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From 04/09/2010 to 05/08/2010

05/08/2010

08:15 PM Bug #4994: ant installer fails with "Invalid directory 'dir' ... outreach-2.0.0/resources"
Until I can build an installer, I can't fix bug #4990. Christopher Brooks
08:14 PM Bug #4994 (Resolved): ant installer fails with "Invalid directory 'dir' ... outreach-2.0.0/resources"
Working from the instructions at
https://kepler-project.org/developers/teams/build/building-kepler-installers
and u...
Christopher Brooks
08:03 PM Bug #4281: ant update produces message about running svn cleanup
I was just bitten by this bug again.
The problem is that under Windows, if build-area gets updated by someone
else, t...
Christopher Brooks
06:47 PM Bug #4993 (Resolved): Kepler-2.0 cannot be built under windows because of apple-extensions
The instructions at
https://kepler-project.org/developers/teams/build/systems/build-system/extension-build-system
f...
Christopher Brooks
06:43 PM Bug #4992 (Resolved): In a shared installation, how does the user get the demo?
The intro screen says
"All listed demos are in the KeplerData/Kepler-2.0.Demos/getting-started which can be found ...
Christopher Brooks
06:39 PM Bug #4991 (Resolved): Kepler-2.0-RC2 fails to start for a non-admin user after admin install
I installed Kepler as admin under Windows 2003 and the installation works
fine.
If I try to start Kepler as a non-a...
Christopher Brooks
06:21 PM Bug #4977: Can't associate multiple sets of reporting artifacts in one kar with different executions
Changing the title of this bug and adding dependency.
To reiterate - if it were possible to make a KAR with multipl...
Derik Barseghian
06:18 PM Bug #4990 (Resolved): Ptolemy documentation missing
The Kepler-2.0-RC2 installer does not include files like ptII/doc/expression.pdf
To see this
1) start up Kepler, ...
Christopher Brooks
06:09 PM Bug #4973: Save Archive sometimes saves more or less than it should in WRP
Can't get this to happen anymore, closing. Derik Barseghian
05:59 PM Bug #4987: RC2 cannot find R pkg
The Mac installer (https://code.kepler-project.org/code/kepler/releases/installers/Kepler-2.0-RC2-osx.jar) could not ... Christopher Brooks
05:56 PM Bug #4989 (Resolved): The installer should offer to start Kepler
The installer should offer to start Kepler upon completion so that
the user does not have to go digging for it.
See...
Christopher Brooks
05:45 PM Bug #4984: user mailing list is wrong
Also, we should be very precise about the version.
The installer intro screen says
Kepler 2.0 RC2
but when I install...
Christopher Brooks
05:40 PM Bug #4984: user mailing list is wrong
Also, the date in the installer is wrong, it says "April 29, 2010". Christopher Brooks
05:44 PM Bug #4978: Create additional 'module' property for any menu entries that are inserted by non-core modules
The configuration system already has a mechanism to remove properties when the module that added them is no longer pr... Daniel Crawl
05:28 PM Bug #4988 (Resolved): Instantiating a wf as a composite that has a tag doesn't work as expected
If I have a workflow, drag a composite onto canvas, open the composite and tag it, then close the composite, I see th... Derik Barseghian
05:05 PM Bug #4943: RC5 Installer Tracking Bug
Hi Jing, I agree with you. Normally users do not use 'run as administrator' much. jianwu jianwu

05/07/2010

04:59 PM Bug #4943: RC5 Installer Tracking Bug
Yep, if I right click the icon and choose "Run as the Administrator", kepler will start. RC1 doesn't need this. I thi... Jing Tao
03:58 PM Bug #4943: RC5 Installer Tracking Bug
Jing, I have to right click the icon and use 'Run as administrator', or start cmd using 'Run as administrator' and ex... jianwu jianwu
03:41 PM Bug #4943: RC5 Installer Tracking Bug
Jianwu, can you start the kepler on windows 7. I can installed it successfully. But it can't be started.
Last time, ...
Jing Tao
03:19 PM Bug #4943: RC5 Installer Tracking Bug
On window 7, kepler desktop icon us a blank page. Jing Tao
11:57 AM Bug #4943: RC5 Installer Tracking Bug
It works when I installed it in Windows 7 64 bit. One only issue I found is that the generated desktop icon is not Ke... jianwu jianwu
04:53 PM Bug #4524: no prompt to save a changed report
This dialog also comes up in at least two cases when it shouldn't:
1) don't have a report design underway
2) when cha...
Derik Barseghian
02:32 PM Bug #4987: RC2 cannot find R pkg
Same thing happened to me. Jing Tao
02:01 PM Bug #4987 (Resolved): RC2 cannot find R pkg
The RC2 installer can't find the R pkg: it's looking in r-2.0 but should be r-2.0.0. Daniel Crawl
02:06 PM Bug #4985: problem with workflows using Rexpression on Windows XP
I found two workflows can not be executed on Windows 7 64 bit: Kepler-2.0.0-Demos\demos\R\r-2.0.0\demos\R\localFile_t... jianwu jianwu
01:31 PM Bug #4985 (Resolved): problem with workflows using Rexpression on Windows XP
On Windows XP workflows using RExpression don't finish execution. This happens in RC2 and wrp trunk on XP, the consol... Derik Barseghian
01:36 PM Bug #4986 (Resolved): Problem with property DEMODIR on Windows XP
On Windows XP I have problems with workflows that have paths like 03-ImageDisplay.xml. I think this is an issue with ... Derik Barseghian
12:03 PM Bug #4938: Reporting suite no longer works on its own
If reporting is no longer working independently, it should be converted from a suite to an ordinary module. That invo... David Welker
11:16 AM Bug #4938: Reporting suite no longer works on its own
I think it would be really optimal to have Reporting work on its own when we release wrp-2.0. This would be more cons... Derik Barseghian
09:25 AM Bug #4938: Reporting suite no longer works on its own
Hi Derik,
I see that you were working on this, are we intending to do take the steps you described in your last comm...
debi staggs
11:37 AM Bug #4956: make sure matlab works with installed version of kepler 2.0
works for me on 32 bit linux. closing the bug. jianwu jianwu
11:06 AM Bug #4956: make sure matlab works with installed version of kepler 2.0
works for me on 32 bit mac and windows with RC2 Daniel Crawl
11:10 AM Bug #4983: cannot run kepler.sh in RC2
This works if kepler.sh/bat is in the current directory. Daniel Crawl
10:08 AM Bug #4983 (Resolved): cannot run kepler.sh in RC2
# /Applications/Kepler-2.0-RC2/Kepler.app/Kepler/kepler.sh
Exception in thread "main" java.lang.NoClassDefFoundErro...
Daniel Crawl
10:41 AM Bug #4984: user mailing list is wrong
The intro in the installer says:
User discussion mailing list: kepler-dev@ecoinformatics.org
Daniel Crawl
10:39 AM Bug #4984 (Resolved): user mailing list is wrong
Daniel Crawl
09:43 AM Bug #4982 (Resolved): NPE when starting with no network
NPE when starting with no network:
[run] Exception in thread "main" java.lang.NullPointerException
[r...
Daniel Crawl

05/06/2010

04:33 PM Bug #4981 (In Progress): RIO pdfs don't show up in the Component Library
If you create a workflow and a simple report, execute, export the run to a local repository, then expand the kar in t... Derik Barseghian
04:31 PM Bug #3976: Update Documentation for 2.0 release
Unless anyone has any objections, I am now closing this bug. debi staggs
03:08 PM Bug #4956: make sure matlab works with installed version of kepler 2.0
re-assign to Jianwu jianwu jianwu
02:03 PM Bug #4973: Save Archive sometimes saves more or less than it should in WRP
The issues wrt entire additional sets of run and reporting artifacts should be fixed now.
The issue of Save Archive s...
Derik Barseghian
02:02 PM Bug #4976: Importing run archive from a different namespace is broken
fixed in r24244 (trunk) and r24246 (2.0). Derik Barseghian
12:10 PM Bug #4980: Tagging a run now creates two identical tags in the GUI
Fixed in r24242 on trunk and r24243 on branch. Sean Riddle
05:44 PM Bug #4980 (Resolved): Tagging a run now creates two identical tags in the GUI
Sean is able to replicate this at r24224. If you tag a run in the WRM, two gui tag labels show up instead of one. Derik Barseghian

05/05/2010

12:28 PM Bug #4977: Can't associate multiple sets of reporting artifacts in one kar with different executions
Made that change, so artifacts are being inserted, but leaving this bug open since this procedure won't work for run-... Derik Barseghian
05:00 PM Bug #4977 (Resolved): Can't associate multiple sets of reporting artifacts in one kar with different executions
Reporting artifacts from imported runs are no longer being put into provenance since reporting attributes are no long... Derik Barseghian
12:22 PM Bug #4979: ROML has type of ReportInstance instead of ReportLayout in kar manifest
discussed with Ben, the ReportLayout is a ReportInstance during open, so for reference, we decided the best soln was ... Derik Barseghian
07:11 PM Bug #4979 (Resolved): ROML has type of ReportInstance instead of ReportLayout in kar manifest
E.g.:
Name: Unnamed1_ROML.xml
dependsOnModule: reporting
handler: org.kepler.kar.handlers.ReportLayoutKAREntryHa...
Derik Barseghian
11:05 AM Bug #4966: Make simple GUI mods for module manager
This is done for the 2.0 release. May be revisited after that. debi staggs
05:21 PM Bug #4978 (In Progress): Create additional 'module' property for any menu entries that are inserted by non-core modules
As of revision r24221 and r24222-3 on the branch, there's a way to avoid those errors that look like:
[run] ...
Sean Riddle

05/04/2010

02:13 PM Bug #4976 (Resolved): Importing run archive from a different namespace is broken
When you import a run, the run's execId is set to the next available execId, and we attempt to increment the run's re... Derik Barseghian
01:38 PM Bug #4969: Exported run-kar puts a roml at root of Components tree
fixed in r24213 (trunk) and r24214 (2.0) Derik Barseghian
10:34 AM Bug #4928: Clean up kepler-project.org KAR files
I backed up the kepler database as kepler_backup_05042010 under /var/lib/pgsql/backups. Then the left actors were del... Jing Tao
06:01 PM Bug #4974 (Resolved): ant run and ant force-ptolemy fail to compile an updated file
In the devel tree, if I update a Ptolemy java file, then "ant run"
and "ant force-ptolemy" fail to compile the file....
Christopher Brooks
05:25 PM Bug #4915: PortParameters instantiated from Outline tab cannot be deleted
Hey Christopher, this bug was specific to the (new-ish) Outline tab, not the Components tab. Before it was made non-d... Derik Barseghian
05:06 PM Bug #4970: Make non-instantiable items in local KARs not draggable
Fixed in r24155-6 and r24157 on the branch.
Objects that are cached are given a cache category, which is an enumerat...
Sean Riddle

05/03/2010

04:40 PM Bug #4973 (Resolved): Save Archive sometimes saves more or less than it should in WRP
When running the WRP suite, if you create a workflow and a report design(roml), File => Save Archive should save the ... Derik Barseghian
04:17 PM Bug #4915: PortParameters instantiated from Outline tab cannot be deleted
The executive summary is that I can't reproduce this bug before the change to ParameterPort. Is the change to Parame... Christopher Brooks
01:18 PM Bug #4972 (Resolved): Write documentation for workflow-run-manager module
Debi will try to fwd Sean and I documentation outlines to fill in. Derik Barseghian
01:15 PM Bug #4971 (Resolved): Write documentation for tagging module
n/t Sean Riddle
01:14 PM Bug #4970 (Resolved): Make non-instantiable items in local KARs not draggable
Items in KARs that are not instantiable should not be draggable. The tree model needs to be constructed with these Na... Sean Riddle
01:14 PM Bug #4928: Clean up kepler-project.org KAR files
I tried to open those actors downloaded from the repository on Kepler 1.0. But none of them succeeded. I talked with ... Jing Tao

05/01/2010

05:33 PM Bug #4968: Could not validate generated KAR file for uploading to repository
Close it. If Sean finds an issue on his testing, this bug will be reopened. Jing Tao

04/30/2010

04:56 PM Bug #4969: Exported run-kar puts a roml at root of Components tree
Also the RIO.1.xml and RIO.1.pdf don't show up in the gui inside the KAR. This is a regression.
Also I'm not sure why...
Derik Barseghian
02:12 PM Bug #4969 (Resolved): Exported run-kar puts a roml at root of Components tree
If you create a workflow and a report, run, export the run, you end up with a roml at the root level of your Componen... Derik Barseghian
04:31 PM Bug #4968: Could not validate generated KAR file for uploading to repository
During the generating the children elements of mainAttribute, kepler iterated a Set object to get names and values. H... Jing Tao
02:13 PM Bug #4968: Could not validate generated KAR file for uploading to repository
The xml looks like:
<mainAttributes>
<KAR-Version>2.0</KAR-Version>
<Manifest-Version>1.4.2</Manifest-Version>
<mo...
Jing Tao
02:05 PM Bug #4968 (Resolved): Could not validate generated KAR file for uploading to repository
I created a KAR file by doing the following:
1) Instantiate:
* An SDF director (iterations=1)
* A StringCons...
Sean Riddle
02:47 PM Bug #4967: Disallow dragging romls, workflowRuns, etc onto canvas
Hey Sean, you're right, the run in a remote kar isn't draggable. The bug happens for me for run-kars saved in a local... Derik Barseghian
02:24 PM Bug #4967: Disallow dragging romls, workflowRuns, etc onto canvas
I'm at the trunk of the wrp suite, and I can't reproduce this. I did a search for "run2-mclaughlin" on the keplerdev ... Sean Riddle
01:51 PM Bug #4967 (Resolved): Disallow dragging romls, workflowRuns, etc onto canvas
You can currently try to drag these items out to canvas, resulting in an error. I thought these were _notDraggable at... Derik Barseghian
01:46 PM Bug #4957: Tags are not visible under Java 1.6
Fixed in r24151 and in r24152 in the branch. Sean Riddle
09:25 AM Bug #4928: Clean up kepler-project.org KAR files
Their names are listed for these KAR files because they were in the documentation of the uploaded kar. It may be tha... Matt Jones
09:13 AM Bug #4928: Clean up kepler-project.org KAR files
The files that have "jie liu", "edward a lee" and "Yuhong Xiong" are likely
duplicated file from the ptII repository....
Christopher Brooks
06:16 PM Bug #4928: Clean up kepler-project.org KAR files
wrote a program to delete the kar files except the following ones. I am waiting people's response.
Authentication zh...
Jing Tao
08:47 AM Bug #4910: Test module installation system
Is the module installation system tested when I run "ant test" and as part
of the nightly build?
Christopher Brooks
08:16 AM Bug #4910: Test module installation system
Module system testing confirms that it is working well, and in the process of testing we also decided to make a few s... debi staggs
08:35 AM Bug #4966: Make simple GUI mods for module manager
These changes have been made, and I am closing this bug for now. debi staggs
08:34 AM Bug #4966 (Resolved): Make simple GUI mods for module manager
Make the following modifications to the GUI of the module manager as discussed with Matt, David, and Chad.
1.) Hid...
debi staggs
09:21 PM Bug #4915: PortParameters instantiated from Outline tab cannot be deleted
Added the "_notDraggable" parameter to the ParameterPort class constructor so PTree will not allow you to drag it to ... Aaron Aaron
06:23 PM Bug #4965: Create and use configuration parameter for writing run-kars
fixed in r24099 and r24100 Derik Barseghian
05:33 PM Bug #4965 (Resolved): Create and use configuration parameter for writing run-kars
Let user enable the writing of resultant run-kar files into KeplerData/workflow-runs/ by changing a configuration par... Derik Barseghian
05:29 PM Bug #4964: Provenance turns off for unsupported director, but doesn't send toggle event
fixed now, thanks dan. Derik Barseghian

04/29/2010

04:50 PM Bug #4910: Test module installation system
Module Manager is now working with http. Tested the switching between suites and it seems to be working well. Need ... Chad Berkley
04:30 PM Bug #4956: make sure matlab works with installed version of kepler 2.0
I made a wiki page (https://kepler-project.org/developers/teams/build/matlab-lib-build-instructions-in-kepler-for-mat... jianwu jianwu
02:35 PM Bug #4956: make sure matlab works with installed version of kepler 2.0
Dan and I updated the ptmatlab.cc in ptolemy module, created the libs for Mac (32 and 64 bit), Windows (32 and 64 bit... jianwu jianwu
12:23 PM Bug #4964 (Resolved): Provenance turns off for unsupported director, but doesn't send toggle event
If you open a model with an unsupported director in wrp, like 03-LotkaVolterra, provenance auto disables because the ... Derik Barseghian
05:25 PM Bug #4928: Clean up kepler-project.org KAR files
I saw several actors are in modules that are not in Kepler 2.0 release, such as Griddles* ones are in https://code.ke... jianwu jianwu
05:03 PM Bug #4928: Clean up kepler-project.org KAR files
Most of these seem like variants on existing actors. You should check if they were simply uploaded for testing purpo... Matt Jones

04/28/2010

04:37 PM Bug #4928: Clean up kepler-project.org KAR files
After compared, those actors are not found on the kepler local library:
Authentication
kar.454.1
actor.454.1
BlastO...
Jing Tao
03:40 PM Bug #4960: NPE from TableSorter when repeatedly executing a small workflow in WRP
should be fixed in r24037 (trunk) and r24038 (2.0).
I haven't seen the error since, but leaving open for Dan to test ...
Derik Barseghian
01:26 PM Bug #4943: RC5 Installer Tracking Bug
changing title to rc2 Chad Berkley
01:25 PM Bug #4681: Check all file properties before release
updated file props for trunk and 2.0. if this is done in the future, do not update keywords for any jar files. this... Chad Berkley

04/27/2010

03:34 PM Bug #4928: Clean up kepler-project.org KAR files
Thanks Jing. Yeah, just go ahead and delete any actor that is in the local repository and the remote repository unle... Chad Berkley
03:23 PM Bug #4928: Clean up kepler-project.org KAR files
I went to the kepler repository and did a "Browse all components" action. The website showed 373 components (on 37 pa... Jing Tao
03:12 PM Bug #4075: Rework Section 6
Accepted changes, re-edited. looks good. Chad Berkley
03:07 PM Bug #4956: make sure matlab works with installed version of kepler 2.0
Yeah, I'll wait for your changes. Let me know as soon as you get it working. Chad Berkley
03:00 PM Bug #4956: make sure matlab works with installed version of kepler 2.0
Daniel and I are updating ptmatlab.cc to make it work with Mac 64 bit. It will be done in one or two days. We will te... jianwu jianwu
03:03 PM Bug #4936: Preferences for searching remote repositories are not maintained across runs
Value is now written to the configuration. Chad Berkley
02:00 PM Bug #4958: Tags colors are all white by default under Windows XP with Java 1.5
Fixed in r23994-95. Sean Riddle
12:16 PM Bug #4960 (Resolved): NPE from TableSorter when repeatedly executing a small workflow in WRP
If you're in the WRP suite and repeatedly execute a workflow, this NPE sometimes occurs with each execution. WRM does... Derik Barseghian
05:26 PM Bug #4944: Unsaved report warning happens once per window
fixed in r23982. Derik Barseghian
05:08 PM Bug #4959: Reporting call to getDefaultProvenaceRecorder occasionally gets an NPE
fixed in r23981. Derik Barseghian

04/26/2010

03:37 PM Bug #4893: WRP Kepler Frame vertically fills entire screen
With 13 items I don't have any problems. Derik Barseghian
11:08 AM Bug #4893: WRP Kepler Frame vertically fills entire screen
The designersplitpane shouldn't affect anything hopefully, but it is important not to make the size of the layoutpane... debi staggs
02:21 PM Bug #4955: Error trying to instantiate workflow from Outline tab
I've hidden the root node in the outline tree to prevent the possibility of this error from occurring. Aaron Aaron
01:46 PM Bug #4517: Verify that the search capabilities work
close the bug. Jing Tao
01:45 PM Bug #4953: Remote Components category sticks around sometimes
Fixed. Sean Riddle
12:43 PM Bug #4959: Reporting call to getDefaultProvenaceRecorder occasionally gets an NPE
Re: new lsid added and referral generated when it shouldn't, I think I was wrong, this is happening when a new namesp... Derik Barseghian
12:16 PM Bug #4959: Reporting call to getDefaultProvenaceRecorder occasionally gets an NPE
Now I think this happens when you make a change to certain workflows and an entirely new lsid is gotten, and the old ... Derik Barseghian
11:47 AM Bug #4959 (Resolved): Reporting call to getDefaultProvenaceRecorder occasionally gets an NPE
Sometimes when you execute a workflow in WRP, you'll get an NPE from Reporting when it calls ProvenaceRecorder.getDef... Derik Barseghian

04/23/2010

03:22 PM Bug #4958: Tags colors are all white by default under Windows XP with Java 1.5
It is a wild shot, but perhaps all white tags could have a similar cause as the cause of bug #3810? Christopher Brooks
03:18 PM Bug #4958 (Resolved): Tags colors are all white by default under Windows XP with Java 1.5
On Windows XP w/ Java 1.5, all the tags are white by default. I see that if I go into the tag manager, I can change c... Derik Barseghian
03:13 PM Bug #4957 (Resolved): Tags are not visible under Java 1.6
Tags are clearly laid out, as other components are moved by them, but they are not themselves visible on Java 1.6, at... Sean Riddle
02:42 PM Bug #4524: no prompt to save a changed report
i don't think that's a "fix" for this issue.
If I've been making report layout changes and then i close Kepler, I am ...
ben leinfelder
02:32 PM Bug #3801: open dialog, common places pane has white box instead of text
merged the 8 files in comment#12 into 2.0, so moving this bug back to 2.X.Y target.
The first part of comment#12 re: ...
Derik Barseghian
01:22 PM Bug #3801: open dialog, common places pane has white box instead of text
It looks like the files in comment#12 still need to be merged into 2.0. I'll do this later this afternoon. Derik Barseghian
09:43 AM Bug #4956 (Resolved): make sure matlab works with installed version of kepler 2.0
need to get matlab demo workflows working. Chad Berkley
06:55 AM Bug #4082: New user guide section on modules/module manager
Added screen shots to chapter 12. David Welker

04/22/2010

04:12 PM Bug #4893: WRP Kepler Frame vertically fills entire screen
fixed in r23874. Derik Barseghian
02:48 PM Bug #4893: WRP Kepler Frame vertically fills entire screen
It looks like simply changing ReportDesignerPanel's:
designersplitpane.setMinimumSize(new Dimension(800, 900));
d...
Derik Barseghian
01:34 PM Bug #4893: WRP Kepler Frame vertically fills entire screen
doesn't the Report Designed have a HUGE canvas in a scrollpane. is it possible that is affecting vertical window sizing? ben leinfelder
01:25 PM Bug #4893: WRP Kepler Frame vertically fills entire screen
I've got a proper XP box up now, and I've verified this bug happens under WRP on XP. My screen resolution is 1280 x 1... Derik Barseghian
02:18 PM Bug #4953: Remote Components category sticks around sometimes
This is still happening for me in wrp (on my mac launched from eclipse). Same procedure, configure to search kepler-d... Derik Barseghian
02:01 PM Bug #4953: Remote Components category sticks around sometimes
Not sure why this stopped happening, but I don't see it anymore. If anybody gets this, please re-open. Sean Riddle
05:34 PM Bug #4955 (Resolved): Error trying to instantiate workflow from Outline tab
If you try to drag the root node in the Outline tab out to canvas, you get an exception:
com.microstar.xml.XmlExce...
Derik Barseghian

04/21/2010

03:16 PM Bug #4765: semantic annotation doesn't appear until you click on workflow
Fixed in r23852 Sean Riddle
01:45 PM Bug #4952: Error recording workflow structure on workflow after deleting run
Fixed in r23833. Daniel Crawl
11:41 AM Bug #4954: Duration value on imported runs is incorrect
fixed in r23829. Derik Barseghian
06:06 PM Bug #4954 (Resolved): Duration value on imported runs is incorrect
If you export a run, then import it, the end_time for the run inserted into provenance is wrong, and hence so is the ... Derik Barseghian
05:51 PM Bug #4953 (In Progress): Remote Components category sticks around sometimes
If I search KeplerDevRepository for "run2", I currently get back one result: run2-mclaughlin_par,kar, inside the new ... Derik Barseghian

04/20/2010

04:58 PM Bug #4942: KarXmlGenerator generated a invalid kar xml if KarEntry has dependsOnModule element
After changing the schema base on comment 9, the invalid error has gone. Jing Tao
02:03 PM Bug #4942: KarXmlGenerator generated a invalid kar xml if KarEntry has dependsOnModule element
Here is an email from Aaron:
Hi Jing, I was thinking about this a bit and I think option 1 is the way to go. The KA...
Jing Tao
12:07 PM Bug #4942: KarXmlGenerator generated a invalid kar xml if KarEntry has dependsOnModule element
Sean: yes it will support new attributes too:
Ben, Aaron and I discussed the possibility to add some arbitrary eleme...
Jing Tao
12:01 PM Bug #4942: KarXmlGenerator generated a invalid kar xml if KarEntry has dependsOnModule element
Will this support the addition of more attributes in the future? Sean Riddle
11:56 AM Bug #4942: KarXmlGenerator generated a invalid kar xml if KarEntry has dependsOnModule element
We will use a ordered key list (elements name) to get the value from the map. Then build the xml base on the element ... Jing Tao
04:25 PM Bug #4941: Data search causes menus to disappear on the mac
Ok, I got this fixed. The key was to get the graphTableau from the ModelDirectory, from which you can then get the F... Chad Berkley
01:59 PM Bug #4941: Data search causes menus to disappear on the mac
This is indeed a problem with the JDialog not having a parent. I am working on a solution to get the parent from the... Chad Berkley
05:40 PM Bug #4357: Workflow Run Manager does not mark last failed execution red
Can't get this to occur anymore, closing. Derik Barseghian
05:38 PM Bug #4231: Workflow Run Manager - failed runs should be highlighted red
Can't get this occur since bug#4230 fixed. Please reopen if you find a way to get a run to fail and the WRM doesn't h... Derik Barseghian
05:28 PM Bug #4952 (Resolved): Error recording workflow structure on workflow after deleting run
If create a workflow, run it, delete the run, then try to run the workflow again, you'll currently get an error (belo... Derik Barseghian

04/19/2010

04:42 PM Bug #4671: cannot export workflow runs when workflow has actors with <> in the names
This is fixed at r23778. I've restricted the gui to not allow < in the name of a kar, or in the workflow rename dialo... Derik Barseghian
01:31 PM Bug #4524: no prompt to save a changed report
We solved this by adding the 'lock report' feature. debi staggs
01:16 PM Bug #4161: Develop kepler workflow execution engine
closing the bug. Jing Tao
01:15 PM Bug #4161: Develop kepler workflow execution engine
so far the engine works. I am closing the bug. Jing Tao
12:33 PM Bug #4944 (Resolved): Unsaved report warning happens once per window
The new warning dialog 'this layout is not locked or saved' happens once per window, including windows that have been... Derik Barseghian
11:44 AM Bug #4942: KarXmlGenerator generated a invalid kar xml if KarEntry has dependsOnModule element
I dug code a little bit and found here is the code to generate the elements of karEntryAttribute:
Attributes atts = ...
Jing Tao
11:39 AM Bug #4943 (Resolved): RC5 Installer Tracking Bug
Please have all RC1 installer bugs block this bug. Chad Berkley
11:31 AM Bug #4938: Reporting suite no longer works on its own
Ah right, ReportingListener is in wrp because it uses ExportRunsToKar, which needs to be in either wrp or workflow-ru... Derik Barseghian

04/17/2010

06:55 PM Bug #4938: Reporting suite no longer works on its own
I started looking into this. It looks like reporting's Initialize class should have an updateFrameComponents that's t... Derik Barseghian

04/16/2010

04:55 PM Bug #4942: KarXmlGenerator generated a invalid kar xml if KarEntry has dependsOnModule element
hrrm, this is a good point that wrp will add more elements there. I think the wrp will release soon. I don't want to ... Jing Tao
04:39 PM Bug #4942: KarXmlGenerator generated a invalid kar xml if KarEntry has dependsOnModule element
Also - for WRP we are going to be adding more children to <karEntryAttributes> - ideally we'd like to add any element... ben leinfelder
04:34 PM Bug #4942: KarXmlGenerator generated a invalid kar xml if KarEntry has dependsOnModule element
whichever is less of a headache to change. we are in charge of both of them, so you might as well make it easy for yo... ben leinfelder
12:36 PM Bug #4942: KarXmlGenerator generated a invalid kar xml if KarEntry has dependsOnModule element
I dug around and found the xml instance is:
<karEntryAttributes>
<Name>
tpc09-plant-dynamics-woody_ROML.xml
</Na...
Jing Tao
12:25 PM Bug #4942 (Resolved): KarXmlGenerator generated a invalid kar xml if KarEntry has dependsOnModule element
When i tried to upload the tpc09-plant-dynamics-woody.kar to a remote server, kepler gets the error:
org.xml.sax.SA...
Jing Tao
04:11 PM Bug #4910: Test module installation system
Accidentally closed this bug, please disregard the last comment as it was intended for a bug # 4923. debi staggs
04:04 PM Bug #4910: Test module installation system
I have implemented this solution now. A user can 'lock' the report layout if they haven't run or saved yet, so that ... debi staggs
04:07 PM Bug #4923: 'Lock' the report layout so that if you switch to another run in the run manager, it doesn't lose the layout that is currently being edited.
The lock report feature is now in and working. Also added a warning if they click on a row in the workflow run manag... debi staggs
04:03 PM Bug #4671: cannot export workflow runs when workflow has actors with <> in the names
Christopher checked in part of the fix in r57600 and r57601, and updated kepler to trunk and 2.0 branch to use these ... Derik Barseghian
03:51 PM Bug #4868: Update R paths in documentation and demos
nope, I don't think they should be moved at this point. Lets just leave it. Chad Berkley
03:47 PM Bug #4940: User is never notified of incorrect login
This appears to be a bug in ecogrid, not Kepler. Closing this in kepler, but it should be looked at in ecogrid. Chad Berkley
02:12 PM Bug #4940: User is never notified of incorrect login
This actually does not fail. It just takes a ridiculous amount of time to return the <unauth_login> message from the... Chad Berkley
11:32 AM Bug #4940 (Resolved): User is never notified of incorrect login
When you do a data search and login, if you put an incorrect username or password, then do a search, Kepler never tel... Chad Berkley
02:15 PM Bug #4075: Rework Section 6
Chad you may want to peak at the comments, but I'm done on this one. Aaron Aaron
02:08 PM Bug #4080: Rework Section 11
OK this section looks pretty good now. closing Aaron Aaron
02:06 PM Bug #4941: Data search causes menus to disappear on the mac
Hey Chad,
This sounds like bug#4247. Is null being passed in as first param to a showConfirmDialog or a showMessageDi...
Derik Barseghian
02:02 PM Bug #4941: Data search causes menus to disappear on the mac
This seems to only happen when the authentication dialog appears. If the auth dialog does not appear, the menus are ... Chad Berkley
12:09 PM Bug #4941 (Resolved): Data search causes menus to disappear on the mac
If you do a data search on the mac, all of the menus in the menu bar disappear and never return. To recreate, click ... Chad Berkley
11:35 AM Bug #4798: Create parser for KAR XML specification
Sean and Jing have verified that this is now working. Chad Berkley
05:33 PM Bug #4798: Create parser for KAR XML specification
Just enabled the schema validation on both the component search result and the generated kar xml by kepler.
In oder ...
Jing Tao
11:35 AM Bug #2493: actor repository tracking bug
All dependencies are done. closing. Chad Berkley
11:34 AM Bug #4462: Component search in remote repositories not working
Sean says this is completed. Closing. Reopen if problems are found. Chad Berkley
09:59 AM Bug #4874: Modify existing KARFile schema for use with KAR File Parser
I believe this is done in that it largely duplicates this bug:
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4798
ben leinfelder

04/15/2010

02:51 PM Bug #4672: Workflow title isn't refreshed during run export workflow rename
Closing this. You can get into some confusing territory with name tracking if you follow the scenario in comment#1, e... Derik Barseghian
02:44 PM Bug #4230: problem associating errors with particular execution
Fixed. Daniel Crawl
02:27 PM Bug #4931: 'Refresh (using current layout)' button gives error when Provenance is off
fixed in r23722. refresh button now disables/enables with provenance enable/disable. Derik Barseghian
01:36 PM Bug #4938: Reporting suite no longer works on its own
I have been working out of only wrp for quite some time now. I don't think that reporting is meant to run on it's ow... debi staggs
01:19 PM Bug #4938 (Resolved): Reporting suite no longer works on its own
If you ant change-to -Dsuite=reporting, the View drop-down doesn't show up, so you can't use Reporting. This used to ... Derik Barseghian
01:11 PM Bug #4924: Tagging a run when provenance is off gives errors
fixed in r23719. context now switches to workflow when provenance is disabled. Derik Barseghian
11:41 AM Bug #4073: Rework Section 4
Finished as of r1235. Sean Riddle
11:27 AM Bug #4899: Installer Bugs
All of these bugs have been fixed. Will open new bugs for any new problems. Chad Berkley
11:22 AM Bug #4932: Demo workflows from modules are not being copied into KeplerData
Should be fixed in r23704. Sean Riddle
06:11 PM Bug #4671: cannot export workflow runs when workflow has actors with <> in the names
I've written part of a patch for this issue and am discussing it with Christopher. Derik Barseghian
05:38 PM Bug #4927: Don't allow export, upload, delete of executing run in WRM
fixed in r23700 Derik Barseghian
05:25 PM Bug #4915: PortParameters instantiated from Outline tab cannot be deleted
Well, having trouble figuring this one out. I went through and tested all the other parameters included in the CoreA... Aaron Aaron

04/14/2010

04:02 PM Bug #4912: File => New Workflow => FSM Model and Modal Model don't work
Fixed in r23688 Sean Riddle
11:46 AM Bug #4899: Installer Bugs
9 is now fixed. only 20 remains. Chad Berkley
05:47 PM Bug #4790: cmd-click in wrp does not create relation
Fixed in r23657. Daniel Crawl

04/13/2010

04:22 PM Bug #4912: File => New Workflow => FSM Model and Modal Model don't work
This occurs when using the wrp suite since the tagging module overrides BasicGraphController and gets a class cast ex... Daniel Crawl
04:18 PM Bug #4893: WRP Kepler Frame vertically fills entire screen
Hey Derik - since you think this may be related to the WRM sizing, would you mind taking a look at it ? debi staggs
04:12 PM Bug #4648: Create classes to find and display any available documentation for installed modules or suites.
This bug is now complete. When a developer publishes a suite, they just have to place a file that is named with the ... debi staggs
04:07 PM Bug #3976: Update Documentation for 2.0 release
There are still some screen shots needed for the module manager chapter. Perhaps a good time to do those screen shots... David Welker
03:53 PM Bug #3976: Update Documentation for 2.0 release
Does everyone think we can close this bug now ? debi staggs
12:32 PM Bug #4937: Workflow tags showing as deletable in Tagging when clicking on Run
Fixed in r23653 (r23654 in branch). Sean Riddle
05:56 PM Bug #4767: error instantiating actor with port types from KAR
A small patch to the Ptolemy class TypeAttribute has solved this particular bug, but there is still a deeper problem ... Aaron Aaron

04/12/2010

02:18 PM Bug #4899: Installer Bugs
20) add all directories to .app for mac installer Chad Berkley
01:16 PM Bug #4925: Components search occasionally shows different results
I was unable to reproduce this bug. If you only search for "sd" then you get bothe the SDF Director and the Wmsd Act... Aaron Aaron
01:07 PM Bug #4075: Rework Section 6
I've finished going through this section, there are a few comments still that may need to be worked out. Aaron Aaron
01:02 PM Bug #4924: Tagging a run when provenance is off gives errors
Tagging should probably implement ProvenanceEnabledListener to disable the ability to tag a run when provenance has b... Derik Barseghian
12:52 PM Bug #4937 (Resolved): Workflow tags showing as deletable in Tagging when clicking on Run
If you click on a row in the WRM, the tags for the workflow and the run are shown in the Tagging UI. The workflow tag... Derik Barseghian
11:20 AM Bug #4929: cannot add composite actor to canvas
I believe this was fixed when bug#4916 was fixed, with r23572 (2.0) and 23571 (trunk). It's working for me on trunk a... Derik Barseghian

04/09/2010

04:16 PM Bug #4936 (Resolved): Preferences for searching remote repositories are not maintained across runs
In the component search "Sources" window, there are two checkboxes associated with each repository, "Save" and "Searc... Sean Riddle
 

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