Activity
From 03/27/2008 to 04/25/2008
04/25/2008
- 01:40 PM Bug #2318: Copyrights and licenses of subpackages need to be handled
- Here's a list of the files I removed. the ones with a "--" are had a secondary compile time dependency on the jar (i...
- 12:12 PM Bug #2318: Copyrights and licenses of subpackages need to be handled
- Here are other file that will have to be removed if these jars are deleted. This list does not include the actors th...
- 11:02 AM Bug #3198: test dynamic library installations on all platforms
- this now works on all platforms. will retest with real installers before the release.
- 09:59 AM Bug #3195: Check all documentation for 1.0 release
- I've incorporated Chad's User Manual and GSG feedback and created new PDF files of the docs for the 1.0.0 release. Al...
04/24/2008
- 11:50 PM Bug #3233: finalize ptolemy matlab actor for 1.0 release
- I'm closing the Matlab bug because I opened bug# 3242
"dlls should not go in c:/Windows/System32" - 03:04 PM Bug #3233: finalize ptolemy matlab actor for 1.0 release
- cplibs.bat/sh is run by the installer. If it doesn't run, the libraries for the gdal stuff don't work. I'm open to ...
- 02:50 PM Bug #3233: finalize ptolemy matlab actor for 1.0 release
- Sorry, I forgot to add -kb. I added it to the linux and mac versions.
The current ptmatlab.dll works for me, both in... - 12:43 PM Bug #3233: finalize ptolemy matlab actor for 1.0 release
- I fixed the cvs -kb problem of ptmatlab.dll in the devel head and release branch.
- 12:23 PM Bug #3233: finalize ptolemy matlab actor for 1.0 release
- This is the cygcheck -s output from my machine.
- 12:22 PM Bug #3233: finalize ptolemy matlab actor for 1.0 release
- I'm not sure what's up with c:/Windows/System32/ptmatlab.dll.
The file I have is
$ ls -l c:/Windows/System32/ptmatlab... - 12:11 PM Bug #3233: finalize ptolemy matlab actor for 1.0 release
- I updated the repository so that ptmatlab.dll is executable. I'm moving Christopher's other suggestions for permissi...
- 11:48 PM Bug #3242 (Resolved): dlls should not go in c:/Windows/System32
- In bug# 3233, I noticed that dlls were showing up in c:/Windows/System32.
Chad wrote:
> cplibs.bat/sh is run by the... - 06:30 PM Bug #2318: Copyrights and licenses of subpackages need to be handled
- We can delete the following jar files:
doublePolygon.jar
NimrodService.jar
griddlesActorLib.jar
ncsu.jar
edu.sdsc.gl... - 03:01 PM Bug #3216: Demo workflows do not run
- I've sent the list of non-working demos to everyone. It's best to discard them as they are not critical except for a ...
- 12:40 PM Bug #3234: IJMacro does not work in several demo workflows
- Works for me now on a clean checkout. Not sure what was up.
- 11:55 AM Bug #3234: IJMacro does not work in several demo workflows
- Sean, can you please clarify whether this is still a bug. If it isn't, please close it. If you are having related i...
- 12:12 PM Bug #3240 (Resolved): Fix permissions on kepler CVS files.
- Christopher suggests we redo all of the permissions for kepler:
I suggest fixing the permissions for the java and ... - 11:50 AM Bug #3237: Search actor in remote repository doesn't work
- Following the above plan, we fixed the issue. Ben, chand and i tested it and it worked. Now kepler can search the rem...
- 11:45 AM Bug #3195: Check all documentation for 1.0 release
- finished reviewing the GSG. I checked my changes into CVS with track changes on.
- 09:25 AM Bug #3238 (Resolved): Refactor NMI build
- The NMI build needs to be refactored in several ways after the release. Here's the list of things I think needs to b...
04/23/2008
- 05:37 PM Bug #3196: Find/Change license on gpl/lgpl code
- The header files in the following folders under src/cpp need to have license text inserted into them:
backprop
garp
... - 09:54 AM Bug #3196: Find/Change license on gpl/lgpl code
- The following source files still have GPL licenses:
- cpp/gis/grass/GISHull/hull.cpp
- org/geon/GridOverlay.java
- o... - 04:00 PM Bug #3233: finalize ptolemy matlab actor for 1.0 release
- FYI, I had no problems with ptmatlab.dll on cygwin.
Was your c:\windows\system32\ptmatlab.dll was the same version f... - 03:37 PM Bug #3233: finalize ptolemy matlab actor for 1.0 release
- I replaced the kepler/lib/ptmatlab.dll with the $PTII/lib/ptmatlab.dll_msvc
because the previous ptmatlab.dll gave me... - 03:47 PM Bug #2990: file|open dialog should open in workflows directory
- I'm reopening this bug because if the user uses the kepler.sh script
then having File->Open open kepler/demos is odd.... - 12:52 PM Bug #3097: incorrect classpath in generated ptexecute.sh and momlexecute.sh
- I updated kepler.exe for windows and removed kepler.bat.
The remaining tasks are enhancements for a later release. - 12:24 PM Bug #3207: consolidate command line execution actors
- Ok, I folded these changes into ptII rel-7-0-beta-2.
I spent some time working with the file redirection operators by... - 12:23 PM Bug #3207: consolidate command line execution actors
- This model writes a random number to a file using the Exec actor, but
the file is not created before the attempt to r... - 11:02 AM Bug #3108: ENM GARP Baseline 3-Actor GARP - Browser Display demo fails with NameDuplication: convertTo?
- A workflow in the workflows/ folder doesn't affect Kepler 1.0, since we're not releasing it, just demos/
- 10:02 AM Bug #3182: check for consistent licensing text in all source files
- Most of the remaining issues are listed under bug #2318 now (as well as bug #3196).
*** This bug has been marked as ... - 10:02 AM Bug #2318: Copyrights and licenses of subpackages need to be handled
- *** Bug 3182 has been marked as a duplicate of this bug. ***
- 08:24 AM Bug #3237: Search actor in remote repository doesn't work
- Targeting this at 1.0.0 to fix a critical problem.
04/22/2008
- 10:06 PM Bug #3237 (Resolved): Search actor in remote repository doesn't work
- The reason of the search not work is that kepler sets "entity" as
namespace when it searches actors. In query.xsd an... - 05:46 PM Bug #3026: Actor documentation does not appear in older workflows
- All updated workflows have been committed.
- 05:30 PM Bug #3115: Need to check Kepler for memory leaks
- I did not detect significant memory leaks. From a cost-benefit perspective, there is little advantage to push to find...
- 05:10 PM Bug #3207: consolidate command line execution actors
- Ok, I'll update ptII rel-7-0-beta-2 tomorrow (Wed).
I'm taking this bug pending the update. - 02:14 PM Bug #3207: consolidate command line execution actors
- By prepending sh or cmd, the command can use file redirection operators.
I tested this actor on several platforms, a... - 05:07 PM Bug #3233: finalize ptolemy matlab actor for 1.0 release
- I'm just back from running a workshop yesterday.
I can patch these on Wed, 4/23, so I'm taking this bug. I'll reassi... - 04:50 PM Bug #3195: Check all documentation for 1.0 release
page 280: The page ends with "can be found here:" but the path after the colon
is not a link.
page 303: include a U...
04/21/2008
- 04:34 PM Bug #3195: Check all documentation for 1.0 release
page 170: heading of table is widowed
page 181: kepler earthgrid
page 181: table header widowed
page 183: in the ...- 11:45 AM Bug #3195: Check all documentation for 1.0 release
- need to update http://www.kepler-project.org/Wiki.jsp?page=Documentation
- 02:05 PM Bug #3097: incorrect classpath in generated ptexecute.sh and momlexecute.sh
- I moved the wfexecute functionality into kepler.sh and kepler.bat.
Remaining tasks:
1. kepler.bat functionality sho... - 01:01 PM Bug #2318: Copyrights and licenses of subpackages need to be handled
- Okay, it looks like I was looking at compile-time dependencies instead of the full list. That negates the problems wi...
- 11:49 AM Bug #2318: Copyrights and licenses of subpackages need to be handled
- We need to include extra JARs per these license restrictions: http://java.sun.com/webservices/docs/1.5/ReleaseNotes.h...
- 11:38 AM Bug #3234: IJMacro does not work in several demo workflows
- Seems to be a problem with my checkout. IJMacro works fine now. I am still getting hangs whenever I need to use a Dar...
- 10:09 AM Bug #3236 (Resolved): remove strict requirements for PTII and KEPLER env variables
- From an email from matt on kepler-dev:
I agree, it would be better if we could build without requiring that
JAVA...
04/20/2008
- 03:52 PM Bug #3233: finalize ptolemy matlab actor for 1.0 release
- Once the patches in comments #1 and #2 have been applied, this bug can be closed.
- 03:47 PM Bug #3233: finalize ptolemy matlab actor for 1.0 release
- UtilityFunctions.loadLibrary() fails to find the jni library on Linux. Please apply the attached patch.
- 03:43 PM Bug #3233: finalize ptolemy matlab actor for 1.0 release
- I updated the KAR file to use TextStyle for the expression parameter, but the KAR parser ignores it. (If I add the sa...
04/18/2008
- 04:10 PM Bug #3207: consolidate command line execution actors
- I did the merge.
I added a parameter called "prependPlatformDependentShellCommand",
which, if set to true, will prepe... - 08:58 AM Bug #3207: consolidate command line execution actors
- I'm part way through the merge, and had two questions.
1) The new version of the actor always uses adds prepends cmd... - 03:59 PM Bug #3195: Check all documentation for 1.0 release
page 115: figure 5.17 looks kinda bad. the pull out box needs to be redone.
page 122: reference to the "kepler ear...- 07:52 AM Bug #3195: Check all documentation for 1.0 release
- Chad wrote:
> page 13: Kepler 1.0 is based on the Jan 31 ...
> It's based on Ptolemy 7 beta 2
Kepler 1.0 is based o... - 12:07 PM Bug #3234: IJMacro does not work in several demo workflows
- Using a new check out of the 1.0 RELEASE version of Kepler, I see no problems with the IJMacro actor on a MacbookPro,...
- 09:01 AM Bug #3234: IJMacro does not work in several demo workflows
- Is this in the head of CVS or the 1.0 release branch?
I cannot check on a Mac at the moment, but the message looks l... - 12:38 AM Bug #3234 (Resolved): IJMacro does not work in several demo workflows
- Running on an installed version of Kepler on OS X.5, in several ENM workflows that try to use IJMacro to display an i...
- 10:35 AM Bug #3235 (New): Add an Edit, Select All menu item and respective accelerator
- Many (most?) programs have a Select All feature. This would allow, for example, a Kepler Mac user to "apple A" and th...
04/17/2008
- 08:35 PM Bug #2318: Copyrights and licenses of subpackages need to be handled
- Good News. I have finished examining all of the remaining runtime jars, and I have found only one major problem.
The... - 05:28 PM Bug #3209: ecogrid SearchRegistryAction error when disconnected from network
- Remove the error message panel and decrease debug level from error to warn in src/org/ecoinformatics/seek/ecogrid/Sea...
- 05:01 PM Bug #3195: Check all documentation for 1.0 release
- page 13: Kepler 1.0 is based on the Jan 31 ...
It's based on Ptolemy 7 beta 2
page 13: cheminformatics
is that the ... - 04:44 PM Bug #3233 (Resolved): finalize ptolemy matlab actor for 1.0 release
- For 1.0 release, we decided to use the Ptolemy matlab actor. The following needs to be done:
- use TextArea for ex... - 01:13 PM Bug #3207: consolidate command line execution actors
- I'll take this bug and fold the Exec actor changes into the ptII release
branch. - 12:57 PM Bug #3207: consolidate command line execution actors
- I committed my remaining updates to Exec.java. Once it has been folded into ptII CVS, this bug can be closed.
- 10:57 AM Bug #3225: If R is not present, then error message just says "null"
- Added a better error message. Also pointed the user to section 8.2.2 of the user manual that explains how to install...
- 09:38 AM Bug #3208: consolidate matlab actors
- retarget to 1.1
- 09:32 AM Bug #3230: Matrix Viewer actor does not accept RExpression matrices
- The RExpression matrix was created solely to pass a matrix to another RExpression actor. It is NOT a Kepler/Ptolemy m...
- 09:25 AM Bug #3226: Eval: subplots from RExpression overly condensed
- Differences in graphs created by R depend on the graphics device (i.e. png file, pdf file, or R plotting window and t...
04/16/2008
- 04:48 PM Bug #3231 (New): 3-way table output (multiway cross tabulation actor?)
- 3-way tables are a useful extension of 2-way tables, which are a basic tool for exploring relationships in data. R h...
- 04:40 PM Bug #3230 (New): Matrix Viewer actor does not accept RExpression matrices
- 2-way tables are a common way to view relationships between bivariate data. The The RExpression actor is quite good ...
- 04:23 PM Bug #3209: ecogrid SearchRegistryAction error when disconnected from network
- The short term solution is just removing the error message. Kepler will keep silent if it couldn't connect to the reg...
- 03:40 PM Bug #3209: ecogrid SearchRegistryAction error when disconnected from network
- retarget to 1.1
- 04:21 PM Bug #3228 (New): Kepler need a central place to handle network disconnection
- When we start kepler, if there is no network disconnection, kepler should have a decent way to handle it - for exampl...
- 04:08 PM Bug #2318: Copyrights and licenses of subpackages need to be handled
- odc-kepler-0.1.r18530.jar has been removed from 1.0 branch.
- 03:59 PM Bug #3206: ecogrid error message occurs when running disconnected from network
- It was fixed base above solution.
- 03:42 PM Bug #3226 (New): Eval: subplots from RExpression overly condensed
- Using nightly build 14 Apr 08 under WinXP. The code below generates a publication-quality graphic when run from the ...
- 03:30 PM Bug #3115: Need to check Kepler for memory leaks
- My notes are at:
http://ptolemy.eecs.berkeley.edu/ptolemyII/ptIIlatest/ptII/doc/coding/performance.htm - 03:24 PM Bug #3225 (Resolved): If R is not present, then error message just says "null"
- If I build Kepler using RELEASE-BRANCH-1-0-0 and ptII using rel-7-0-beta-2
from source using:
ant full-clean rebuil... - 01:01 PM Bug #3196: Find/Change license on gpl/lgpl code
- The four Opendap actor files now have a BSD license.
04/15/2008
- 08:01 PM Bug #3097: incorrect classpath in generated ptexecute.sh and momlexecute.sh
- I tried wfexecute, it looks pretty slick, below are some comments.
- The name is a little funny. wtf comes to mind, ... - 07:16 PM Bug #3122: Get installer size down
- For comparison,
Ptolemy II 7.0.1 Windows Installer: 131Mb
Ptolemy II 7.0.1 Windows zip: 44.7Mb
Ptolemy II 7.0.1 Unix... - 07:03 PM Bug #3207: consolidate command line execution actors
- I can fold this in to the ptII devel tree asap, but should this ship in 1.0.0
or wait? - 04:13 PM Bug #3207: consolidate command line execution actors
- I updated the External Execution actor based on the design in comment #2.
If there are no complaints, I will remove ... - 07:02 PM Bug #3208: consolidate matlab actors
- Perhaps consolidating the Matlab actors should be post 1.0.0?
- 06:59 PM Bug #2531: The link from Kepler intro page to the Ptolemy quick links page is broken
- I checked this in Kepler-1.0.0 and the Ptolemy demos all open.
I'm closing this bug. - 06:29 PM Bug #3179: Distinguish "download" and "information" attribute values in eml distributlon online url
- Tested it against server and it worked.
- 03:17 PM Bug #3209: ecogrid SearchRegistryAction error when disconnected from network
- I'm reopening this since the error window now occurs regardless of any data sources actually being used (either the D...
- 02:51 PM Bug #3130: Add an accelerator (keyboard shortcut) for opening a new blank workflow
- Thanks Christopher, works great.
- 02:39 PM Bug #3206: ecogrid error message occurs when running disconnected from network
- I followed the procedure and duplicated this error message. However, i didn't see it hurt anything. I took a look at ...
- 02:34 PM Bug #3223 (New): interactive graphics in R
- Hello,
Just fyi, the identify() function does not seem to work when called from the RExpression actor. (I'm using... - 02:07 PM Bug #3222 (New): save new workflow template
- Hello,
This is a suggestion about usability, not a bug. It would be very nice to be able to save a workflow that... - 01:09 PM Bug #3144: add link in OSX Applications folder
- The mac installer now installs like this:
/Applications/Kepler/Kepler(.app) - launcher directory...includes most of ... - 12:18 PM Bug #3221 (New): offset new windows
- New blank workflow windows overlap exactly. It would be nice if each new window was slightly offset from the last.
- 11:35 AM Bug #3202: Remove the workflows directory from the release
- I created two clean targets in the build script so that you can either clean the directory for a windows or a mac ins...
04/14/2008
- 11:29 PM Bug #3130: Add an accelerator (keyboard shortcut) for opening a new blank workflow
- I merged these changes into the ptII tree, but not into
the ptII rel-7-0-beta-2 branch for two reasons:
1) Adding Con... - 01:26 PM Bug #3130: Add an accelerator (keyboard shortcut) for opening a new blank workflow
- This has been implemented in TableauFrame.java.
However, ClassDefinitionController.java already set meta-n to create... - 06:55 PM Bug #2962: Add metadata to data tokens so that it can be used downstream
- Turns out there is a strict vector test that does not allow extra attributes on a vector (used in barplot() method). ...
- 06:31 PM Bug #3179: Distinguish "download" and "information" attribute values in eml distributlon online url
- Modified the Entity and EML2Parser class. The value of attribute "function" in distribution url will be stored. In EM...
- 03:01 PM Bug #3140: RBNBToKepler2 actor output port generation problem
- niagara-dev is back up, contains a few empty channels and a channel with a period in its name, and all is well.
- 02:23 PM Bug #3220: "Save" from TextEditor interferes with workflow save-before-closing prompt
- aaron will take a look at this - really dives into the ptolemy code. Some starting places:
ptolemy.actor.gui.Effigy
... - 12:15 PM Bug #3220 (New): "Save" from TextEditor interferes with workflow save-before-closing prompt
- While editing an RExpression script using the built-in TextEditor ("Open Actor"), Kevin Drury found that if he used "...
- 01:41 PM Bug #3144: add link in OSX Applications folder
- I think the installed version is for users only. Developers who want to write java code should get a development ver...
- 01:13 PM Bug #2318: Copyrights and licenses of subpackages need to be handled
- IANAL (I am not a lawyer), but what I suggest is that you clearly document
that some portions of Kepler are released ... - 11:42 AM Bug #2318: Copyrights and licenses of subpackages need to be handled
- I have removed those from the RELEASE-BRANCH-1-0-0, I should have said. They are still in head.
- 11:40 AM Bug #2318: Copyrights and licenses of subpackages need to be handled
- I have removed rbnb-3.1b2.jar and RDIPD0Ensemble.jar (and associated code and workflows).
- 10:36 AM Bug #3216: Demo workflows do not run
- IPCC_Change_MinTemp.xml, IPCC_Change_Precip.xml, IPCC_Change_Rad,
IPCC_Change_Wind.xml, - Errors upon opening. Path ...
04/11/2008
- 05:43 PM Bug #2318: Copyrights and licenses of subpackages need to be handled
- If you need to remove a jar...
If there is a jar on the "bad list" and you cannot get the license fixed. (Say it is ... - 03:36 PM Bug #2318: Copyrights and licenses of subpackages need to be handled
- The problem with jar licenses illustrates one good reason to cleanly partition the Kepler system into a core of essen...
- 03:03 PM Bug #2318: Copyrights and licenses of subpackages need to be handled
- We have some major problems with licensing here. Very major problems.
Sean Riddle and I have examined licenses for o... - 03:06 PM Bug #3216: Demo workflows do not run
- It looks like most, if not all, of the problems reported here are Macintosh (and maybe Linux) specific!
I.e. workflo... - 03:04 PM Bug #3144: add link in OSX Applications folder
- Dan's suggestion that the folder structure in the OS X installation mimic the development version checked out of CVS ...
- 02:07 PM Bug #3144: add link in OSX Applications folder
- I took a look at the installation XML definition, with an eye toward hiding
away much of the complexity. I got it to ... - 02:12 PM Bug #3219: White space in installation path fails on config file read
- added to both the HEAD and the release branch
- 11:16 AM Bug #3219: White space in installation path fails on config file read
- *** Bug 3215 has been marked as a duplicate of this bug. ***
- 11:10 AM Bug #3219: White space in installation path fails on config file read
- I do not have write permissions yet for checking it in.
- 11:06 AM Bug #3219 (Resolved): White space in installation path fails on config file read
- When Kepler is installed on windows with white spaces in the installation path an exception is thrown from ConfigXML....
- 11:16 AM Bug #3215: Spaces in KEPLER path causes build problems
- Duplicate of bug 3219.
*** This bug has been marked as a duplicate of bug 3219 ***
04/10/2008
- 03:34 PM Bug #3122: Get installer size down
- windows installer with R: 166 MB
windows installer without R: 93 MB - 02:57 PM Bug #3122: Get installer size down
- added new build targets to pair down the kepler directory for each operating system. so far I have built a Mac insta...
- 01:55 PM Bug #2318: Copyrights and licenses of subpackages need to be handled
- The licensing on gnu-regexp-1.0.8.jar could be problematic. It is only used in org.ecoinformatics.util.Util.substitut...
- 11:45 AM Bug #2318: Copyrights and licenses of subpackages need to be handled
- Note that our proposal for handling LGPL jars in Kepler 1.0 is limited to those with version 3 of the LGPL license only.
- 11:30 AM Bug #2318: Copyrights and licenses of subpackages need to be handled
- David Welker is investigating the licenses for all 3rd-party jar files included in Kepler. Not all of them are BSD co...
- 11:49 AM Bug #3216: Demo workflows do not run
- I'm using MacOS 10.5.2, Java 1.5.0_13, with a 2.4 GHz processor and 2 gigs of RAM.
- 11:46 AM Bug #3130: Add an accelerator (keyboard shortcut) for opening a new blank workflow
- I'll postpone. Looking in Top.java, where I thought this change might go (now I'm not sure), it isn't immediately app...
- 11:23 AM Bug #3196: Find/Change license on gpl/lgpl code
- > Jianting Zhang suggests removing GRASS support in cpp/gis/grass from the Kepler
> distribution. Comments?
There a... - 11:06 AM Bug #3196: Find/Change license on gpl/lgpl code
- Source licenses update:
Jianting Zhang suggests removing GRASS support in cpp/gis/grass from the Kepler distribution...
04/09/2008
- 03:31 PM Bug #3026: Actor documentation does not appear in older workflows
- Done with all but ENM demos. I will wait until they all run before I run the automated document replacement.
- 02:28 PM Bug #3216: Demo workflows do not run
- IPCC_Change_MinTemp.xml, IPCC_Change_Precip.xml, IPCC_Change_Rad,
IPCC_Change_Wind.xml, - Errors upon opening. ---- ... - 12:41 PM Bug #3216: Demo workflows do not run
- ENM/GARP_SingleSpecies_BestRuleSet-IV.xml - After completing its ten iterations, actually crashes the Kepler environm...
- 11:32 AM Bug #3216 (Resolved): Demo workflows do not run
- I have run into a couple of demo workflows that don't run while checking the replacement of the embedded documentatio...
- 01:12 PM Bug #3195: Check all documentation for 1.0 release
- Kirsten has found a bunch of actors that still have no documentation. Here's the current list:
AddPointToSVG (no do... - 12:23 PM Bug #3182: check for consistent licensing text in all source files
- I was given permission by John Harris on 4/9/08 to change the license in the code owned by Numeric Solutions. I chan...
- 11:51 AM Bug #3126: add R system installation to the Mac installer
- This is now working on multiple computers. I'll send the installer out for others to test.
- 10:53 AM Bug #3187: RExpression actor does not share focus
- This will not be included in the branch of ptolemy (rel70b2) we are using to build kepler 1.0
Retargeting for after 1... - 10:14 AM Bug #3211: Need XSLT stylesheet to build actor docs
- created stylesheet and build target to build the actor documentation and an index to go with it.
04/08/2008
- 05:59 PM Bug #3215 (Resolved): Spaces in KEPLER path causes build problems
- Aaron Schultz reports - when trying to build under windows (in eclipse) with spaces in the -DKEPLER variable, Config...
- 10:51 AM Bug #3207: consolidate command line execution actors
- Hi Christopher,
Thanks for helping out. The Ptolemy Exec actor is called "External
Execution" in its KAR file, so th... - 10:38 AM Bug #3214: R actor does not handle single quotes in character string data
- R allows the use of single or double quotes to indicate character strings. The RExpression actor was using single qu...
- 10:34 AM Bug #3214 (Resolved): R actor does not handle single quotes in character string data
- When string values (in my case they were from a RecordToken emitted by the EML actor) include single quotes (or apost...
- 10:31 AM Bug #3213: R expression actor introduces leading/trailing whitespace
- Added the "strip.white=TRUE" parameter to calls to the scan() method in the R code we generate when dealing with char...
- 10:29 AM Bug #3213 (Resolved): R expression actor introduces leading/trailing whitespace
- When a temporary file is used for caching length R commands, leading whitespace is being added. The list values: "OB...
- 10:26 AM Bug #3212: EML2 Actor does not reconfigure available columns after initial download
- Added calls to the generteLabelListAndTypteListFromColumns() [sic] method whenever the _columns variable was modified.
- 10:24 AM Bug #3212 (Resolved): EML2 Actor does not reconfigure available columns after initial download
- After the selected entity has been changed for the EML actor, the ports are reconfigured to show the available column...
- 10:02 AM Bug #3209: ecogrid SearchRegistryAction error when disconnected from network
- added messagehandler error reporting when the services registry is not available.
if, on start up, there is an error ...
04/07/2008
- 09:21 PM Bug #3210: add netCDF support to Kepler
- The RExpression actor could also be used to read/write netCDF files using one of several netCDF packages available in...
- 04:56 PM Bug #3156: RBNBToKepler actors should only download data for connected ports.
- This has been fixed. I will close it when bug 3159 is closed.
- 04:55 PM Bug #3161: progress meter when downloading data with RBNBToKepler actors
- I'm using org.ecoinformatics.seek.datasource.DataSourceIcon now, and the icon renders "Busy" when busy.
If this is ... - 04:51 PM Bug #3155: RBNBToKepler actors should allow different output formats
- This has been added to the new DataTurbine actor.
Bug can be closed when bug 3159 is fixed. - 04:49 PM Bug #3140: RBNBToKepler2 actor output port generation problem
- I believe these are the answers to my original questions:
1) Does one need to do a Fetch to get channel types?
Yes.... - 03:39 PM Bug #3126: add R system installation to the Mac installer
- This works on my computer, but for some reason not on other computers. not sure why. reopening the bug.
- 11:36 AM Bug #3126: add R system installation to the Mac installer
- The installer can now include and launch the R installer. I tried figuring out a way to not have to launch the R ins...
- 10:46 AM Bug #3126: add R system installation to the Mac installer
- I've got this mostly working now. Just adding some finishing touches.
- 03:25 PM Bug #3211 (Resolved): Need XSLT stylesheet to build actor docs
- Kirsten wants to include the actor documentation in an indexed PDF along with the release. We need to write an XSLT ...
- 03:11 PM Bug #3198: test dynamic library installations on all platforms
- does not work on ubuntu. need to figure out how to set the LD_LIBRARY_PATH with izpack.
- 02:39 PM Bug #3198: test dynamic library installations on all platforms
- tested on windows. works.
- 02:15 PM Bug #3198: test dynamic library installations on all platforms
- tested on osx. works.
- 01:48 PM Bug #3209: ecogrid SearchRegistryAction error when disconnected from network
- I'd say show an alert when something is trying to use a data source, e.g. the ecogrid actor. Otherwise, ignore it.
- 12:32 PM Bug #3144: add link in OSX Applications folder
- I think that Kepler.app should be inside the Kepler folder mainly to keep the installed version looking like the CBS ...
- 12:00 PM Bug #3144: add link in OSX Applications folder
- Currently, Kepler is installed in /Applications/Kepler. The Kepler.app shortcut shows up in the Kepler folder. This...
- 12:04 PM Bug #2872: md5 checksums
- I will do this when the final installers are cut.
- 12:03 PM Bug #3199: include R 2.6 in the installer
- R 2.6.2 is now included in the windows and mac installer. We may want to have a non-R installer for both mac and win...
- 09:26 AM Bug #3196: Find/Change license on gpl/lgpl code
- IANAL, but my recollection of the LGPL is that you need to make the source code
available, but it is not necessary to...
04/04/2008
- 05:41 PM Bug #3196: Find/Change license on gpl/lgpl code
- Apache-licensed code is generally redistributable in both source and binary forms (it is similar to BSD), although it...
- 05:31 PM Bug #3196: Find/Change license on gpl/lgpl code
- Ok, we're looking more deeply into LGPL. Thanks, Christopher. I think we'll at least need to include the source code...
- 03:04 PM Bug #3196: Find/Change license on gpl/lgpl code
- I also thought that LGPL'd code should be acceptable.
But what about the Apache Licence, Kepler has a whole bunch o... - 02:54 PM Bug #3196: Find/Change license on gpl/lgpl code
- I might be confused, but I thought that LGPL code was ok to include
because it is non-viral
http://ptolemy.eecs.berke... - 02:39 PM Bug #3196: Find/Change license on gpl/lgpl code
- The jar file lib/jar/cipres/jacorb.jar needs to be removed and dependencies on it satisfied some other way. The Jaco...
- 05:01 PM Bug #2965: Ability to easily concatenate identical data structures (EMLDatasource)
- I've worked with kevin to implement this in some of his workflows.
I've also packaged a custom R actor called "UnionA... - 02:44 PM Bug #3154: Documentation missing for DarwinCoreDataSource
- added documentation to the actor moml and also added method for pulling the documentation from the actor library for ...
- 10:06 AM Bug #3209: ecogrid SearchRegistryAction error when disconnected from network
- sounds like some error catching is in order. should there be an alert using MessageHandler (attack of the pop up win...
- 10:00 AM Bug #3209 (Resolved): ecogrid SearchRegistryAction error when disconnected from network
- About 30 seconds after starting kepler with no network connection, a long error
message is displayed, starting with:... - 10:05 AM Bug #3210 (New): add netCDF support to Kepler
- Many scientific data sets are represented in netcdf format (http://www.unidata.ucar.edu/software/netcdf/). Kepler sh...
- 09:17 AM Bug #3208: consolidate matlab actors
- I can help on this one.
Combining the two actors seems reasonable to me.
In addition, the expression language has a ... - 09:10 AM Bug #3208 (New): consolidate matlab actors
- MatlabExpression and PtMatlabExpression both execute expressions
in matlab. They should be combined such that if the... - 09:12 AM Bug #3207: consolidate command line execution actors
- The Ptolemy Exec actor also has duplicate functionality.
I looked at CommandLineExec and it looked like it
really nee... - 09:03 AM Bug #3207 (Resolved): consolidate command line execution actors
- Command Line Exec and External Execution have different interfaces
but perform the same basic functionality. They sh...
04/03/2008
- 04:30 PM Bug #3206 (Resolved): ecogrid error message occurs when running disconnected from network
- [java] ERROR (org.ecoinformatics.seek.datasource.EcogridDataCacheItem:cleanUpCache:373) Couldn't close the output str...
- 01:51 PM Bug #3201: Remove all links to FSM from the GUI
- It looks like this works. I'll close this, but if anyone has any objections to the way this works or thinks it break...
- 01:46 PM Bug #3200: create a 1.0.0 branch in cvs
- The branch is there. See kepler-dev email for checkin instructions.
- 01:12 PM Bug #3167: Customize documentation fails when ports added
- This seems to work for me. I might have fixed it and forgotten to close this bug. reopen this bug if it fails to wo...
- 01:08 PM Bug #3138: remove the distributed options menu item for 1.0 release
- both have now been removed from the release branch.
- 09:24 AM Bug #3205 (New): gdalTranslate actor crashes on bad format and won't work with all gdal formats
- Niels Hoffman reports that the gdalTranslate actor will not work with all of the current formats supported by gdal_tr...
- 08:00 AM Bug #3203: Add dateType
- See also https://chess.eecs.berkeley.edu/bugzilla/show_bug.cgi?id=141
"Plotter should be better about displaying times" - 06:44 AM Bug #2571: position of new elements on screen
- One way to do this would be to translate the coordinates
relative to the location of the mouse. - 06:41 AM Bug #3110: Can't access actors via http
- I can't replicate my own bug (Can't access actors via http),
so I'm closing this.
04/02/2008
- 04:32 PM Bug #3162: ptExecuteConfig.xml depends on removed basicKeplerLibrary.xml
- basicKeplerLibrary is not necessary to run ptexecute and has been removed from
ptExecuteConfig.xml. - 04:15 PM Bug #3097: incorrect classpath in generated ptexecute.sh and momlexecute.sh
- I added a new target to the build file: 'ant build_wfexecute_sh' creates
wfexecute.sh, which accepts -gui/-nogui and ... - 09:13 AM Bug #3097: incorrect classpath in generated ptexecute.sh and momlexecute.sh
- On the 1.0 release conference call, we discussed creating one shell script to replace all of the current ones. There...
- 03:11 PM Bug #2509: FSM & Modal Model Menu selections do not work
- I hadn't realized about the State button being on the toolbar. So it seems that we can successfully create an FSM. S...
- 02:47 PM Bug #2509: FSM & Modal Model Menu selections do not work
- In Ptolemy, a State does appear in the left hand palette.
This state is not present in Kepler.
However, in both Ptol... - 02:28 PM Bug #2509: FSM & Modal Model Menu selections do not work
- Actually, the problem was not with the menu item itself -- the problem is that when you create an FSM model, the acto...
- 02:17 PM Bug #2509: FSM & Modal Model Menu selections do not work
- File | New Workflow | FSM Model
and
File | New Workflow | Modal Model
both work for me.
I'm marking this as fixed, ... - 08:59 AM Bug #2509: FSM & Modal Model Menu selections do not work
- moving to post 1.0
- 02:19 PM Bug #3201: Remove all links to FSM from the GUI
- Ok, I've fixed bug #3022 and bug #2509.
bug #3204 is a RFE for FSM examples to be added to Kepler
Unless someone ind... - 09:38 AM Bug #3201: Remove all links to FSM from the GUI
- Mainly the reason is that we don't have time to re-integrate it and figure out all of the dependencies that we've bro...
- 09:31 AM Bug #3201: Remove all links to FSM from the GUI
- I feel that Kepler should ship with FSM.
What's the reasoning behind not shipping FSM?
There is this bug:
FSM State ... - 09:00 AM Bug #3201 (Resolved): Remove all links to FSM from the GUI
- We are postponing re-adding the FSM items to kepler to post-1.0. All GUI items related to FSM should be removed from...
- 02:15 PM Bug #3204 (New): Kepler should have FSM examples
- Finite State Machines are very powerful, there should
be a Kepler-specific scientific workflow that
illustrates FSMs. - 11:31 AM Bug #3022: FSM State cannot be opened from context menu
- The issue here is that in Ptolemy, the transition menu choices
are "Look Inside", not "Open Actor".
See bug #2110 f... - 08:58 AM Bug #3022: FSM State cannot be opened from context menu
- moving to post 1.0.
- 11:13 AM Bug #3203 (Resolved): Add dateType
- Add a date type to Kepler; being able to pass date tokens between a variety of actors would be nice. My original moti...
- 10:50 AM Bug #3196: Find/Change license on gpl/lgpl code
- Here are the GPL'd and LGPL'd sources Sean Riddle found in the
Kepler source tree (with known authors/copyright hold... - 08:45 AM Bug #3196 (Resolved): Find/Change license on gpl/lgpl code
- We need to find any code and/or libraries that currently are using gpl or lgpl as the license and negotiate with the ...
- 10:30 AM Bug #2531: The link from Kepler intro page to the Ptolemy quick links page is broken
- This bug is ready to be closed.
It should be checked in the release branch and then closed. - 10:16 AM Bug #2531: The link from Kepler intro page to the Ptolemy quick links page is broken
- This bug could be assigned to me.
I just added CCodeGenerator to this list of classes to be
excluded in:
kepler/conf... - 08:51 AM Bug #2531: The link from Kepler intro page to the Ptolemy quick links page is broken
- Ilkay will take this on. We basically need to make sure that any ptII demos that are actually linked to the kepler d...
- 09:27 AM Bug #3172: windows mouse wheel doesn't scroll canvas
- This is fixed in the ptII devel branch. See:
https://chess.eecs.berkeley.edu/bugzilla/show_bug.cgi?id=73
I believe ... - 09:13 AM Bug #3172: windows mouse wheel doesn't scroll canvas
- This should be fixed with the other ui bugs that are outstanding. pushing this to 1.1.
- 09:10 AM Bug #3149: cannot add arbitrary jars when exporting archive
- postponing to 1.1.0 There are numerous items that need to be worked out with this bug. How the user interacts with ...
- 09:09 AM Bug #3130: Add an accelerator (keyboard shortcut) for opening a new blank workflow
- If this bug is easily fixable, do it. If not, postpone it.
- 09:08 AM Bug #3115: Need to check Kepler for memory leaks
- We should run each of the demo workflows with a memory usage analyzer to make sure that no major leaks are found with...
- 09:06 AM Bug #3108: ENM GARP Baseline 3-Actor GARP - Browser Display demo fails with NameDuplication: convertTo?
- We should not be linking to any workflows that do not work. All html links need to be checked and if any broken work...
- 09:04 AM Bug #3126: add R system installation to the Mac installer
- *** Bug 3101 has been marked as a duplicate of this bug. ***
- 08:48 AM Bug #3126: add R system installation to the Mac installer
- We should also try to get this to work with the NMI build.
- 09:04 AM Bug #3101: Inclusion of R executable for Mac and Linux ?
- duplicate bug of 3126
*** This bug has been marked as a duplicate of bug 3126 *** - 09:03 AM Bug #3074: Code library installation issues
- postponing this development until after 1.0. We just don't have the time to get this done. This will be something k...
- 09:02 AM Bug #3202 (Resolved): Remove the workflows directory from the release
- Many of the workflows in this directory are broken, and although they are useful as examples, we do not want to inclu...
- 08:57 AM Bug #3144: add link in OSX Applications folder
- also need to clean up the installer for osx. make sure no windows specific files are included. Sean also agreed to ...
- 08:54 AM Bug #3200 (Resolved): create a 1.0.0 branch in cvs
- We need a branch for 1.0 targeted development so that normal dev can go on in the head. Any items that need to be in...
- 08:52 AM Bug #3122: Get installer size down
- Try to locate all extraneous items and remove them from the installer.
- 08:50 AM Bug #3199 (Resolved): include R 2.6 in the installer
- We are currently including 2.4 in the windows installer. we'd like to upgrade that to 2.6 and also see if we can get...
- 08:49 AM Bug #3198 (Resolved): test dynamic library installations on all platforms
- Make sure that the dylibs work on windows, osx and linux and that they get put in the correct place by the installer.
- 08:41 AM Bug #3195 (Resolved): Check all documentation for 1.0 release
- All of the documentation needs to be checked for accuracy and completeness before the 1.0 release, which is currently...
04/01/2008
- 06:22 PM Bug #3124: Automatically refresh ecogrid sources (endpoints) once per Kepler
- data sources are now refreshed by a new thread that is scheduled to execute 30 seconds (configurable in config.xml) a...
- 02:49 PM Bug #3124: Automatically refresh ecogrid sources (endpoints) once per Kepler
- from 1.0.0 release meeting:
-at startup, queue a thread for refreshing the endpoints after a small delay (~minute) - 03:39 PM Bug #3179: Distinguish "download" and "information" attribute values in eml distributlon online url
- Here are solutions after the 04/01/2008 telephone conference:
1. Modify the query to exclude the eml packages which o... - 03:02 PM Bug #3192: behavior of documentation actor
- I may have found the reason for the loss of my documentation after the first view in Windows XP. When I right-click ...
- 03:01 PM Bug #3154: Documentation missing for DarwinCoreDataSource
- -solicit information from Dave V. and Jing to flesh out documentation in the actor library
-include actor documentati... - 10:11 AM Bug #3147: Get rid of Swing componets in Ecogrid data access classes
- As ben said, this bug was fixed.
03/31/2008
- 11:58 PM Bug #3194 (New): add actors to support Sun Grid
- Chirs Zhu <chris.zhu@sun.com> and others at Sun have contributed actors that allow Kepler to be used as a client for ...
- 04:38 PM Bug #3192 (New): behavior of documentation actor
- Hello. The documentation actor will be an important component of workflows that outlive individual analyst's involve...
- 03:00 PM Bug #3103: Building actor documentation from within Kepler fails
- This is now fixed. The documentation can be edited with the Customize function.
- 01:36 PM Bug #3187: RExpression actor does not share focus
- I think you have it inverted. the frame _won't_ be null in our Kepler case for the R actor. The code block should b...
- 01:16 PM Bug #3187: RExpression actor does not share focus
- Ok, I put the setTitle inside the if block, so this might now work.
What we have is:
if (frame == null) {
... - 11:14 AM Bug #3187: RExpression actor does not share focus
- It's less than ideal to have a bunch of open text editor windows all named "Unnamed".
But I think we can handle it fo... - 12:43 PM Bug #3152: Use EcoGridServicesController with EcoGridWriter actor
- retargeting for after 1.0 - not a high priority.
- 12:38 PM Bug #3147: Get rid of Swing componets in Ecogrid data access classes
- I believe this is fixed. There was spot in the EML actor that was using Swing directly, but I replaced that with Mes...
- 12:18 PM Bug #3138: remove the distributed options menu item for 1.0 release
- We should also remove the DCA actor from the tree to be sure it isn't used, and check the documentation to be sure we...
- 11:24 AM Bug #3184: right-click context menu in RExpression actor
- the best solution for adding a feature like code commenting would be to use an external editor.
there's apparently a ... - 11:17 AM Bug #3185: Ctrl-z does not "undo" in RExpression actor
- This has been added in the ptolemy base classes now.
- 11:16 AM Bug #3186: commit RExpression code changes, but leave actor open
- Rather than just double clicking on the actor, if you "Open" the actor, the expression editing window will appear. c...
- 11:15 AM Bug #3191: Merge TextEditor changes with ptII source
- closing this bug - I'm happy with the undo/redo. (thanks, cxh)
03/29/2008
- 08:53 PM Bug #3191: Merge TextEditor changes with ptII source
- Ok, I updated Query, UndoListener and TextEditor in the ptII tree and
removed these files from kepler/src/exp/ptolemy... - 08:46 PM Bug #3187: RExpression actor does not share focus
- The change to TextEditorTableau is marked below
if (frame == null) {
frame = new TextEditor(title...
03/28/2008
- 02:48 PM Bug #3191 (Resolved): Merge TextEditor changes with ptII source
- These changes from src/exp in Kepler should be included in the ptII tree:
src/exp/ptolemy/gui
Query.java
UndoL...
03/27/2008
- 04:54 PM Bug #3187: RExpression actor does not share focus
- Until a change is included in ptII code (specifically ptolemy.actor.gui.TextEditorTableau), only one RExpresison text...
- 03:26 PM Bug #3187: RExpression actor does not share focus
- By using the ptolemy.actor.gui.TextEditor when "Open Actor" is invoked on the RExpression we can support having multi...
- 03:28 PM Bug #3185: Ctrl-z does not "undo" in RExpression actor
- from kepler-dev email that i sent:
---
After looking at this again, I realized it could be made even more
generic b... - 10:19 AM Bug #3185: Ctrl-z does not "undo" in RExpression actor
- Locally, I have implemented an UndoableEditListener for the JTextArea that is used in ptolemy.gui.Query along with so...
- 03:09 PM Bug #3186: commit RExpression code changes, but leave actor open
- Proposed implementation (working locally for me):
By using the ptolemy.actor.gui.TextEditor when "Open Actor" is invo...
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