Kepler

03/19/2010

05:51 PM Bug #4898: WorkflowRun entityId lsid no longer incrementing after getting tagged

Also of note, if you restart Kepler and then use the View Run LSID context menu on such a tagged run, the derivedLSID... Derik Barseghian

05:40 PM Bug #4898 (Resolved): WorkflowRun entityId lsid no longer incrementing after getting tagged

Looks like after the refactor the WorkflowRun entityId lsid revision no longer gets bumped when a run gets tagged.
... Derik Barseghian

05:13 PM Bug #4897 (New): Arrow key navigation of Workflow Run Manager can stop working

When using the keyboard's arrow keys to move up or down the list of runs in the WRM on the Report Designer tab, when ... Derik Barseghian

05:08 PM Bug #4896 (Resolved): When exporting multiple runs only 1 ROML is placed in KAR

If you export multiples runs that have different report designs and instances from the Workflow Run Manager, you only... Derik Barseghian

04:10 PM Bug #4895 (Resolved): Exporting multiple runs gives duplicate entry errors

Exporting multiple runs from the Workflow Run Manager gui sometimes gives a series of duplicate entry error messages ... Derik Barseghian

03:05 PM Bug #4517: Verify that the search capabilities work

Aaron clarify the issue:
on the search result panel, right clicking the kar entry will bring a menu. One menu item i... Jing Tao

01:19 PM Bug #4517: Verify that the search capabilities work

It's probably Kepler keeping you from running a workflow without a top-level directory. Put a PN or SDF directory in ... Sean Riddle

12:21 PM Bug #4517: Verify that the search capabilities work

In this case, the kar file only has a composite actor at the result panel. Actually, I saved a workflow to the kar fi... Jing Tao

11:53 AM Bug #4517: Verify that the search capabilities work

You should be able to drag the contents of the kar file. If the kar file doesn't have anything in it, then there is ... Chad Berkley

11:37 AM Bug #4517: Verify that the search capabilities work

Chad:
What can we do to the kar search result? How can we open it?
Thanks,
Jing Jing Tao

11:26 AM Bug #4517: Verify that the search capabilities work

I don't think you're supposed to be able to drag the kar to the canvas. It's just a container. Chad Berkley

11:25 AM Bug #4517: Verify that the search capabilities work

I saved a workflow into local repository as a kar file. The search it on the components panel. The result shows:
Wor... Jing Tao

01:45 PM Bug #4894 (Resolved): One slave doesn't respond correctly when having concurrent requests.

When two running workflow are requesting concurrently to one slave, the executions will be twisted. Usually only one ... jianwu jianwu

01:28 PM Bug #4462: Component search in remote repositories not working

Personally, Aaron, I agree with you. I'll look into reorganizing the tree. Ben, Chad or others, let me know if you ar... Sean Riddle

01:21 PM Bug #4462: Component search in remote repositories not working

Sorry I wasn't following that thread... My input would be that if the search results are going to be displayed in th... Aaron Aaron

01:17 PM Bug #4462: Component search in remote repositories not working

I sent out an email about this a week ago. Ben and Chad thought this (semantic types under a KAR file) would be clear... Sean Riddle

12:03 PM Bug #4462: Component search in remote repositories not working

Also Sean, I don't think it makes sense to have the ontology hierarchy inside of the KAR search results. Can you ret... Aaron Aaron

11:59 AM Bug #4462: Component search in remote repositories not working

ummmm, the filename gets lost in metacat somewhere? You should just display the filename of the KAR file in the sear... Aaron Aaron

11:30 AM Bug #4462: Component search in remote repositories not working

Yes, I'm aware of that odd naming convention. The problem is, the KARs themselves don't have any other name on the re... Sean Riddle

11:27 AM Bug #4462: Component search in remote repositories not working

sean:
After searching the remote repository, the search result shows the docid, such as 8128:69:1 rather than the ka... Jing Tao

12:01 PM Bug #4869: changes made to workflows during dialogs before committing (Edit Parameters/Cancel)

Moving this bug to 2.x. It is not realistic to fix this for 2.0. Chad Berkley

10:42 AM Bug #4759: install dataturbine on gumstix

Done. Instructions can be found here:
https://kepler-project.org/developers/incubation/kepler-engineering-view-for-r... Daniel Crawl

03/18/2010

04:21 PM Bug #4888: Runs with 1 error don't highlight red in WRM

Did a couple quick tests and it works here, thanks. Nothing to check into the branch since r23398 is just changes to ... Derik Barseghian

03:47 PM Bug #4888: Runs with 1 error don't highlight red in WRM

I think it's better now after revision 23398 in trunk, let me know if that works and I'll check it into the branch as... Aaron Aaron

01:13 PM Bug #4888: Runs with 1 error don't highlight red in WRM

When is setErrorMessages() called after a run? Looks like the WRM is refreshed with WorkflowRun objects constructed ... Aaron Aaron

12:51 PM Bug #4888: Runs with 1 error don't highlight red in WRM

Sure. Open a blank worflow and hit run. This will cause one error, yet the run row won't be highlighted red. Derik Barseghian

12:46 PM Bug #4888: Runs with 1 error don't highlight red in WRM

Can you describe how to reproduce the bug. Aaron Aaron

01:58 PM Bug #3073: Heartbeat function for slaves

Either EcoGrid registry or Master should check the heartbeats from slaves. But the services at EcoGrid are to respond... jianwu jianwu

01:46 PM Bug #4893: WRP Kepler Frame vertically fills entire screen

I will take a look at this one. debi staggs

12:56 PM Bug #4893 (Resolved): WRP Kepler Frame vertically fills entire screen

On Windows XP with a screen resolution of 1600x1200 pixels, a new Kepler Frame (in WRP suite) stretches all the way f... Aaron Aaron

03/17/2010

04:00 PM Bug #4888 (Resolved): Runs with 1 error don't highlight red in WRM

Looks like the code for dealing with errors is a little broken after the recent refactor of WorkflowRun: Runs with 1 ... Derik Barseghian

03:31 PM Bug #3070: Need access control GUI for slaves

It is fixed at version 23388. With user access dialog, user access rule can be dynamically configured from GUI. jianwu jianwu

03:15 PM Bug #4887 (New): If a module is added to a configuration, the error message should include the fix

Apparently, the dataturbine module was added to the kepler trunk.
After doing
ant update
ant run
I got:
run:... Christopher Brooks

10:59 AM Bug #4884: Trying to log into IPCC anonymously causes Kepler to freeze, and require a force quit.

I just tried this under various circumstances and was not able to get it to crash. I'm going to close this for now, ... Chad Berkley

03/16/2010

04:31 PM Bug #4884: Trying to log into IPCC anonymously causes Kepler to freeze, and require a force quit.

Could have been because I did have several workflows open ? I just tried it now, and was successful. Maybe we can c... debi staggs

12:56 PM Bug #4884: Trying to log into IPCC anonymously causes Kepler to freeze, and require a force quit.

Just tried this in the 2.0 branch and it worked for me. Debi, were there any other circumstances that could have con... Chad Berkley

12:15 PM Bug #4884: Trying to log into IPCC anonymously causes Kepler to freeze, and require a force quit.

On wrp trunk on mac 10.5 with kepler launched from eclipse with VM arg: -Xmx1500m, I have all datasources selected ex... Derik Barseghian

12:06 PM Bug #4884: Trying to log into IPCC anonymously causes Kepler to freeze, and require a force quit.

I just tried to search "IPCC" on data tab (logged in anonymously), it worked fine to me. Can someone else make a try? Jing Tao

11:51 AM Bug #4884 (Resolved): Trying to log into IPCC anonymously causes Kepler to freeze, and require a force quit.

If you do a search from the data tab for 'IPCC' and then try to log in anonymously, it looks like it is trying to con... debi staggs

04:16 PM Bug #4761: install and configure SPAN software on gumstix

Derik and I visited the SPAN group on March 8; they installed their software on our gumstix. Using CRBasic programs w... Daniel Crawl

02:35 PM Bug #4885 (Resolved): Right-clicking on KARs in the component pane produces exception

This bug is there as of r23368.
Stacktrace follows:
[run] java.lang.Exception: LIID not found for CoreAct... Sean Riddle

01:54 PM Bug #3069: start slave from gui

It is fixed at Kepler trunk version 23363. Slave will be started when using startSlave or startSlaveAsyn commands or ... jianwu jianwu

01:52 PM Bug #3068: rmiregistry should be started programmatically

It is fixed at Kepler trunk version 23363. rmi registry will be done automatically when using startSlave or startSlav... jianwu jianwu

12:52 PM Bug #4864: Update paths in demo workflows

All demo workflows have been updated. There is now a system property DEMODIR that can be used in workflows to get th... Chad Berkley

03/15/2010

04:28 PM Bug #4517: Verify that the search capabilities work

The debug message has gone when I tried to reproduced the issue on comment 3. I tried both kepler 2.0 and trunk. Ben ... Jing Tao

03:34 PM Bug #4883: Need more command line options for kar files

created a stopgap soln in r23358 -- for headless for runs of kars, now writing resultant "run-kar" into KeplerData/wo... Derik Barseghian

01:51 PM Bug #4883 (New): Need more command line options for kar files

right now, we can execute a single workflow contained in a kar file with the -runwf command line switch. It would be... Chad Berkley

03:32 PM Bug #4744: load & save site layout to local kar file

additional items to save in KAR: CRBasic program, SPAN config files Daniel Crawl

03:29 PM Bug #4743: create gui to edit documentation metadata for component

It would be good to review the interfaces on the following web page when designing this interface:
https://kepler-pr... Daniel Crawl

01:07 PM Bug #4745: load & save site layout to metacat

save to metacat instead of dataturbine? Derik Barseghian

03/13/2010

04:34 PM Bug #4832: python actor outputting to disconnected composite output throws error

This might be a bug in provenance. I'll take a look. Daniel Crawl

08:09 AM Bug #4832: python actor outputting to disconnected composite output throws error

I took a look at this and confirmed that it is not a problem in Ptolemy or Kepler, but is reproducible in after doing... Christopher Brooks

03/12/2010

03:20 PM Bug #4877: The provenance recorder and tagging buttons on the toolbar need tooltips

Fixed in r23341. Sean Riddle

03:13 PM Bug #4773: Data processing on the GPP

Also, part of the SPAN stack can do processing / QA/QC. To what extent do we want to utilize this? I currently consid... Derik Barseghian

02:01 PM Bug #4333: KeplerLSID AuthNamespace web service

(In reply to comment #5)
> Alright https://kepler-project.org/ns/
> now works.
>
> http://library.kepler-project.or... Shaun Walbridge

12:51 PM Bug #4333: KeplerLSID AuthNamespace web service

Alright https://kepler-project.org/ns/
now works.
http://library.kepler-project.org/ns/
is still returning an error... Aaron Aaron

01:57 PM Bug #4847: Instantiating new actor from library gives error after restart

Unable to reproduce this bug in the 2.0 branch and my Mac. Please reopen if you're still seeing it. Aaron Aaron

01:41 PM Bug #4072: Rework Section 3

only thing left now is updating the screenshots. Derik Barseghian

01:40 PM Bug #4852: Documentation => Remove Customization doesn't work

fixed in r23336 (trunk) and r23339 (2.0). Derik Barseghian

11:01 AM Bug #4872: listen to director throws error

Oh, and it doesn't seem to cause any serious problems. Oliver Soong

11:00 AM Bug #4872: listen to director throws error

I'm also seeing something like this when I run, sometimes. I get:
java.lang.reflect.InvocationTargetException
... Oliver Soong

10:53 AM Bug #4881 (New): RExpression outputs [false] for any matrix of booleans

In an RExpression, add an output port "out" and use this R script:
out <- matrix(c(TRUE, FALSE, TRUE, FALSE), 2)
... Oliver Soong

10:45 AM Bug #4880 (New): RExpression cannot output matrix of strings

Create an RExpression with the output port "out" and for the script, use:
out <- matrix(letters, 2)
Looking at... Oliver Soong

10:37 AM Bug #4879 (New): RExpression replaces ) in string vectors with } when outputting to a port

In an RExpression, create the output port "out" and in the R script, use:
out <- c("(", ")")
Hooking this to a... Oliver Soong

03/11/2010

06:38 PM Bug #4852: Documentation => Remove Customization doesn't work

I've got a local fix for this that seems to be working pretty well. I'm going to test it some more before check in. Derik Barseghian

05:16 PM Bug #4333: KeplerLSID AuthNamespace web service

I've added
https://kepler-project.org/ns/
and
http://library.kepler-project.org/ns/
to the Kepler configuration in... Aaron Aaron

04:31 PM Bug #4333: KeplerLSID AuthNamespace web service

Added the namespace number generator jsp to the kepler skin in metacat at:
/style/skins/kepler/keplerAuthNamespac... Michael Daigle

03:27 PM Bug #4333: KeplerLSID AuthNamespace web service

So
kepler-project.org
is the plone site, and metacat is on
library.kepler-project.org
If we drop the jsp page into t... Aaron Aaron

04:37 PM Bug #4848: only first change to Customize Documentation shown in Documentation=>Display

Thanks Christopher. I updated kepler trunk to use ptolemy r57481 and made the required change to uiContextMenuMapping... Derik Barseghian

03:57 PM Bug #4848: only first change to Customize Documentation shown in Documentation=>Display

This bug:
Get Documentation on actor ports can give an NPE
https://chess.eecs.berkeley.edu/bugzilla/show_bug.cgi?i... Christopher Brooks

04:29 PM Bug #4076: Rework Section 7

With the Jargon.jar in Kepler, it can communicate with different SRB version. Since SRB has not been updated for two ... jianwu jianwu

04:25 PM Bug #4076: Rework Section 7

update section 7 to explain more about SRB actors, which are still working when the host and resource server are runn... jianwu jianwu

04:18 PM Bug #4877 (Resolved): The provenance recorder and tagging buttons on the toolbar need tooltips

The provenance recorder and tagging buttons, that are only present in certain suites, need tooltips like the other UI... Sean Riddle

03:25 PM Bug #4876 (New): RExpression - recursively handle arrays

Currently you can only have a list of lists - it would be nice to handle the Token->R->Token conversion recursively s... ben leinfelder

03:14 PM Bug #4864: Update paths in demo workflows

The installer now places the demos in ~/KeplerData/Kepler-2.0.0/demos. Paths should be updated to reflect that locat... Chad Berkley

01:48 PM Bug #4869: changes made to workflows during dialogs before committing (Edit Parameters/Cancel)

Edward and I talked about this and he reminded me that changes are actually
committed as you move between fields. I... Christopher Brooks

11:39 AM Bug #4869: changes made to workflows during dialogs before committing (Edit Parameters/Cancel)

> This happens when you just run Vergil:
> -drag a StringConst actor to the stage
> -edit the actor params
> -type so... Christopher Brooks

10:22 AM Bug #4869: changes made to workflows during dialogs before committing (Edit Parameters/Cancel)

Christopher,
The _handleClosing() method in ptolemy.actor.gui.EditParametersDialog
does not restore the values of ... ben leinfelder

10:08 AM Bug #4869: changes made to workflows during dialogs before committing (Edit Parameters/Cancel)

It looks like there is some oddness in Vergil with edit parameters.
I'll see about taking a look. Christopher Brooks

01:21 PM Bug #4873: Actors in repository library subtree are crammed together

Roger that, works well, closing. Aaron Aaron

10:32 AM Bug #4873: Actors in repository library subtree are crammed together

You probably know this, but you can use System.getProperty("os.name"); to fine the current OS for switching stuff lik... Chad Berkley

03/10/2010

06:16 PM Bug #4869: changes made to workflows during dialogs before committing (Edit Parameters/Cancel)

This happens when you just run Vergil:
-drag a StringConst actor to the stage
-edit the actor params
-type some value... ben leinfelder

04:16 PM Bug #4869: changes made to workflows during dialogs before committing (Edit Parameters/Cancel)

You can get into trouble if you Edit the actor parameters then press other buttons (other than Cancel and Commit):
-H... ben leinfelder

02:41 PM Bug #4869: changes made to workflows during dialogs before committing (Edit Parameters/Cancel)

from conf. call:
-verify that "cancel" does work for all normal cases
-isolate the sequence that caused the changes t... ben leinfelder

09:59 AM Bug #4869: changes made to workflows during dialogs before committing (Edit Parameters/Cancel)

It's that attributeChanged() method - I know the EML actor does a lot of things in that method, and I remember it bei... ben leinfelder

04:55 PM Bug #4873: Actors in repository library subtree are crammed together

I've added 2 pixels to the rowHeight of the AnnotatedPTree class. Now it would be nice to toggle this based on OS... Aaron Aaron

03:23 PM Bug #4874 (Resolved): Modify existing KARFile schema for use with KAR File Parser

Currently, we have a simple KARFile schema, but it needs to be modified so that it can be used with the KAR File Pars... debi staggs

02:24 PM Bug #4517: Verify that the search capabilities work

Need to look at the print out on the console when we search and download data on ecogrid. Jing Tao

02:00 PM Bug #4072: Rework Section 3

in r1179 - finished going through all of this section, fixed some typos, figure numbers and so forth. All that's left... Derik Barseghian

01:53 PM Bug #4684: Release tracking bug

Closing this bug because the current 2.0 targeted bugs are the release bugs. Chad Berkley

01:51 PM Bug #4070: Rework Section 1 and the GSG

Chapter 1 and the GSG are now updated. Chad Berkley

01:04 PM Bug #4868: Update R paths in documentation and demos

Just noticed that the GSG also uses workflows with RExpression actors (00-StatisticalSummary and 05-LinearRegression)... ben leinfelder

11:19 AM Bug #4872: listen to director throws error

This also happens when you use these context menus:
Open Actor
Documentation => Display
Listen to Actor
I'm also n... Derik Barseghian

04:17 AM Bug #4858: Open Actor on non-composite actors no longer works

Fixed. The problem was actually occurring at both the trunk and the 2.0 branch on a fresh checkout. Which makes sense. David Welker

03/09/2010

07:59 PM Bug #4858: Open Actor on non-composite actors no longer works

Christopher's comment#9 works for me (beneath, and adjusting for, the trunk with the wrp suite, at least). However if... Derik Barseghian

05:47 PM Bug #4070: Rework Section 1 and the GSG

I updated the future goals section, corrected the contributors list, and made additional edits throughout. Chad -- I... Matt Jones

04:26 PM Bug #4681: Check all file properties before release

Yep, svn:keywords and svn:style for all files:
bash-3.2$ svn proplist README.txt
Properties on 'README.txt':
svn:ke... Christopher Brooks

04:13 PM Bug #4681: Check all file properties before release

Which properties should we set? I propose keywords and eol-style as Derik said. Are there any others? I can write ... Chad Berkley

04:10 PM Bug #4803: Review the README file

Contributor list has been updated. All info in the README is now up to date. Version numbers need to be updated on ... Chad Berkley

04:08 PM Bug #4685: Create installers

Win/OSX/Lin Installers are now working and revised for the 2.0 release. Just version numbers (beta/rc/etc) need to b... Chad Berkley

04:05 PM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)

Pushing this to post 2.0 since I think it affects a small number of users. I don't think this should hold up the 2.0... Chad Berkley

03:53 PM Bug #4873 (Resolved): Actors in repository library subtree are crammed together

On Windows XP (maybe on other versions of windows) the actor icons are crammed tightly together when you open up Acto... Chad Berkley

03/08/2010

03:19 PM Bug #4864: Update paths in demo workflows

I updated $Kepler\outreach-2.0\resources\demos\getting-started\03-ImageDisplay.xml to fit the new directory name for ... jianwu jianwu

01:10 PM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)

Yes. But for the moment it has to take second place to meeting our own rather extreme schedule commitments. I think... Tom Parris

12:42 PM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)

Sounds good. Thanks, Tom. Would you consider creating a new GDAL module for kepler? If so, we would be willing to ... Chad Berkley

11:36 AM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)

OK. We're in the process of building the new suite of java language bindings now. We've gotten them to compile on a... Tom Parris

11:20 AM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)

Hi Tom, The instructions for building gdal in windows are here:
http://trac.osgeo.org/gdal/wiki/GdalOgrInJavaBuildIns... Chad Berkley

05:45 AM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)

Apologies for the delay. I've been travelling.
We obviously have the requisite hardware and can compile the GDAL C ... Tom Parris

11:22 AM Bug #4070: Rework Section 1 and the GSG

This bug can be closed once Matt has edited the future goals section of chapter 1. Chad Berkley

03/05/2010

02:19 PM Bug #4872: listen to director throws error

I believe this is more general; I've seen this error periodically lately when using other context menus. Derik Barseghian

02:14 PM Bug #4872 (Resolved): listen to director throws error

Add an SDF Director and the Tools->Listen to Director. An error pops up on the console:
Error creating action fo... Oliver Soong

12:29 PM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)

GDAL requires Microsoft Visual C++ to compile:
http://trac.osgeo.org/gdal/wiki/GdalOgrInJavaBuildInstructions
I don... Chad Berkley

11:25 AM Bug #4070: Rework Section 1 and the GSG

Getting Started Guide is complete. Chad Berkley

11:13 AM Bug #4070: Rework Section 1 and the GSG

I checked out chapter 1. We need to update section 1.4 with new future goals of kepler. I've asked Matt if he might... Chad Berkley

08:00 AM Bug #4070: Rework Section 1 and the GSG

I think we can close this bug, but Chad can you look it over before I do ?
Thanks. debi staggs

03/04/2010

09:37 PM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)

I created a universal binary that supports 32 and 64 bit JVMs under MacOSX.
The library may be found in ptII/lib/matl... Christopher Brooks

11:59 AM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)

The Ptolemy Matlab interface has similar problems, I'm looking at building 64bit
libraries for the Mac. On the Mac,... Christopher Brooks

09:34 AM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)

>1) Check all native library actors and recompile as needed for the following
>platforms, and recompile/install as ne... Chad Berkley

04:44 PM Bug #4802: KARs in KeplerData/workflows are being parsed on startup

commented out that bit of code - i believe it is redundant since it is also called in the open() method.
we should ke... ben leinfelder

02:23 PM Bug #4870 (New): searching for packages with the same name from multiple sources sometimes loses results

I have packages soong.4.14 and soong.28.5 on DEV and soong.4.15 and soong.28.9 on KNB. They all have the same title.... Oliver Soong

11:27 AM Bug #4858: Open Actor on non-composite actors no longer works

Sorry to be a Reopener, but this is still happening for me. I had Ben try it out, and it happens to him too. From Chr... Derik Barseghian

11:04 AM Bug #4869 (In Progress): changes made to workflows during dialogs before committing (Edit Parameters/Cancel)

When I make changes to an actor through the dialog, it seems like the changes are made to the workflow immediately, b... Oliver Soong

09:51 AM Bug #4078: Rework Section 9

Updated by madhu. Chad Berkley

09:21 AM Bug #4852: Documentation => Remove Customization doesn't work

It did work at one point. It just removed the kepler documentation and let it default to the ptolemy docs. If there... Chad Berkley

09:19 AM Bug #4811: No "Get Metadata" item on right-click menu after dragging an EML actor to the canvas

The action handler that supports figuring out which object has been clicked on seems to have been broken so in the in... Chad Berkley

09:13 AM Bug #4077: Rework Section 8

Added a new bug for updating the paths in the demos and docs. Closing this one. Chad Berkley

09:11 AM Bug #4868 (Resolved): Update R paths in documentation and demos

The demos path to the R demos should point to the R demos directory, not the outreach demos directory. Make sure thi... Chad Berkley

09:09 AM Bug #4081: Rework Appendix B

Ok, thanks, Debi. The only thing left to do on this is update screenshots then. I've made a separate bug (bug 4867)... Chad Berkley

09:07 AM Bug #4867 (Resolved): Update screenshots for the documentation

Any screen shots that are out of date should be retaken and updated in the documentation. Chad Berkley

03/03/2010

11:54 PM Bug #4082: New user guide section on modules/module manager

Made a new chapter (12) in the User Manual for modules. It is short and oriented towards users rather than developers... David Welker

11:47 PM Bug #4071: Rework Section 2

Will do this documentation update when we get installers created. David Welker

06:03 PM Bug #4811: No "Get Metadata" item on right-click menu after dragging an EML actor to the canvas

Hey Chad, is the Get Metadata context menu item supposed to be available for all actors? It looks like in 1.0 it was ... Derik Barseghian

05:52 PM Bug #4852: Documentation => Remove Customization doesn't work

I wonder if this ever worked in Kepler? It doesn't in 1.0. I'm having trouble finding where/how the documentation may... Derik Barseghian

01:24 PM Bug #4852: Documentation => Remove Customization doesn't work

This is kepler-specific, it works in vergil. Derik Barseghian

05:40 PM Bug #4848: only first change to Customize Documentation shown in Documentation=>Display

fixed also for Directors in r23268 (trunk) and r23269 (2.0) Derik Barseghian

04:29 PM Bug #4802: KARs in KeplerData/workflows are being parsed on startup

is that a "yes"? ben leinfelder

04:21 PM Bug #4797: Verify that multiple workflow/actor KARs work as expected

actor and director kars have been combined in head, closing this bug. Aaron Aaron

04:14 PM Bug #4858: Open Actor on non-composite actors no longer works

(In reply to comment #13)
> This happened for me today too, as I was going through testing the examples in
> the Docu... debi staggs

03:45 PM Bug #4858: Open Actor on non-composite actors no longer works

This happened for me today too, as I was going through testing the examples in the Documentation. debi staggs

04:12 PM Bug #4081: Rework Appendix B

(In reply to comment #5)
> (In reply to comment #4)
> > Originally, I had wanted to keep all of the screen shots cons... debi staggs

04:09 PM Bug #4081: Rework Appendix B

(In reply to comment #4)
> Originally, I had wanted to keep all of the screen shots consistent, however,
> it's going... debi staggs

03:42 PM Bug #4081: Rework Appendix B

Originally, I had wanted to keep all of the screen shots consistent, however, it's going to take a lot of work to do ... Chad Berkley

03:16 PM Bug #4081: Rework Appendix B

Reviewed the R appendix - some minor typos corrected, but no glaring omissions re: functionality. I was concerned abo... ben leinfelder

11:37 AM Bug #4081: Rework Appendix B

updated links to NCEAS R reference material. Links are as follows (thanks, Rick).
http://www.nceas.ucsb.edu/scicom... Chad Berkley

10:50 AM Bug #4081: Rework Appendix B

Updated links, proof-read. Need NCEAS links to work. Sent email to shaun and rick asking about missing pdfs.
http:... Chad Berkley

04:06 PM Bug #4077: Rework Section 8

only a couple minor things.
we do need to be aware of the act that the R examples are located in a the r module, not ... ben leinfelder

11:06 AM Bug #4077: Rework Section 8

updated all links. reviewed and revised content. asking ben to make sure we're not missing anything with the additi... Chad Berkley

03:41 PM Bug #4074: Rework Section 5

Done updating section 5. Chad Berkley

01:13 PM Bug #4865: Second time running a workflow by command line faild

Working now for Jing and I, closing. Derik Barseghian

01:08 PM Bug #4865: Second time running a workflow by command line faild

This was the problem Ben fixed the other day, but began recurring again probably because of my changes in r23263, but... Derik Barseghian

12:28 PM Bug #4865: Second time running a workflow by command line faild

I ran into this also. I think the LSID is getting put in the cache, then when you try to run the WF from the kar file... Chad Berkley

12:24 PM Bug #4865 (Resolved): Second time running a workflow by command line faild

I use the following command to run a workflow:
java -classpath build-area/lib/ant.jar:kepler.jar org.kepler.build.ru... Jing Tao

01:12 PM Bug #4860: GUI-free class for Workflow Run Export

Works now for Jing and I at r23265, closing. Derik Barseghian

12:49 PM Bug #3976: Update Documentation for 2.0 release

Chapter One of the user's guide links and screen shots have been updated. Asking Chad to review section 1.4 Future G... debi staggs

12:22 PM Bug #4864 (Resolved): Update paths in demo workflows

After RC1 is cut, update all file paths in the demo workflows to use the module-X.0 format. Chad Berkley

11:16 AM Bug #4076: Rework Section 7

The documentation is almost done. Several small issued to be discussed with Ilkay. jianwu jianwu

10:36 AM Bug #4078: Rework Section 9

Updated all links and proof-read. Sent an email to Ilkay asking her to review the content as I don't know enough abo... Chad Berkley

10:22 AM Bug #4078: Rework Section 9

I'll take this one. Chad Berkley

10:21 AM Bug #4079: Rework Section 10

done. Chad Berkley

03/02/2010

02:32 PM Bug #4858: Open Actor on non-composite actors no longer works

I did:
mkdir kepler-2.0
cd kepler-2.0
svn co https://code.kepler-project.org/code/kepler/branches/releases/release-... Christopher Brooks

11:22 AM Bug #4858: Open Actor on non-composite actors no longer works

Christopher,
your fix does not work for me. Is there something else you did? The ptolemy-8.0/src directory is alr... Chad Berkley

10:51 AM Bug #4858: Open Actor on non-composite actors no longer works

Hmm, the .classpath file does include the ptolemy src directory in the classpath. I'm currently looking into why thi... Chad Berkley

02:30 PM Bug #4851: KarEntryAttributes not saved in MANIFEST.MF/KarXML

fixed Aaron Aaron

01:31 PM Bug #4845: KAR dependencies not properly supporting module versions

Seems to be OK now. Aaron Aaron

09:54 AM Bug #4860 (Resolved): GUI-free class for Workflow Run Export

I'm trying to get the command-line execution working where I run a KAR and it produces a run KAR with the workflow/la... ben leinfelder

08:26 AM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)

GDAL probably just needs to be recompiled for this architecture, and the installer adapted to detect which architectu... Matt Jones

07:41 AM Bug #4859 (In Progress): GDALTranslate does not work on Windows 7 (64bit)

GDALJniGlue fails to intialize on Windows 64bit operating systems.
ptolemy.kernel.util.IllegalActionException: i... Tom Parris

07:31 AM Bug #3205: gdalTranslate actor crashes on bad format and won't work with all gdal formats

We're having a similar problem on the 2.0.0 trunk. This is a trivial workflow that attempts to convert an ERDAS IMG ... Tom Parris

03/01/2010

09:59 PM Bug #4826: intermittent exceptions displaying matrix tokens

Fixed.
The problem was that actor.gui.MatrixPane has a public variable JTable table.
This variable should only be use... Christopher Brooks

02:01 PM Bug #4826: intermittent exceptions displaying matrix tokens

This bug does not seem to affect functionality, so I'm moving it to 2.x.y Christopher Brooks

06:09 PM Bug #4858: Open Actor on non-composite actors no longer works

I can reproduce this under Kepler trunk with Eclipse.
The workaround is to add ptolemy/src to the classpath.
How I ... Christopher Brooks

05:39 PM Bug #4858: Open Actor on non-composite actors no longer works

Also happens to me from trunk from within eclipse. Maybe another eclipse user can see if it happens to them too... Derik Barseghian

05:06 PM Bug #4858: Open Actor on non-composite actors no longer works

Hmm, reopening. So even with the ptolemy revision confusion aside, on a fresh checkout of the branch, this error does... Derik Barseghian

03:08 PM Bug #4858: Open Actor on non-composite actors no longer works

Thanks guys. I wasn't seeing a bunch of ptolemy updates from within eclipse. I've updated with ant update, and it's w... Derik Barseghian

02:54 PM Bug #4858: Open Actor on non-composite actors no longer works

Oh, I should also note that I updated the context menu configuration last week to match up with some new ptolemy menu... Chad Berkley

02:50 PM Bug #4858: Open Actor on non-composite actors no longer works

I just tried this with the 2.0 branch and it worked for me. Have you tried a fresh checkout, derik? Also, are you u... Chad Berkley

02:36 PM Bug #4858: Open Actor on non-composite actors no longer works

Hey Christopher,
Thanks, it works for me on trunk too, I should've tried that and also specified: this is currently a... Derik Barseghian

02:34 PM Bug #4858: Open Actor on non-composite actors no longer works

[Sorry, committed before being done].
I can't reproduce this. I'm running the Kepler devel tree
from the ptII head.... Christopher Brooks

02:22 PM Bug #4858: Open Actor on non-composite actors no longer works

Hmm, this works for me in the Kepler devel tree and the Ptolemy tree.
I'm running from the Christopher Brooks

01:44 PM Bug #4858 (Resolved): Open Actor on non-composite actors no longer works

Drag a Display to canvas, right-click Open Actor and you'll get an Error popup:
Cannot find a tableau or the source ... Derik Barseghian

11:57 AM Bug #4857: Search on ecogrid server does not return proper results

Fixed in r23242. Changed the ecogrid XML query document in a similar way to the way Ben told me to modify the query f... Sean Riddle

11:50 AM Bug #4857 (Resolved): Search on ecogrid server does not return proper results

I uploaded a test workflow called count.kar (LSID = 8097.16.1) to the Kepler dev repository. I then searched on term ... Sean Riddle

11:15 AM Bug #4848: only first change to Customize Documentation shown in Documentation=>Display

I've filed a bug and an ER against vergil re: an NPE on Get Documentation on actor ports, and Customize Documentation... Derik Barseghian

02/27/2010

04:28 PM Bug #4802: KARs in KeplerData/workflows are being parsed on startup

ReportLayoutKAREntryHandler.cache
WorkflowManager.getWorkflows
WorkflowManager.initialize
ObjectManager.getObjectRevi... Aaron Aaron

02/26/2010

08:27 PM Bug #4848: only first change to Customize Documentation shown in Documentation=>Display

fixed for workflows and actors in r23238. Derik Barseghian

05:10 PM Bug #4848: only first change to Customize Documentation shown in Documentation=>Display

The problem is with calling Show Documentation (which calls GetDocumentationAction) twice.
On the first call to Get... Derik Barseghian

07:09 PM Bug #4852 (Resolved): Documentation => Remove Customization doesn't work

If you Customize Documentation on a workflow or an actor, Remove Customization doesn't remove it. Derik Barseghian

03:26 PM Bug #4802: KARs in KeplerData/workflows are being parsed on startup

I can see the cache() method will eventually call the ObjectManager. is this the culprit that forces parsing of the m... ben leinfelder

03:13 PM Bug #4851: KarEntryAttributes not saved in MANIFEST.MF/KarXML

Yeah, looks like KARBuilder.prepareManifest() only adds certain attributes to the Manifest. Really it should enforce ... Aaron Aaron

03:09 PM Bug #4851 (Resolved): KarEntryAttributes not saved in MANIFEST.MF/KarXML

I'm trying to add some key metadata entries to the KAREntries I provide in the ReportInstanceKAREntryHandler. I can s... ben leinfelder

02:29 PM Bug #4828: Uploading a top-level workflow to the repository fails

Now the DOCTYPE is screened out from fragments prior to constructing the larger KAR XML document. Sean Riddle

01:31 PM Bug #4828: Uploading a top-level workflow to the repository fails

targeting for 2.0 ben leinfelder

02:05 PM Bug #4797: Verify that multiple workflow/actor KARs work as expected

Also combined directors-2.0 kars into one kar. do a
"rm ~/KeplerData/modules/directors-2.0/kar/*.kar"
and also an ... Aaron Aaron

01:46 PM Bug #4797: Verify that multiple workflow/actor KARs work as expected

I have combined all the actors in the actors-2.0 module into 1 kar. Recommended to "rm ~/KeplerData/modules/actors-2... Aaron Aaron

11:54 AM Bug #4799: "Login Anonymously" gave an error during the data search

Refactored the anonymous login configuration to be at the Domain class rather than the Repository class.
-adds config... ben leinfelder

10:53 AM Bug #4799: "Login Anonymously" gave an error during the data search

Ugh. We still have two different systems for managing our various "remote services":
-Repositories (components)
-Ecog... ben leinfelder

10:38 AM Bug #4799: "Login Anonymously" gave an error during the data search

I figured it out!
when you try to use the "Login Anonymously" button, the authentication service will try to look of... ben leinfelder

09:16 AM Bug #4849: ant eclipse fails

Fixed. Forgot to add some new files to the repository. David Welker

09:10 AM Bug #4849: ant eclipse fails

I should mention this is on trunk ben leinfelder

09:10 AM Bug #4849 (Resolved): ant eclipse fails

[eclipse] java.io.FileNotFoundException: /Users/leinfelder/workspace_kepler/kepler/build-area/resources/eclipse/Ptole... ben leinfelder

02/25/2010

05:55 PM Bug #4848 (Resolved): only first change to Customize Documentation shown in Documentation=>Display

If I right-click Documentation=>Customize Documentation on an actor, I can change the documentation, and Documentatio... Derik Barseghian

05:28 PM Bug #4337: 1.0 -> 2.0 upgrade issues tracking bug

All tasks are closed. Closing this tracking bug. Chad Berkley

03:27 AM Bug #4337: 1.0 -> 2.0 upgrade issues tracking bug

Are there any remaining tasks for this bug? David Welker

05:27 PM Bug #4811: No "Get Metadata" item on right-click menu after dragging an EML actor to the canvas

Fixed in rev 23213. Chad Berkley

05:10 PM Bug #4847 (Resolved): Instantiating new actor from library gives error after restart

Steps:
- On 2.0 branch, drag out e.g. an ImageJ actor, and e.g. change its name and customize its documentation
- r... Derik Barseghian

03:45 PM Bug #4846: error opening kar from local repository

I also noticed that, after restarting Kepler, the KAR and local repository *are* listed in the components pane, but t... Oliver Soong

03:38 PM Bug #4846: error opening kar from local repository

I just noticed, but I'm getting 2 of these errors every time I save to the local repository:
ERROR (org.kepler.obje... Oliver Soong

02:50 PM Bug #4846 (Resolved): error opening kar from local repository

This is with wrp at r23202. I deleted .kepler and KeplerData. I create a trivial workflow (default SDF and RExpress... Oliver Soong

03:17 PM Bug #3976: Update Documentation for 2.0 release

All of the screenshots and hyperlinks for the getting started guide have been updated. debi staggs

02:37 PM Bug #4845 (Resolved): KAR dependencies not properly supporting module versions

The KAR dependencies are not being properly matched to module names and versions. Aaron Aaron

01:28 PM Bug #4801: out of memory

There's another way to trigger a memory leak. I'm not sure if these are 2 different leaks or 2 symptoms of the same ... Oliver Soong

11:55 AM Bug #4727: Cannot compile Ptolemy from IntelliJ

I have fixed this so that Intellij's class path is determined in a manner more similar to the build. David Welker

11:54 AM Bug #4709: error updating ptolemy/src

I have fixed this so that if ptolemy/src is not present due to a problem with checkout, "ant update" will attempt to ... David Welker

11:37 AM Bug #4831: Kepler (trunk) couldn't save a workflow to a remote repository as kar file

I just tried and it works. Jing Tao

08:44 AM Bug #4830: Kepler exit when using echoGridWriter actor with the wrong xml path.

Jing, my test on 2.0 branch works. Thanks. jianwu jianwu

03:11 AM Bug #3027: jar handling issues

This older bug can be closed. Multiple versions of the same jar can now be handled through either overrides or a spec... David Welker

02/24/2010

05:54 PM Bug #4830: Kepler exit when using echoGridWriter actor with the wrong xml path.

This issue was caused on PutServiceClient.java. Aprivate method on this class called System.exit(1) when it caught an... Jing Tao

01:50 PM Bug #4830: Kepler exit when using echoGridWriter actor with the wrong xml path.

make it available at kepler-dev. jianwu jianwu

12:38 PM Bug #4830 (Resolved): Kepler exit when using echoGridWriter actor with the wrong xml path.

The message for the execution of the attached workflow.
[run] EcogridUtils: The time to create instance is =... jianwu jianwu

01:45 PM Bug #4811: No "Get Metadata" item on right-click menu after dragging an EML actor to the canvas

Fixed the missing director rt. click menu items. this was due to a menu reorg on the ptII side. Still working on th... Chad Berkley

11:11 AM Bug #4811: No "Get Metadata" item on right-click menu after dragging an EML actor to the canvas

On wrp suite (kepler trunk), I saw the "Get Metadata" menu item after right click an eml actor on an existed workflow... Jing Tao

10:26 AM Bug #4811: No "Get Metadata" item on right-click menu after dragging an EML actor to the canvas

The right click menu works if you rt click on the item in the library. I'll see if I can add this to the right click... Chad Berkley

01:11 PM Bug #4832: python actor outputting to disconnected composite output throws error

I take back the part about it affecting the 2.0 branch. I can't keep my windows straight. It is affecting wrp. Oliver Soong

01:09 PM Bug #4832: python actor outputting to disconnected composite output throws error

This seems to affect the 2.0 Kepler branch. Oliver Soong

01:07 PM Bug #4832 (Resolved): python actor outputting to disconnected composite output throws error

I have a composite actor with an output port. Inside, I have an Expression passing a token to the default python act... Oliver Soong

12:41 PM Bug #4831 (Resolved): Kepler (trunk) couldn't save a workflow to a remote repository as kar file

On Kepler(trunk):
1. Open the eml-simple-plot.moml file.
2. Select my host as a saving destination (click source bu... Jing Tao

10:10 AM Bug #4517: Verify that the search capabilities work

To close this bug, close bug 4462 and bug 4799 Chad Berkley

10:08 AM Bug #4517: Verify that the search capabilities work

Except bug 4462 and 4799, the others function seems working Jing Tao

10:05 AM Bug #4799: "Login Anonymously" gave an error during the data search

The error message has gone. However,the GUI showed three times when I kept clicking the "Login Anonymously" button. ... Jing Tao

02/23/2010

06:22 PM Bug #4829 (New): User log4j files

We had a request that users' be able to maintain their own log4j files, e.g. in an environment where many users use t... Derik Barseghian

03:17 PM Bug #4828 (Resolved): Uploading a top-level workflow to the repository fails

Uploading a top-level workflow attempts to put the whole workflow, complete with doctype tag, into the KAR XML it the... Sean Riddle

12:58 PM Bug #4010: RExpression2 - tracking for backwards compatibility

First ... apologies. I just submitted an RExpression bug that you've already fixed in Rexpression2 (column major matr... Tom Parris

12:38 PM Bug #4827 (New): RExpression does not handle matrix tokens correctly.

I've attached a simple workflow that demonstrates a bug in the way the RExpression actor translates Kepler/Ptolemy ma... Tom Parris

10:41 AM Bug #4820: Out of memory Error: Error creating alternateGetMoml!

I think this was a problem with left over data from the provenance suite. I cannot replicate this. Closing for now.... Chad Berkley

10:40 AM Bug #4801: out of memory

I am not able to reproduce this in the kepler suite. I think this is a WRP/Provenance problem. I'm going to retarge... Chad Berkley

10:36 AM Bug #4826: intermittent exceptions displaying matrix tokens

I saw this in Ptolemy, so it is a Ptolemy bug, not a Kepler bug. I'll see if I can fix it before the final version of... Christopher Brooks

10:23 AM Bug #4826: intermittent exceptions displaying matrix tokens

Forgot to specify platform. Tom Parris

10:22 AM Bug #4826 (Resolved): intermittent exceptions displaying matrix tokens

I experience intermittent exceptions displaying matrix tokens in a simple workflow. The problems are more frequent w... Tom Parris

10:35 AM Bug #4516: Module Manager needs ability to install modules needed by KARs

Since 4483 is pushed to 2.x, pushing this one as well. most of the functionality is there, we just need a bit more t... Chad Berkley

10:34 AM Bug #4685: Create installers

verify that R can not be installed without not installing the entire R module. Chad Berkley

10:33 AM Bug #4803: Review the README file

Need to get a new contributor list. Chad Berkley

10:24 AM Bug #4799: "Login Anonymously" gave an error during the data search

this is not fixed for me. After merging the changes from the trunk to the branch, I have to click the "login anonymo... Chad Berkley

09:46 AM Bug #4578: tracking bug for changes to .kepler

Since 4785 has been closed, I don't think we're going to make any more changes to .kepler, so I'm closing this tracki... Chad Berkley

02/22/2010

04:11 PM Bug #4820: Out of memory Error: Error creating alternateGetMoml!

O.K. neglected to mention that I had cleared the KeplerData > modules > provenance data. Maybe that could have someth... debi staggs

04:05 PM Bug #4820: Out of memory Error: Error creating alternateGetMoml!

In Kepler. But just downloaded the new build for 2.0 branch, and now cannot replicate it. Will try a few more times... debi staggs

03:59 PM Bug #4820: Out of memory Error: Error creating alternateGetMoml!

What suite is this happening in? Kepler or WRP or other? Chad Berkley

03:06 PM Bug #4820: Out of memory Error: Error creating alternateGetMoml!

How big is the KeplerData folder (specifically, KeplerData/modules/provenance), and if you try this again, do you get... Oliver Soong

02:45 PM Bug #4820 (Resolved): Out of memory Error: Error creating alternateGetMoml!

While stepping through the examples in the documentation, I did the following:
1. Clicked on the Data tab and did ... debi staggs

03:57 PM Bug #4483: Module dependencies in MoML files

pushing to post 2.0 release. Chad Berkley

02:34 PM Bug #4802: KARs in KeplerData/workflows are being parsed on startup

This only seems to be a problem with KARS that use the ReportLayoutKAREntryHandler. Aaron Aaron

01:54 PM Bug #4261: Long file name on windows

Just an update on the long-line length problem.
The issue is that certain file systems have limits
and svn makes the ... Christopher Brooks

01:44 PM Bug #4799: "Login Anonymously" gave an error during the data search

This has now been fixed. debi staggs