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From 10/20/2006 to 11/18/2006

11/18/2006

11:00 AM Bug #2617: 36. The Data Source tab
fixed Xianhua Liu
10:16 AM Bug #2633: Remove search button from search page
1. removed the left side menu bar to make more room for contents
2. added menus (about and Search) at the top frame
Xianhua Liu
10:13 AM Bug #2600: ID number on the specimen & images pages needs revision
fixed. see bug #2615 Xianhua Liu
09:22 AM Bug #2615: Failure to map WEWO and other non-NCU series in Specify
1. changed the querying class at the server side
2. Changed the html pages (both colletions and images) to show serie...
Xianhua Liu

11/16/2006

02:40 PM Bug #2671: Finish Import DB: what to do with Main Menu visible tabs field?
and check for new fields that aren't on the table. If not there, it gets tricky, supply default value and write it a... Michael Lee
02:38 PM Bug #2671 (Resolved): Finish Import DB: what to do with Main Menu visible tabs field?
Allow CVS Entry database to link to another CVS Entry database and run through the data processing steps from inside ... Michael Lee

11/13/2006

01:19 PM Bug #2668 (New): Geocoordinates
We might have a student in the GIS certificate program take on a pilot project of georeferencing herbarium specimens ... Lisa Giencke
01:15 PM Bug #2615: Failure to map WEWO and other non-NCU series in Specify
The Series field tells us which herbarium is in possession of a certain specimen. The table CatalogSeries shows what ... Lisa Giencke
01:08 PM Bug #2653: Removal of Databased Publications
This has been taken care of on our end. We have two pick lists now, Format (better name for it?) for Documents/Photog... Lisa Giencke
09:51 AM Bug #2667 (Resolved): Test Entry Tool processing of data vs. SAS
SAS can process data (the old way) and we should take some new data, export it to old style CVS text files, run them ... Michael Lee
09:48 AM Bug #2666 (New): ready for DBA: Project 76 (Elizabeth City, NC): 52 plots
this data needs to be processed and added to the (v2006) central archive
(Forbes writing:)
> For now, I would sugge...
Michael Lee
09:47 AM Bug #2665 (New): Ready for DBA process: Project 75 (Singletary Lake, NC): 52 plots
this data needs to be processed and added to the (v2006) central archive
(Forbes writing:)
> For now, I would sugge...
Michael Lee
09:46 AM Bug #2664 (Resolved): 5 errs remain: Project 74 (Cape Fear Riparian): 62 plots
this data needs to be processed and added to the (v2006) central archive Michael Lee
09:46 AM Bug #2663 (New): 2 errs left: + duplicates flagged: Project 73 (Mountain Bogs): 64 plots
this data needs to be processed and added to the (v2006) central archive Michael Lee
09:46 AM Bug #2662 (New): Unfolding: Project 64 (Brunswick Co. NC): 88 plots
this data needs to be processed and added to the (v2006) central archive Michael Lee
09:45 AM Bug #2661 (New): comments in XLS resolve: Project 63 (Francis Marion NF): 54 plots
this data needs to be processed and added to the (v2006) central archive Michael Lee
09:45 AM Bug #2660 (New): toArchiveDB: Project 62 (Windsor): 7 plots
this data needs to be processed and added to the (v2006) central archive Michael Lee

11/12/2006

01:30 PM Bug #2600: ID number on the specimen & images pages needs revision
changed id of images to the accession number. Need more information from Lisa about which field contains herbarium n... Xianhua Liu
01:11 PM Bug #2639: Inferred relationships too broad
Rule used here is (rule 24 in the rule document):
IF all children of A < B THEN A<=B
Original relationships:
Cary...
Xianhua Liu
12:48 PM Bug #2637: RAB records of nominal variety occurrences have incomplete name
I need to discuss with Bob and Alan Weakley about this one. Xianhua Liu
12:42 PM Bug #2615: Failure to map WEWO and other non-NCU series in Specify
changed in "http://152.2.14.231/website/NCFloraTest/". Now collections show up for any herbarium collections. We need... Xianhua Liu
10:41 AM Bug #2574: update species in old archive database from Forbes
Joel has gotten back to us on Xyris and they are just an unknown sp in Xyris, not Floridian Bay. This bug is now squ... Michael Lee

11/10/2006

05:24 PM Bug #2574: update species in old archive database from Forbes
Fixed, except for getting back info from Joel as to which Xyris we should use. Michael Lee
04:15 PM Bug #2574: update species in old archive database from Forbes
Xyris on these plots has NOT been resolved, we are checking with Joel:
plotID
051-08-0244
051-08-0245
051-08-0250
f...
Michael Lee
03:16 PM Bug #2574: update species in old archive database from Forbes
Dicranella has been resolved. Michael Lee
04:29 PM Bug #2659 (Resolved): StratumPlot not linked to HerbData
The stratum plot records are not properly linked in from the data sources for recent projects. StratumPlot.StratumPl... Michael Lee
02:42 PM Bug #2640: Identify USDA species without county distribution where other spp in genus have distribution
This PART of the bug is done, but there are still other related bugs that need addressing.
http://www.unc.edu/~mikele...
Michael Lee
02:31 PM Bug #2640: Identify USDA species without county distribution where other spp in genus have distribution
Note that the other bugs related to this one can be nicely viewed here:
http://bugzilla.ecoinformatics.org/showdepend...
Michael Lee
02:27 PM Bug #2658 (Closed): Split USDA records into concept-based and nominal sets
+++ This bug was initially created as a clone of Bug #2640 +++
Look at PERSBOR s.s. with all those records for NC,...
Michael Lee
02:26 PM Bug #2657 (Closed): Highlight species with too few counties and those with too many
+++ This bug was initially created as a clone of Bug #2640 +++
Look at PERSBOR s.s. with all those records for NC,...
Michael Lee

11/09/2006

09:18 AM Bug #2652: Netscape & Firefox do not generate maps properly
Firefox 1.5 has the same issues as Netscape Robert Peet
07:14 AM Bug #2652 (Closed): Netscape & Firefox do not generate maps properly
If you generate a map with Netscape 8.1, the map never quite finishes. You do get a map, but you also get an hourgla... Robert Peet
07:38 AM Bug #2590: "get missing taxa" search
resolved Robert Peet
07:00 AM Bug #2590: "get missing taxa" search
Bug resolved Robert Peet
07:36 AM Bug #2656 (New): County lists should include ambiguous records
Currently ambiguous occurrences are not so annotated in the county lists. Also, ambiguous taxa are not handled proper... Robert Peet
07:29 AM Bug #2655 (Closed): Download county list
You can search by county to get a list of county records, or records missing in a county, but we have no way to downl... Robert Peet
07:28 AM Bug #2654 (Closed): Selection box for sources for county records
When you search by county, it is not clear which sources of county records are being used to generate the list. We sh... Robert Peet
07:26 AM Bug #2653 (Closed): Removal of Databased Publications
There are two entries in our typology list in Specify that I think would be best to avoid in the atlas. These are Doc... Lisa Giencke
07:10 AM Bug #2651 (Closed): font issues with various browsers
If you create a map of a taxon with IE 6.0 or 7.0, everything looks fine. However, if you create a map with either N... Robert Peet

11/08/2006

11:29 PM Bug #2624: 43. Paging through large families.
bug resolved Robert Peet
07:56 PM Bug #2624: 43. Paging through large families.
fixed Xianhua Liu
11:27 PM Bug #2605: 24. Search all counties in a state
bug resolved Robert Peet
07:25 PM Bug #2605: 24. Search all counties in a state
fixed
Xianhua Liu
07:10 PM Bug #2590: "get missing taxa" search
(N1-C1): w,y
(N2-C2): y,z
(N1-C1)+(N2-C2): w,y,z
N4-C4: w,y
(N1-C1)+(N2-C2)!=N4-C4
Xianhua Liu

11/06/2006

11:00 AM Bug #2645 (Closed): split USDA in the legend into into two labels
As a separate and contingent bug, Xianhua should split USDA in the legend
into into two labels and make any code cha...
Michael Lee

11/05/2006

11:38 PM Bug #2643 (Closed): Search for name synonymized by Weakley
There is some unexplained inconsistency here, but in the end I see two types of errors resultsing from one situation.... Robert Peet
11:17 PM Bug #2637: RAB records of nominal variety occurrences have incomplete name
If you look at the RAB book you find a map for Ilex decidua and a map for Ilex decidua var. longipes. What RAB mean ... Robert Peet
01:22 PM Bug #2637: RAB records of nominal variety occurrences have incomplete name
I do not understand about this one. For me there is nothing wrong about the map of Ilex longipes. We have Ilex longip... Xianhua Liu
11:06 PM Bug #2615: Failure to map WEWO and other non-NCU series in Specify
Example = Brassica nigra, which is an NCSC specimen in the NCU SPecify database. The colelctiosn show up as specimen... Robert Peet
07:14 PM Bug #2615: Failure to map WEWO and other non-NCU series in Specify
This bug refers to those NCSU specimens stored in the Specify database (a small number) and not to the larger number ... Robert Peet
01:11 PM Bug #2615: Failure to map WEWO and other non-NCU series in Specify
The reason NCSU collections do not show up in "Collections" is that they are not stored in Specify database as NCU sp... Xianhua Liu
11:01 PM Bug #2590: "get missing taxa" search
(N1-C1)+(N2-C2) = N4-C4 Robert Peet
12:15 PM Bug #2590: "get missing taxa" search
Let's put an example here to make it clearer. Given one target county: C and 2 data sources: A and B.
For C's neigh...
Xianhua Liu
10:56 PM Bug #2624: 43. Paging through large families.
that would solve the problem
Robert Peet
11:16 AM Bug #2624: 43. Paging through large families.
I am not quite sure about this requirement. My understanding is that when you click the "next" link, you wnat the nex... Xianhua Liu
10:53 PM Bug #2619: Systematic error in determination of nominals
verified fixed Robert Peet
02:47 PM Bug #2619: Systematic error in determination of nominals
fixed. same as 2627. Xianhua Liu
10:50 PM Bug #2627: Nominal concepts should not overlap Weakley concepts
verified fixed Robert Peet
02:17 PM Bug #2627: Nominal concepts should not overlap Weakley concepts
fixed Xianhua Liu
10:42 PM Bug #2598: 17. Apostrophes
I assume this to be fixed - not sure where to check Robert Peet
01:36 PM Bug #2598: 17. Apostrophes
fxied Xianhua Liu
10:41 PM Bug #2588: Specimen & Image lists should include infraspecific taxa
Verified fixed Robert Peet
02:54 PM Bug #2588: Specimen & Image lists should include infraspecific taxa
fixed. sent email to hinar asking update the server side classes. Xianhua Liu
11:47 AM Bug #2588: Specimen & Image lists should include infraspecific taxa
fixed in http://152.2.14.231/website/NCFloraTest. Now it can query by concept. Xianhua Liu
10:38 PM Bug #2596: 15. Alphabetize synonyms
verified fixed Robert Peet
12:54 PM Bug #2596: 15. Alphabetize synonyms
fixed Xianhua Liu
10:37 PM Bug #2634: Data source description errors
verified fixed Robert Peet
11:21 AM Bug #2634: Data source description errors
fixed Xianhua Liu
10:36 PM Bug #2616: 35. Click on county
verified fixed Robert Peet
11:03 AM Bug #2616: 35. Click on county
dixed Xianhua Liu
10:34 PM Bug #2614: 33. Map source issues
verified fixed Robert Peet
10:33 PM Bug #2612: 31. Specimen data (fix typo)
verified fixed Robert Peet
10:32 PM Bug #2609: Erroneous assignment of ambiguous status
Note that Acer negundo Weakley < Acer negundo nominal.
1. Given this relationship, the NCSU specimens should not be ...
Robert Peet
06:10 PM Bug #2609: Erroneous assignment of ambiguous status
Rule: IF all children of A < or = some children of B THEN A<B
RKP: why not =OR<
Original Relationships:
1. Acer n...
Robert Peet
10:00 AM Bug #2609: Erroneous assignment of ambiguous status

Rule: IF all children of A < or = some children of B THEN A<B
Original Relationships:
1. Acer negundo var. negu...
Xianhua Liu
10:15 PM Bug #2607: 26. Misfunction on back-to-query button
verified fixed Robert Peet
10:11 PM Bug #2605: 24. Search all counties in a state
--all-- needs to move from the bottom of the list to the top Robert Peet
09:45 AM Bug #2605: 24. Search all counties in a state
Fixed in the testing site: 152.2.14.231/website/NCFloraTest
This fix involves changes in the java servlet classes, wh...
Xianhua Liu
10:10 PM Bug #2601: Explanation of relationship symbols “>” and “<” reversed
ok, i think Robert Peet
10:06 PM Bug #2581: Children should occur in map of parent
Not yet fixed.
A search on Hymenocallis occidentalis has far fewer counties shaded than a seach on Hymenocallis occc...
Robert Peet
03:04 PM Bug #2581: Children should occur in map of parent
Whether or not children taxa are included depends on whether or not relationships are made between the parent and its... Xianhua Liu
09:57 PM Bug #2613: 32. Trilliaceae (Missing)
verified fixed Robert Peet
10:10 AM Bug #2613: 32. Trilliaceae (Missing)
fixed Xianhua Liu
09:55 PM Bug #2625: 44. Bug resolved
never a real bug here Robert Peet
09:55 PM Bug #2620: 39. Bug resolved
never a bug here Robert Peet
09:41 PM Bug #2600: ID number on the specimen & images pages needs revision
The problems seem to remain, particular with respect to images.
I will use examples based on Carya myristiciformis
...
Robert Peet
09:04 PM Bug #2639: Inferred relationships too broad
In the case of a species with varieties in Weakley, we must deduce the relationship of the Weakley species-level taxo... Robert Peet
08:54 PM Bug #2595: 14. The search box pick list seems to work inconsistently for species with infraspecific taxa.
bug verified fixed Robert Peet
08:39 PM Bug #2593: 12. On the Home page, the green color for "Other data sources" is not the same green
Verified fixed Robert Peet
08:38 PM Bug #2592: 11. The "Home" button should probably be changed to something like “About” ...
verified fixed Robert Peet
08:36 PM Bug #2591: 10. Image thumbnails use large files
verified fixed Robert Peet
08:33 PM Bug #2580: 1. Incorrect links to specimen images
Verified resolved Robert Peet
02:45 PM Bug #2580: 1. Incorrect links to specimen images
changed javascript codes to herbarium site. sent email to hinar asking him to update java classes. Before hinar updat... Xianhua Liu
07:28 PM Bug #2597: Display of cultivated records should be optional
Xianhua reports this as fixed, but I cannot see anything changed (I checked on 152.2.14.231). I checked Carya illino... Robert Peet
01:04 PM Bug #2597: Display of cultivated records should be optional
fixed Xianhua Liu
01:13 PM Bug #2623: 42. TaxonProgress updates
I will work out this later with Lisa Xianhua Liu
11:11 AM Bug #2618: Server errors; incompatability with Windows 2000 OS
I will go back to this multi-platforms and multi-browsers soppurt issue later. It works fine on my Windows XP IMB des... Xianhua Liu

11/03/2006

11:22 PM Bug #2640: Identify USDA species without county distribution where other spp in genus have distribution
(In reply to comment #1)
> Plants-NC matches the Plants-Search list (where in NC) exactly, except it
> contains the ...
Michael Lee
11:18 PM Bug #2640: Identify USDA species without county distribution where other spp in genus have distribution
(In reply to comment #1)
> > Plants-NC.txt = Results of request for a list of NC plants from PLANTS, done
> > today....
Michael Lee
11:16 PM Bug #2640: Identify USDA species without county distribution where other spp in genus have distribution
On Fri, 3 Nov 2006, Robert K. Peet wrote:
> Hi,
>
> The attached zip file contains 4 files.
>
> Plants-NC.txt = Resu...
Michael Lee
04:35 PM Bug #2642: QA: Keystroking efficiency additions
backspace on the cover data form should go back to the previous entry in the current entry is not filled in. Michael Lee
04:25 PM Bug #2642: QA: Keystroking efficiency additions
strata could also use some help in adding values when you press - in the base field, it shuold skip you to height so ... Michael Lee
03:53 PM Bug #2642 (Resolved): QA: Keystroking efficiency additions
The Cover Data form is a bit tedious if you want to skip the module that you are in and get to the next. Perhaps Ctl... Michael Lee

11/02/2006

11:14 AM Bug #2641 (Closed): Split USDA into concept-based and nominal parts
This bug supports the efforts devoted to bug #2640, where the county record data will be split into two sets reflecti... Robert Peet
11:09 AM Bug #2640 (New): Identify USDA species without county distribution where other spp in genus have distribution
Look at PERSBOR s.s. with all those records for NC, SC, GA, AL that are
actually P. palustris. We need a solution.
...
Robert Peet

11/01/2006

07:36 AM Bug #2639 (Closed): Inferred relationships too broad
The Carya glabra example reveals a new bug. All of USDA and RAB map
as ambiguous. This should not be the case beca...
Robert Peet
07:35 AM Bug #2638 (New): Ambiguous records should have details of ambiguity clickable
Discussion from Peter White with RKP responses:
> Makes we wonder if we need to parse the kinds of ambiguity. Is th...
Robert Peet
07:09 AM Bug #2637 (New): RAB records of nominal variety occurrences have incomplete name
Weakley writes:
Note all the yellow RAB dots for Ilex longipes, when longipes is unambiguously mapped by RAB as deci...
Robert Peet
06:48 AM Bug #2636: Better labels for ambiguous occurrences
Peter White writes:
I wonder if it should be Carya glabra AND/OR Carya ovalis. If the
record is based on lumping, b...
Robert Peet
01:35 AM Bug #2636 (Closed): Better labels for ambiguous occurrences
This is an upgrade; not an error.
Ambiguous identifications have a legend entry that states the name that was foun...
Robert Peet
05:08 AM Bug #2610: 29. Sources of ambiguous records.
I think this is a good idea. How difficult is Steve's proposed fix? I am a little concerned about the busy-ness iss... Alan Weakley
02:17 AM Bug #2619: Systematic error in determination of nominals
This is closely related to bug 2627. In both cases the key issue is that nominal concepts must be either > or = all ... Robert Peet
02:09 AM Bug #2627: Nominal concepts should not overlap Weakley concepts
I reiterate that I think the definition of the nominal concept should be that concept that includes all the other con... Robert Peet
01:53 AM Bug #2617: 36. The Data Source tab

Seems like the programming would not be that hard if the current source page were maintained as a not visible page, ...
Robert Peet

10/31/2006

09:51 PM Bug #2627: Nominal concepts should not overlap Weakley concepts
The relationship of Weakley's concept to a nominal concept is inferred based on all possible relationships to the con... Xianhua Liu
09:37 PM Bug #2619: Systematic error in determination of nominals
Not really. The reason is that there is relationship:
Carya ovata (Alan Weakley) < Carya ovata (FNA)
XIanhua
Xianhua Liu
09:25 PM Bug #2617: 36. The Data Source tab
The legend is dynamically created by the server to reflect changes in data source selection. It is hard, if not possi... Xianhua Liu
09:17 PM Bug #2614: 33. Map source issues
fixed Xianhua Liu
09:00 PM Bug #2612: 31. Specimen data (fix typo)
Fixed Xianhua Liu
08:57 PM Bug #2607: 26. Misfunction on back-to-query button
fixed Xianhua Liu
08:19 PM Bug #2601: Explanation of relationship symbols “>” and “<” reversed
Fixed Xianhua Liu

10/30/2006

03:26 PM Bug #2634 (Closed): Data source description errors
Two text errors on the data source description page.
1. The NCU description should be changed to read:
"Those sp...
Robert Peet
03:20 PM Bug #2633 (Closed): Remove search button from search page
Including the “Search” button on the search page itself seems unnecessary and potentially confusing to users. Robert Peet
03:18 PM Bug #2618: Server errors; incompatability with Windows 2000 OS
Seiberling reported "When using the Firefox browser, the map page gives an error message, “Unable to display MapSer... Robert Peet
03:11 PM Bug #2608: 27. Browser compatibility testing
The specific part of this bug related to crashes has been incorporated in bug 2618 (= but 37).
However, this does no...
Robert Peet
03:03 PM Bug #2604: 23. County and state pulldowns
Steve Seiberling reports:
The search page sometimes continues to be displayed for several moments after entering a ge...
Robert Peet
03:00 PM Bug #2581: Children should occur in map of parent
There remains a pervasive and important problem that a map of a taxon does not necessarily include its children. Thi... Robert Peet
01:41 PM Bug #2632: How to store one module plots - no subplots?
I vote to have only S for one module plots Robert Peet
11:48 AM Bug #2632 (Resolved): How to store one module plots - no subplots?
We currently use subplots with our multiple module plots. This seems unnecessary for one module plots (such as level... Michael Lee
01:27 PM Bug #2617: 36. The Data Source tab
27 Oct 06 Peter White sent RKP an email as follows: " One question on the atlas, that probably has come up and will b... Robert Peet

10/29/2006

12:30 PM Bug #2600: ID number on the specimen & images pages needs revision
Fixed Xianhua Liu
12:09 PM Bug #2595: 14. The search box pick list seems to work inconsistently for species with infraspecific taxa.
Updated the weakley's concepts list Xianhua Liu
11:54 AM Bug #2593: 12. On the Home page, the green color for "Other data sources" is not the same green
Fixed Xianhua Liu
11:48 AM Bug #2592: 11. The "Home" button should probably be changed to something like “About” ...
Fixed. Xianhua Liu
11:34 AM Bug #2591: 10. Image thumbnails use large files
FIxed Xianhua Liu
11:12 AM Bug #2580: 1. Incorrect links to specimen images
Fixed in testing site: http://152.2.14.231/website/NCFloraTest Xianhua Liu
11:09 AM Bug #2584: 3. "Ambiguous" CVS and NCNHP records mapped differently from other ambiguous records

In NCU flora (the website), different data sources (e.g. CVS, NCU) follow different concept standands (e.g. Weakley,...
Xianhua Liu
11:07 AM Bug #2581: Children should occur in map of parent
In NCU flora (the website), different data sources (e.g. CVS, NCU) follow different concept standands (e.g. Weakley, ... Xianhua Liu

10/27/2006

04:12 PM Bug #2631: Annotate demonstration set of databased speciemens to concept
This bug is originally from "other ideas and observations from Peet and Weakley" Michael Lee
04:06 PM Bug #2631 (New): Annotate demonstration set of databased speciemens to concept
In our dreams Michael Lee
04:12 PM Bug #2630: Verification that CVS records map correctly to Weakley
This bug is originally from "other ideas and observations from Peet and Weakley" Michael Lee
04:05 PM Bug #2630 (New): Verification that CVS records map correctly to Weakley
Bug assigned to Bob to scope for Alan Michael Lee
04:12 PM Bug #2629: Relationships between Weakley to USDA v 4.0 concepts
This bug is originally from "other ideas and observations from Peet and Weakley" Michael Lee
04:05 PM Bug #2629 (New): Relationships between Weakley to USDA v 4.0 concepts
Bug assigned to Bob to scope for Xianhua Michael Lee
04:12 PM Bug #2628: Dynamic versioning
This bug is originally from "other ideas and observations from Peet and Weakley" Michael Lee
04:04 PM Bug #2628 (New): Dynamic versioning
As discussed earlier, we need to embed a start and stop date in ConceptMapper for each Weakley relationship. Ultimat... Michael Lee
04:12 PM Bug #2627: Nominal concepts should not overlap Weakley concepts
This bug is originally from "other ideas and observations from Peet and Weakley" Michael Lee
04:04 PM Bug #2627 (Closed): Nominal concepts should not overlap Weakley concepts
Continuing on the Sporobolus pinetorum example, there are some problems determining and mapping nominals where the ma... Michael Lee
04:12 PM Bug #2626: 45. Negative occurrences
This bug is originally from "other ideas and observations from Peet and Weakley" Michael Lee
04:03 PM Bug #2626 (New): 45. Negative occurrences
We need a new color on the map and a way to database negative occurrences. Some records in sources like Weakley and ... Michael Lee
04:12 PM Bug #2625: 44. Bug resolved
This bug is originally from "other ideas and observations from Peet and Weakley" Michael Lee
04:03 PM Bug #2625: 44. Bug resolved
resolved Michael Lee
04:03 PM Bug #2625 (Closed): 44. Bug resolved
placeholder Michael Lee
04:12 PM Bug #2624: 43. Paging through large families.
This bug is originally from "other ideas and observations from Peet and Weakley" Michael Lee
04:03 PM Bug #2624 (Closed): 43. Paging through large families.
If I go to a large family like Poaceae I see 10 pages and a next at the top right of the list of taxa. However, when... Michael Lee
04:12 PM Bug #2623: 42. TaxonProgress updates
This bug is originally from "other ideas and observations from Peet and Weakley" Michael Lee
04:02 PM Bug #2623 (Closed): 42. TaxonProgress updates
We need a way to keep the TaxonProgress table up to date. I think Lisa can do this if you rework the table a bit. T... Michael Lee
04:12 PM Bug #2622: Modify Specify to allow determination to concept
This bug is originally from "other ideas and observations from Peet and Weakley" Michael Lee
04:02 PM Bug #2622 (New): Modify Specify to allow determination to concept
We need to add some preliminary concept support to NCU Specify. The Kansas folks have agreed (in principle) to add a... Michael Lee
04:12 PM Bug #2621: 40. Concepts for CVS data?
This bug is originally from "other ideas and observations from Peet and Weakley" Michael Lee
04:01 PM Bug #2621 (New): 40. Concepts for CVS data?
Add support of concepts to CVS data. In short, migrate from all CVS being Weakley concepts to explicit statement of c... Michael Lee
04:12 PM Bug #2620: 39. Bug resolved
This bug is originally from "other ideas and observations from Peet and Weakley" Michael Lee
04:01 PM Bug #2620: 39. Bug resolved
was fixed by the time the original document came to Michael Lee Michael Lee
04:01 PM Bug #2620 (Closed): 39. Bug resolved
placeholder Michael Lee
04:12 PM Bug #2619: Systematic error in determination of nominals
This bug is originally from "other ideas and observations from Peet and Weakley" Michael Lee
04:00 PM Bug #2619 (Closed): Systematic error in determination of nominals
Carya ovata Weakley ? Carya ovata nominal should be
Carya ovata Weakley < Carya ovata nominal.
Perhaps this error ...
Michael Lee
04:12 PM Bug #2618: Server errors; incompatability with Windows 2000 OS
This bug is originally from "other ideas and observations from Peet and Weakley" Michael Lee
04:00 PM Bug #2618 (Closed): Server errors; incompatability with Windows 2000 OS
This bug is essentially a duplicate of Bug 2608 (originally #27)
Weakley asks “Why does the search crap out when...
Michael Lee
04:12 PM Bug #2617: 36. The Data Source tab
This bug is originally from "other ideas and observations from Peet and Weakley" Michael Lee
03:58 PM Bug #2617 (Closed): 36. The Data Source tab
The data source tab of the map should be combined with the legend so that the click on and off option is immediately ... Michael Lee
04:12 PM Bug #2616: 35. Click on county
This bug is originally from "other ideas and observations from Peet and Weakley" Michael Lee
03:58 PM Bug #2616 (Closed): 35. Click on county
“Sources” information you see when you click on a country record is awkward. First, it would be nicer if the win... Michael Lee
04:12 PM Bug #2615: Failure to map WEWO and other non-NCU series in Specify
This bug is originally from "other ideas and observations from Peet and Weakley" Michael Lee
03:58 PM Bug #2615 (Closed): Failure to map WEWO and other non-NCU series in Specify
The herbarium has a small but growing collection of NCSU collections. These appear on the map, but not in the list o... Michael Lee
04:12 PM Bug #2614: 33. Map source issues
This bug is originally from "other ideas and observations from Peet and Weakley" Michael Lee
03:57 PM Bug #2614 (Closed): 33. Map source issues
If I go to Acer floridanum and remove all data sources except the three from NCU, or all except UNC-Acer barbatum and... Michael Lee
04:12 PM Bug #2613: 32. Trilliaceae (Missing)
This bug is originally from "other ideas and observations from Peet and Weakley" Michael Lee
03:57 PM Bug #2613 (Closed): 32. Trilliaceae (Missing)
Trilliaceae is missing from the family search list (though you can find it as a suggestion next to Liliaceae). Michael Lee
04:12 PM Bug #2612: 31. Specimen data (fix typo)
This bug is originally from "other ideas and observations from Peet and Weakley" Michael Lee
03:56 PM Bug #2612 (Closed): 31. Specimen data (fix typo)
On detailed specimen data, replace "Determinator" with "Determiner" Michael Lee
04:12 PM Bug #2611: Help function text
This bug is originally from "other ideas and observations from Peet and Weakley" Michael Lee
03:56 PM Bug #2611 (New): Help function text
Peet & Weakley need to add help options Michael Lee
04:11 PM Bug #2610: 29. Sources of ambiguous records.
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:55 PM Bug #2610 (Closed): 29. Sources of ambiguous records.
---THIS BUG CO-OWNED BY XIANHUA--
Related to this is the question of whether to lump all ambiguous data under sing...
Michael Lee
04:11 PM Bug #2609: Erroneous assignment of ambiguous status
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:54 PM Bug #2609: Erroneous assignment of ambiguous status
RKP:
I don’t think you are correct as to what the software does. Acer rubrum is not a good example because Weakley...
Michael Lee
03:53 PM Bug #2609 (New): Erroneous assignment of ambiguous status
These last two issues are philosophical ones, rather than anything deriving from errors in the software or problems i... Michael Lee
04:11 PM Bug #2608: 27. Browser compatibility testing
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:53 PM Bug #2608 (Closed): 27. Browser compatibility testing
--THIS BUG TO BE PASSED TO XIANHUA IN TIME--
When using the Firefox browser, the map page gives an error message, ...
Michael Lee
04:11 PM Bug #2607: 26. Misfunction on back-to-query button
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:51 PM Bug #2607 (Closed): 26. Misfunction on back-to-query button
After displaying a distribution map and clicking “Go back to query result”, selecting a page number in the query ... Michael Lee
04:11 PM Bug #2606: 25. Complex searches
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:50 PM Bug #2606 (Closed): 25. Complex searches
The site currently does not allow one to combine plant name and geographic search functions, nor family and geographi... Michael Lee
04:11 PM Bug #2605: 24. Search all counties in a state
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:50 PM Bug #2605 (Closed): 24. Search all counties in a state
We think searching all counties within a state was an option previously. This seems useful.
RKP:
If I understand...
Michael Lee
04:11 PM Bug #2604: 23. County and state pulldowns
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:49 PM Bug #2604 (Closed): 23. County and state pulldowns
The state and county search pull-down menus revert to North Carolina, Alamance, almost immediately after clicking the... Michael Lee
04:11 PM Bug #2603: 22. Display county names
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:47 PM Bug #2603 (Closed): 22. Display county names
We like the idea of displaying county names by placing the cursor on the county when zoomed in one increment or more.... Michael Lee
04:11 PM Bug #2602: Document concept references in Weakley flora
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:47 PM Bug #2602 (Closed): Document concept references in Weakley flora
The “Z” abbreviation for Concept Sources on the Relationships page should give the specific reference.
RKP:
...
Michael Lee
04:11 PM Bug #2601: Explanation of relationship symbols “>” and “<” reversed
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:46 PM Bug #2601 (Closed): Explanation of relationship symbols “>” and “<” reversed
RKP:
Yes, a simple typo that needs to be corrected soon.
Michael Lee
04:11 PM Bug #2600: ID number on the specimen & images pages needs revision
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:46 PM Bug #2600 (Closed): ID number on the specimen & images pages needs revision
ID # given for specimens on the Images page appears to be an internal database number. Probably want accession numbe... Michael Lee
04:11 PM Bug #2599: 18. The "?" help buttons display pages with no content.
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:45 PM Bug #2599 (Closed): 18. The "?" help buttons display pages with no content.
[Bob co-owns this bug.]
RKP:
This is because Alan has been sitting on his lazy ass and doing absolutely nothing f...
Michael Lee
04:11 PM Bug #2598: 17. Apostrophes
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:44 PM Bug #2598 (Closed): 17. Apostrophes
SQL must have an aversion to apostrophes, replacing it with &apos; on the specimen information. This is probably not ... Michael Lee
04:11 PM Bug #2597: Display of cultivated records should be optional
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:43 PM Bug #2597 (Closed): Display of cultivated records should be optional
The distribution maps appear to treat cultivated specimen records the same as non-cultivated
RKP:
That is the cur...
Michael Lee
04:11 PM Bug #2596: 15. Alphabetize synonyms
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:43 PM Bug #2596 (Closed): 15. Alphabetize synonyms
When a search result displays synonyms, the synonyms listed under each recognized taxon are not displayed in alphabet... Michael Lee
04:11 PM Bug #2595: 14. The search box pick list seems to work inconsistently for species with infraspecific taxa.
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:42 PM Bug #2595 (Closed): 14. The search box pick list seems to work inconsistently for species with infraspecific taxa.
For example, Acer rubrum is given as a choice, along with its varieties; Quercus rubra is not shown, only its varieti... Michael Lee
04:11 PM Bug #2594: Home page explanation of atlas, including ambiguous records
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:42 PM Bug #2594 (Closed): Home page explanation of atlas, including ambiguous records
RKP:
We agree. Alan and I have agreed to write some text for this, both for the home page and for the “?” link...
Michael Lee
04:11 PM Bug #2593: 12. On the Home page, the green color for "Other data sources" is not the same green
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:41 PM Bug #2593 (Closed): 12. On the Home page, the green color for "Other data sources" is not the same green
On the Home page, the green color for “Other data sources” is not the same green used in the actual maps.
RKP:...
Michael Lee
04:11 PM Bug #2592: 11. The "Home" button should probably be changed to something like “About” ...
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:40 PM Bug #2592 (Closed): 11. The "Home" button should probably be changed to something like “About” ...
The “Home” button should probably be changed to something like “About” in order to more clearly identify the ... Michael Lee
04:11 PM Bug #2591: 10. Image thumbnails use large files
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:39 PM Bug #2591 (Closed): 10. Image thumbnails use large files
Displayed thumbnails for specimen images in the SE Flora web pages are full-sized JPEGs that are made to appear small... Michael Lee
04:11 PM Bug #2590: "get missing taxa" search
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:39 PM Bug #2590 (Closed): "get missing taxa" search
We think that selecting more than one data source in the “get missing taxa” search should work as an “and” fu... Michael Lee
04:11 PM Bug #2589: Concepts as the basis for returning specimens and images.
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:38 PM Bug #2589 (Closed): Concepts as the basis for returning specimens and images.
Some names treated as synonyms in Weakley do not appear when searched in the SE Flora pages. For example, searching ... Michael Lee
04:11 PM Bug #2588: Specimen & Image lists should include infraspecific taxa
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:38 PM Bug #2588 (Closed): Specimen & Image lists should include infraspecific taxa
When a species has recognized infraspecific taxa, the logic for distribution maps appears to be at odds with that for... Michael Lee
04:11 PM Bug #2587: Inability to search on taxa not treated by Weakley
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:37 PM Bug #2587 (New): Inability to search on taxa not treated by Weakley
At least some taxa treated as current in Specify do not show up when using the SE Flora search functions. For exampl... Michael Lee
04:11 PM Bug #2586: 5. Document the source of data for USDA PLANTS
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:36 PM Bug #2586 (Closed): 5. Document the source of data for USDA PLANTS
Distribution maps of USDA data on SE Flora atlas site sometimes do not match the county-level distribution maps on th... Michael Lee
04:11 PM Bug #2585: Allow ambiguous records only in states where taxon occurs
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:35 PM Bug #2585 (Resolved): Allow ambiguous records only in states where taxon occurs
In some cases records are treated as ambiguous for no apparent reason. For example, a search on Adiantum pedatum sho... Michael Lee
04:11 PM Bug #2584: 3. "Ambiguous" CVS and NCNHP records mapped differently from other ambiguous records
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:35 PM Bug #2584 (Closed): 3. "Ambiguous" CVS and NCNHP records mapped differently from other ambiguous records
Ambiguous data sources are mapped in yellow, except ambiguous CVS data sources, which are mapped in their usual Carol... Michael Lee
04:11 PM Bug #2583: Compile complex and undefined concept relationships
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:34 PM Bug #2583 (Closed): Compile complex and undefined concept relationships
RKP:
Concept mapping for Hymenocallis occidentalis var. occidentalis to K and to nominal is given as ? relative to H...
Michael Lee
04:11 PM Bug #2582: 2A. Show parents as ambiguous members
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:33 PM Bug #2582 (Closed): 2A. Show parents as ambiguous members
RKP:
A different but related issue is whether a CVS only map of Acer rubrum var. rubrum should show Acer rubrum with...
Michael Lee
04:11 PM Bug #2581: Children should occur in map of parent
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:31 PM Bug #2581 (In Progress): Children should occur in map of parent
Mapping of CVS data is not handled consistently for taxa with infraspecific members. For example, a search on Acer r... Michael Lee
04:11 PM Bug #2580: 1. Incorrect links to specimen images
contributed by Lisa Giencke & Stephen Seiberling
Comments by Bob Peet followed by RKP:
Michael Lee
03:13 PM Bug #2580 (Closed): 1. Incorrect links to specimen images
Herbarium specimen images located on ibiblio <http://www.ibiblio.org/botnet/flora/images/> appear to be correctly lin... Michael Lee
12:20 PM Bug #2574 (Resolved): update species in old archive database from Forbes
Forbes has added some new plots to the database, and the species codes need updating, as do older NC_Codes that were ... Michael Lee
 

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