Activity
From 05/25/2009 to 06/23/2009
06/23/2009
- 06:29 PM Bug #4182: Composite Actor input port tokens not recorded
- There is no port event to record. To see this, do a 'Listen to Port' on the composite's input port. Port events do no...
- 05:35 PM Bug #4182 (Resolved): Composite Actor input port tokens not recorded
- I have a String Constant actor connected to an input port of a composite actor (see attached) and there is no port ev...
- 04:19 PM Bug #3632: TPC exceedence notification feature
- Okay - fairly easy to look up values from the ReportInstance.
Now it's just a matter of making a standard report elem... - 01:53 PM Bug #3632: TPC exceedence notification feature
- i'm going to take a stab at extracting a field from the reportinstance (post run) and adding a field to the WorkflowR...
- 03:24 PM Bug #4180: Kepler command-line execution with cache
- Added to ConfigurationApplication the ability to load a config from the command line. Added a configuration to keple...
- 02:51 PM Bug #4180: Kepler command-line execution with cache
- Ptolemy now has a baseclass that does not set the look and feel.
The log message says:
-start---
Created base class ... - 10:44 AM Bug #4180: Kepler command-line execution with cache
- Now works by using the ptolemy.moml.MoMLCommandLineApplication from within org.kepler.loader.Kepler. This should eve...
- 07:42 AM Bug #4180 (Resolved): Kepler command-line execution with cache
- For the webservice execution implementation, we need to be able to run workflows w/o the gui but with the cache enabl...
- 02:30 PM Bug #4174: Actor library not building correctly
- yeah, rev 19364 of KarFile was the problem, I've rolled back that change and it is working again.
- 11:07 AM Bug #4174: Actor library not building correctly
- Break occurs in r19364, changes to trunk/modules/core/src/org/kepler/kar/KARFile.java:
"subtle correction: if we find... - 10:49 AM Bug #4174: Actor library not building correctly
- This is now a problem in the kepler suite as well.
- 10:47 AM Bug #4174: Actor library not building correctly
- Narrowing this down a little: broken in r19366, but not in r19350.
- 01:46 PM Bug #4102: Add the ability to insert a static image into the report.
- Can now specify a header image in the ReportLayout (cascades into the rendered version, too).
Not yet a way to specif... - 01:44 PM Bug #4181: WRM - provenance sql.properties "DB Name" ignored
- now pointing to the cache's hsqldb instance (running in server mode).
no longer need to treat the dbname in the prope... - 08:11 AM Bug #4181 (Resolved): WRM - provenance sql.properties "DB Name" ignored
- my sql.properties bundle has a different DB Name setting (so that I can connect to the cache's hsqldb instance).
Whe... - 10:54 AM Bug #3957: Report Designer - remove items of interest from the list
- This bug is being closed because we are switching to using the outline view of the workflow for adding dynamic report...
- 07:48 AM Bug #3672: Open/Save Workflow as KAR Archive
- this is not actually a bug about "Opening" a workflow - it has to do with "Importing"
I'd previously misunderstood. R... - 07:37 AM Bug #3992: Report Designer - finalize Report item properties
- [image] width and whether to scale-to-fit are now optional properties on every item.
06/22/2009
- 06:13 PM Bug #4138: Workflow Run Manager - search cell edit focus isn't lost appropriately
- This was partially fixed with r19403. Cell editors that extend DefaultCellEditor still have the problem.
- 05:46 PM Bug #4174: Actor library not building correctly
- Not sure if the problem is still "actor library not building correctly" but I'm not seeing components in the tree in ...
- 05:37 PM Bug #4179: ant jar does not include configs/
- Here is the code from line 106:
dirs.add( module.getTargetClasses() );
dirs.add( module.getSrc() );
... - 05:34 PM Bug #4179 (Resolved): ant jar does not include configs/
- The jars produced by 'ant jar' do not include any of the files in configs/.
- 05:19 PM Bug #4170: Ensure reporting/provenance do not rely on any GUI classes
- as far as reporting is concerned, this is done. need to make sure the -nogui ("withcache") run is working.
- 01:42 PM Bug #4170: Ensure reporting/provenance do not rely on any GUI classes
- ReportingListener is now added to the MOML model by the Initializer if not already present.
Once the model is saved (... - 04:31 PM Bug #4122: File -> Save As does not assign new LSID
- Save as now assigns a new LSID.
- 04:21 PM Bug #3996: Report Model - [de]serialize Items of Interest
- closing this - not needed since we are using the Outline viewer as a source for items of interest
- 03:58 PM Bug #3994: Report Designer - use "workflow outline" rather than Items of Interest
- now the top portion of the ItemsOfInterestPanel [re]uses the workflow outline view of the workflow contents. you can ...
- 03:44 PM Bug #4149: Workflow Run Manager - Export Runs feature
- The problem in comment #2 was fixed some time ago.
- 12:23 PM Bug #4178 (Resolved): error handling with MoMLCommandLineApplication
- It would be nice if MoMLCommandLineApplication called Manager.run() instead of execute() so that any execution listen...
06/19/2009
- 09:39 PM Bug #3994: Report Designer - use "workflow outline" rather than Items of Interest
- This is now a viable source for ports AND parameters.
I'd like to use it as the sole source for Dynamic Report Items.
- 08:17 PM Bug #3994: Report Designer - use "workflow outline" rather than Items of Interest
- I've modified the designer panel to allow it to accept dragged objects (NamedObjs) from the outline view.
This is a m... - 09:27 PM Bug #4177: WRP - look up Parameter values from Provenance
- added a method to provenance to look up the type (port/parameter/etc).
using that to decide where/how to retrieve the... - 08:31 PM Bug #4177 (Resolved): WRP - look up Parameter values from Provenance
- Turns out Parameter values are stored differently than the tokens that are passed among actors.
Will need to augment... - 07:24 PM Bug #2493: actor repository tracking bug
- this isn't just for Actors - this is for Workflows. Just want to make sure we're all keeping that in mind.
The same "... - 05:57 PM Bug #4036: WRM - connect to configurable provenance store
- the config dialog is not being shown now - so we don't really need to worry too much about this [for SANParks].
I'm g... - 05:54 PM Bug #4164: Associated Data - wf_exec_id behavior
- I'm unable to get this bug to occur today...but Dan was seeing it today.
- 05:02 PM Bug #4164: Associated Data - wf_exec_id behavior
- Examples showing weird behavior of selects on associated_data table
- 05:54 PM Bug #4176 (Resolved): Report Designer - opening KAR omits title
- When I:
-design a report layout and "Export to KAR"
-close Kepler
-run Kepler
-open the kar "Open KAR"
I get mos... - 04:56 PM Bug #3992: Report Designer - finalize Report item properties
- augmented the style sheet (XSLT) to handle some Item Properties:
handle:
-new subclasses of StaticReportItem (HR)
-It... - 03:53 PM Bug #3992: Report Designer - finalize Report item properties
- all static report items currently have: HEIGHT and WIDTH properties.
HR Items have only WIDTH.
more to come... - 03:52 PM Bug #3992: Report Designer - finalize Report item properties
- doing some work on this
- 12:42 PM Bug #4160: EML - Dynamic data retrieval
- Jim has this working in the riverflow tpc.
And I've recently made the "check for latest" feature of EML work as it ne... - 12:41 PM Bug #3672: Open/Save Workflow as KAR Archive
- related to other bug that is slightly reporting-specific.
same functionality, however - 12:18 PM Bug #3999: WRP - create event-driven states for Kepler
- using this to update the Report Viewer when the view is selected. Also alerts the Report View TOC of a report instanc...
- 12:15 PM Bug #4172: Use DEV server for registry in the WRP suite
- WRP is pointing to dev for:
registry
authentication
repository - 12:07 PM Bug #4175: EML - Verify check latest revision
- tested with the attached workflow - i'm happy with this.
- 12:05 PM Bug #4175: EML - Verify check latest revision
- NOTE: in order for this to function properly, it must be run in the WRP suite of kepler that currently points to the ...
- 12:02 PM Bug #4175: EML - Verify check latest revision
- When the EML actor initializes, it will check for the latest and get the latest if the checkbox is selected.
When a W... - 09:13 AM Bug #4175 (Resolved): EML - Verify check latest revision
- Need to make sure this is working correctly when a WF is [re]opened and run.
It needs to pull in any new (or deleted... - 09:34 AM Bug #4174: Actor library not building correctly
- It has been verified that this fix worked and the Components are showing up again in the actor library.
06/18/2009
- 11:36 PM Bug #4174: Actor library not building correctly
- It seems that the tagging module is overriding the ontologies. It just so happens that the kepler-component.owl file...
- 09:19 PM Bug #4174 (Resolved): Actor library not building correctly
- Many of the actors are not appearing in the actor library when using the WRP suite. No visible errors are given...
- 06:11 PM Bug #4122: File -> Save As does not assign new LSID
- We need this to be fixed for the SANParks release...I think this will be pretty confusing for the user.
- 05:15 PM Bug #4160: EML - Dynamic data retrieval
- looks like we got this going in terms of getting the existing tables.
next up: check for latest revision! - 08:38 AM Bug #4160: EML - Dynamic data retrieval
- testing this new output format with R actor downstream - looks promising, but deferring to Jim's R expertise to get t...
- 05:11 PM Bug #4151: exported RIO and ROML doc run-pairs have same KeplerLSID
- I've prepended the workflow name to the ROML.xml entry that is generated.
While it's non-unique, perhaps it's the fir... - 04:58 PM Bug #4151: exported RIO and ROML doc run-pairs have same KeplerLSID
- Okay - that makes more sense: same kar entry name (ROML.xml) but different LSIDs
That'll definitely need to be addres... - 11:57 AM Bug #4151: exported RIO and ROML doc run-pairs have same KeplerLSID
- I thought that too; not aware of any changes to that code.
I think this problem only occurs when you're trying to ex... - 11:50 AM Bug #4151: exported RIO and ROML doc run-pairs have same KeplerLSID
- i thought we made it so that if they had the same LSID and the same name, we'd only include the last one that was add...
- 11:23 AM Bug #4151: exported RIO and ROML doc run-pairs have same KeplerLSID
- This breaks the ability to export more than one run, since each run will have a ROML.xml, and an error about duplicat...
- 08:58 AM Bug #4151: exported RIO and ROML doc run-pairs have same KeplerLSID
- for the time being, both ROMLs will be included.
- 01:54 PM Bug #4172: Use DEV server for registry in the WRP suite
- http://dev.nceas.ucsb.edu/registry/services/RegistryService is now providing services that point to DEV (not producti...
- 01:28 PM Bug #4172: Use DEV server for registry in the WRP suite
- The servers are set up and ready to go.
I'm currently updating the registry entries so that we point to the correct ... - 01:26 PM Bug #4172 (Resolved): Use DEV server for registry in the WRP suite
- For testing and training it will be very useful to have dev.nceas.ucsb.edu and kepler-dev.nceas.ucsb.edu set up as ou...
- 01:16 PM Bug #4171: dragging actor to canvas then back to component tree area gives NPE
- It looks like this bug is specific to the wrp suite; I don't get it in the kepler trunk or the workflow-run-manager m...
- 01:00 PM Bug #4171: dragging actor to canvas then back to component tree area gives NPE
- I can't reproduce this in Ptolemy or Kepler on the Mac under Java 1.5.0_19.
What platform and version of Java are you... - 12:03 PM Bug #4171 (Resolved): dragging actor to canvas then back to component tree area gives NPE
- I'm getting an NPE when I drag a component out to canvas, don't drop, and then drag it back over the component tree a...
- 12:22 PM Bug #4164: Associated Data - wf_exec_id behavior
- I'm looking into this...
- 11:38 AM Bug #4020: WRP - create WorkflowRun object to encapsulate provenance/report instances
- So to have an example all in one place, this is what an example workflow-run moml metadata doc. If everyone (e.g. mik...
- 11:11 AM Bug #4161: Develop kepler workflow execution engine
- In the client-side GUI version of Kepler we open/run workflows and reports like so:
1-Open KAR (contains the workflow... - 09:08 AM Bug #4161: Develop kepler workflow execution engine
- After discussion with Jing and Derik yesterday:
1-we need to make sure we have a server-side version of Kepler that i... - 10:56 AM Bug #2493: actor repository tracking bug
- I started working on this yesterday. I found major problems with how lsids are assigned when uploading to the reposi...
- 10:41 AM Bug #4169: Build "server-side" installation of Kepler
- Jing and I are working on figuring out how to deploy kepler for the webservice. The jars for kepler can easily be cr...
- 10:18 AM Bug #4169 (Resolved): Build "server-side" installation of Kepler
- Sounds like the Kepler webservice uses a snapshot (jar?) of Kepler to execute workflows via the webservice.
For sanp... - 10:40 AM Bug #4021: KAREntry Handler
- We have the following KAREntryHandlers:
-ActorMetadata (for workflows/momls)
-ReportLayout (for ROML)
-ReportInstance... - 10:28 AM Bug #4170 (Resolved): Ensure reporting/provenance do not rely on any GUI classes
- I'm not entirely sure how much of the "GUI" code is ever called when we execute a workflow fromthe command line. But ...
- 09:49 AM Bug #4168 (New): User documentation creates bloat in workflows
- Currently, the user documentation is copied into every actor instance as the actor is drug to the canvas. The proble...
- 09:11 AM Bug #4163: erroneous hsql database creation
- retargeting - be good if this was resolved.
I'm also thinking we should change the default provenance store to use th...
06/17/2009
- 07:10 PM Bug #3898: update .kepler instead of removing it between versions
- Progress on this bug. The InstanceAuthNamespace is kept at the project root. A configuration directory is now creat...
- 07:00 PM Bug #2493: actor repository tracking bug
- I'm starting to upload KARs, sets of metadata docs that point at them (workflows and workflow runs) and sets of acces...
- 06:36 PM Bug #4164: Associated Data - wf_exec_id behavior
- I'm still seeing this in wrp, even after a full clean. It seems to consistently begin happening on the third instance...
- 12:37 PM Bug #4160: EML - Dynamic data retrieval
- new data output format emits information about each datatable (including the pointer to the cache file).
This allows ...
06/16/2009
- 04:10 PM Bug #4164: Associated Data - wf_exec_id behavior
- Also once it starts happening, it seems to happen every time, even new kepler instances.
- 04:07 PM Bug #4164: Associated Data - wf_exec_id behavior
- This is what I did, twice, to the same effect, but if it's a race condition I wouldn't be surprised if it was just co...
- 03:53 PM Bug #4164: Associated Data - wf_exec_id behavior
- I'm seeing this issue again, reopening.
- 12:13 PM Bug #4164: Associated Data - wf_exec_id behavior
- i'm not finding this as a problem - changed a bunch of stuff with how files are written and it seems to be happy now....
- 03:25 PM Bug #4161: Develop kepler workflow execution engine
- Here is matt's comment:
<matt> hey jing
<matt> i saw your bugzilla note about retrieving KAR files by LSID
<jing> hi,... - 03:11 PM Bug #4161: Develop kepler workflow execution engine
- Of course, adding metacatID is a short term solution.
- 03:09 PM Bug #4161: Develop kepler workflow execution engine
- In execute(workflowID) method, we need to get the kar file from metacat first.
To my understanding. The workflowID w...
06/15/2009
- 07:44 PM Bug #4164 (Resolved): Associated Data - wf_exec_id behavior
- Derik and I are running into a rather odd problem when querying the ASSOCIATED_DATA table for records. It appears tha...
- 06:38 PM Bug #4163: erroneous hsql database creation
- I should also mention that I also see the same four files where I would expect to see them, in C:\Documents and Setti...
- 06:34 PM Bug #4163 (Resolved): erroneous hsql database creation
- When I run the wrp suite on my windows machine a new directory appears inside of the wrp module directory called "Doc...
- 04:23 PM Bug #4147: Error message with selectable text
- It turns out that this fix causes the dialogs to be very wide because
the JTextArea is one line, whereas JLabel wraps... - 04:15 PM Bug #3801: open dialog, common places pane has white box instead of text
- Assigning this to myself.
- 04:15 PM Bug #3801: open dialog, common places pane has white box instead of text
- I'm reopening this bug, there are problems with the code under:
* Windows Server 2003 via Windows Remote Desktop. Ja... - 03:53 PM Bug #4162 (New): using the alt key makes menus appear in strange places on OSX
- if you do alt-F or alt-E on the mac, the menu shows up on the application window instead of coming down from the menu...
- 03:15 PM Bug #4103: Add the capability of creating SECTIONS in the report.
- Yes, you are correct, it was identified as a high priority for the first release. In addition, this bug is being work...
- 01:57 PM Bug #4103: Add the capability of creating SECTIONS in the report.
- i believe this was identified as a high priority for 2a1. we can retarget if i was mistaken
- 03:06 PM Bug #4161 (Resolved): Develop kepler workflow execution engine
- Here is the an email from matt:
I think the next stage would be to have you work on
putting together an execution... - 03:04 PM Bug #3672: Open/Save Workflow as KAR Archive
- we absolutely need to Save and Open KARs that contain:
-1 workflow (MOML)
-1 report layout (ROML) - 03:01 PM Bug #3649: determine if Provenance has everything needed by Reporting
- we do have all the file artifacts being inserted.
I note the comment about provenance storing things from plotting ac... - 03:01 PM Bug #4149: Workflow Run Manager - Export Runs feature
- Exporting runs where reporting has been used is now broken. I don't know why yet. I get this error:
java.lang.NullPo... - 01:28 PM Bug #4149: Workflow Run Manager - Export Runs feature
- perhaps split this bug into two - one for the very near 2a1 release and another for the full-REAP/2.0 version?
- 03:00 PM Bug #4151: exported RIO and ROML doc run-pairs have same KeplerLSID
- In the case where I don't do anything with reporting, I get ROML.xml and ROML.N.xml files. The files are identical an...
- 02:54 PM Bug #3936: Report Viewer - handle Image items
- we are able to serialize to the XML file - even better!
- 02:48 PM Bug #4160 (Resolved): EML - Dynamic data retrieval
- The existing EML actor is able to get the latest revision of a datapackage.
We need to augment EML data access and a... - 02:30 PM Bug #3992: Report Designer - finalize Report item properties
- Some recommendations for 2a1:
Images:
-height/width
-scale-to-fit (either)
HR:
-width
-weight
Labels:
-N/S/E/W
-re... - 02:28 PM Bug #3957: Report Designer - remove items of interest from the list
- leave out of 2a1 - not needed if we use Outline view for the designer
- 02:10 PM Bug #3942: Report Designer - add/edit item labels
- we definitely need labels for the items
- 02:01 PM Bug #4102: Add the ability to insert a static image into the report.
- i believe this was also identified as important for the training
- 01:56 PM Bug #3994: Report Designer - use "workflow outline" rather than Items of Interest
- i'm going to push that this be the approach we take for the 2a1 release.
- 01:51 PM Bug #3638: Report design features, Stage 2
- The ability to add a section header has already been added. Still need to incorporate them into the report model and...
- 01:40 PM Bug #3638: Report design features, Stage 2
- I believe section headers are a must for this 2a1 release.
Headers and footers are more or less already there (the co... - 01:42 PM Bug #4159 (Resolved): Cut 2.0-alpha/SanParks release
- Tasks:
* Cut the release (tag)
* Create installers for mac, windows, linux
* test all 2.0-alpha targeted functi... - 01:36 PM Bug #3635: Create ReportItem Type Hierarchy
- not a 2a1-critical bug. leaving in sanparks release
- 01:35 PM Bug #3632: TPC exceedence notification feature
- for 2a1 release - we'll be using a "special" report item that will identify a TPC as being Normal or Exceeded. This n...
- 01:33 PM Bug #3996: Report Model - [de]serialize Items of Interest
- still advocating for shifting our efforts toward an Outline-view-based approach to items of interest.
Leaving this ou... - 01:32 PM Bug #3995: Report Model - [de]serialize Report Item properties
- item properties are being handled as expected
- 01:31 PM Bug #4000: WRP - upload PRAs to repository
- this overlaps with the KAR upload. almost entirely. maybe even entirely
- 01:26 PM Bug #4148: Workflow Run Manager - Upload to Repository feature
- crucial for the 2a1 release
- 01:25 PM Bug #4036: WRM - connect to configurable provenance store
- retarget for release. sounds as though it can be closed [soon].
- 11:37 AM Bug #4144: Workflow Run Manager - moving columns / new windows bug
- Fixed in r19238. Refactored to rely on natural jtable mechanisms for tracking movement.
- 11:21 AM Bug #4101: Report Designer - Create a manager class for the Static Report Items
- The manager class has been added, though it is likely to need to need additional enhancements. The SWING components ...
06/14/2009
- 09:14 AM Bug #4002: RExpression2 - handle arbitrary R data structures
- added handling (from the old RExpression1 implementation) for [un]serializing complex R data objects to disk.
This is...
06/12/2009
- 07:53 PM Bug #4147: Error message with selectable text
- Fixed!
- 07:53 PM Bug #4147: Error message with selectable text
- I'm lowering the priority of this and changing it to an enhancement because
the code works as expected.
I agree that ... - 02:25 PM Bug #4020: WRP - create WorkflowRun object to encapsulate provenance/report instances
- Thanks for the help Dan. I'm changing the _elementName of WorkflowRun to be property instead of entity (this probably...
- 10:54 AM Bug #4020: WRP - create WorkflowRun object to encapsulate provenance/report instances
- I'm currently getting errors parsing the WorkflowRun moml back from disk using momlparser, and am looking into it.
A... - 02:14 PM Bug #4034: "Invalid memory access" when running workflow from the command line
- This bug is no longer occurring on the Mac with either kepler.sh or with 'ant run-workflow.' However, kepler.sh does ...
- 01:50 PM Bug #4034: "Invalid memory access" when running workflow from the command line
- Run the 'ant starupt-script' command to build the kepler.sh file. Not sure if this is still a bug with the new scrip...
- 01:40 PM Bug #4034: "Invalid memory access" when running workflow from the command line
- Does kepler.sh even exist anymore? I am not finding it in any of the modules I have downloaded. I cannot reproduce th...
- 02:04 PM Bug #4153 (In Progress): report-overrides
- "ant report-overrides" build target does not include xml files (such as config.xml or configuration.xml).
- 01:59 PM Bug #4152: Modules should be able to add environment variables to the runtime
- Added the ability to the build system to parse a $module/module-info/environment.txt file. This file lists the envir...
- 01:53 PM Bug #4152: Modules should be able to add environment variables to the runtime
- You can, in fact, add env vars to the runtime. We do it for the PATH variable (for JNI on windows). I'm implementin...
- 01:50 PM Bug #4152: Modules should be able to add environment variables to the runtime
- In Java 1.5 and later the java.lang.System.getEnv() method returns
environment variables.
The Javadoc for getEnv() ... - 01:48 PM Bug #4152: Modules should be able to add environment variables to the runtime
- Right. It is distinct because it actually needs to load an environment variable.
- 01:16 PM Bug #4152: Modules should be able to add environment variables to the runtime
- Just so I understand this correctly, this is a distinct use case from setting System properties, correct? So, if you ...
- 01:09 PM Bug #4152 (Resolved): Modules should be able to add environment variables to the runtime
- Modules such as R sometimes need to add environment variables to the runtime. R needs the R_HOME variable set in ord...
- 01:40 PM Bug #4040: make a new module called globus to host globus actors and needed packages.
- The old actors are being tested with globus environments, new globus actors are also being implemented and tested.
- 01:30 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
- Forgot to close the bug with the last comment.
- 01:30 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
- This functionality is now fully implemented.
- 01:29 PM Bug #4108: Do more extenstive testing before designating a revision of Ptolemy as stable
- I am not sure that more extensive testing is really necessary. There have been very few developer problems associated...
- 01:28 PM Bug #4090: You should be able to specify a particular revision number or date with ant update.
- You can now specify not only a particular revision, but also a particular date as well. This is documented in the bui...
- 01:27 PM Bug #4089: Ensure that module-manager, loader, and the build system all work with a new versioning system for modules.
- All of these systems now work with the new versioning system.
- 01:25 PM Bug #4088: Create new configuration system
- I am working on the configuration system now. It will be done post Sans Park release.
- 01:23 PM Bug #3947: Create a module manager
- The module manager now works adequately for the purposes of the Sans Parks and 2.0 releases. I am closing this bug.
- 12:25 PM Bug #4151: exported RIO and ROML doc run-pairs have same KeplerLSID
- now generating a new LSID when the reportInstance is assembled from provenance data
- 12:05 PM Bug #4151 (Resolved): exported RIO and ROML doc run-pairs have same KeplerLSID
- Exported RIO and ROML doc run-pairs have the same KeplerLSID. Try exporting a run from the WRM and then open up the k...
- 11:41 AM Bug #4087: No reset/x button to clear component searches
- No objections on this proposal, so I plan to do it once many more important tasks are complete.
- 11:39 AM Bug #4150 (Resolved): Save in Library broken
- Save in Library is giving me problems:
[run] Exception occurred during event dispatching:
[run] java.... - 11:32 AM Bug #4047: Remove Component doesn't work
- This is broken again.
[run] java.io.InvalidClassException: org.kepler.kar.KARFile; no valid constructor
[... - 11:22 AM Bug #4149 (Resolved): Workflow Run Manager - Export Runs feature
- WRM needs to be able to Export Runs from a gui context menu, or without a gui by just accepting a list of run lsids. ...
- 11:16 AM Bug #4148: Workflow Run Manager - Upload to Repository feature
- This also needs to be able to work without a gui, hopefully by just requiring a list of keplerlsids of runs to upload.
- 11:14 AM Bug #4148: Workflow Run Manager - Upload to Repository feature
- That should read: "We also need to change to using setAccess".
- 11:10 AM Bug #4148 (Resolved): Workflow Run Manager - Upload to Repository feature
- WRM needs to be able to upload runs to the repository. A user selects rows in the WRM and from a context menu clicks ...
06/11/2009
- 01:29 PM Bug #4147: Error message with selectable text
- Ah, I never noticed you could get the text from the Stack Trace.
- 01:14 PM Bug #4147: Error message with selectable text
- This would likely be an issue with the Ptolemy Query widget in ptolemy.gui.
I tend not to see this because most erro... - 11:38 AM Bug #4147 (Resolved): Error message with selectable text
- When Kepler displays an error message in the pop-up dialog, the text is not selectable so I can copy-paste it into an...
- 10:00 AM Bug #3238: Refactor NMI build
- The NMI build has been refactored and is working. Any suite can now have a build via the NMI task in the build. Clo...
- 09:50 AM Bug #4061: Documentation links are not active
- Fixed. The documentation is now copied into the installer unless copyDocumentation is set to false.
- 08:36 AM Bug #4143: "change failed" error while copy/paste-ing an ImageJ actor
- Fixed checking to see if the parent directory exists before creating
the file. I fixed this in IJMacro, ImageJActor ...
06/10/2009
- 09:15 PM Bug #4143: "change failed" error while copy/paste-ing an ImageJ actor
- I can replicate this under Mac OS X. (thanks for the sample demo, it is a bi
big help)
The stacktrace I get when I p... - 12:53 PM Bug #4065: Copy documentation into installer
- the installer now copies the documentation into the installer. closing this bug.
- 07:32 AM Bug #3951: Report Viewer - improve TOC panel
- now updating the TOC when the report instance in the viewer is updated/refreshed
06/09/2009
- 06:32 PM Bug #4144 (Resolved): Workflow Run Manager - moving columns / new windows bug
- WRM - if you move a column, then open a new kepler window, there are problems with column and headers being out of or...
- 04:22 PM Bug #4143: "change failed" error while copy/paste-ing an ImageJ actor
- Copy/paste the ImageJ actor creates an error.
- 04:21 PM Bug #4143 (Resolved): "change failed" error while copy/paste-ing an ImageJ actor
- This seems to affect only Windows systems and has to do with saved values in the fileOrURL parameter in the ImageJ ac...
- 03:14 PM Bug #2261: DIALOGS: Implement New "Advanced Search for Data" Dialog
- I propose to take over this old bug -- REAP requires an Advanced Search dialog that allows a user to select a region ...
- 01:30 PM Bug #4141: EML 2 Dataset breaks when data table has 2 columns with the same name
- Even with "As Field" and "As Column Vector" we only nd up with a single port for the Stem_pattern column (even though...
- 12:26 PM Bug #4141: EML 2 Dataset breaks when data table has 2 columns with the same name
- This has already been raised for the Kruger datasets. Isn't there already code to append actor names with a number? ...
- 12:15 PM Bug #4141: EML 2 Dataset breaks when data table has 2 columns with the same name
- This makes some sense: EML allows the names to be the same. A RecordToken cannot have two records with the same name....
- 11:56 AM Bug #4141 (Resolved): EML 2 Dataset breaks when data table has 2 columns with the same name
- I am observing this problem with WoodyVCAtreesincirclea.txt in judithk.769.20, although this dataset requires authent...
- 12:32 PM Bug #4132: Workflow Run Manager - Open in New Window is just opening the workflow, not the ROML or report
- We can open the ROML - that'll make sense. Not sure how we would want to "open the report" - right now that UI is bas...
- 12:10 PM Bug #4142: EML 2 Dataset caches restricted datasets, allows access across sessions
- this is known behavior. as you say there is a certain "oh, really?" factor to it. I've marked to revisit at a "LATER"...
- 12:05 PM Bug #4142 (Resolved): EML 2 Dataset caches restricted datasets, allows access across sessions
- I authenticated to search and add an EML 2 Dataset actor for a restricted data table. If I save the workflow, close ...
- 11:59 AM Bug #4119: Report Model - use LSID to link layout to workflow
- will continue to use the WorkflowManager (for sanparks).
Using LSID for the linkage - that's a win! - 11:09 AM Bug #3238: Refactor NMI build
- I've created a new build task 'nmi' to build an NMI configuration for any given suite. It works like this:
You run ... - 11:08 AM Bug #4140 (Resolved): Workflow Run Manager - delete runs functionality needs to be written
- WRM - Delete run(s) functionality needs to be written. Argument: list of lsids
- 10:07 AM Bug #4022: undesired file:\ prefix added by FileParameter
- A Ptolemy model that uses a FileParameter that works for me.
I can't reproduce this bug in Kepler, in part because I...
06/08/2009
- 07:36 PM Bug #4139: port names are displayed twice
- As a clarification, this only seems to occur in the top-level of the workflow in bug 4129 (http://bugzilla.ecoinforma...
- 07:20 PM Bug #4139 (In Progress): port names are displayed twice
- When I choose to show port names, they are displayed once next to the port as expected and once in the upper left cor...
- 06:30 PM Bug #4022: undesired file:\ prefix added by FileParameter
- In Windows, it does prepend a "file:/" before the "C:/", which is slightly different from the OS X and linux behavior...
- 06:05 PM Bug #4022: undesired file:\ prefix added by FileParameter
- I can confirm this with 1.x dev under OS X and linux. It occurs when the file being selected by the chooser is both ...
- 01:50 PM Bug #4129: "unable to parse the metadata: null" with dataset judithk.306.21
- i said i'd look at this...
- 01:10 PM Bug #4138 (New): Workflow Run Manager - search cell edit focus isn't lost appropriately
- WRM - For the most part, if you click on something else in Kepler while editing a WRM search cell, the cell inappropr...
- 01:06 PM Bug #4137 (New): Workflow Run Manager - resizing width of column while in edit mode of search cell does not resize edit field
- WRM - resizing width of column while in edit mode of search cell does not resize edit field. It should, it looks stra...
- 01:02 PM Bug #4136 (Resolved): Workflow Run Manager - date and duration search should allow single operator-less arguments
- WRM - the user should be able to enter a single date or duration without an operator (operators are currently: >, <)....
- 12:56 PM Bug #4135 (Resolved): Workflow Run Manager - default sorting (by date) should be applied
- WRM - by default the runs have no sorting applied.
It would be more intuitive to sort by date by default (probably ... - 12:54 PM Bug #4134 (Resolved): Workflow Run Manager - double clicking on search cell shouldn't sort column
- WRM - double clicking on a search cell column header also causes a sort. This is pretty annoying.
- 12:47 PM Bug #4133 (Resolved): Workflow Run Manager - column widths should be size appropriately
- WRM column widths should be sized more appropriately by default, e.g. giving the date and duration columns enough roo...
- 12:44 PM Bug #4132 (New): Workflow Run Manager - Open in New Window is just opening the workflow, not the ROML or report
- Open in New Window should open not just the workflow, but the roml and report (anything else?).
- 12:43 PM Bug #4131 (New): Workflow Run Manager - Open in New Window allows opening same wf multiple times
- You can currently Open in New Window the same workflow from the WRM multiple times (i.e. into new Kepler windows). Th...
- 12:39 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
- Change referred to in #20 have been checked in.
This bug's become huge, going to create separate bugs that block this... - 11:39 AM Bug #3635: Create ReportItem Type Hierarchy
- I think it will be very useful to make StaticReportItem subclasses - if only to make rendering them in the UI more st...
- 11:34 AM Bug #3998: Report Viewer - render Report Instance on???Event
- when the view changes, an event is fired and the viewer is now listening/responding that that event.
- 11:33 AM Bug #3647: Create Report Assembler
- the assembler is in place.
it's up to the various Item subclasses to get their values when needed. - 11:29 AM Bug #4020: WRP - create WorkflowRun object to encapsulate provenance/report instances
- We're now using a WorkflowRun object (subclass of NamedObj) to store the run provenance metadata. This moml snippet i...
- 11:26 AM Bug #4001: WRP - Save/Open KARs containing MOMLs and ROMLs
- created ReportLayoutKAREntryHandler for writing ROML to the KAR when it's associated workflow is saved as a KAR.
simi...
06/05/2009
- 05:00 PM Bug #4129: "unable to parse the metadata: null" with dataset judithk.306.21
- Referenced workflow, zipped
- 04:59 PM Bug #4129 (Resolved): "unable to parse the metadata: null" with dataset judithk.306.21
- This error occurs on XP but does not occur on linux. It only occurs if the dataset has not been previously cached. ...
- 02:33 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
- Locally I've created a WorkflowRunManager class and associated Event and EventListener classes. With these I have the...
06/04/2009
- 04:50 PM Bug #4086: Port-Parameters half-work with composite actors
- PortParameters work with opaque composite actors (composite actors
that have directors), but not transparent composit...
06/03/2009
- 03:39 PM Bug #3637: Report Design Features, Stage 1
- The following design features have been completed:
Ability to add:
Titles
Subtitles
Sections
Legends (will be accommo... - 03:37 PM Bug #3734: Some demos no longer work after new build/repos
- moved the smaller test garp workflows into a test-workflow subdir of ENM. This separates out the main ENM workflows ...
- 02:49 PM Bug #3734: Some demos no longer work after new build/repos
- Checked and fixed all workflows in outreach/resources/demos. Some in the demos/ENM directory do not work, but failur...
- 02:24 PM Bug #3734: Some demos no longer work after new build/repos
- checked and fixed all of the demos in outreach/resources/demos/getting-started
- 03:31 PM Bug #3644: Create report layout controller
- We did not end up creating a formal 'controller' for the layout, but we did create a method for rendering report layo...
- 03:29 PM Bug #4128 (Resolved): Improve reporting static item icons
- Make static item icons that are appealing and visually consistent, current icons were just initial 'placeholders' for...
- 12:18 PM Bug #3668: Define contents of "Publication Ready Archive"
- In a recent meeting with Matt and Ben, we discussed a proposal for a redefinition of KAR that would be able to contai...
- 08:29 AM Bug #4126 (Resolved): Allow user CLASSPATH to be loaded in Kepler
- I have a jython actor that uses a java class I have in a jar file. Kepler fails when loading that actor via a kar fil...
06/02/2009
- 04:44 PM Bug #4125: ReportTest does not compile
- I had added some additional classes to this test, but decided not to use them for now. This is what was causing the ...
- 12:21 PM Bug #4125 (Resolved): ReportTest does not compile
- I get the following when I try to run the reporting module:
[compile] Compiling 60 source files to /Users/sean/Dev... - 03:47 PM Bug #4064: remove r installer after installation is complete
- decided against doing this. There is no good place to do it in the install.xml file since the R installer is already...
- 03:31 PM Bug #3949: Get the installer working with the new build system
- Re-opening. forgot so many bugs blocked this one.
- 03:29 PM Bug #3949: Get the installer working with the new build system
- The installer creation task has been working well for while. Closing this bug. If any other issues pop up, new bugs...
- 03:26 PM Bug #3238: Refactor NMI build
- JUnit tests now work but they still run in the 'build' stage instead of the 'test' stage. I don't think this is a bi...
- 03:22 PM Bug #3238: Refactor NMI build
- In the process of getting the NMI build working for the kepler suite. I'm also getting it to build the installers an...
- 03:21 PM Bug #4111: move test data to a more appropriate locations
- removed all references to testdata in the demos and replaced it with the new path. closing this bug.
- 03:08 PM Bug #4105: Make build system automatically build OS dependent modules
- This now works. Adding an osextensions.txt file with the class names and java OS identifier of the OS they are suppo...
- 12:31 PM Bug #4123: Image reader can't read URL
- Fixed!
ImageReader is a very old actor, written in 2001.
The fileOrURL parameter was changed to a FileParameter in 20... - 10:10 AM Bug #4123: Image reader can't read URL
- I meant "ImageReader" instead of "FileReader" in my comment
- 10:08 AM Bug #4123: Image reader can't read URL
- I just noticed URLToImage is similar to what I want. I guess my confusion was that the parameter in FileReader is fil...
- 10:01 AM Bug #4123 (Resolved): Image reader can't read URL
- In ptolemy.actor.lib.image.ImageReader
replace
_image = new ImageIcon(_fileRoot).getImage();
with:
try {
_im... - 11:56 AM Bug #4124: ant package fails
- Confirmed fixed.
- 11:33 AM Bug #4124: ant package fails
- This has probably been fixed. I am going to test and then close the bug.
- 11:23 AM Bug #4124 (Resolved): ant package fails
- BUILD FAILED
.../build-area/build.xml:75: Warning: Could not find file .../build-area/ant-tasks/target/kepler-tasks.... - 10:11 AM Bug #4121: Queryable - use LSID to look up workflows
- I've added getLastExecutionForWorkflow(KeplerLSID) and getEntityId(String, LSID).
Feel free to re-open this bug if y... - 09:58 AM Bug #4122 (Resolved): File -> Save As does not assign new LSID
- After saving a workflow to a different file name, both workflows have the same LSID.
06/01/2009
- 07:11 PM Bug #3898: update .kepler instead of removing it between versions
- Chad, David, and I had a discussion today about how to handle the .kepler directory for the 2.0 release. The conclus...
- 05:26 PM Bug #4107: Report Designer - Deserialize a ROML and display it back in the Report Layout Designer GUI
- We can now read in a ROML and display it in the GUI.
- 11:24 AM Bug #4120: Bug in OpenDBConnector actor
- I've updated OpenDBConnection to use the new string.
- 01:03 AM Bug #4120 (Resolved): Bug in OpenDBConnector actor
- It also appears that the OpenDBConnector needs to be updated too. The previous version of the driver class required ...
- 10:54 AM Bug #4121 (Resolved): Queryable - use LSID to look up workflows
- Now that we are using LSIDs to identify workflows, can the Queryable implementations also use that? Currently they pe...
- 10:51 AM Bug #4119: Report Model - use LSID to link layout to workflow
- making progress using ObjectManager to keep track of workflows and layouts. still using Workflow and WorkflowManager ...
05/30/2009
- 03:28 PM Bug #4119 (Resolved): Report Model - use LSID to link layout to workflow
- Now that he have a Kar Entry Handler for ROML, we need to use the cache+lsid for storing and retrieving that layout f...
05/29/2009
- 09:42 AM Bug #4118: Web Service Actor stored in Library
- Are you using Kepler from SVN? I think I've already fixed this bug in WebService.
(http://bugzilla.ecoinformatics.org... - 09:28 AM Bug #4118: Web Service Actor stored in Library
- This line should be uncommented to make this work:
> //if(_urlStr.length()>0)
- 09:26 AM Bug #4118 (Resolved): Web Service Actor stored in Library
- After setting the wsdl and service name in org.sdm.spa.WebService and org.sdm.spa.WSWithComplexTypes, I store them ba...
05/28/2009
- 06:10 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
- How about:
ant update -Drev=head
Updates everything, including ptolemy, to the head? - 05:55 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
- Thanks for adding the message, that will help.
I think if we had "ant update-head", then I'd be happy. The other co... - 05:47 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
- Oh, I should add that per your suggestion, I have added an informative message when you are updating ptolemy:
Updati... - 05:44 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
- Hi Christopher,
Good comments.
Actually, the command ant use-ptolemy-head and ant use-stable-ptolemy have been both... - 05:24 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
- Actually, maybe "ant update-head" could replace "ant use-ptolemy-head"?
I'll never remember "ant use-ptolemy-head". ... - 05:04 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
- So every time I run "ant update", I need to also run "ant use-ptolemy-head".
The README.txt and web pages should be u... - 12:31 PM Bug #4111: move test data to a more appropriate locations
- I changed kepler so that it will try to automatically open to the outreach/resources/demos directory. If it does not...
- 12:28 PM Bug #4111: move test data to a more appropriate locations
- To add the outreach module (or any module for that matter) to your suite temporarily, you can use the -Dunder switch ...
- 12:23 PM Bug #4111: move test data to a more appropriate locations
- I moved the testdata and the demos to the outreach module. I'm looking into ways to add the ability to the build sys...
05/27/2009
- 05:30 PM Bug #4113 (New): Kepler changes property position in XML but keeps values
- This doesn't affect the operation of Kepler, but it makes it a major pain to diff workflows and causes large portions...
- 04:13 PM Bug #4112 (New): make kepler use OSX dialog boxes
- Add configuration to the mac extensions to make kepler use the OSX file open/save dialog boxes instead of the default...
- 02:47 PM Bug #4111 (Resolved): move test data to a more appropriate locations
- Currently, there is ~54 MB of test data in common/lib/testdata. This could be moved to a new module that would be op...
- 02:25 PM Bug #4105: Make build system automatically build OS dependent modules
- The OS is just a special case of checking for a particular feature
such as a third party library. The build system s... - 02:23 PM Bug #4104: Need resource manager to handle objects in the resources directories
- Please be sure to review how the Java I18N stuff works.
See
http://java.sun.com/developer/technicalArticles/Intl/Res... - 11:11 AM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
- Ok, good news that I can build against the ptII head.
The word "update" in "ant update" means something specific, wh...
05/26/2009
- 11:10 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
- Hi Christopher,
That was my bad. I forgot to include the names of the new commands in my comment closing the issue.
... - 06:42 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
- I'm confused.
How do I build from the Ptolemy head?
It seem like "ant update" should actually update the tree to t... - 10:46 AM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
- I agree with you that the word "stable" is better than "blessed" and that is the the word used in one of several new ...
- 07:40 AM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
- We should use the term "stable" to refer to revisions of Ptolemy and Kepler
that are likely to build for users. A tr... - 03:49 PM Bug #4093: allow kepler to use OS specific UI elements
- fixed. osx kepler now has a new icon set that fit the standard osx icon sizes. please open new bugs for any new Mac ...
- 10:31 AM Bug #4093: allow kepler to use OS specific UI elements
- fixed the about box. fixed apple-q. The icon shown is now the java icon. Will try to get the kepler icon to work.
- 03:47 PM Bug #4067: Add "about" widget for kepler on the mac
- Fixed. The mac version of kepler now has an about box, it correctly exits when using apple-q and it has a new icon s...
- 03:44 PM Bug #4109: File Reader error message incorrect
- fixed it. update ptolemy to see the change.
- 02:51 PM Bug #4109 (Resolved): File Reader error message incorrect
- The "File Reader" actor (ptolemy.actor.lib.io.FileReader) prints a message
"Failed to write '" + fileOrURL + "'"
... - 12:53 PM Bug #4104: Need resource manager to handle objects in the resources directories
- Interesting ideas!
I want to point out a couple of things. First of all, we already have most of this functionality.... - 10:53 AM Bug #4090: You should be able to specify a particular revision number or date with ant update.
- As of now, you may specify a revision number with the ant update command. For more recent revisions, specifying a rev...
- 07:22 AM Bug #4090: You should be able to specify a particular revision number or date with ant update.
- It would be very useful to be able to specify the revision as a date
or a revision number. Checking out by date migh... - 10:49 AM Bug #4108 (In Progress): Do more extenstive testing before designating a revision of Ptolemy as stable
- Right now, before a revision of Ptolemy is considered "stable" all it must do is be able to compile and the trunk of ...
- 10:26 AM Bug #4107 (Resolved): Report Designer - Deserialize a ROML and display it back in the Report Layout Designer GUI
- We need to be able to deserialize a ROML and display it in the Layout Designer GUI.
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