sometimes the DataTurbine actor gives an error during instantiation -- this will typically happen if you save a workf...
- 02:12 PM Bug #4938: Reporting suite no longer works on its own
- Thanks for the offer David, but I'm going to try to get Reporting working on its own again hopefully doing away with ...
- 02:01 PM Bug #4938: Reporting suite no longer works on its own
- Thanks for the offer David, but I'm going to try to get Reporting working on its own again hopefully doing away with ...
- 02:12 PM Bug #4896: When exporting multiple runs only 1 ROML is placed in KAR
- It seems like this may also cause problems when there are two different ROMLs in different KARs in your local reposit...
05/09/2010
- 10:18 PM Bug #4996: 2.0-RC2 demos don't work
- It looks like a version change from 2.0 to 2.0.0 is causing problems.
I removed my KeplerData directory and installed... - 09:55 PM Bug #4996 (Resolved): 2.0-RC2 demos don't work
- 10:14 PM Bug #4997 (Resolved): SEEK/garpModel_ImageJ.xml has an exception while opening
- In Kepler-2.0-RC2,
SEEK/garpModel_ImageJ.xml has an exception while opening
ptolemy.kernel.util.NameDuplication... - 09:57 PM Bug #4995: ant installer fails under Linux
- Is the "ant installer" command even supposed to work under Linux? I was under the impression that this command was in...
- 05:15 PM Bug #4995 (In Progress): ant installer fails under Linux
- In a clean Kepler 2.0 tree, "ant installer" fails under linux:
build-macapp:
[echo] jarbunder
[null... - 09:34 PM Bug #4990: Ptolemy documentation missing
- Fixed!
It turns out that the links in the ptII/doc/mainVergilPtinyKepler.htm file were
incorrect. I added some test... - 05:12 PM Bug #4003: Support for non-GUI Kepler installer.
- One workaround for this is to have IzPack use
<panel classname="FinishPanel"/>
instead of
<panel classname="Simple...
05/07/2010
- 08:15 PM Bug #4994: ant installer fails with "Invalid directory 'dir' ... outreach-2.0.0/resources"
- Until I can build an installer, I can't fix bug #4990.
- 08:14 PM Bug #4994 (Resolved): ant installer fails with "Invalid directory 'dir' ... outreach-2.0.0/resources"
- Working from the instructions at
https://kepler-project.org/developers/teams/build/building-kepler-installers
and u... - 08:03 PM Bug #4281: ant update produces message about running svn cleanup
- I was just bitten by this bug again.
The problem is that under Windows, if build-area gets updated by someone
else, t... - 06:47 PM Bug #4993 (Resolved): Kepler-2.0 cannot be built under windows because of apple-extensions
- The instructions at
https://kepler-project.org/developers/teams/build/systems/build-system/extension-build-system
f... - 06:43 PM Bug #4992 (Resolved): In a shared installation, how does the user get the demo?
- The intro screen says
"All listed demos are in the KeplerData/Kepler-2.0.Demos/getting-started which can be found ... - 06:39 PM Bug #4991 (Resolved): Kepler-2.0-RC2 fails to start for a non-admin user after admin install
- I installed Kepler as admin under Windows 2003 and the installation works
fine.
If I try to start Kepler as a non-a... - 06:21 PM Bug #4977: Can't associate multiple sets of reporting artifacts in one kar with different executions
- Changing the title of this bug and adding dependency.
To reiterate - if it were possible to make a KAR with multipl... - 06:18 PM Bug #4990 (Resolved): Ptolemy documentation missing
- The Kepler-2.0-RC2 installer does not include files like ptII/doc/expression.pdf
To see this
1) start up Kepler, ... - 06:09 PM Bug #4973: Save Archive sometimes saves more or less than it should in WRP
- Can't get this to happen anymore, closing.
- 05:59 PM Bug #4987: RC2 cannot find R pkg
- The Mac installer (https://code.kepler-project.org/code/kepler/releases/installers/Kepler-2.0-RC2-osx.jar) could not ...
- 02:32 PM Bug #4987: RC2 cannot find R pkg
- Same thing happened to me.
- 02:01 PM Bug #4987 (Resolved): RC2 cannot find R pkg
- The RC2 installer can't find the R pkg: it's looking in r-2.0 but should be r-2.0.0.
- 05:56 PM Bug #4989 (Resolved): The installer should offer to start Kepler
- The installer should offer to start Kepler upon completion so that
the user does not have to go digging for it.
See... - 05:45 PM Bug #4984: user mailing list is wrong
- Also, we should be very precise about the version.
The installer intro screen says
Kepler 2.0 RC2
but when I install... - 05:40 PM Bug #4984: user mailing list is wrong
- Also, the date in the installer is wrong, it says "April 29, 2010".
- 10:41 AM Bug #4984: user mailing list is wrong
- The intro in the installer says:
User discussion mailing list: kepler-dev@ecoinformatics.org - 10:39 AM Bug #4984 (Resolved): user mailing list is wrong
- 05:44 PM Bug #4978: Create additional 'module' property for any menu entries that are inserted by non-core modules
- The configuration system already has a mechanism to remove properties when the module that added them is no longer pr...
- 05:28 PM Bug #4988 (Resolved): Instantiating a wf as a composite that has a tag doesn't work as expected
- If I have a workflow, drag a composite onto canvas, open the composite and tag it, then close the composite, I see th...
- 05:05 PM Bug #4943: RC5 Installer Tracking Bug
- Hi Jing, I agree with you. Normally users do not use 'run as administrator' much.
- 04:59 PM Bug #4943: RC5 Installer Tracking Bug
- Yep, if I right click the icon and choose "Run as the Administrator", kepler will start. RC1 doesn't need this. I thi...
- 03:58 PM Bug #4943: RC5 Installer Tracking Bug
- Jing, I have to right click the icon and use 'Run as administrator', or start cmd using 'Run as administrator' and ex...
- 03:41 PM Bug #4943: RC5 Installer Tracking Bug
- Jianwu, can you start the kepler on windows 7. I can installed it successfully. But it can't be started.
Last time, ... - 03:19 PM Bug #4943: RC5 Installer Tracking Bug
- On window 7, kepler desktop icon us a blank page.
- 11:57 AM Bug #4943: RC5 Installer Tracking Bug
- It works when I installed it in Windows 7 64 bit. One only issue I found is that the generated desktop icon is not Ke...
- 04:53 PM Bug #4524: no prompt to save a changed report
- This dialog also comes up in at least two cases when it shouldn't:
1) don't have a report design underway
2) when cha... - 02:06 PM Bug #4985: problem with workflows using Rexpression on Windows XP
- I found two workflows can not be executed on Windows 7 64 bit: Kepler-2.0.0-Demos\demos\R\r-2.0.0\demos\R\localFile_t...
- 01:31 PM Bug #4985 (Resolved): problem with workflows using Rexpression on Windows XP
- On Windows XP workflows using RExpression don't finish execution. This happens in RC2 and wrp trunk on XP, the consol...
- 01:36 PM Bug #4986 (Resolved): Problem with property DEMODIR on Windows XP
- On Windows XP I have problems with workflows that have paths like 03-ImageDisplay.xml. I think this is an issue with ...
- 12:03 PM Bug #4938: Reporting suite no longer works on its own
- If reporting is no longer working independently, it should be converted from a suite to an ordinary module. That invo...
- 11:16 AM Bug #4938: Reporting suite no longer works on its own
- I think it would be really optimal to have Reporting work on its own when we release wrp-2.0. This would be more cons...
- 09:25 AM Bug #4938: Reporting suite no longer works on its own
- Hi Derik,
I see that you were working on this, are we intending to do take the steps you described in your last comm... - 11:37 AM Bug #4956: make sure matlab works with installed version of kepler 2.0
- works for me on 32 bit linux. closing the bug.
- 11:06 AM Bug #4956: make sure matlab works with installed version of kepler 2.0
- works for me on 32 bit mac and windows with RC2
- 11:10 AM Bug #4983: cannot run kepler.sh in RC2
- This works if kepler.sh/bat is in the current directory.
- 10:08 AM Bug #4983 (Resolved): cannot run kepler.sh in RC2
- # /Applications/Kepler-2.0-RC2/Kepler.app/Kepler/kepler.sh
Exception in thread "main" java.lang.NoClassDefFoundErro... - 09:43 AM Bug #4982 (Resolved): NPE when starting with no network
- NPE when starting with no network:
[run] Exception in thread "main" java.lang.NullPointerException
[r...
05/06/2010
- 04:33 PM Bug #4981 (In Progress): RIO pdfs don't show up in the Component Library
- If you create a workflow and a simple report, execute, export the run to a local repository, then expand the kar in t...
- 04:31 PM Bug #3976: Update Documentation for 2.0 release
- Unless anyone has any objections, I am now closing this bug.
- 03:08 PM Bug #4956: make sure matlab works with installed version of kepler 2.0
- re-assign to Jianwu
- 02:03 PM Bug #4973: Save Archive sometimes saves more or less than it should in WRP
- The issues wrt entire additional sets of run and reporting artifacts should be fixed now.
The issue of Save Archive s... - 02:02 PM Bug #4976: Importing run archive from a different namespace is broken
- fixed in r24244 (trunk) and r24246 (2.0).
- 12:10 PM Bug #4980: Tagging a run now creates two identical tags in the GUI
- Fixed in r24242 on trunk and r24243 on branch.
05/05/2010
- 05:44 PM Bug #4980 (Resolved): Tagging a run now creates two identical tags in the GUI
- Sean is able to replicate this at r24224. If you tag a run in the WRM, two gui tag labels show up instead of one.
- 12:28 PM Bug #4977: Can't associate multiple sets of reporting artifacts in one kar with different executions
- Made that change, so artifacts are being inserted, but leaving this bug open since this procedure won't work for run-...
- 12:22 PM Bug #4979: ROML has type of ReportInstance instead of ReportLayout in kar manifest
- discussed with Ben, the ReportLayout is a ReportInstance during open, so for reference, we decided the best soln was ...
- 11:05 AM Bug #4966: Make simple GUI mods for module manager
- This is done for the 2.0 release. May be revisited after that.
05/04/2010
- 07:11 PM Bug #4979 (Resolved): ROML has type of ReportInstance instead of ReportLayout in kar manifest
- E.g.:
Name: Unnamed1_ROML.xml
dependsOnModule: reporting
handler: org.kepler.kar.handlers.ReportLayoutKAREntryHa... - 05:21 PM Bug #4978 (In Progress): Create additional 'module' property for any menu entries that are inserted by non-core modules
- As of revision r24221 and r24222-3 on the branch, there's a way to avoid those errors that look like:
[run] ... - 05:00 PM Bug #4977 (Resolved): Can't associate multiple sets of reporting artifacts in one kar with different executions
- Reporting artifacts from imported runs are no longer being put into provenance since reporting attributes are no long...
- 02:13 PM Bug #4976 (Resolved): Importing run archive from a different namespace is broken
- When you import a run, the run's execId is set to the next available execId, and we attempt to increment the run's re...
- 01:38 PM Bug #4969: Exported run-kar puts a roml at root of Components tree
- fixed in r24213 (trunk) and r24214 (2.0)
- 10:34 AM Bug #4928: Clean up kepler-project.org KAR files
- I backed up the kepler database as kepler_backup_05042010 under /var/lib/pgsql/backups. Then the left actors were del...
05/03/2010
- 06:01 PM Bug #4974 (Resolved): ant run and ant force-ptolemy fail to compile an updated file
- In the devel tree, if I update a Ptolemy java file, then "ant run"
and "ant force-ptolemy" fail to compile the file.... - 05:25 PM Bug #4915: PortParameters instantiated from Outline tab cannot be deleted
- Hey Christopher, this bug was specific to the (new-ish) Outline tab, not the Components tab. Before it was made non-d...
- 04:17 PM Bug #4915: PortParameters instantiated from Outline tab cannot be deleted
- The executive summary is that I can't reproduce this bug before the change to ParameterPort. Is the change to Parame...
- 05:06 PM Bug #4970: Make non-instantiable items in local KARs not draggable
- Fixed in r24155-6 and r24157 on the branch.
Objects that are cached are given a cache category, which is an enumerat... - 01:14 PM Bug #4970 (Resolved): Make non-instantiable items in local KARs not draggable
- Items in KARs that are not instantiable should not be draggable. The tree model needs to be constructed with these Na...
- 04:40 PM Bug #4973 (Resolved): Save Archive sometimes saves more or less than it should in WRP
- When running the WRP suite, if you create a workflow and a report design(roml), File => Save Archive should save the ...
- 01:18 PM Bug #4972 (Resolved): Write documentation for workflow-run-manager module
- Debi will try to fwd Sean and I documentation outlines to fill in.
- 01:15 PM Bug #4971 (Resolved): Write documentation for tagging module
- n/t
- 01:14 PM Bug #4928: Clean up kepler-project.org KAR files
- I tried to open those actors downloaded from the repository on Kepler 1.0. But none of them succeeded. I talked with ...
04/30/2010
- 05:33 PM Bug #4968: Could not validate generated KAR file for uploading to repository
- Close it. If Sean finds an issue on his testing, this bug will be reopened.
- 04:31 PM Bug #4968: Could not validate generated KAR file for uploading to repository
- During the generating the children elements of mainAttribute, kepler iterated a Set object to get names and values. H...
- 02:13 PM Bug #4968: Could not validate generated KAR file for uploading to repository
- The xml looks like:
<mainAttributes>
<KAR-Version>2.0</KAR-Version>
<Manifest-Version>1.4.2</Manifest-Version>
<mo... - 02:05 PM Bug #4968 (Resolved): Could not validate generated KAR file for uploading to repository
- I created a KAR file by doing the following:
1) Instantiate:
* An SDF director (iterations=1)
* A StringCons... - 04:56 PM Bug #4969: Exported run-kar puts a roml at root of Components tree
- Also the RIO.1.xml and RIO.1.pdf don't show up in the gui inside the KAR. This is a regression.
Also I'm not sure why... - 02:12 PM Bug #4969 (Resolved): Exported run-kar puts a roml at root of Components tree
- If you create a workflow and a report, run, export the run, you end up with a roml at the root level of your Componen...
- 02:47 PM Bug #4967: Disallow dragging romls, workflowRuns, etc onto canvas
- Hey Sean, you're right, the run in a remote kar isn't draggable. The bug happens for me for run-kars saved in a local...
- 02:24 PM Bug #4967: Disallow dragging romls, workflowRuns, etc onto canvas
- I'm at the trunk of the wrp suite, and I can't reproduce this. I did a search for "run2-mclaughlin" on the keplerdev ...
- 01:51 PM Bug #4967 (Resolved): Disallow dragging romls, workflowRuns, etc onto canvas
- You can currently try to drag these items out to canvas, resulting in an error. I thought these were _notDraggable at...
- 01:46 PM Bug #4957: Tags are not visible under Java 1.6
- Fixed in r24151 and in r24152 in the branch.
- 09:25 AM Bug #4928: Clean up kepler-project.org KAR files
- Their names are listed for these KAR files because they were in the documentation of the uploaded kar. It may be tha...
- 09:13 AM Bug #4928: Clean up kepler-project.org KAR files
- The files that have "jie liu", "edward a lee" and "Yuhong Xiong" are likely
duplicated file from the ptII repository.... - 08:47 AM Bug #4910: Test module installation system
- Is the module installation system tested when I run "ant test" and as part
of the nightly build? - 08:16 AM Bug #4910: Test module installation system
- Module system testing confirms that it is working well, and in the process of testing we also decided to make a few s...
- 08:35 AM Bug #4966: Make simple GUI mods for module manager
- These changes have been made, and I am closing this bug for now.
- 08:34 AM Bug #4966 (Resolved): Make simple GUI mods for module manager
- Make the following modifications to the GUI of the module manager as discussed with Matt, David, and Chad.
1.) Hid...
04/29/2010
- 09:21 PM Bug #4915: PortParameters instantiated from Outline tab cannot be deleted
- Added the "_notDraggable" parameter to the ParameterPort class constructor so PTree will not allow you to drag it to ...
- 06:23 PM Bug #4965: Create and use configuration parameter for writing run-kars
- fixed in r24099 and r24100
- 05:33 PM Bug #4965 (Resolved): Create and use configuration parameter for writing run-kars
- Let user enable the writing of resultant run-kar files into KeplerData/workflow-runs/ by changing a configuration par...
- 06:16 PM Bug #4928: Clean up kepler-project.org KAR files
- wrote a program to delete the kar files except the following ones. I am waiting people's response.
Authentication zh... - 05:29 PM Bug #4964: Provenance turns off for unsupported director, but doesn't send toggle event
- fixed now, thanks dan.
- 12:23 PM Bug #4964 (Resolved): Provenance turns off for unsupported director, but doesn't send toggle event
- If you open a model with an unsupported director in wrp, like 03-LotkaVolterra, provenance auto disables because the ...
- 04:50 PM Bug #4910: Test module installation system
- Module Manager is now working with http. Tested the switching between suites and it seems to be working well. Need ...
- 04:30 PM Bug #4956: make sure matlab works with installed version of kepler 2.0
- I made a wiki page (https://kepler-project.org/developers/teams/build/matlab-lib-build-instructions-in-kepler-for-mat...
- 02:35 PM Bug #4956: make sure matlab works with installed version of kepler 2.0
- Dan and I updated the ptmatlab.cc in ptolemy module, created the libs for Mac (32 and 64 bit), Windows (32 and 64 bit...
04/28/2010
- 05:25 PM Bug #4928: Clean up kepler-project.org KAR files
- I saw several actors are in modules that are not in Kepler 2.0 release, such as Griddles* ones are in https://code.ke...
- 05:03 PM Bug #4928: Clean up kepler-project.org KAR files
- Most of these seem like variants on existing actors. You should check if they were simply uploaded for testing purpo...
- 04:37 PM Bug #4928: Clean up kepler-project.org KAR files
- After compared, those actors are not found on the kepler local library:
Authentication
kar.454.1
actor.454.1
BlastO... - 03:40 PM Bug #4960: NPE from TableSorter when repeatedly executing a small workflow in WRP
- should be fixed in r24037 (trunk) and r24038 (2.0).
I haven't seen the error since, but leaving open for Dan to test ... - 01:26 PM Bug #4943: RC5 Installer Tracking Bug
- changing title to rc2
- 01:25 PM Bug #4681: Check all file properties before release
- updated file props for trunk and 2.0. if this is done in the future, do not update keywords for any jar files. this...
04/27/2010
- 03:34 PM Bug #4928: Clean up kepler-project.org KAR files
- Thanks Jing. Yeah, just go ahead and delete any actor that is in the local repository and the remote repository unle...
- 03:23 PM Bug #4928: Clean up kepler-project.org KAR files
- I went to the kepler repository and did a "Browse all components" action. The website showed 373 components (on 37 pa...
- 03:12 PM Bug #4075: Rework Section 6
- Accepted changes, re-edited. looks good.
- 03:07 PM Bug #4956: make sure matlab works with installed version of kepler 2.0
- Yeah, I'll wait for your changes. Let me know as soon as you get it working.
- 03:00 PM Bug #4956: make sure matlab works with installed version of kepler 2.0
- Daniel and I are updating ptmatlab.cc to make it work with Mac 64 bit. It will be done in one or two days. We will te...
- 03:03 PM Bug #4936: Preferences for searching remote repositories are not maintained across runs
- Value is now written to the configuration.
- 02:00 PM Bug #4958: Tags colors are all white by default under Windows XP with Java 1.5
- Fixed in r23994-95.
- 12:16 PM Bug #4960 (Resolved): NPE from TableSorter when repeatedly executing a small workflow in WRP
- If you're in the WRP suite and repeatedly execute a workflow, this NPE sometimes occurs with each execution. WRM does...
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