Activity
From 01/18/2005 to 02/16/2005
02/15/2005
- 05:24 PM Bug #1981 (New): Extend database query actor to handle datatypes
- Currently return a string representation of the output. Should be extended to
specify the type of the 'string' outp...
02/14/2005
- 01:19 PM Bug #1886: nightly build system revisited
- I have implemented a shell script based nightly build system that checks out
both ptII and kepler, compiles both of t...
02/09/2005
- 01:18 PM Bug #1912: cleanup ImageJ actor to avoid multiple copies of menus
- The code for interacting with ImageJ has been cleaned up and bugs fixes. It
seesm to be more stable now and multiple ... - 01:09 PM Bug #1905: jar file cleanup
- All known duplicate and obsolete jars have been removed
02/08/2005
- 09:25 AM Bug #1590: coding guidelines
- not going to address this now.
02/01/2005
- 01:14 PM Bug #1910: Ports on datasource actors do no appear until actor is moved
- dup
*** This bug has been marked as a duplicate of 1907 *** - 01:14 PM Bug #1907: New ports don't draw when added dynamically
- *** Bug 1910 has been marked as a duplicate of this bug. ***
01/27/2005
- 10:13 AM Bug #1906: Add reset/cancel button(s) for search in actor panel
- Laura,
I just added the "Reset" and put all theSearch components in a groupbox. If of
coarse needs all be redesigned...
01/26/2005
- 06:03 PM Bug #1901: Documentation system
- Nice job. I annotated the wiki page with additional comments -- when other
comments are in, could you integrate them... - 04:57 PM Bug #1901: Documentation system
- Please see http://kepler-project.org/Wiki.jsp?page=KeplerDocumentationFramework
01/25/2005
- 11:13 AM Bug #1924 (Resolved): Refactor actor and data display and search code
- Refactor the current actor and data display to have published interface for
interacting with it (i.e., don't pass in... - 11:11 AM Bug #1923 (New): Develop ontologies; engage KR group
- Develop some guidelines for what makes an ontology useful for specific SMS
applications so that the KR group can dev... - 11:07 AM Bug #1922 (New): Develop strategies for GUI extenstions for the semantics stuff
- Determine whether the "access points" at higher levels of the GUI can be
modified to suit our needs, rather than cha... - 11:06 AM Bug #1921 (New): Define the Kepler GUI components required for semantic mediation in Kepler
- For example, a new button for "semantic type check", a easy mechanism to add
semantic annotations to actors/ports an... - 11:02 AM Bug #1920 (New): Search based on semantic annotations of a dataset's attributes
- 11:00 AM Bug #1919 (New): choose language for semantic annotations in kepler archives
- 10:59 AM Bug #1918 (New): Search based on the semantic annotation of an actor's port
- 10:57 AM Bug #1917 (New): Design and implement workflow semantic type check.
- Design and implement a feature similar to the Kepler type-system check (which
occurs after a workflow is executed), ... - 10:54 AM Bug #1916 (New): Implement semantic search for data and actors in local files
- The goal of this work is to decouple the semantic search as much as possible
from Kepler so we can shift the impleme... - 10:49 AM Bug #1915 (New): Define a published interface for a semantic search service
- The purpose of this work is to define a generic api for "smart" search, which
implementation(s) will conform to. Eac...
01/24/2005
- 02:57 PM Bug #1334: need installer for kepler
- size of various components in installer reported in e-mail
-------
At the recent Kepler developer meeting in Junea... - 02:55 PM Bug #1902: review all useablity reports for specific bugs not already entered
- Completed for now.
- 10:45 AM Bug #1914 (In Progress): Implement the 'most recently used' concept for workflows and actors
- 10:41 AM Bug #1913 (Resolved): Problem running workflow after it is saved
- this was observed during the BEAM workshop.
- 10:27 AM Bug #1912 (Resolved): cleanup ImageJ actor to avoid multiple copies of menus
- The ImageJ actor needs to be better integrated into Kepler. Currently, the
control/menu screen is just opened from I... - 10:05 AM Bug #1911 (In Progress): Provide real-time feedback/animation for workflow progress as a default
- Currently, one can set the workflow to show progress for SDF and some other
types of directors. Request is to make t... - 09:50 AM Bug #1910: Ports on datasource actors do no appear until actor is moved
- Isn't this a duplicate?
- 09:39 AM Bug #1910 (Resolved): Ports on datasource actors do no appear until actor is moved
- The ports on new datasource actors do not appear when actor is first dropped
onto the canvas. They do then appear af... - 09:46 AM Bug #1906: Add reset/cancel button(s) for search in actor panel
- Need to be able to reset (to null?) the search criteria. Also, we have a request
to have 'Cancel' button to terminate...
01/21/2005
- 12:45 PM Bug #1909 (Resolved): generalize cache manager to provide support for very large data files
- existing persistent vector imp. for GIS can be ported to cache manager.
- 12:38 PM Bug #1887: Consolidate grid actors
- dup
*** This bug has been marked as a duplicate of 1548 *** - 12:38 PM Bug #1548: consolidating data access user interfaces
- *** Bug 1887 has been marked as a duplicate of this bug. ***
- 12:32 PM Bug #1884: Enable drag and drop of ports and relations
- need to get laura's opinion on how to redesign the toolbar effectively
- 12:26 PM Bug #1189: add full support for EML2 comple textFormat in EML ingestor
- We need the feature that to support eml201 too.
- 12:09 PM Bug #1332: GARP improvements and further implemenation
- the bugs for this are all in the seek bugzilla.
*** This bug has been marked as a duplicate of 1720 *** - 12:06 PM Bug #1908 (Resolved): GEON datasets wrappers
- Create components from querying the GEON datasets using the GEON jdbc driver.
- 11:58 AM Bug #1894: Add Table/Field to right side of select in querybuilder
- add a table.field selector to the lower pane of the querybuilder to enable
column to column comparisons. - 11:56 AM Bug #1893: Investigate Collapsing Data and Actor Tabs
- Need Laura's input on whether this is a good idea.
- 11:45 AM Bug #1901: Documentation system
- *** Bug 1900 has been marked as a duplicate of this bug. ***
- 11:06 AM Bug #1901: Documentation system
- * All developers: Actor specific, automatically-generated actor documentation
o (quick sentence descrip... - 11:05 AM Bug #1901: Documentation system
- * Overall user guide (need a scientist to do this, not a devloper; possibly
hire a student; Ilkay's student; Sama... - 11:05 AM Bug #1901 (Resolved): Documentation system
- # Ilkay: Documentation system (Chad helps from SEEK side)
* Includes way to serialize docs for atomic and com... - 11:45 AM Bug #1900: Documentation system
- It is the same with the 1st comment in bug 1901.
*** This bug has been marked as a duplicate of 1901 *** - 11:04 AM Bug #1900 (Resolved): Documentation system
- # Ilkay: Documentation system (Chad helps from SEEK side)
* Includes way to serialize docs for atomic and com... - 11:41 AM Bug #1907 (Resolved): New ports don't draw when added dynamically
- 11:39 AM Bug #1906 (Resolved): Add reset/cancel button(s) for search in actor panel
- 11:25 AM Bug #1905 (Resolved): jar file cleanup
- cleanup the duplicate jars, etc.
- 11:18 AM Bug #1904 (Resolved): Nimrod implementation and templates
- Design (semi-)native Nimrod actors and/or use the remote Nimrod portal. Create
reusable patterns/templates for Nimro... - 11:18 AM Bug #1903 (Resolved): Wrappers to access ADN metadata
- 11:16 AM Bug #1334: need installer for kepler
- check and report on size of various components in installer with view of
reducing installer size - 11:15 AM Bug #1892: Design an interface to optionally log inputs, parameters and intermediate results
- Listen to director should also show tokens flowing so they can be logged (beware
large data flows) - 11:15 AM Bug #1902 (Resolved): review all useablity reports for specific bugs not already entered
- 11:11 AM Bug #1342: need R actor
- create seversl specific R examplss
- 08:12 AM Bug #1750: Allow KAR files to include jar/class files
- Below is a little info about dynamic class reloading in Vergil from Steve
Neuendorffer. Reloading a class is harder ...
01/20/2005
- 12:09 PM Bug #1899 (Resolved): Implementation of grid-enabling kepler
- This feature will make kepler can process distributed computing. The design
documentation is in bug 1891. - 11:56 AM Bug #1898 (Closed): Redesign the web service harvester and create design documentation
- A document on how to do the harvesting to fit inn with the new dynamic actor
loading, annotation, etc. The harvested... - 11:55 AM Bug #1897 (Resolved): Remove unused geon specific components and jars
- GEON GSAT. ontobrowser display.
- 11:44 AM Bug #1896 (Resolved): Get metadata of data package in data search result panel( tree structure)
- After data package search, the result data set will be display in the result
panel as a tree structure. Here we onl... - 11:34 AM Bug #1895 (Resolved): remote actor repository
- We decide we will put some actors in remote repository in order to reduce the
kepler deployment size. Currently, the... - 11:28 AM Bug #1894 (Resolved): Add Table/Field to right side of select in querybuilder
- 11:27 AM Bug #1893 (Resolved): Investigate Collapsing Data and Actor Tabs
- Should we do this?
- 11:13 AM Bug #1750: Allow KAR files to include jar/class files
- Need to define the archive file format, including manifest structure and
contents, and define its naming convention. ... - 10:42 AM Bug #1750: Allow KAR files to include jar/class files
- dynamic class loading issues also need to be worked out for this system. dan
will assist chad on this. - 10:26 AM Bug #1750: Allow KAR files to include jar/class files
- this is related to the kar files and dynamically searching for objects in the
kar files. we already have a service r... - 11:05 AM Bug #1892 (Resolved): Design an interface to optionally log inputs, parameters and intermediate results
- Some users want to save experiment information and intermediate results. First
update the listen to director to give... - 11:02 AM Bug #1891: writedesign for staged implementation of grid-enabled kepler
- In addition, we need to:
3) add in ability to dynamically load the workflows to be run as archive files
(.kar) that c... - 11:02 AM Bug #1891: writedesign for staged implementation of grid-enabled kepler
- It will include a design for:
1) Nimrod/APST style grid jobs
2) Distributed kepler in 3 stages
a) separate client/... - 11:01 AM Bug #1891 (Resolved): writedesign for staged implementation of grid-enabled kepler
- During the January 2004 meeting we discussed grid-enabling kepler. Matt and
Ilkay agreed to write this up as a desi... - 10:54 AM Bug #1890 (In Progress): Add query builder to generic db actor
- Modify the db actor to populate the query builder schema and use it through
the look inside option. Find out how to... - 10:52 AM Bug #1889 (Resolved): EML2 data source actor need handle mutiple data entity
- Currently EML data source actor only handle one data entity. But eml2 metadata
can specify mutiple data entity (e.g.... - 10:47 AM Bug #1888 (Resolved): changes to data access system to incorporate geon data
- Get and Put interfaces for a unified data access for GEON and SEEK data.
- 10:44 AM Bug #1548: consolidating data access user interfaces
- The get function should be extened to accept sql query. So user can get partial
data object. - 10:16 AM Bug #1548: consolidating data access user interfaces
- uniform put and get will be looked at by jing and efrat.
- 10:43 AM Bug #1887 (Resolved): Consolidate grid actors
- Provide a unified framework for grid actors, gridftp, scp, srb, etc..
- 10:38 AM Bug #1886 (Resolved): nightly build system revisited
- we need to get the nightly build system working again. mainly, we need to be
able to test workflows and actors. th... - 10:24 AM Bug #1586: Query engine implementation for data query in kepler
- We use hsql as sql engine in kepler and use can set a text file as data source.
It works fine. The implemenation is i... - 10:24 AM Bug #1749: Global toggle for port name display
- you should be able rt click an actor and select "show port names". there should
also be a menu item in the top level... - 10:21 AM Bug #1584: Load data into relational db
- A parser class which can generate sql command base on metadata was created. This
sql command can be excuted in the fu... - 10:20 AM Bug #1695: Multi-node EcoGrid search for Kepler
- dup of 1655
*** This bug has been marked as a duplicate of 1655 *** - 10:20 AM Bug #1655: DIALOGS: Implement New UI for Sources Dialog (was "integrate ecogrid registry into kepler ecogrid client")
- *** Bug 1695 has been marked as a duplicate of this bug. ***
- 09:42 AM Bug #1655: DIALOGS: Implement New UI for Sources Dialog (was "integrate ecogrid registry into kepler ecogrid client")
- Mostly done. need grid GUI. rod will work with laura on this.
- 10:17 AM Bug #1640: change kepler website to the seek wiki style
- done
- 10:13 AM Bug #1644: Image Display actor enhancements needed
- now using imagej.
- 10:12 AM Bug #1635: Update ant build so that documentation appears for new actors
- fixed by dan
- 10:06 AM Bug #1751: new mailing lists: kepler-users, kepler-votes
- kepler-users is created. need to create kepler-votes.
- 10:05 AM Bug #1587: Define and implement EcoGrid "dataQuery" method
- adding efrat onto this bug.
- 10:03 AM Bug #1885 (Resolved): Create new DataRelationsManager
- This sits above the CacheManager and manages data that has been transformed
(loss less). This enables actors to asks... - 10:01 AM Bug #1579: need sub-sampling actor
- finished in garp work
- 10:01 AM Bug #1844: tool tip problems
- look into whether this is a java problem or a kepler problem.
- 09:59 AM Bug #1884 (In Progress): Enable drag and drop of ports and relations
- you should be able to drag and drop the ports and relations instead of clicking
on the toolbar button and having the... - 09:57 AM Bug #1339: add ecogrid interface to kepler
- Currently in kepler we already added ecogrid interface to query data and
service. The functionality basiclly works. ... - 09:54 AM Bug #1340: define and implement kepler archive file format (kar)
- we decided in kansas that we need a kepler archive file (kar) that will
encapsulate data and services as well as the ... - 09:48 AM Bug #1553: Search Scope for dataset panel
- Now the class is using ecogrid registry client and dynamic create search scope.
- 09:45 AM Bug #1766: Error with Ecogrid searches for JVM 1.4.2_05 and _06
- Dan found we can set endorsed directory as a parameter to pass to JVM. So now we
set ./lib/jar/apache as endorsed dir... - 09:33 AM Bug #1338: find GIS system for inclusion in kepler
- Efrat has also implemented ESRI GIS functionality into web services for use in
kepler. functionality is generally fo... - 09:26 AM Bug #1338: find GIS system for inclusion in kepler
- So far, we have linked several functions into kepler via grass and gdal. these
are jni calls into existing C code. ... - 09:24 AM Bug #1883 (Resolved): Add LSID to Cache Manager
- 09:23 AM Bug #1334: need installer for kepler
- this bug should probably be to create an automated system for building an
installer. We will have to create an insta... - 09:20 AM Bug #1882 (Resolved): Investigate UI Changes
- Work with Laura to investigate the level of effort needed to make the UI changes
to Kepler (most of these changes im... - 09:19 AM Bug #1332: GARP improvements and further implemenation
- moving to beta1
- 09:15 AM Bug #1881 (Resolved): Add intermediate pane to Query Builder
- The interemediate pane consists of the upper from the Advanced Pane and the
lower pane from the Standard pane
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