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From 07/30/2012 to 08/28/2012

08/29/2012

05:23 PM Bug #5700 (Resolved): after getting an actors patch, actor changes won't be visible to user until .kepler is removed
In testing a pending patch to actors, I found my changes to an actor didn't appear in the library until .kepler was m... Derik Barseghian
05:03 PM Bug #5457: Mac OS X: Kepler.app should display module error messages in a window
I checked in a fix. Reassigning to Christopher to test. Daniel Crawl

08/28/2012

03:44 PM Bug #5587: long parameter values get replaced with scrollbar
I'm reopening since this is occurring again. The steps in comment 2 will demonstrate the problem. I verified again th... Daniel Crawl
06:18 PM Bug #5692: Values not committed to actors
There seams something to it.

Tested clicking on the Commit button in different ways;
Normal clicks - ie without hor...
Ian Ian
05:15 PM Bug #5699 (New): Change the workflow scheduler server documentation link in the workflow-scheduler-gui module
Currently the the workflow scheduler server documentation points to the svm trunk version. In the next workflow-sched... Jing Tao

08/27/2012

11:50 AM Bug #5692: Values not committed to actors
I'm so glad you were able to track it down and provide us w/ these details. If you find anything else related please ... Derik Barseghian
06:40 PM Bug #5692: Values not committed to actors
[Sorry the the delay, I only work Mon-Wed]
Due to rsi I use a pen and tablet for mouse input, the problem seams to b...
Ian Ian

08/25/2012

02:54 AM Bug #5685: data isn't always chunked properly
(The above was an example of a metadata change that didn't make it through to DT.)
(In reply to comment #4)
Derik Barseghian
02:45 AM Bug #5685: data isn't always chunked properly
Sensor actor appears to be properly setting span metadata:
[run] SpanControl.setMetadataForSensor(Batt_Volt,CR8...
Derik Barseghian
02:17 AM Bug #5685: data isn't always chunked properly
Doesn't look like trolling through the archive will be necessary. The same problem of a datapackage containing two da... Derik Barseghian
06:27 PM Bug #5685: data isn't always chunked properly
RBNB archive containing suspected missing metadata entries for various sampling rate changes. Get DT to load this, us... Derik Barseghian
06:23 PM Bug #5685: data isn't always chunked properly
I thought about this some more last week, and remembered that I saw some errors when changing sensor sampling rates f... Derik Barseghian
12:43 AM Bug #5694: Dragging from a port results in a NPE
Fixed this particular issue in reporting's WorkflowManager at r30536.
(In reply to comment #4)
> There's a new issue...
Derik Barseghian
07:35 PM Bug #5403: Improve the performance of the workflow archiving data from dataturbine to metacat
I forgot to add that the auth error was due to dc=edu instead of dc=org, when trying to save to dev2.
I committed th...
Derik Barseghian
05:49 PM Bug #5403: Improve the performance of the workflow archiving data from dataturbine to metacat
Today I did a bunch of testing of the new (archiveModified.xml -- attached) and the existing (archiveDataturbineDataT... Derik Barseghian

08/24/2012

01:58 PM Bug #5210: Focus stolen from user trying to drag components around during execution
This is still a problem on trunk: dragging around an updating sensor actor and you lose your grab on the actor when i... Derik Barseghian
01:02 PM Bug #5588: Enter and Tab behavior has changed in parameter configuration dialog
Looks good. Thanks, Patricia! Daniel Crawl
12:44 PM Bug #5598: parameters appear as white boxes instead of dots
I was able to replicate the WRM fail to Force Open issue w/ this run kar. I opened bug#5697 for it.
(In reply to com...
Derik Barseghian
10:17 AM Bug #5598: parameters appear as white boxes instead of dots
I could not get the workflow run manager to work for me under Windows.
I found https://code.kepler-project.org/code/...
Christopher Brooks
12:41 PM Bug #5697 (New): Workflow Run Manager can fail to Force Open a run kar that Kepler can
After connecting the Workflow Run Manager (2.3.0) to the kepler library and using it to download the attached run kar... Derik Barseghian
11:37 AM Bug #5485: standalone Module Manager can break Kepler app ability to startup
I'm unable to reproduce. Daniel Crawl
10:19 AM Bug #5398: Re-install of Kepler-x.y doesn't overwrite modules.txt
As discussed, new bug is create at bug 5695. close this one. jianwu jianwu
10:18 AM Bug #5695 (New): more automatic module update process.
As discussed for bug 5398, We should discuss the usability perspective of module upgrade management. Some of the proc... jianwu jianwu
08:57 AM Bug #4903: Text in attributes not rendered properly
This screenshot is of outreach/workflows/demos/Matlab/MatlabExpression.xml
when run with
ant vergil -Dmodel=outreach...
Christopher Brooks
08:53 AM Bug #4903: Text in attributes not rendered properly
Also, outreach/workflows/demos/Matlab/MatlabExpression.xml has an an
Attribute that is supposed to show the name of t...
Christopher Brooks
08:50 AM Bug #5677: SDF Iterations now defaults to AUTO
I added ptolemy.moml.filter.AddMissingParameter that will add iterations set
to 0 if it is missing from a SDFDirector...
Christopher Brooks
06:33 PM Bug #5694: Dragging from a port results in a NPE
There's a new issue on trunk related to NamedObjId: if I drag out a String Constant and configure it with a new value... Derik Barseghian

08/23/2012

04:27 PM Bug #5637: composite window size & position not always saved
I verified this is fixed for MoMLs and KARs. Thanks, Christopher! Daniel Crawl
04:20 PM Bug #5694: Dragging from a port results in a NPE
Christopher, to reproduce this revert r30498 and connect two ports.
The problem is caused by the updates in r64430 t...
Daniel Crawl
03:17 PM Bug #5694: Dragging from a port results in a NPE
I think Dan's comment was referring to a change he made at r30498. After that change I haven't been able to replicate... Derik Barseghian
03:01 PM Bug #5694: Dragging from a port results in a NPE
We can't seem to replicate this bug locally right now.
Edward checked in a fix that might help with the NPE.
I'm go...
Christopher Brooks
02:45 PM Bug #5694 (Resolved): Dragging from a port results in a NPE
Dan wrote:
--start--
The problem is related to the change listener in
org.kepler.moml.NamedObjId. When the workf...
Christopher Brooks
03:46 PM Bug #5266: Two empty boxes inside Sinewave actor and other icon problems for attributes
I've uploaded a Sinewave that is not an actor oriented composite and the
screen shot.
The problem persists.
I've re...
Christopher Brooks
12:26 PM Bug #5266: Two empty boxes inside Sinewave actor and other icon problems for attributes
Redispatching to myself so that I can create a non-Actor Oriented Class version
of Sinewave.
Christopher Brooks
12:41 PM Bug #5693 (New): decide on issuing patches so older versions of kepler can upload accessible items to Metacats > 2.0
Do we want older versions of Kepler to be able to upload easily accessible items to Metacat >2.0 repositories? If so ... Derik Barseghian
12:16 PM Bug #4903: Text in attributes not rendered properly
ModelRepaintController is not in the Kepler Library, it should be added.
ShowTypes is in the Kepler Library, but rend...
Christopher Brooks
11:48 AM Bug #5677: SDF Iterations now defaults to AUTO
One fix is to run ptolemy/domains/sdf/kernel/fixSDFIterations on the .xml file.
The real fix would be to create a fi...
Christopher Brooks
11:43 AM Bug #5677: SDF Iterations now defaults to AUTO
Matlab demo workflow needs to be fixed: top level SDF used the default 0, but now is AUTO. Daniel Crawl
11:40 AM Bug #5677: SDF Iterations now defaults to AUTO
current settings:
The 'Auto' means '1' at top level and '0' inside of a composite actor. The
'UNBOUNDED' means '0'. ...
jianwu jianwu
05:52 PM Bug #5692: Values not committed to actors
I don't see anything unusual there.
I'm running short of ideas. Are you sure you're clicking Commit and not Cancel? ...
Derik Barseghian
05:34 PM Bug #5529: Documentation for some actors such as Run Composite Actor is empty
Daniel, this bug looks fixed (thanks), so I'm closing it. Christopher Brooks
05:18 PM Bug #5529: Documentation for some actors such as Run Composite Actor is empty
I added documentation based on the javadocs to:
AddPointToSVG.xml
AlignmentEditor_Seaview.xml
ArchiveCounter.xml
Arr...
Daniel Crawl

08/22/2012

04:45 PM Bug #5188: closing workflow does not save the location change of popup display windows.
Thanks for fixing this, Christopher. I verified it's fixed for MoMLs and KARs. Daniel Crawl
10:58 AM Bug #5688: library not working in kepler trunk in windows7
I've checked in a fix. Reassigning to Derik to verify. Daniel Crawl
09:33 PM Bug #5692: Values not committed to actors
Thank you for your attention and quick turn around, alas still no joy,
re installed Kepler 2.3
uninstalled java
do...
Ian Ian
07:38 PM Bug #5692: Values not committed to actors
Yes, it's a known issue that 2.2 won't launch from its icon after installing 2.3. You can use the Kepler Module Manag... Derik Barseghian
07:05 PM Bug #5692: Values not committed to actors
Uninstalled Kepler
Re installed 2.3
Reproduced error.
Restarted
Reproduced error.
Uninstalled Kepler 2.3
instal...
Ian Ian
06:35 PM Bug #5692: Values not committed to actors
I cannot replicate. I:
- installed Kepler 2.3.0 in Windows 7
- started Kepler
- dragged out an Rexpression actor from...
Derik Barseghian
05:41 PM Bug #5692 (New): Values not committed to actors
Values not committed to actors
Open new Kepler workflow
Drag RExpression from Components tree
double click RExpr...
Ian Ian

08/20/2012

04:27 PM Bug #5691 (New): parameter choices are not saved
The choices for Parameter.addChoice() are not written when the model is saved. Daniel Crawl

08/19/2012

06:24 PM Bug #4908: actor/director/attribute .xml file documentation needs to be updated
The Kepler documentation for PN was updated in 2010 with the information on how to stop the model:
----
r23513 | bro...
Daniel Crawl

08/18/2012

04:57 PM Bug #4068: File Menu should display 5 most recently used workflows
I increased the list size to 10 and updated TextEffigy and ExpressionShellEffigy to not open KARs. Daniel Crawl
04:55 PM Bug #5280: missing command line execution for KAR files
I updated TextEffigy to not open files with binary extensions. I also updated ExpressionShellEffigy to not create a w... Daniel Crawl
04:51 PM Bug #5625: create kepler documentation for 2.4
Add new command-line options for executing KARs, redirecting display actors, etc. See the full list here: https://kep... Daniel Crawl
07:02 PM Bug #5625: create kepler documentation for 2.4
Fix references: FSM -> Modal and CT -> Continuous.
SDF default iterations is now 1.
Daniel Crawl
02:28 AM Bug #5403: Improve the performance of the workflow archiving data from dataturbine to metacat
I got the EcogridWriter changes merged into trunk, finished at r30478.
After this I tried to swap in CreateDataSetsF...
Derik Barseghian
07:46 PM Bug #5403: Improve the performance of the workflow archiving data from dataturbine to metacat
Just ran this workflow again (albeit w/ provenance on) and it took 13:54 to run, for not a great deal of data. That's... Derik Barseghian
01:14 AM Bug #5690 (New): problems with updateActorDocs
I ran into a few issues updating EcogridWriter documentation using:
./kepler.sh -updateActorDocs actors/resources/ka...
Derik Barseghian
07:44 PM Bug #5689 (New): remove configs/.../configuration.xml override
The Ptolemy Configuration MoML for Kepler is in:
common/configs/ptolemy/configs/kepler/configuration.xml
This i...
Daniel Crawl
07:41 PM Bug #5683: archiveDataturbineDataToMetacat.kar can fail with an IOException on win7 and XP
Ok, I was able to run the workflow in win7 with this change, and datasets were archived.
I did see a complaint from ...
Derik Barseghian
07:12 PM Bug #5688 (Resolved): library not working in kepler trunk in windows7
Right now the tree doesn't display properly when you launch kepler from trunk in windows7, only 1 item shows up, the ... Derik Barseghian
06:49 PM Bug #5660: ExtensionFileFilter is a duplicate of a Ptolemy class
Looks good. Thanks, Christopher. Daniel Crawl
06:49 PM Bug #5426: workflow lsid changes when running from command line
I created #5687 for 2.5. Daniel Crawl
06:48 PM Bug #5687 (New): investigate alternatives to workflow versioning
As described in bug #5426, the same workflow can be identified differently when executed on different machines. I fix... Daniel Crawl

08/17/2012

04:39 PM Bug #5686 (New): datasets produced by archiveDataturbineDataToMetacat workflow show samples 'sliding' in time
Data sample times slowly increase, e.g. second by second, over time, instead of staying on expected markers. This mak... Derik Barseghian
04:29 PM Bug #5685 (New): data isn't always chunked properly
Jing ran the workflow in Windows XP today, and it produced at least one datapackage with data from different sampling... Derik Barseghian
04:23 PM Bug #5684 (Resolved): Add warning to archiving workflow that it must be run on one machine to not produce overlapping datasets
See http://bugzilla.ecoinformatics.org/show_bug.cgi?id=5401 Derik Barseghian
04:03 PM Bug #5683: archiveDataturbineDataToMetacat.kar can fail with an IOException on win7 and XP
The temporary file name contains ":". So windows doesn't like it. I substituted ":" by"_". I tested on both mac and w... Jing Tao
02:11 PM Bug #5683 (Resolved): archiveDataturbineDataToMetacat.kar can fail with an IOException on win7 and XP
When trying to run the archival workflow on win7, I got this error. Jing got it today in XP.
ptolemy.kernel.util.I...
Derik Barseghian
11:35 AM Bug #5682 (New): ontology classes require unique label
The ontology classes have both an ID and label. If the ID is unique, but the label is not, then the class does not ap... Daniel Crawl

08/16/2012

03:10 PM Bug #5674: The patch downloader dialog can fail to automatically restart Kepler
Happened to me in 10.7 too when starting from scratch. Derik Barseghian
01:44 PM Bug #5674: The patch downloader dialog can fail to automatically restart Kepler
I did see this again on 10.8 after starting the test procedure again from scratch. Derik Barseghian
02:40 PM Bug #5681: Tracking bug for sensor-view-0.9.0 release testing
Also need to create a webpage for the Kepler Sensor Platform that the release announcement can refer to, with more in... Derik Barseghian
02:36 PM Bug #5681 (Resolved): Tracking bug for sensor-view-0.9.0 release testing
I've already gone through a few rounds of testing on Mac 10.8 and Win7.
During the last round Jianwu, Dan, and Jing ...
Derik Barseghian
01:21 PM Bug #5679: the workflows in sensor-view should be resaved beneath sensor-view-0.9.0 so users aren't prompted to force open them
I've made various minor workflow improvements, resaved beneath 0.9.0, moved out workflows better located in DT module... Derik Barseghian
06:28 PM Bug #5679 (In Progress): the workflows in sensor-view should be resaved beneath sensor-view-0.9.0 so users aren't prompted to force open them
Now that sensor-view-0.9.0's suite list is finalized, the sensor-view demo workflows should be saved beneath it inste... Derik Barseghian
01:05 PM Bug #5680 (Resolved): after inline save, demo workflow disappears from tree
When I open a demo workflow from the tree, change it and save, it disappears from its location.
If I then close t...
Derik Barseghian
06:03 PM Bug #5637: composite window size & position not always saved
I consulted with Edward and he was fine with fixing this.
Edward wrote:
> If I now open a composite, zoom in, the clo...
Christopher Brooks

08/15/2012

04:27 PM Bug #5678 (New): growingDegreeDays workflow at kepler repository has type resolve error
After talking to Derik, reconfiguring the DT actor to use nibbler.nceas.ucsb.edu works for me. Derik said maybe more ... jianwu jianwu
07:24 AM Bug #5588: Enter and Tab behavior has changed in parameter configuration dialog
Patricia's fixes seem to have solved the problem of enter not closing a dialog.
I'm assigning this to Daniel for rev...
Christopher Brooks
07:17 AM Bug #5188: closing workflow does not save the location change of popup display windows.
I believe this is fixed. I'm reassigning this to Daniel for him to test. Christopher Brooks
06:40 PM Bug #5188: closing workflow does not save the location change of popup display windows.
I checked in a change that may have fixed this, further testing is needed. Christopher Brooks
06:09 PM Bug #5188: closing workflow does not save the location change of popup display windows.
In Ptolemy:
1) Create SDFDirector, Const->Display model
2) Run the model
3) Drag the Display Actor to a new location
...
Christopher Brooks
07:15 AM Bug #5546: SDF director iterations parameter default of 0 is unfriendly
Closing.
There is a separate bug #5677 for documentation changes.
Christopher Brooks
06:33 PM Bug #5602: Timezone confusion using the scheduler
Closing, the workflow runengine and scheduler are working now w/ sensor-view-0.9. There were a few additional problem... Derik Barseghian
05:38 PM Bug #5637: composite window size & position not always saved
To save the location of a subcomposite, do File -> Save in the subcomposite.
The contsructor in ptolemy/actor/gui/Wi...
Christopher Brooks

08/14/2012

11:44 AM Bug #5677 (Resolved): SDF Iterations now defaults to AUTO
The iterations parameter of the SDFDirector defaults to AUTO.
See bug #5546.
To close this bug:
1) Update the K...
Christopher Brooks
11:43 AM Bug #5546: SDF director iterations parameter default of 0 is unfriendly
I'm appending the thread in pt-dev about this.
I made the fix (call isEmbedded()).
Derik asked about creating a fil...
Christopher Brooks

08/13/2012

11:55 AM Bug #5675: new ProgressMeter demo workflows give errors when opening in sensor-view-0.9.0
I've saved the new ProgressMeter moml demos from beneath sensor-view-0.9, to get rid of errors like the above. I also... Derik Barseghian

08/11/2012

07:03 PM Bug #5675 (New): new ProgressMeter demo workflows give errors when opening in sensor-view-0.9.0
There are a few errors when opening these xml workflows beneath sensor-view-0.9.0, despite working in trunk, e.g.:
...
Derik Barseghian

08/10/2012

04:48 PM Bug #5674 (New): The patch downloader dialog can fail to automatically restart Kepler
In pre-release sensor-view-0.9 testing on os X 10.8, I found Kepler-2.3's patch downloader gui can fail to automatica... Derik Barseghian
04:44 PM Bug #5673 (New): if user has newer version of module than exists in repository, old version will be downloaded
Summary: We should probably fix the logic here -- don't download an older version of a module a user already has.
...
Derik Barseghian
03:53 PM Bug #5672 (New): java -jar sensorview-utils-1.0.jar should invoke a simple java app that prints help
It would be nice if the sensorview-utils-1.0.jar had a default main class target that was a simple java app that prin... Derik Barseghian
03:34 PM Bug #5457: Mac OS X: Kepler.app should display module error messages in a window
In 10.8 the Console app is a little different, and I don't see any messages from the Kepler app in it. Hopefully ther... Derik Barseghian
01:18 PM Bug #5671 (New): Workflow Run Manager tries to connect to keplerDevRepository as a database instead of kar store
If you enable kepler dev in your local trunk repository and authentication configuration.xml files, the Workflow Run ... Derik Barseghian
12:01 PM Bug #5670: see if runtimemonitor module can be deleted, contains duplicate code
Hi Bertram, do you know the status of the ProcessCentral and pws module work? Derik Barseghian
06:45 PM Bug #5670 (New): see if runtimemonitor module can be deleted, contains duplicate code
The runtimemonitor module contains these classes:
./runtimemonitor/FigureUpdater.java
./runtimemonitor/MonitorAtt...
Derik Barseghian
07:02 PM Bug #5602: Timezone confusion using the scheduler
Jing and I debugged tonight. The problem was the repository configuration.xml didn't include kepler-dev. It must've b... Derik Barseghian

08/09/2012

04:57 PM Bug #4978: Create additional 'module' property for any menu entries that are inserted by non-core modules
Ok, I *did* just see this when starting sensor-view from cmd line:
[run] *** Attempting to get ResourceBundle ...
Derik Barseghian
12:38 PM Bug #5669 (Resolved): replace ProjectLocator.findKeplerModulesDir() with something more robust.
This method is problematic. Bug#5458 also mentions it.
/**
*
* FIXME replace this with something(...
Derik Barseghian
06:01 PM Bug #5546: SDF director iterations parameter default of 0 is unfriendly
Ok I think I understand, I forgot that it's not always explicitly set to something.
So we could presumably fix all th...
Derik Barseghian
05:48 PM Bug #5546: SDF director iterations parameter default of 0 is unfriendly
If SDFDirector is used inside a non-toplevel composite
(aka an Opaque Composite), then the number of iterations
is ty...
Christopher Brooks
05:15 PM Bug #5546: SDF director iterations parameter default of 0 is unfriendly
Not sure I understand -- which xml files get changed? I wouldn't think we'd want to change existing demo momls, they'... Derik Barseghian
05:08 PM Bug #5546: SDF director iterations parameter default of 0 is unfriendly
On 8/4/12 10:53 AM, Edward A. Lee wrote:
> Jennifer suggests changing the default iterations count of the SDF
> direc...
Christopher Brooks
05:31 PM Bug #5416: downloaded modules by Kepler module manager should know the path of main Kepler installation.
it is fixed based on comment 5 and 6 at version 30378. jianwu jianwu

08/08/2012

04:03 PM Bug #5416: downloaded modules by Kepler module manager should know the path of main Kepler installation.
(In reply to comment #5)
> One problem with your change at r30323 is that it only writes this
> install-path.txt on a...
jianwu jianwu
03:47 PM Bug #5495: released kepler should allow getting patches and changing suites from command line
the problem in comment 4 is fixed in version 30376. close this bug. jianwu jianwu
07:13 AM Bug #5266: Two empty boxes inside Sinewave actor and other icon problems for attributes
Edward writes:
> This sort of bug usually arises from something being
> done outside the Swing event thread that sho...
Christopher Brooks
05:23 PM Bug #5663: KeplerGraphFrame has much duplicated code
r30371:
Moved org.kepler.gui.KeplerGraphFrameExtension to ptolemy.vergil.basic.BasicGraphFrameExtension.
Removed du...
Christopher Brooks

08/07/2012

04:19 PM Bug #5668 (Resolved): module manager should support batch mode execution.
a blocker for batch execution support for Kepler module manager. Users should be able to use command line to check wo... jianwu jianwu
04:17 PM Bug #5266: Two empty boxes inside Sinewave actor and other icon problems for attributes
Hi Sean,
If I were you, I'd focus on the other bug because the Sinewave icon bug may be tricky because Sinewave is an...
Christopher Brooks
02:48 PM Bug #5266: Two empty boxes inside Sinewave actor and other icon problems for attributes
I get this behavior under kepler trunk, reporting suite is not needed. Sean Riddle
04:05 PM Bug #5348: Opening KAR or opening workflow under KAR behaves differently.
correct new bug id: A further reevaluation bug is created at bug 5667. jianwu jianwu
04:04 PM Bug #5348: Opening KAR or opening workflow under KAR behaves differently.
close this bug. A further reevaluation bug is created at bug 5348. jianwu jianwu
04:03 PM Bug #5667 (New): reevaluate how opening kars vs. XML should work from actor library.
currently, opening kar is different from opening xml from actor library (see bug 5348). One more difference is that o... jianwu jianwu
03:55 PM Bug #5489: Module Manager GUI should fail gracefully if a remote module cannot be downloaded
two ways to reproduce the bug: 1) close internet connection just before downloading start; 2) have a unpublished modu... jianwu jianwu
02:12 PM Bug #5655: sdm spa Repeat is a duplicate of a Ptolemy actor
Kepler actors/src/org/sdm/spa/Repeat.java has:
public TypedIOPort portOutput;
public TypedIOPort portInput;
...
Christopher Brooks
01:56 PM Bug #5655: sdm spa Repeat is a duplicate of a Ptolemy actor
These two actors have different ports and parameters. Ptolemy one has one input port and two parameters; Sdm one has ... jianwu jianwu
11:07 AM Feature #5666 (New): Build system needs a target to build all common or blessed non-core modules
There should be a way to easily build all the common or "blessed"
non-core modules.
For example, "ant change-to -Ds...
Christopher Brooks
10:14 PM Bug #5660: ExtensionFileFilter is a duplicate of a Ptolemy class
Dan did most of the work, all I had to do was remove ExtensionFileFilter.java
and update the imports in two locations...
Christopher Brooks
09:55 PM Bug #5661: Remove SwingWorker and use javax.swing.SwingWorker
I removed util.SwingWorker and updated
authentication-gui/src/org/kepler/authentication/GAMAAuthenticationService.jav...
Christopher Brooks
08:17 PM Bug #5661: Remove SwingWorker and use javax.swing.SwingWorker
I've removed ptolemy/src/ptolemy/gui/SwingWorker.java
Unfortunately, org.kepler.gui.ProgressMonitorSwingWorker uses ...
Christopher Brooks
08:19 PM Bug #5665 (Resolved): modulemanager et al.: swing-worker-1.2.jar should be removed
bug #5661 is about removing util.SwingWorker.
Unfortunately, there is code that uses a different SwingWorker from ...
Christopher Brooks
07:44 PM Bug #5648: FileCopier code duplication
./core/src/org/kepler/util/FileCopier.java was used by tagging. I've temporarily resurrected it, but into the tagging... Derik Barseghian
05:01 PM Bug #5664 (New): Check for duplicate code
See bug #4926 for how to check for duplicate code.
This bug is targeted to 2.5.0 so that we don't forget to do it.
Christopher Brooks
05:00 PM Bug #4926: Examine Kepler for duplicated Ptolemy code
To find files that have the same name in both Ptolemy II and Kepler:
Look for duplicate file names:
# Get all the .ja...
Christopher Brooks

08/06/2012

04:55 PM Bug #5663 (Resolved): KeplerGraphFrame has much duplicated code
I looked in to why KeplerGraphFrame has so much duplicated code
and it looks like Comad uses KeplerGraphFrameExtensi...
Christopher Brooks
04:52 PM Bug #5662 (Resolved): resurgence ArrayAccumulator is a duplicate of Ptolemy ArrayAccumulate
./actors/src/org/resurgence/actor/ArrayAccumulator.java
Duplicate of ptolemy/src/ptolemy/actor/lib/ArrayAccumulate.j...
Christopher Brooks
04:51 PM Bug #5661 (Resolved): Remove SwingWorker and use javax.swing.SwingWorker
./util/src/util/SwingWorker.java
FIXME: Remove and use javax.swing.SwingWorker.
See http://docs.oracle.com/javas...
Christopher Brooks
04:49 PM Bug #5660 (Resolved): ExtensionFileFilter is a duplicate of a Ptolemy class
./gui/src/org/kepler/gui/util/ExtensionFileFilter.java
FIXME: This matched ptolemy/src/diva/gui/ExtensionFileFilter....
Christopher Brooks
04:45 PM Bug #5659 (Closed): Kepler CaseGraphFrame and CaseGraphTableau have duplicated Ptolemy code.
./gui/src/org/kepler/gui/frame/CaseGraphFrame.java
FIXME: Refactor!
Duplicate of ptolemy/src/ptolemy/vergil/...
Christopher Brooks
04:43 PM Bug #5658 (Resolved): Rename kepler/moml/filter classes so that they don't have the same name as the Ptolemy filter classes
./core/src/org/kepler/moml/filter/BackwardCompatibility.java
./core/src/org/kepler/moml/filter/ClassChanges.java
./...
Christopher Brooks
04:42 PM Bug #5657 (Resolved): kepler moml FileAttribute should probably be a FileParameter
./core/src/org/kepler/moml/FileAttribute.java
The Kepler version extends StringAttribute
This matches ptolemy/src...
Christopher Brooks
04:40 PM Bug #5656 (Resolved): sdm spa StringConst is a duplicate of a Ptolemy actor
./actors/src/org/sdm/spa/StringConst.java
FIXME: Deprecate and extend ptolemy/src/ptolemy/actor/lib/StringConst.java
Christopher Brooks
04:39 PM Bug #5655 (Resolved): sdm spa Repeat is a duplicate of a Ptolemy actor
./actors/src/org/sdm/spa/Repeat.java
FIXME: No documentation? If possible, Deprecate and extend
ptolemy/src/ptolem...
Christopher Brooks
04:38 PM Bug #5654 (Resolved): Geon ArrayRemoveElement is a duplicate of a Ptolemy actor
./actors/src/org/geon/ArrayRemoveElement.java
FIXME: Duplicate of ptolemy/src/ptolemy/actor/lib/ArrayRemoveElemen...
Christopher Brooks
04:36 PM Bug #5653 (Resolved): Geon ArrayContains is a duplicate of a Ptolemy actor
./actors/src/org/geon/ArrayContains.java
FIXME: Duplicate of ptolemy/src/ptolemy/actor/lib/ArrayContains.java
...
Christopher Brooks
04:35 PM Bug #5652 (New): Geon Scp and spa Ssh2Exec have duplicate code.
Duplicate code detected with CPD. See
actors/src/org/geon/Scp.java line 295
actors/src/org/sdm/spa/Ssh2Exec.j...
Christopher Brooks
04:33 PM Bug #5651 (Resolved): WebService, WebServiceStub and MessageBasedWebService have duplicate code
##########
actors/src/org/sdm/spa/WebService.java line 1094
actors/src/org/sdm/spa/WebServiceStub.java line 52...
Christopher Brooks
04:31 PM Bug #5650: actors LidarWorkflowExecute and load WorkflowExecute have duplicated code
Also:
actors/src/org/geon/LidarWorkflowExecute.java line 373
actors/src/org/geon/ModelService.java line 2...
Christopher Brooks
04:27 PM Bug #5650 (Resolved): actors LidarWorkflowExecute and load WorkflowExecute have duplicated code
Duplicates detected with CPD. See
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4926#c1
actors/src/org/ge...
Christopher Brooks
04:30 PM Bug #5649: opendap/{DapObjectsToToken,TokenManager,TypeManager} are almost identical
Also:
pendap/src/org/kepler/dataproxy/datasource/opendap/DapObjectsToType.java line 73
o
pendap/src/org/keple...
Christopher Brooks
04:24 PM Bug #5649 (Resolved): opendap/{DapObjectsToToken,TokenManager,TypeManager} are almost identical
opendap/src/org/kepler/dataproxy/datasource/opendap/DapObjectsToToken.java line 65
opendap/src/org/kepler/datap...
Christopher Brooks
04:23 PM Bug #5648 (Resolved): FileCopier code duplication
FileCopier:
./core/src/org/kepler/util/FileCopier.java - Fixed. Unused code which was removed.
./actors/src/...
Christopher Brooks
03:29 PM Bug #5247: Allow user to set memory allocated to Kepler from within Kepler
I increased max memory to 1gb at r30353. You will have to delete your existing build-area/settings/memory.xml Derik Barseghian
12:59 PM Bug #5247: Allow user to set memory allocated to Kepler from within Kepler
Derik will increase the default memory heap size to 1 Gig. Ilkay Altintas
01:33 PM Bug #5646 (New): Switching some of the add-on modules to core
Before 2.5, we need a discussion on switching some of the key modules, e.g., modules in the reporting suite, to the c... Ilkay Altintas
01:15 PM Bug #5645 (New): kar uploading should need user account.
Currently, anonymous users can upload their kars to Kepler kar repository. They could bring malicious actors and be h... jianwu jianwu
12:54 PM Bug #5633: Actor/Attribute Search/Find Facility needs menu choices
Decided that a search bar will be added to the outline. Ilkay Altintas
12:46 PM Bug #5458: Moving between 2.2 and 2.3 and back requires deleting ~/KeplerData
It is fixed as of 2.3 and this will not happen between 2.3 & 2.4. What could still happen is if you start 2.3 and re... Ilkay Altintas
12:37 PM Bug #4281: ant update produces message about running svn cleanup
This is a bug for developers. A potential fix is a two stage update that copies the file and writes on the copy. Late... Ilkay Altintas
12:30 PM Bug #5348: Opening KAR or opening workflow under KAR behaves differently.
Add a new bug to reevaluate how opening kars vs. XML should work. Ilkay Altintas
12:26 PM Bug #5495: released kepler should allow getting patches and changing suites from command line
Report the small fix and add/link to the 2.5 bug. Ilkay Altintas
12:24 PM Bug #5398: Re-install of Kepler-x.y doesn't overwrite modules.txt
This was a 2.2 bug. It has been solved for 2.3. The behavior right now seems to be ok for 2.4, but the user needs to ... Ilkay Altintas
12:15 PM Bug #5487: blank modules.txt files created for non-suite modules
Needs to be tested and evaluated at the end of release cycle. Ilkay Altintas
12:07 PM Bug #5440: special checkout behavior for hardcoded ptolemy module names
We agree that we will have a special Ptolemy II branch for each Kepler release. The branch should stay in the ptII re... Ilkay Altintas
12:02 PM Bug #4926: Examine Kepler for duplicated Ptolemy code
This should be done for each release in the end. It shouldn't be released if it doesn't meet some metrics or criteria... Ilkay Altintas
11:40 AM Bug #4068: File Menu should display 5 most recently used workflows
Decided to change it to be 10 instead of 5. Ilkay Altintas
11:38 AM Bug #4908: actor/director/attribute .xml file documentation needs to be updated
PN needs to be updated for 2.4. Ilkay Altintas
11:36 AM Bug #4908: actor/director/attribute .xml file documentation needs to be updated
A future RFE needs to be issued for a future release to combine the forked pieces. Dan investigated the technical par... Ilkay Altintas
11:26 AM Bug #5485: standalone Module Manager can break Kepler app ability to startup
Not able to reproduce this. Will try more and close it if not reproducible. Ilkay Altintas
11:22 AM Bug #5426: workflow lsid changes when running from command line
Added a command line option to stop it. Closed for 2.4 release. For 2.5, add a new bug with investigation of alternat... Ilkay Altintas
11:18 AM Bug #5280: missing command line execution for KAR files
See http://stackoverflow.com/questions/620993/determining-binary-text-file-type
for ideas about how to detect binary ...
Christopher Brooks
11:16 AM Bug #5280: missing command line execution for KAR files
Still need to update the docs and the user manual. Also the text effigy will be updated to not open binaries. Ilkay Altintas
11:00 AM Bug #4978: Create additional 'module' property for any menu entries that are inserted by non-core modules
I briefly tried to reproduce this and was unable (changing to sensor-view suite, changing various add-on module setti... Derik Barseghian
10:56 AM Bug #5416: downloaded modules by Kepler module manager should know the path of main Kepler installation.
One problem with your change at r30323 is that it only writes this install-path.txt on a new install. A user could su... Derik Barseghian

08/03/2012

02:15 PM Bug #5602: Timezone confusion using the scheduler
Hey Jing, let's discuss this bug when you get back. Derik Barseghian
02:05 PM Bug #5580: create sensor-view module documentation
Closing. Derik Barseghian

07/31/2012

03:14 PM Bug #4068: File Menu should display 5 most recently used workflows
The history menu uses Configuration.openModel() to open files. If the file is a KAR, but cannot be opened, then the K... Daniel Crawl
01:44 PM Bug #5416: downloaded modules by Kepler module manager should know the path of main Kepler installation.
I updated class in build-area to write install-path.txt to ~/KeplerDatat/kepler.modules/build-area dir at version 303... jianwu jianwu
12:57 PM Bug #5495: released kepler should allow getting patches and changing suites from command line
It seems like a bug to display a window when running -nogui. If patches are available, kepler.sh could print a messag... Daniel Crawl
10:57 AM Bug #5495: released kepler should allow getting patches and changing suites from command line
We needs a full command line support for Module Manager to support workflow module dependency checking and Kepler upd... jianwu jianwu
10:45 AM Bug #5495: released kepler should allow getting patches and changing suites from command line
It is related to bug 4516 since both need module manager interaction through command line. jianwu jianwu
12:48 PM Bug #5625: create kepler documentation for 2.4
We should verify all the exercises in the getting started guide. While updating it for 5452, I noticed that the Run W... Daniel Crawl
12:45 PM Bug #5509: How do I run the demos
The Help -> Kepler Documentation links to the demos are working again.
The demos are now accessible in the actor tre...
Daniel Crawl
12:43 PM Bug #5452: uneasy access to the demo workflows
The demos are now accessible in the actor tree. I've updated the getting started guide to describe opening them from ... Daniel Crawl
10:55 AM Bug #3997: Supporting display actor conversion for command line execution.
I updated ptolemy version 64086 and kepler version 30298 to support redisplay for MonitorValue and ImageDisplay actor... jianwu jianwu
10:46 AM Bug #4516: Module Manager needs ability to install modules needed by KARs
It is related to bug 5495 since both need module manager interaction through command line. jianwu jianwu

07/30/2012

02:17 PM Bug #5398: Re-install of Kepler-x.y doesn't overwrite modules.txt
After discussion with Dan, we think it is correct to keep its suite configuration even a Kepler version is uninstalle... jianwu jianwu
 

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