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From 12/26/2004 to 01/24/2005

01/24/2005

02:57 PM Bug #1334: need installer for kepler
size of various components in installer reported in e-mail
-------
At the recent Kepler developer meeting in Junea...
Dan Higgins
02:55 PM Bug #1902: review all useablity reports for specific bugs not already entered
Completed for now. Dan Higgins
10:45 AM Bug #1914 (In Progress): Implement the 'most recently used' concept for workflows and actors
Dan Higgins
10:41 AM Bug #1913 (Resolved): Problem running workflow after it is saved
this was observed during the BEAM workshop. Dan Higgins
10:27 AM Bug #1912 (Resolved): cleanup ImageJ actor to avoid multiple copies of menus
The ImageJ actor needs to be better integrated into Kepler. Currently, the
control/menu screen is just opened from I...
Dan Higgins
10:05 AM Bug #1911 (In Progress): Provide real-time feedback/animation for workflow progress as a default
Currently, one can set the workflow to show progress for SDF and some other
types of directors. Request is to make t...
Dan Higgins
09:50 AM Bug #1910: Ports on datasource actors do no appear until actor is moved
Isn't this a duplicate? Rod Spears
09:39 AM Bug #1910 (Resolved): Ports on datasource actors do no appear until actor is moved
The ports on new datasource actors do not appear when actor is first dropped
onto the canvas. They do then appear af...
Dan Higgins
09:46 AM Bug #1906: Add reset/cancel button(s) for search in actor panel
Need to be able to reset (to null?) the search criteria. Also, we have a request
to have 'Cancel' button to terminate...
Dan Higgins

01/21/2005

12:45 PM Bug #1909 (Resolved): generalize cache manager to provide support for very large data files
existing persistent vector imp. for GIS can be ported to cache manager. Chad Berkley
12:38 PM Bug #1548: consolidating data access user interfaces
*** Bug 1887 has been marked as a duplicate of this bug. *** Chad Berkley
12:38 PM Bug #1887: Consolidate grid actors
dup
*** This bug has been marked as a duplicate of 1548 ***
Chad Berkley
12:32 PM Bug #1884: Enable drag and drop of ports and relations
need to get laura's opinion on how to redesign the toolbar effectively Chad Berkley
12:26 PM Bug #1189: add full support for EML2 comple textFormat in EML ingestor
We need the feature that to support eml201 too. Jing Tao
12:09 PM Bug #1332: GARP improvements and further implemenation
the bugs for this are all in the seek bugzilla.
*** This bug has been marked as a duplicate of 1720 ***
Chad Berkley
12:06 PM Bug #1908 (Resolved): GEON datasets wrappers
Create components from querying the GEON datasets using the GEON jdbc driver. Efrat Jaeger
11:58 AM Bug #1894: Add Table/Field to right side of select in querybuilder
add a table.field selector to the lower pane of the querybuilder to enable
column to column comparisons.
Chad Berkley
11:56 AM Bug #1893: Investigate Collapsing Data and Actor Tabs
Need Laura's input on whether this is a good idea. Chad Berkley
11:45 AM Bug #1901: Documentation system
*** Bug 1900 has been marked as a duplicate of this bug. *** Ilkay Altintas
11:06 AM Bug #1901: Documentation system
* All developers: Actor specific, automatically-generated actor documentation
o (quick sentence descrip...
Ilkay Altintas
11:05 AM Bug #1901: Documentation system
* Overall user guide (need a scientist to do this, not a devloper; possibly
hire a student; Ilkay's student; Sama...
Ilkay Altintas
11:05 AM Bug #1901 (Resolved): Documentation system
# Ilkay: Documentation system (Chad helps from SEEK side)
* Includes way to serialize docs for atomic and com...
Ilkay Altintas
11:45 AM Bug #1900: Documentation system
It is the same with the 1st comment in bug 1901.
*** This bug has been marked as a duplicate of 1901 ***
Ilkay Altintas
11:04 AM Bug #1900 (Resolved): Documentation system
# Ilkay: Documentation system (Chad helps from SEEK side)
* Includes way to serialize docs for atomic and com...
Ilkay Altintas
11:41 AM Bug #1907 (Resolved): New ports don't draw when added dynamically
Rod Spears
11:39 AM Bug #1906 (Resolved): Add reset/cancel button(s) for search in actor panel
Rod Spears
11:25 AM Bug #1905 (Resolved): jar file cleanup
cleanup the duplicate jars, etc. Jing Tao
11:18 AM Bug #1904 (Resolved): Nimrod implementation and templates
Design (semi-)native Nimrod actors and/or use the remote Nimrod portal. Create
reusable patterns/templates for Nimro...
Ilkay Altintas
11:18 AM Bug #1903 (Resolved): Wrappers to access ADN metadata
Efrat Jaeger
11:16 AM Bug #1334: need installer for kepler
check and report on size of various components in installer with view of
reducing installer size
Jing Tao
11:15 AM Bug #1892: Design an interface to optionally log inputs, parameters and intermediate results
Listen to director should also show tokens flowing so they can be logged (beware
large data flows)
Ilkay Altintas
11:15 AM Bug #1902 (Resolved): review all useablity reports for specific bugs not already entered
Jing Tao
11:11 AM Bug #1342: need R actor
create seversl specific R examplss Jing Tao
08:12 AM Bug #1750: Allow KAR files to include jar/class files
Below is a little info about dynamic class reloading in Vergil from Steve
Neuendorffer. Reloading a class is harder ...
Christopher Brooks

01/20/2005

12:09 PM Bug #1899 (Resolved): Implementation of grid-enabling kepler
This feature will make kepler can process distributed computing. The design
documentation is in bug 1891.
Jing Tao
11:56 AM Bug #1898 (Closed): Redesign the web service harvester and create design documentation
A document on how to do the harvesting to fit inn with the new dynamic actor
loading, annotation, etc. The harvested...
Ilkay Altintas
11:55 AM Bug #1897 (Resolved): Remove unused geon specific components and jars
GEON GSAT. ontobrowser display. Efrat Jaeger
11:44 AM Bug #1896 (Resolved): Get metadata of data package in data search result panel( tree structure)
After data package search, the result data set will be display in the result
panel as a tree structure. Here we onl...
Jing Tao
11:34 AM Bug #1895 (Resolved): remote actor repository
We decide we will put some actors in remote repository in order to reduce the
kepler deployment size. Currently, the...
Jing Tao
11:28 AM Bug #1894 (Resolved): Add Table/Field to right side of select in querybuilder
Rod Spears
11:27 AM Bug #1893 (Resolved): Investigate Collapsing Data and Actor Tabs
Should we do this? Rod Spears
11:13 AM Bug #1750: Allow KAR files to include jar/class files
Need to define the archive file format, including manifest structure and
contents, and define its naming convention. ...
Matt Jones
10:42 AM Bug #1750: Allow KAR files to include jar/class files
dynamic class loading issues also need to be worked out for this system. dan
will assist chad on this.
Chad Berkley
10:26 AM Bug #1750: Allow KAR files to include jar/class files
this is related to the kar files and dynamically searching for objects in the
kar files. we already have a service r...
Chad Berkley
11:05 AM Bug #1892 (Resolved): Design an interface to optionally log inputs, parameters and intermediate results
Some users want to save experiment information and intermediate results. First
update the listen to director to give...
Ilkay Altintas
11:02 AM Bug #1891: writedesign for staged implementation of grid-enabled kepler
In addition, we need to:
3) add in ability to dynamically load the workflows to be run as archive files
(.kar) that c...
Matt Jones
11:02 AM Bug #1891: writedesign for staged implementation of grid-enabled kepler
It will include a design for:
1) Nimrod/APST style grid jobs
2) Distributed kepler in 3 stages
a) separate client/...
Matt Jones
11:01 AM Bug #1891 (Resolved): writedesign for staged implementation of grid-enabled kepler
During the January 2004 meeting we discussed grid-enabling kepler. Matt and
Ilkay agreed to write this up as a desi...
Matt Jones
10:54 AM Bug #1890 (In Progress): Add query builder to generic db actor
Modify the db actor to populate the query builder schema and use it through
the look inside option. Find out how to...
Efrat Jaeger
10:52 AM Bug #1889 (Resolved): EML2 data source actor need handle mutiple data entity
Currently EML data source actor only handle one data entity. But eml2 metadata
can specify mutiple data entity (e.g....
Jing Tao
10:47 AM Bug #1888 (Resolved): changes to data access system to incorporate geon data
Get and Put interfaces for a unified data access for GEON and SEEK data. Efrat Jaeger
10:44 AM Bug #1548: consolidating data access user interfaces
The get function should be extened to accept sql query. So user can get partial
data object.
Jing Tao
10:16 AM Bug #1548: consolidating data access user interfaces
uniform put and get will be looked at by jing and efrat. Chad Berkley
10:43 AM Bug #1887 (Resolved): Consolidate grid actors
Provide a unified framework for grid actors, gridftp, scp, srb, etc.. Efrat Jaeger
10:38 AM Bug #1886 (Resolved): nightly build system revisited
we need to get the nightly build system working again. mainly, we need to be
able to test workflows and actors. th...
Chad Berkley
10:24 AM Bug #1586: Query engine implementation for data query in kepler
We use hsql as sql engine in kepler and use can set a text file as data source.
It works fine. The implemenation is i...
Jing Tao
10:24 AM Bug #1749: Global toggle for port name display
you should be able rt click an actor and select "show port names". there should
also be a menu item in the top level...
Chad Berkley
10:21 AM Bug #1584: Load data into relational db
A parser class which can generate sql command base on metadata was created. This
sql command can be excuted in the fu...
Jing Tao
10:20 AM Bug #1655: DIALOGS: Implement New UI for Sources Dialog (was "integrate ecogrid registry into kepler ecogrid client")
*** Bug 1695 has been marked as a duplicate of this bug. *** Chad Berkley
09:42 AM Bug #1655: DIALOGS: Implement New UI for Sources Dialog (was "integrate ecogrid registry into kepler ecogrid client")
Mostly done. need grid GUI. rod will work with laura on this. Chad Berkley
10:20 AM Bug #1695: Multi-node EcoGrid search for Kepler
dup of 1655
*** This bug has been marked as a duplicate of 1655 ***
Chad Berkley
10:17 AM Bug #1640: change kepler website to the seek wiki style
done Chad Berkley
10:13 AM Bug #1644: Image Display actor enhancements needed
now using imagej. Chad Berkley
10:12 AM Bug #1635: Update ant build so that documentation appears for new actors
fixed by dan Chad Berkley
10:06 AM Bug #1751: new mailing lists: kepler-users, kepler-votes
kepler-users is created. need to create kepler-votes. Chad Berkley
10:05 AM Bug #1587: Define and implement EcoGrid "dataQuery" method
adding efrat onto this bug. Chad Berkley
10:03 AM Bug #1885 (Resolved): Create new DataRelationsManager
This sits above the CacheManager and manages data that has been transformed
(loss less). This enables actors to asks...
Rod Spears
10:01 AM Bug #1579: need sub-sampling actor
finished in garp work Chad Berkley
10:01 AM Bug #1844: tool tip problems
look into whether this is a java problem or a kepler problem. Chad Berkley
09:59 AM Bug #1884 (In Progress): Enable drag and drop of ports and relations
you should be able to drag and drop the ports and relations instead of clicking
on the toolbar button and having the...
Chad Berkley
09:57 AM Bug #1339: add ecogrid interface to kepler
Currently in kepler we already added ecogrid interface to query data and
service. The functionality basiclly works. ...
Jing Tao
09:54 AM Bug #1340: define and implement kepler archive file format (kar)
we decided in kansas that we need a kepler archive file (kar) that will
encapsulate data and services as well as the ...
Chad Berkley
09:48 AM Bug #1553: Search Scope for dataset panel
Now the class is using ecogrid registry client and dynamic create search scope. Jing Tao
09:45 AM Bug #1766: Error with Ecogrid searches for JVM 1.4.2_05 and _06
Dan found we can set endorsed directory as a parameter to pass to JVM. So now we
set ./lib/jar/apache as endorsed dir...
Jing Tao
09:33 AM Bug #1338: find GIS system for inclusion in kepler
Efrat has also implemented ESRI GIS functionality into web services for use in
kepler. functionality is generally fo...
Chad Berkley
09:26 AM Bug #1338: find GIS system for inclusion in kepler
So far, we have linked several functions into kepler via grass and gdal. these
are jni calls into existing C code. ...
Chad Berkley
09:24 AM Bug #1883 (Resolved): Add LSID to Cache Manager
Rod Spears
09:23 AM Bug #1334: need installer for kepler
this bug should probably be to create an automated system for building an
installer. We will have to create an insta...
Chad Berkley
09:20 AM Bug #1882 (Resolved): Investigate UI Changes
Work with Laura to investigate the level of effort needed to make the UI changes
to Kepler (most of these changes im...
Rod Spears
09:19 AM Bug #1332: GARP improvements and further implemenation
moving to beta1 Chad Berkley
09:15 AM Bug #1881 (Resolved): Add intermediate pane to Query Builder
The interemediate pane consists of the upper from the Advanced Pane and the
lower pane from the Standard pane
Rod Spears

01/12/2005

10:16 AM Bug #1872 (Resolved): kepler possibly not picking up changes as entered
I'm not sure how to describe this bug -- but it appears that when we made
changes somehow Kepler was not picking th...
Laura Downey

01/11/2005

01:51 PM Bug #1846: can't resize left pane (actor/data tab section)
i think i actually fixed it this time... Chad Berkley

01/10/2005

03:32 PM Bug #1846: can't resize left pane (actor/data tab section)
I'm reopening this bug. I apparently only fixed it for vergil windows with
nothing on the canvas...I'll keep looking...
Chad Berkley

01/08/2005

06:34 PM Bug #1849: pasting operation pastes directly over copied object
I folded this change into the Ptolemy tree.
Edward said:
> Yes, I've been meaning to do this for some time...
> Anoth...
Christopher Brooks

01/07/2005

05:17 PM Bug #1826: keyboard binding to enter key on quick search broken
Should I make this change in the Ptolemy Tree as well?
It seems fairly safe.
Christopher Brooks
04:02 PM Bug #1849: pasting operation pastes directly over copied object
added a method in basicGraphFrame that offsets the pasted moml _location
property so that the pasted objects don't sh...
Chad Berkley

01/06/2005

02:45 PM Bug #1846: can't resize left pane (actor/data tab section)
Changed the split pane so that you can infinitely make the library pane larger.
it also now has the quick move butto...
Chad Berkley
11:03 AM Bug #1826: keyboard binding to enter key on quick search broken
I fixed this bug by changing the keyboard listener from looking at the window
focus. instead it now looks at the com...
Chad Berkley

01/05/2005

08:58 AM Bug #1835: create jni cookbook for creating jni actors
created the kepler/docs/tutorial/JNIHowTo.txt with detailed instructions on how
to create jni based actors.
Chad Berkley

01/04/2005

04:37 PM Bug #1829: saving workflow invalidates eml data
Code was added to make sure check the resultset is null in EML200DataSource class Jing Tao

01/03/2005

10:19 AM Bug #1851 (Resolved): save atomic and composite actors in the new actor library
Cutted and pasted from email conversation:
On 03.01.2005 18:34, "Chad Berkley" <berkley@nceas.ucsb.edu> wrote:
...
Wibke Sudholt
 

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