Kepler

05/30/2009

03:28 PM Bug #4119 (Resolved): Report Model - use LSID to link layout to workflow

Now that he have a Kar Entry Handler for ROML, we need to use the cache+lsid for storing and retrieving that layout f... ben leinfelder

05/29/2009

09:42 AM Bug #4118: Web Service Actor stored in Library

Are you using Kepler from SVN? I think I've already fixed this bug in WebService.
(http://bugzilla.ecoinformatics.org... Daniel Crawl

09:28 AM Bug #4118: Web Service Actor stored in Library

This line should be uncommented to make this work:
> //if(_urlStr.length()>0)
Chris Weed

09:26 AM Bug #4118 (Resolved): Web Service Actor stored in Library

After setting the wsdl and service name in org.sdm.spa.WebService and org.sdm.spa.WSWithComplexTypes, I store them ba... Chris Weed

05/28/2009

06:10 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.

How about:
ant update -Drev=head
Updates everything, including ptolemy, to the head? David Welker

05:55 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.

Thanks for adding the message, that will help.
I think if we had "ant update-head", then I'd be happy. The other co... Christopher Brooks

05:47 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.

Oh, I should add that per your suggestion, I have added an informative message when you are updating ptolemy:
Updati... David Welker

05:44 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.

Hi Christopher,
Good comments.
Actually, the command ant use-ptolemy-head and ant use-stable-ptolemy have been both... David Welker

05:24 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.

Actually, maybe "ant update-head" could replace "ant use-ptolemy-head"?
I'll never remember "ant use-ptolemy-head". ... Christopher Brooks

05:04 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.

So every time I run "ant update", I need to also run "ant use-ptolemy-head".
The README.txt and web pages should be u... Christopher Brooks

12:31 PM Bug #4111: move test data to a more appropriate locations

I changed kepler so that it will try to automatically open to the outreach/resources/demos directory. If it does not... Chad Berkley

12:28 PM Bug #4111: move test data to a more appropriate locations

To add the outreach module (or any module for that matter) to your suite temporarily, you can use the -Dunder switch ... Chad Berkley

12:23 PM Bug #4111: move test data to a more appropriate locations

I moved the testdata and the demos to the outreach module. I'm looking into ways to add the ability to the build sys... Chad Berkley

05/27/2009

05:30 PM Bug #4113 (New): Kepler changes property position in XML but keeps values

This doesn't affect the operation of Kepler, but it makes it a major pain to diff workflows and causes large portions... Oliver Soong

04:13 PM Bug #4112 (New): make kepler use OSX dialog boxes

Add configuration to the mac extensions to make kepler use the OSX file open/save dialog boxes instead of the default... Chad Berkley

02:47 PM Bug #4111 (Resolved): move test data to a more appropriate locations

Currently, there is ~54 MB of test data in common/lib/testdata. This could be moved to a new module that would be op... Chad Berkley

02:25 PM Bug #4105: Make build system automatically build OS dependent modules

The OS is just a special case of checking for a particular feature
such as a third party library. The build system s... Christopher Brooks

02:23 PM Bug #4104: Need resource manager to handle objects in the resources directories

Please be sure to review how the Java I18N stuff works.
See
http://java.sun.com/developer/technicalArticles/Intl/Res... Christopher Brooks

11:11 AM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.

Ok, good news that I can build against the ptII head.
The word "update" in "ant update" means something specific, wh... Christopher Brooks

05/26/2009

11:10 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.

Hi Christopher,
That was my bad. I forgot to include the names of the new commands in my comment closing the issue.
... David Welker

06:42 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.

I'm confused.
How do I build from the Ptolemy head?
It seem like "ant update" should actually update the tree to t... Christopher Brooks

10:46 AM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.

I agree with you that the word "stable" is better than "blessed" and that is the the word used in one of several new ... David Welker

07:40 AM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.

We should use the term "stable" to refer to revisions of Ptolemy and Kepler
that are likely to build for users. A tr... Christopher Brooks

03:49 PM Bug #4093: allow kepler to use OS specific UI elements

fixed. osx kepler now has a new icon set that fit the standard osx icon sizes. please open new bugs for any new Mac ... Chad Berkley

10:31 AM Bug #4093: allow kepler to use OS specific UI elements

fixed the about box. fixed apple-q. The icon shown is now the java icon. Will try to get the kepler icon to work. Chad Berkley

03:47 PM Bug #4067: Add "about" widget for kepler on the mac

Fixed. The mac version of kepler now has an about box, it correctly exits when using apple-q and it has a new icon s... Chad Berkley

03:44 PM Bug #4109: File Reader error message incorrect

fixed it. update ptolemy to see the change. Chad Berkley

02:51 PM Bug #4109 (Resolved): File Reader error message incorrect

The "File Reader" actor (ptolemy.actor.lib.io.FileReader) prints a message
"Failed to write '" + fileOrURL + "'"
... Chris Weed

12:53 PM Bug #4104: Need resource manager to handle objects in the resources directories

Interesting ideas!
I want to point out a couple of things. First of all, we already have most of this functionality.... David Welker

10:53 AM Bug #4090: You should be able to specify a particular revision number or date with ant update.

As of now, you may specify a revision number with the ant update command. For more recent revisions, specifying a rev... David Welker

07:22 AM Bug #4090: You should be able to specify a particular revision number or date with ant update.

It would be very useful to be able to specify the revision as a date
or a revision number. Checking out by date migh... Christopher Brooks

10:49 AM Bug #4108 (In Progress): Do more extenstive testing before designating a revision of Ptolemy as stable

Right now, before a revision of Ptolemy is considered "stable" all it must do is be able to compile and the trunk of ... David Welker

10:26 AM Bug #4107 (Resolved): Report Designer - Deserialize a ROML and display it back in the Report Layout Designer GUI

We need to be able to deserialize a ROML and display it in the Layout Designer GUI. debi staggs

05/22/2009

01:25 PM Bug #4104: Need resource manager to handle objects in the resources directories

In general I think this is a good idea. But, I could also envision having a number of general search paths for resou... Matt Jones

12:20 PM Bug #4104 (New): Need resource manager to handle objects in the resources directories

This class should have static methods for accessing items in the modules' resources directory. This would allow reso... Chad Berkley

12:25 PM Bug #4105 (Resolved): Make build system automatically build OS dependent modules

There should be a way to tell the build system to automatically build (or not build) modules that are OS dependent so... Chad Berkley

10:24 AM Bug #3764: Kepler needs to support EML 2.1.0

There's no way to add EML 2.1.0 support to Kepler 1.0.0.
We will have a "release" of some sort for the TPC training i... ben leinfelder

05/21/2009

04:37 PM Bug #4103 (Resolved): Add the capability of creating SECTIONS in the report.

Give the user the ability to group things together in sections in a report. A section should also provide an (option... debi staggs

04:34 PM Bug #4102 (Resolved): Add the ability to insert a static image into the report.

Add the ability to insert a static image into the report. debi staggs

04:25 PM Bug #4101 (Resolved): Report Designer - Create a manager class for the Static Report Items

Currently there is a small list of static report items that we are using in the reporting module, so these items are ... debi staggs

01:20 PM Bug #4092: record all files referred to in array tokens

fixed in r18455. Derik Barseghian

05:53 AM Bug #4097: here are some new svg icons for actors

New icons: bar chart; scatter plot; pie chart; calculator; filter Paul Allen

05:48 AM Bug #4097 (New): here are some new svg icons for actors

We had occasion to need better icons for some of the standard actors. You might want them as well. I will add them as... Paul Allen

05/20/2009

06:53 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives

priorities:
- use and show kepler-lsid
- work with aaron, dan, et al to determine what goes in pub ready archive.
- a... Derik Barseghian

04:35 PM Bug #4095 (New): Java Package Ontology (e.g. to facilitate Ptolemy component access)

Ptolemy has a number of neat components that are currently very hard to get to.
For example, MonitorReceiverContent... Bertram Ludaescher

04:30 PM Bug #4094 (Resolved): new Unnamed windows should have a suffix that increments

This would help to differentiate windows. Right now each new window has the same name: Unnamed. Derik Barseghian

03:59 PM Bug #3958: REPORT DESIGNER - Delete report items from the report designer

Report items can now be deleted from the report designer canvas, and, of course, the report. : ) debi staggs

03:39 PM Bug #4093 (Resolved): allow kepler to use OS specific UI elements

I've implemented an extension point in kepler to allow us to build OS specific UI tweaks into kepler without breaking... Chad Berkley

02:52 PM Bug #4092 (Resolved): record all files referred to in array tokens

We currently only recording a file if it's in a string token. Ben requests: check all tokens in array tokens to see i... Derik Barseghian

02:44 PM Bug #4091 (Resolved): Make it so the build system can use a "blessed" version of Ptolemy.

gatekeeping mechanism where by we use a "blessed" version of Ptolemy that is very close to the trunk, but not necessa... David Welker

02:40 PM Bug #4090 (Resolved): You should be able to specify a particular revision number or date with ant update.

The ant update command should optionally allow you to specify a revision:
ant update -Drev=12345
All the module... David Welker

02:34 PM Bug #4089 (Resolved): Ensure that module-manager, loader, and the build system all work with a new versioning system for modules.

The new versioning system must be implemented and tested so that the module-manager, loader, and build system can wor... David Welker

02:32 PM Bug #4088 (Resolved): Create new configuration system

Per our at the Kepler developer's meeting, we need to develop a unified configuration system starting with a prototype. David Welker

02:05 PM Bug #4049: Import actor that already exists appends strange numbering scheme

Re: comment#4, for example, if an actor RExpressionRain2001 is created and saved in the library, when dragged to canv... Derik Barseghian

11:10 AM Bug #4049: Import actor that already exists appends strange numbering scheme

Soong notes that when dragging an actor with name ending in a digit(s) to canvas, the digits are dropped. Derik Barseghian

11:28 AM Bug #4087: No reset/x button to clear component searches

Making the Cancel button useful when a search is not in progress, to do a reset, seems like a good idea to me. If we ... Derik Barseghian

10:52 AM Bug #4087 (New): No reset/x button to clear component searches

Under both linux and Windows, there is currently no way to clear the results of a search on the components tab. Ther... Oliver Soong

11:08 AM Bug #3764: Kepler needs to support EML 2.1.0

Kepler 1.0.0 doesn't support EML 2.1.0. I know we're moving towards a new release, but since the Kruger stuff is sti... Oliver Soong

10:31 AM Bug #4086 (Resolved): Port-Parameters half-work with composite actors

Under the SDF Director, I can create a Composite Actor containing a Port-Parameter and a Display actor. There are 4 ... Oliver Soong

09:06 AM Bug #4062: Web Services and Data Transformation demo throws a StringOutOfBounds

Fixed: looks like the actor relied on its parameters to be set in a specific order. Daniel Crawl

05/19/2009

11:22 PM Bug #1750: Allow KAR files to include jar/class files

KAR files used to contain class files, and wer eboth a successful and necessary part of Kepler 1.0. I am reopening t... Matt Jones

08:52 PM Bug #1750: Allow KAR files to include jar/class files

KAR files will not contain class files or JAR files. Classes and jars will be contained within Kepler modules. KAR ... Aaron Aaron

09:22 PM Bug #3939: Kepler Unique LSID Namespace generation

Documentation for the KeplerLSID system will be maintained here:
https://kepler-project.org/developers/teams/framewo... Aaron Aaron

05:57 PM Bug #3691: JButton labels truncated on macOSX

Refresh button fixed. Closing. For some reason had to comment out setMaximumSize, even though SearchUIJPanel uses the... Derik Barseghian

05:01 PM Bug #4069: Metacat Authenticated Query fails for specific user/group/dataset combinations

Oh, well there's also a problem with the table Woody_Vca_Sites.txt. The preview window wasn't working right probably... Oliver Soong

04:24 PM Bug #4069: Metacat Authenticated Query fails for specific user/group/dataset combinations

it's not necessarily the Preview function per se - more that I can see many many errors about numeric format exceptio... ben leinfelder

12:18 PM Bug #4069: Metacat Authenticated Query fails for specific user/group/dataset combinations

Can you clarify the problems you're having with the Preview option? I know in some of the tables there are unusual c... Oliver Soong

11:25 AM Bug #4069: Metacat Authenticated Query fails for specific user/group/dataset combinations

if you update from the development trunk, you should now have three different document types available for the KNB Au... ben leinfelder

03:11 PM Bug #4067: Add "about" widget for kepler on the mac

Thanks for the info, Matt. The icon is currently set in the plist file, and it shows up fine in the Finder, but not ... Chad Berkley

10:59 AM Bug #4067: Add "about" widget for kepler on the mac

Handling the About menu is possible and described in the Java Development Guide for Mac OS X:
http://developer.apple.... Matt Jones

10:43 AM Bug #4067: Add "about" widget for kepler on the mac

It would also be nice to figure out how to make the kepler icon show up in the apple-tab list instead of a generic "e... Chad Berkley

10:40 AM Bug #4067: Add "about" widget for kepler on the mac

Possibly need to change a key/value in the Info.plist file, but that won't work for ant runs, only when Kepler is exe... Chad Berkley

10:38 AM Bug #4067: Add "about" widget for kepler on the mac

Found this:
http://developer.apple.com/documentation/Java/Reference/Java_PropertiesRef/Articles/JavaSystemProperties.... Chad Berkley

02:24 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives

'Open Workflows in New Windows' context menu now works. I cobbled this together though, and need to clean it up and m... Derik Barseghian

11:23 AM Bug #3673: Create model for the Report Instance (RIO)

The model for the Report Instance (RIO) has been created. debi staggs

11:19 AM Bug #3636: Support multiple Report formats

We support the report formats as follows: .pdf and .html debi staggs

11:19 AM Bug #3764: Kepler needs to support EML 2.1.0

let's reopen if there are other problems that crop up. I think the dataTable parsing is pretty much the same from eml... ben leinfelder

10:41 AM Bug #3764: Kepler needs to support EML 2.1.0

In the Kepler Registry: updated the Query Service and Authenticated Query Service entries to include EML 2.1 doctypes ben leinfelder

10:23 AM Bug #3764: Kepler needs to support EML 2.1.0

I've added a metadata specification class to the util module (like eml 2.0.0 and eml 2.0.1 have).
Also allowed both "... ben leinfelder

11:18 AM Bug #3608: Create initial class diagrams for the reporting feature.

Class diagrams for reporting have been created. debi staggs

11:17 AM Bug #3640: Identify items of interest in workflow.

The user can flag items of interest by right clicking on a port in the workflow and using the context menu to add it ... debi staggs

11:16 AM Bug #3667: Mock-up Report Designer UI

The report designer mock up was made and the design implemented and refined. debi staggs

11:15 AM Bug #3666: Create RIO schema

The RIO Schema has been created. debi staggs

11:14 AM Bug #3646: Create ROML Schema

The ROML schema has been created. debi staggs

11:13 AM Bug #3641: Create model for ItemOfInterest

The class 'Item' was created, and this is used to build a list of 'items'. This list has references to ports that ap... debi staggs

11:09 AM Bug #3607: Create model for the Report Object

The object models for the report object (ROML) and the Report Instance (RIO)
have both been created. debi staggs

11:07 AM Bug #3642: Create model for ReportItem

The model for the report items has been created and is working well. debi staggs

11:06 AM Bug #3645: Create report layout designer

Report Layout Designer has been created, and is working. debi staggs

11:04 AM Bug #3934: Report Designer - editable Report Title field

We are now able to edit the title of the report, and it is added to the report model. debi staggs

11:03 AM Bug #3955: Report Designer - static report item: TEXT

The ability to edit the text in a 'Label' static report item has been implemented. debi staggs

11:02 AM Bug #3955: Report Designer - static report item: TEXT

The ability to edit the text in a 'Label' static report item has been implemented. debi staggs

10:59 AM Bug #3959: Report Designer - Highlight and select a report item panel

The ability to highlight and select a report item panel is now working. Panels are selected when the user clicks on ... debi staggs

07:54 AM Bug #4038: The first time ant change-to is run, it prints a stack trace

This is fixed, I can no longer reproduce it. Christopher Brooks

07:48 AM Bug #4053: deleting open composite actor may delete model

This is fixed by changes to PtolemyFrame. Christopher Brooks

05/18/2009

02:48 PM Bug #4069: Metacat Authenticated Query fails for specific user/group/dataset combinations

this is now an EML 2.1.0 document. Kepler does not yet have support for 2.1.0.
Will look into that - there is a bug f... ben leinfelder

11:07 AM Bug #4051: R - include R distribution in separate module

R is now in it's own module and the installer can install it separately. Chad Berkley

09:49 AM Bug #4082 (Resolved): New user guide section on modules/module manager

Need to write a new section of documentation on modules and the module manager. Other sections need to be able to re... Chad Berkley

09:48 AM Bug #4081 (Resolved): Rework Appendix B

Rework Appendix B of the User Manual for the 2.0
release. Chad Berkley

09:47 AM Bug #4080 (Resolved): Rework Section 11

Rework Section 11 of the User Manual for the 2.0
release. Chad Berkley

09:46 AM Bug #4079 (Resolved): Rework Section 10

Rework Section 10 of the User Manual for the 2.0
release. Chad Berkley

09:45 AM Bug #4078 (Resolved): Rework Section 9

Rework Section 9 of the User Manual for the 2.0
release. Chad Berkley

09:44 AM Bug #4077 (Resolved): Rework Section 8

Rework Section 8 of the User Manual for the 2.0
release. Chad Berkley

09:44 AM Bug #4076 (Resolved): Rework Section 7

Rework Section 7 of the User Manual for the 2.0
release. Chad Berkley

09:43 AM Bug #4075 (Resolved): Rework Section 6

Rework Section 6 of the User Manual for the 2.0
release. Chad Berkley

09:42 AM Bug #4074 (Resolved): Rework Section 5

Rework Section 5 of the User Manual for the 2.0
release. Chad Berkley

09:42 AM Bug #4073 (Resolved): Rework Section 4

Rework Section 4 of the User Manual for the 2.0 release. Chad Berkley

09:41 AM Bug #4072 (Resolved): Rework Section 3

Rework Section 3 for the 2.0 release. Chad Berkley

09:40 AM Bug #4071 (Resolved): Rework Section 2

Rework Section 2 of the User Manual for the 2.0 release. Chad Berkley

09:37 AM Bug #4070 (Resolved): Rework Section 1 and the GSG

Rework Section 1 of the User Manual and the Getting Started Guide for the 2.0 release. Chad Berkley

09:27 AM Bug #3976: Update Documentation for 2.0 release

Thanks for volunteering, Jianwu. You've asked a good question, one that I hadn't thought of. I think we just need t... Chad Berkley

09:25 AM Bug #4008: EML 2 Dataset throws errors when accessing public data from mixed public/private datasets

i'm now getting stuck on the initializing step of the workflow... (osx) ben leinfelder

09:08 AM Bug #4068: File Menu should display 5 most recently used workflows

Hi Ben:
Yes, you're right: remembering the last used directory (even if only within a session) is convenient!
If w... Bertram Ludaescher

08:43 AM Bug #4068: File Menu should display 5 most recently used workflows

Last I knew, the "last used directory" was remembered (unless you restart Kepler). It's very convenient [for me]. ben leinfelder

05/15/2009

04:05 PM Bug #3976: Update Documentation for 2.0 release

I will take care of <Section 7: Using remote computing resources>. One quick question: if we moved some actors (such ... jianwu jianwu

03:15 PM Bug #3976: Update Documentation for 2.0 release

I finished going through all of the documentation in kepler-docs/outreach/documentation/working. I've made changes w... Chad Berkley

01:20 PM Bug #4069: Metacat Authenticated Query fails for specific user/group/dataset combinations

(In reply to comment #0)
> Regetz confirmed this, but he was able
> to search for a private dataset of his own.
The ... Jim Regetz

12:02 PM Bug #4069 (Resolved): Metacat Authenticated Query fails for specific user/group/dataset combinations

The problem affects several datasets with similar access permissions, such as judithk.769.12.
These datasets are n... Oliver Soong

05/14/2009

05:30 PM Bug #4062: Web Services and Data Transformation demo throws a StringOutOfBounds

This error is from the web service actor. I'll look into it. Daniel Crawl

04:58 PM Bug #4013: Make sure duplicate jars are not included in the installer

I wrote a build task to identify all duplicate jar files within the current suite. I identified many jar files that ... Chad Berkley

03:53 PM Bug #4068 (Resolved): File Menu should display 5 most recently used workflows

The 'File' menu in Kepler does not show the most recently opened workflows.
It would be important to have a "Recent ... Bertram Ludaescher

03:43 PM Bug #4067 (Resolved): Add "about" widget for kepler on the mac

after I changed kepler so it uses the native osx menu bar, there is now an "about kepler" menu item that uses a defau... Chad Berkley

02:15 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives

Filter button has been eliminated and table is populated by default, bringing WRM more in line with the mockups. 'Fil... Derik Barseghian

12:23 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives

Sorting has been fixed. Derik Barseghian

05/13/2009

05:54 PM Bug #4066: Allow legacy LSIDs to be parsed, but not serialized

I've added a kludge to the KeplerLSID class that accepts urn:lsid:<authority>:<namespace>.<object>.<revision>#<anchor... Aaron Aaron

04:44 PM Bug #4066: Allow legacy LSIDs to be parsed, but not serialized

Example XML snippet was from a kruger TPC workflow that had an ImageJ actor (probably from a while back) in the workf... ben leinfelder

04:43 PM Bug #4066 (Resolved): Allow legacy LSIDs to be parsed, but not serialized

After shifting to a non-IBM implementation of LSIDs, a few workflows were encountered that had actors using dots (.) ... ben leinfelder

04:11 PM Bug #4013: Make sure duplicate jars are not included in the installer

Perhaps better yet, use a checksumming algorithm to check for duplicates. Something like:

find . -name "*.jar" |... Shaun Walbridge

11:26 AM Bug #4013: Make sure duplicate jars are not included in the installer

This is probably an underestimate of the duplicates because I'll bet that some of the jar files that are in only once... Matt Jones

10:38 AM Bug #4013: Make sure duplicate jars are not included in the installer

Duplicate jar list from Christopher:
bash-3.2$ find . -name "*.jar" -print | awk -F / '{print $NF}' | sort | uniq -c... Chad Berkley

12:47 PM Bug #4063: Kepler-1.XDev Installer is large

For archival reasons, I think it is very important to release a
source only tar.gz file of Kepler-2.0. The reason is... Christopher Brooks

10:37 AM Bug #4063: Kepler-1.XDev Installer is large

The duplicate jar problem is in bug 4013. Thanks for getting a list though. I'll copy it over to that bug.
The rea... Chad Berkley

08:37 AM Bug #4063 (Resolved): Kepler-1.XDev Installer is large

The Kepler-1.XDev installers are very large:
[ ] kepler-1.xDev-osx.jar 12-May-2009 14:32 212M
[ ] kepler-1... Christopher Brooks

11:59 AM Bug #4060: Copyrights need to be updated to 2009

Updated the copyright.htm file as well as all of the source code that I could find a copyright statement in. Chad Berkley

11:10 AM Bug #4065 (Resolved): Copy documentation into installer

Make sure the installer includes the documentation from kepler-docs and that the links in the help menu work. Chad Berkley

10:32 AM Bug #4064 (Resolved): remove r installer after installation is complete

delete the file r/module-info/R-2.9.0* after installation of kepler and R is complete to save disc space. Chad Berkley

05/12/2009

07:20 PM Bug #4061: Documentation links are not active

The previous build simply knew where to copy these from -- the pdf files needed are in kepler-docs. We should just a... Matt Jones

06:51 PM Bug #4061 (Resolved): Documentation links are not active

In the splash screen, none of the documentation links are active.
Help -> About -> Documentation
Brings up do... Christopher Brooks

06:54 PM Bug #4062 (Resolved): Web Services and Data Transformation demo throws a StringOutOfBounds

Web Services and Data Transformation demo brings up an exception:
Java.lang.StringIndexOutOfBoundsException: Strin... Christopher Brooks

06:45 PM Bug #4060 (Resolved): Copyrights need to be updated to 2009

The copyrights need to be updated to 2009.
There are some scripts in ptII/adm/copyright.
In particular, ptolemy/c... Christopher Brooks

01:54 PM Bug #3893: EML 2 Dataset not working with local data

re-open:
dataFile is not being reloaded when attribute changes. ben leinfelder

11:02 AM Bug #3893: EML 2 Dataset not working with local data

retargeted for bookkeeping purposes ben leinfelder

11:01 AM Bug #3893: EML 2 Dataset not working with local data

using absolute URL for the local data file even when in the same directory ben leinfelder

01:16 PM Bug #4008: EML 2 Dataset throws errors when accessing public data from mixed public/private datasets

Well, it's more than just annoying error messages. The trunk workflow doesn't work at all for me. On XP, one actor ... Oliver Soong

11:04 AM Bug #3890: EML 2 Dataset has trouble with a certain data table

works for me now. can reopen if turns out the fix was not fully adequate. ben leinfelder

10:26 AM Bug #3890: EML 2 Dataset has trouble with a certain data table

retargeting to 2.0 - want to have this resolved by then (configuration) ben leinfelder

11:02 AM Bug #3892: EML 2 Dataset file path confusion

using absolute URL now ben leinfelder

05/11/2009

05:21 PM Bug #3890: EML 2 Dataset has trouble with a certain data table

Found that "tab delimited" datatables from Morpho are using "#x09" as the character. This does not work with the HSQL... ben leinfelder

01:52 PM Bug #3991: large workflow errors

this needs to be fixed if it remains a problem - retargeting to 2.0 ben leinfelder

01:51 PM Bug #3991: large workflow errors

I cleared the cache and tried opening the workflows (first the parts, then the whole).
It opens - sure there are tons... ben leinfelder

01:37 PM Bug #3991: large workflow errors

yikes! that's a lot of memory.
rain.xml seems to open (eventually) for me.
Looking into the "Unable to parse the Met... ben leinfelder

01:08 PM Bug #3691: JButton labels truncated on macOSX

Crawl reports the Refresh button on the Data sources is also truncated. Derik Barseghian

01:00 PM Bug #4036: WRM - connect to configurable provenance store

re: comment#1, I just verified it works on linux too. Derik Barseghian

12:47 PM Bug #4036: WRM - connect to configurable provenance store

Made a little progress - on the mac (and probably works on linux) the WRM now uses the top level recorder settings if... Derik Barseghian

12:51 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives

The two bugs related to search cells getting stuck in edit mode have been fixed.
A gui bug with row highlighting has... Derik Barseghian

10:44 AM Bug #4008: EML 2 Dataset throws errors when accessing public data from mixed public/private datasets

I recognize that the error messages are annoying, but I'm not sure what the alternative is.
If you are authenticated ... ben leinfelder

05/08/2009

09:22 AM Bug #4057: UserInteractiveShell message

I think you need to use an InitializableDelay.
UserInteractiveShell is based on InteractiveShell, for a sample
use, ... Christopher Brooks

07:46 AM Bug #4057 (New): UserInteractiveShell message

The message in the UserInteractiveShell doesn't make sense, and gives a "null" at the beginning.
Here is the curre... Chris Weed

05/05/2009

06:00 PM Bug #4056 (New): create developer documentation for svn configuration.

When svn checks in files, it checks them in using a binary mode.
This is a problem when files are checked in using w... Christopher Brooks

04:40 PM Bug #3949: Get the installer working with the new build system

Added functionality to the installer build task that allows it to pull in custom packs from modules. To use this, pu... Chad Berkley

01:33 PM Bug #4039: matlab actor always stops matlab process in wrapup

In order for the matlab process to persist after model execution, an engine cannot be opened in an actor's thread.
h... Daniel Crawl

10:45 AM Bug #4010: RExpression2 - tracking for backwards compatibility

ReadTable.xml
there's a issue with how I'm setting up the graphics device. it's purely my R code, since the followin... ben leinfelder

09:50 AM Bug #3985: Types resolved to unacceptable types

It seems like the error is thrown before R even runs, in which case it probably wouldn't be a problem with R itself. ... Oliver Soong

08:36 AM Bug #4022: undesired file:\ prefix added by FileParameter

I have this problem using version 1.0.0 and on both XP and Vista. At first after you said you can't reproduce it I tr... Tommy Tommy

05/04/2009

07:54 PM Bug #4055 (Resolved): leftover cachedata files

It seems that after data has been searched there are some left over data files in the .kepler/cache/cachedata directo... Aaron Aaron

07:12 PM Bug #4049: Import actor that already exists appends strange numbering scheme

I've checked in a fix, but am leaving this open and changing to a feature request -- see if there's a better way to g... Derik Barseghian

04:15 PM Bug #4049: Import actor that already exists appends strange numbering scheme

I should've been more clear, this is using the Kepler File => Import Archive (KAR) menu item and then looking at the ... Derik Barseghian

04:07 PM Bug #4049: Import actor that already exists appends strange numbering scheme

I'm not sure how to reproduce this.
Doing Tools -> Instantiate Component over and over again creates
Ramp
Ramp2
Ramp3... Christopher Brooks

05:46 PM Bug #4054: DataTurbine tree actor icon should be a can

fixed. Derik Barseghian

05:30 PM Bug #4054 (Resolved): DataTurbine tree actor icon should be a can

The small icon in the actor tree representing the DataTurbine actor should be a can, not the generic square. Derik Barseghian

05:19 PM Bug #4047: Remove Component doesn't work

I've fixed this problem.
However the behavior should be improved, and so I'm changing this bug to a request for enha... Derik Barseghian

12:54 PM Bug #4047: Remove Component doesn't work

When you Remove Component, this error appears: "Error in getting actor in ShowDocumentationAction", and the actor sta... Derik Barseghian

04:39 PM Bug #3985: Types resolved to unacceptable types

I downloaded this from
http://www.nceas.ucsb.edu/~soong/kepler/Unacceptable%20Types%20Problem.xml
and am uploading it... Christopher Brooks

04:21 PM Bug #4022: undesired file:\ prefix added by FileParameter

I can't reproduce this, the attached demo works as it should.
Is there a test case?
BTW - URL.toString() changed bet... Christopher Brooks

03:47 PM Bug #4053: deleting open composite actor may delete model

This is reproducible in Ptolemy.
The issue is that if a model has a composite and the composite is open,
what happens... Christopher Brooks

03:01 PM Bug #4053 (Resolved): deleting open composite actor may delete model

Under certain circumstances, deleting an open composite actor may result in deleting the remainder of the model. Here... Daniel Crawl

03:40 PM Bug #4050: dragging actors can leave artifacts until you stop dragging

The trail of visual artifacts issue was fixed by modifying KeplerGraphTableau to
extend Tableau and then modifying Wo... Christopher Brooks

12:41 PM Bug #4050: dragging actors can leave artifacts until you stop dragging

I can replicate this with Display and XYPlotter actors, they both leave vertical
green lines when dragged to the left... Christopher Brooks

03:37 PM Bug #2321: merge exp files into ptolemy CVS

I'm closing this.
The highlight issue was fixed by modifying KeplerGraphTableau to extend Tableau
and then modifying ... Christopher Brooks

10:06 AM Bug #2321: merge exp files into ptolemy CVS

There are selection and highlighting issues that should be addressed before
this bug is closed. Christopher Brooks

03:23 PM Bug #4017: Make sure module manager and installer work together wrt the classpath

The module manager and installer both use the same bootstrapper to build the classpath. All build classes that launc... Chad Berkley

03:14 PM Bug #3809: jni actors do not work

JNI actors now work with both the installed and the ant-executed versions of kepler. The java.library.path is also a... Chad Berkley

03:09 PM Bug #4010: RExpression2 - tracking for backwards compatibility

FIXED:
RExpression_Matrix_IO_Test.xml
-matrices now handled like R wants them to be (column-major) ben leinfelder

02:50 PM Bug #4052 (New): Should be able to store native libraries in a kar file

A kar file should be able to contain native libraries needed for a given actor. These libraries should be loaded at ... Chad Berkley

02:48 PM Bug #3074: Code library installation issues

libraries can now be stored in the lib directory of any module. This should allow individual modules to be able to l... Chad Berkley

10:34 AM Bug #3074: Code library installation issues

Kepler no longer relies upon installation of dlls into system32. the path variable is changed at runtime and the dll... Chad Berkley

01:20 PM Bug #4051 (Resolved): R - include R distribution in separate module

Instead of including the R dist in the core Kepler module, we want to have it in a separate module so that upgrades t... ben leinfelder

12:42 PM Bug #3593: exporting an actor to kar does not save portparameters that have been defined

Closing, seems fine. Derik Barseghian

12:02 PM Bug #3593: exporting an actor to kar does not save portparameters that have been defined

This dates back to kommineni, r12215: "addAttribute method has been changed to eliminate duplicate entries in moml fi... Derik Barseghian

11:34 AM Bug #4029: missing dependency for tools.jar in windows

Fixed in
https://kepler-project.org/developers/reference/kepler-and-eclipse
https://kepler-project.org/developers/te... Christopher Brooks

11:29 AM Bug #4028: Nondeterministic Merge Actor doesn't generate output

Solved the bug by reverting the change made in version 53061 (which was committed with message "Eclipse: removed unus... Bert Rodiers

11:25 AM Bug #4028: Nondeterministic Merge Actor doesn't generate output

53042 version of NondeterministicMerge works for me. Thanks for your work. jianwu jianwu

11:14 AM Bug #4028: Nondeterministic Merge Actor doesn't generate output

Does your model work if you revert the version of NondeterministicMerge back to 53042? In the next modification in th... Bert Rodiers

11:10 AM Bug #3999: WRP - create event-driven states for Kepler

TODO: design document. ben leinfelder

10:52 AM Bug #3999: WRP - create event-driven states for Kepler

Added Morpho-based "event-state" module to be use for communicating between tabs/views.
Likely need modifications to ... ben leinfelder

10:56 AM Bug #3931: Get the R actor working with JNI

The more I/We work with the RNI implementation of this actor, I believe we'll need to seriously consider using some o... ben leinfelder

10:32 AM Bug #3097: incorrect classpath in generated ptexecute.sh and momlexecute.sh

Execution now pauses. Will break "- MoMLSimpleApplication does not filter Display actor or any GUI Kepler actors." i... Chad Berkley

05/01/2009

06:01 PM Bug #3593: exporting an actor to kar does not save portparameters that have been defined

Checked in a fix.
We were intentionally skipping adding PortParameters when exporting to an actor kar. Does anyone ... Derik Barseghian

03:21 PM Bug #3593: exporting an actor to kar does not save portparameters that have been defined

I note that when I set a portparameter in an actor within a composite, and then export the composite, the value is sa... Derik Barseghian

04:03 PM Bug #4050 (Resolved): dragging actors can leave artifacts until you stop dragging

Dragging some actors leaves visual artifacts until you stop dragging. The color of the artifacts seems to match the a... Derik Barseghian

03:37 PM Bug #4049 (New): Import actor that already exists appends strange numbering scheme

When I import an actor that already exists, saying Yes to use the next available id, the new actor appends a numberin... Derik Barseghian

03:30 PM Bug #3242: dlls should not go in c:/Windows/System32

Fixed this by allowing the bootstrapper to modify the PATH env variable at runtime. While the java.library.path vari... Chad Berkley

02:09 PM Bug #3242: dlls should not go in c:/Windows/System32

After re-reading the jguru thread that christopher posted, I added common/lib to the PATH in windows and now there is... Chad Berkley

02:00 PM Bug #3242: dlls should not go in c:/Windows/System32

On windows XP, if the dlls are not in the System32 directory, I get the following error:
ptolemy.kernel.util.Illegal... Chad Berkley

02:51 PM Bug #2321: merge exp files into ptolemy CVS

Hi Chad, I am currently under the impression that it would be a substantial effort to open multiple actor canvases i... Aaron Aaron

02:34 PM Bug #2321: merge exp files into ptolemy CVS

Enabling multiple tabs to be opened in one window is a feature we already identified and mocked up as part of the rep... Matt Jones

01:08 PM Bug #2321: merge exp files into ptolemy CVS

Just noticed something weird about this. If you draw a rubber-band box around the actors, the selection is shown, bu... Chad Berkley

02:34 PM Bug #4048 (New): Get error message when too much code in single R actor

I have an R actor that has quite a few lines of code. It seems that when I have more than 3,224 (I think) characters ... Tommy Tommy

01:42 PM Bug #4047 (Resolved): Remove Component doesn't work

Right click an actor in library, Remove Component doesn't remove it from the tree. Derik Barseghian

01:05 PM Bug #4046 (New): ComadTest should report more details when detecting an error

The ComadTest actor is used to create automated tests of COMAD features. Because it is often useful to include sever... Timothy McPhillips