Activity
From 09/03/2009 to 10/02/2009
10/02/2009
- 05:43 PM Bug #4327: Workflow Run Manager - ability to import run archives
- This is basically working now, for run-archives as they currently exist (run metadata, workflow, report artifacts).
Y... - 05:17 PM Bug #4346: Searching for Saved Archive (KAR) workflow in default workflow folder gives error
- Recent changes to search should have fixed this. I don't see this error now.
- 05:08 PM Bug #4424: KeplerLSID should implement hashCode
- hashCode is implemented now, there's a JUnit test called KeplerLSIDTest that shows the contains method is working pro...
10/01/2009
- 04:50 PM Bug #4400: Parameters should be able to be dragged onto a report
- Provenance can now look up _workflow_ parameters (not just actor parameters).
- 07:23 AM Bug #4324: ptII/module-info/revision.txt not being updated
- revisions.txt has not been updated since 9/17.
bash-3.2$ svn log ptII/module-info/revision.txt
svn log ptII/module-...
09/30/2009
- 04:34 PM Bug #4321: Semantic types on workflows saved into library not searchable
- OK, so the search is now implemented as I believe we want it to be implemented. It is currently a very slow way to d...
- 04:02 PM Bug #4338: need to review usability and gui of module manager
- We also need to check:
1) whether the module manager can display new suites as they are published, switch suites eas... - 03:37 PM Bug #4425: problem with Open Archive with run KAR created in same session
- fixed in r20834. However see bug #4431.
- 03:37 PM Bug #4431 (New): Export Archive actions should share code where possible
- There should be a class with common gui-free export functionality that resides in core (or the like), that files like...
- 03:20 PM Bug #4430 (Resolved): hsql database name and port in Kepler should be configurable
- I can't start Kepler GUI when I have hadoop server running. It complains:
Caused by: java.sql.SQLException: Failed... - 01:43 PM Bug #4429 (New): EML 2 Dataset requires File Extension Filter parameter
- I'm not 100% sure this isn't just a lack of documentation. When using EML 2 Dataset on a compressed data table (so u...
09/29/2009
- 05:50 PM Bug #4425 (Resolved): problem with Open Archive with run KAR created in same session
- If you Export Archive from wrm to a kar in your workflows local repo, and then try to open it without first quitting ...
- 05:35 PM Bug #4419: KARFile openKARContents problem with open success
- Have tested more, and this bug seems fixed. There are a few other problems related to opening kar's, but I'll open di...
- 01:26 PM Bug #4419: KARFile openKARContents problem with open success
- The problem was some missing break statements in KARFile's openKARContents, fixed in r20815. I'll close this bug once...
- 04:42 PM Bug #4424 (Resolved): KeplerLSID should implement hashCode
- KeplerLSID overrides equals, and so it should therefore override hashCode as well.
I suspect this is why doing a ... - 04:13 PM Bug #4321: Semantic types on workflows saved into library not searchable
- Looking forward to any comments from Shawn or Chad
- 04:05 PM Bug #4321: Semantic types on workflows saved into library not searchable
- If you type the name of an actor in, I would expect the behavior that you described. However, the semantic search co...
- 03:38 PM Bug #4321: Semantic types on workflows saved into library not searchable
- I have looked into this bug a little. After downloading Kepler 1.0.0 I was able to match all the components in an On...
- 01:30 PM Bug #4421: Component Search fails
- Component search is working again, I've made it so that each result is separated in the component library which makes...
09/28/2009
- 12:50 PM Bug #4394: Need to develop requirements for configuration subsystem
- I have looked at the "requirements" and I noticed that they are fairly low-level. In fact, they aren't all that disti...
- 11:39 AM Bug #4394: Need to develop requirements for configuration subsystem
- Correct, there is no concept of permissions. We discussed this, and decided it would be essentially impossible for a...
- 11:32 AM Bug #4394: Need to develop requirements for configuration subsystem
- Oh, alright. And there's no concept of permissions, right? So any module can change any other module if they know the...
- 11:31 AM Bug #4394: Need to develop requirements for configuration subsystem
- The point is that property names are scoped within their module and namespace in their module, so methods for changin...
- 11:16 AM Bug #4394: Need to develop requirements for configuration subsystem
- I'm curious about the following implementation detail on the wiki:
8) The system will not allow modules to change th... - 09:26 AM Bug #4421 (Resolved): Component Search fails
- Component search is throwing a ClassCastException.
09/27/2009
- 10:27 PM Bug #4411: Remove KAR module prefixes from kar files
- I've checked in the kepler-tasks.jar into module-manager/lib after building it using the "ant task" command. This re...
- 10:23 PM Bug #4411: Remove KAR module prefixes from kar files
- I've modified MakeKars.java in the build-area so the module name does not appear in the kar name.
09/25/2009
- 08:17 PM Bug #4419: KARFile openKARContents problem with open success
- I modified ActorMetadataKAREntryHandler to return true upon successfully opening a workflow. This may help. Also th...
- 07:13 PM Bug #4419 (Resolved): KARFile openKARContents problem with open success
- If WorkflowRun KAREntryHandler open method returns true, KARFile openKARContents gives an error. It looks like all en...
09/24/2009
- 03:41 PM Bug #4408: Kar upload to repository tries to insert twice
- the uploader was using the karlsid (again) for the metadata.
fixed - 01:39 PM Bug #4408: Kar upload to repository tries to insert twice
- Soooo, metacat is doing an upload and then trying to do an insert of the same id. It looks like kepler is uploading ...
- 10:13 AM Bug #4408: Kar upload to repository tries to insert twice
- Hmm, sounds like this might be an ecogrid - Metacat issue. I'll look into it.
- 10:03 AM Bug #4408 (Resolved): Kar upload to repository tries to insert twice
- When choosing to save a KAR from the workflow canvas and then save to the repository, kepler sends an update request ...
- 01:38 PM Bug #4227: Provenance - use Integer return type in Queryable interface
- These methods now return null if the query has 0 results.
- 12:07 PM Bug #4411 (Resolved): Remove KAR module prefixes from kar files
- We can remove the module prefix from the Makekar function since it is redundant now.
- 12:00 PM Bug #4407: RExpression problems with named non-numeric vectors
- The structure is in place to preserve attribute data and such. Since RExpression is already dumping attribute data f...
- 11:51 AM Bug #4407: RExpression problems with named non-numeric vectors
- I see this as the "token value" that is being used in the myput() function:
structure(c("alpha", "beta"), .Names = c... - 08:12 AM Bug #4407 (New): RExpression problems with named non-numeric vectors
- RExpression seems to have a problem outputting named non-numeric vectors that is not present with named numeric vecto...
- 11:33 AM Bug #4410: Cannot open KARs from arbitrary location on disk
- Hmmm, another solution is to allow the opening of kars from outside the local repositories. But the next time you op...
- 11:16 AM Bug #4410: Cannot open KARs from arbitrary location on disk
- I would really like to be able to open a KAR from anywhere. This seems like a trivial enhancement - but one that buys...
- 11:12 AM Bug #4410 (Resolved): Cannot open KARs from arbitrary location on disk
- You cannot open a KAR from an arbitrary location on disk, it must reside in a local repository.
One work-around i... - 11:00 AM Bug #4409 (Resolved): View Documentation for an actor works once
- I can view the documentation for an actor in the actor library once. After that, I can no longer drag actors onto th...
09/23/2009
- 03:10 PM Bug #4395: Change how we Delete Report Items.
- Changed the GUI to facilitate this change, but need to revise the underlying approach in order to get this to work.
- 03:08 PM Bug #4400: Parameters should be able to be dragged onto a report
- We can now drag parameters onto a report. But, we still need to get them out of Provenance.
- 08:25 AM Bug #4139: port names are displayed twice
- The org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource actor causes
the port names to be displayed twice.
09/22/2009
- 06:05 PM Bug #4139: port names are displayed twice
- I apparently can't add an attachment and reopen in the same step.
- 06:04 PM Bug #4139: port names are displayed twice
- I don't know what I was thinking when I wrote this up the first time. I probably just got myself mixed up, but if I ...
- 05:41 PM Bug #4139: port names are displayed twice
- I'm marking this as WORKSFORME as the model from bug 4129 does not have
port names displayed twice. - 05:41 PM Bug #4139: port names are displayed twice
- I'm going to close this because the screenshot does not have duplicate port names.
- 03:45 PM Bug #3801: open dialog, common places pane has white box instead of text
- Fixing Bug 4282 fixed most of these problems. The remaining issue is:
the "Open Archive (KAR)" menu choice still has... - 03:34 PM Bug #4398: Truncated Names of Dynamic Items
- The names of the dynamic report items are displayed in a shorter format, with the full names available in the tooltip.
- 10:51 AM Bug #4360: Kepler gets slow under XP
- Edward wrote:
> Actually, the most common source of slowness I've seen is when you
> plot very large data sets. The ...
09/21/2009
- 04:41 PM Bug #4056: create developer documentation for svn configuration.
- I just noticed this bug after I posted to kepler-dev, so I'm including my post here.
> By default, when a file is ad... - 03:10 PM Bug #4373: Copyright Statements are Inconsistent
- I fixed a few files in the ptII tree that had the problem of missing
empty lines in the copyright.
$PTII/adm/copyrig... - 11:55 AM Bug #4404 (New): DataTurbine actor - instantiating actor without internet gives error msg
- When you create a DataTurbine actor when not connected to the internet you get an error message, since it tries to co...
- 11:28 AM Bug #4403 (Resolved): Make it more obvious as to where to drag the report items to.
- We need to make it more obvious that report items should be dragged to the report designer. Some suggestions were: h...
- 11:23 AM Bug #4402 (Resolved): When a report item is deleted clear the properties window
- When a report item is deleted the properties window should be cleared.
- 11:21 AM Bug #4401 (Resolved): Synchronize properties with selected report item
- Make the properties window show the properties for the report item that is selected.
- 11:19 AM Bug #4400 (Resolved): Parameters should be able to be dragged onto a report
- We need to make it so that parameters can be added to a report
- 11:18 AM Bug #4399 (Resolved): Highlighting of panel should be more obvious
- When the user selects a panel, the highlighting should be less subtle.
- 11:07 AM Bug #4398 (Resolved): Truncated Names of Dynamic Items
- Names of dynamic items should be truncated, with the tool tip showing the whole name.
- 11:06 AM Bug #4397 (Resolved): Panel should get selected whenever it has the focus
- Highlight the panel whenever it has the focus.
- 11:05 AM Bug #4396 (Resolved): Add a drag icon to the report item panels
- Add a drag icon to each of the report item panels. When the use clicks down, holds and drags on this icon, they can ...
- 11:02 AM Bug #4395 (Resolved): Change how we Delete Report Items.
- Instead of selecting the report item and then clicking on the delete button, we want to remove the delete button from...
- 09:54 AM Bug #4360: Kepler gets slow under XP
- Here at Berkeley, lots if people use Ptolemy under XP. I run Ptolemy regularly under Windows 2003 Server R2.
The mo...
09/18/2009
- 07:17 PM Bug #4308: Workflow Run Manager - problem with getWorkflowRunsForExecutions in mysql
- Fixed. The query for workflow runs was not valid in MySQL. Also, by default MySQL throws an exception when querying t...
- 03:45 PM Bug #4326: External Executor actor puts out an extra token when nonzero return
- Fixed.
- 03:37 PM Bug #4330: common/resources/configurations/config.xml gets modified during build or run
- Looks like this was fixed by bug 4370 The EcoGridServicesController trying to write persistent data back to the confi...
- 03:35 PM Bug #4370: Changes to Components and Data Preferences disappear on relaunch
- ok, I updated the EcoGridServicesController to persist the values without writing to the config file. Looks like thi...
- 01:47 PM Bug #4370: Changes to Components and Data Preferences disappear on relaunch
- oh no you're right the data source values are not persisting, the component preference values seem ok though.
- 01:44 PM Bug #4370: Changes to Components and Data Preferences disappear on relaunch
- I can't reproduce this. It may have been that the library was not building correctly before and the values weren't g...
- 11:34 AM Bug #4343: remove the full screen button
- I removed the icon in the toolbar and the menu item in the view menu. This can easily be readded by modifying the ui...
- 11:29 AM Bug #3898: update .kepler instead of removing it between versions
- (In reply to comment #11)
This idea (of passing parameter through the Java properties) is exactly what I'd like to h... - 11:08 AM Bug #3898: update .kepler instead of removing it between versions
- One possible solution would be to have the current devel version of kepler
use .kepler/2.0/ instead of .kepler/
I do...
09/17/2009
- 09:39 PM Bug #4394: Need to develop requirements for configuration subsystem
- I see that there are some requirements. But, in my opinion, those requirements are: (1) much too low-level. They are ...
- 04:57 PM Bug #4394: Need to develop requirements for configuration subsystem
- I agree that we need requirements and a good design before coding begins. No coding has begun. The current configur...
- 03:53 PM Bug #4394 (Resolved): Need to develop requirements for configuration subsystem
- I have noticed some development activity with respect to configuration that seems to consist of developing a fairly l...
- 04:17 PM Bug #4191: Eclipse build is slow the first time "Copying resources to the output folder"
- I have explored this problem a little further. Turns out Eclipse will copy all the .svn folders to the classes direc...
09/16/2009
- 06:37 PM Bug #4392 (Resolved): Delete KARCacheObject
- KARCacheObject should no longer be used. Delete this class and clean up any dependencies on it.
- 03:40 PM Bug #4312: Clicking cancel on "sure you want to exit" dialog exits anyway
- I fixed this bug by using code from TableauFrame to handle the exit instead of using the exit action itself. The pro...
09/15/2009
- 11:41 PM Bug #4390 (Resolved): Semantic Type tag deletion does not remove component from Ontology in the component library
- When I open a workflow that has a semantic type in the WRP suite I see the semantic type at the top of the window wit...
- 12:40 PM Bug #4388: remove the ptII module
- Yes, ppod is a "module" with no source code (what I call a "suite"), just a description.txt and a modules.txt in modu...
- 12:20 PM Bug #4388: remove the ptII module
- I think that would now be "ant change-to -Dsuite=ptolemy". Putting the module-info directory in a non-standard locati...
- 12:14 PM Bug #4388: remove the ptII module
- I'm sorry, but I'm a little confused. I thought ptII was a suite meant to enable Kepler developers to run Ptolemy fr...
- 12:05 PM Bug #4388: remove the ptII module
- Why can't we just create module-info as a top level directory in Ptolemy?
Otherwise, I object to deleting the ptII d... - 11:09 AM Bug #4388: remove the ptII module
- I think ptII/adm/kepler/module-info would work fine. I'll have to take a look at the build system to see how to chan...
- 11:06 AM Bug #4388: remove the ptII module
- Ah, right, the module-info directory.
This could go in ptII/adm/kepler/module-info.
adm is not shipped as part of the... - 10:50 AM Bug #4388: remove the ptII module
- The ptII module actually does provide functionality. It contains the metadata needed to build ptolemy successfully. ...
- 10:40 AM Bug #4388 (Resolved): remove the ptII module
- Now that the copy of Top.java has been removed, the ptII module should
be removed as it contains no .java files and ... - 12:35 PM Bug #4324: ptII/module-info/revision.txt not being updated
- Excellent. For whatever reason, the cron job on Pantara was not running. Hopefully this works.
- 12:28 PM Bug #4324: ptII/module-info/revision.txt not being updated
- I created a script that lives on code.kepler-project.org (ceres) to do this. It is set to run in a cron job every da...
09/14/2009
09/11/2009
- 02:01 PM Bug #4246: Reorganize code in util, core and gui modules
- Have now moved all of the jars from common and util that can be moved. The easy parts of this bug is now done, in th...
- 10:45 AM Bug #4246: Reorganize code in util, core and gui modules
- Added this page:
https://kepler-project.org/developers/teams/framework/module-reorganization-summary
Need to track ... - 10:43 AM Bug #4150: Save in Library broken
- Following my procedure in comment #3, I can now find a folder with an entry for the actor beneath it without relaunch...
- 10:42 AM Bug #4282: Duplicate of ptolemy.gui.Top
- I've removed all of my changes from yesterday and I have not re-added Top.java to the ptII module, so this bug is eff...
- 09:48 AM Bug #4282: Duplicate of ptolemy.gui.Top
- That sounds good to me.
- 10:41 AM Bug #4382 (Resolved): Remove switching between kepler and ptolemy
- From bug 4282:
Absent any objections, I will implement the following solution:
Let's remove the ability to cha... - 10:31 AM Bug #4381 (Resolved): Open KAR: needs to work when opening from outside the /workflows directory
- I'm noticing that the workflow is opened, but that the LSID is changed even if i do not make any changes to the workf...
- 10:27 AM Bug #3948: Create new configuration system supporting modules
- After looking at Matt's UML diagram (https://code.kepler-project.org/code/kepler-docs/trunk/teams-and-wg/2-infr-teams...
09/10/2009
- 09:28 PM Bug #4380 (Resolved): Removing LocalRepository does not remove actors from Ontologies
- scenario:
place a kar containing a component that has a semantic type in a folder
add that folder as a local reposi... - 09:16 PM Bug #4150: Save in Library broken
- So after adding a LocalRepository and clicking on OK in the component preferences tab. The entire library gets rebui...
- 07:05 PM Bug #4282: Duplicate of ptolemy.gui.Top
- Absent any objections, I will implement the following solution:
Let's remove the ability to change to Ptolemy from t... - 02:53 PM Bug #4282: Duplicate of ptolemy.gui.Top
- I've removed my changes to Top.java in ptolemy and commented out the configuration option in kepler. There is no way...
- 01:45 PM Bug #4282: Duplicate of ptolemy.gui.Top
- ptolemy.gui cannot depend on ptolemy.actor because Ptplot uses
ptolemy.gui.Top and does not ship with ptolemy.actor.
... - 01:05 PM Bug #4282: Duplicate of ptolemy.gui.Top
- I added a configuration parameter called _alternateTopHandler into the configuration. This defines a class to overri...
- 02:26 PM Bug #4379: PreferencesFrame can be opened multiple times
- Added a singleton class called PreferencesTracker to determine if a PreferenceFrame is currently open. PreferencesAc...
- 02:16 PM Bug #4379 (Resolved): PreferencesFrame can be opened multiple times
- It is currently possible to open up several PreferencesFrame objects by repeatedly clicking the source button on eith...
- 11:46 AM Bug #4372: demos in doc-index.htm don't exist (Hello World, Simple Addition etc.)
- I added instructions on how to get the outreach module and changed
the demo links to point to the demos in the outrea...
09/09/2009
- 05:16 PM Bug #4362: component search performance
- Yeah seems like this could be improved quite a bit. The OntLibrarySearcher class does the heavy lifting. I added a ...
- 12:53 PM Bug #4372: demos in doc-index.htm don't exist (Hello World, Simple Addition etc.)
- Would be nice to package demos in a KAR file (named demos.kar perhaps) and include them in the kar folder of their re...
- 12:41 PM Bug #4372: demos in doc-index.htm don't exist (Hello World, Simple Addition etc.)
- most demos are now in the 'outreach' module (outreach/resources/demos/getting-started, for example)
the R demos are i... - 10:21 AM Bug #4372 (Resolved): demos in doc-index.htm don't exist (Hello World, Simple Addition etc.)
- I have some visitors today and would like to show off the
devel version of Kepler.
When I start kepler, the page ... - 12:20 PM Bug #4373 (Resolved): Copyright Statements are Inconsistent
- The copyright statement on Java files says "... the following two paragraphs appear ...". But some of the copyrights...
- 11:07 AM Bug #4314: exception when searching ecogrid
- The bug was fixed after removing the hosts which are down.
- 09:26 AM Bug #4371: pipe highlighting under "Animate at Runtime"
- This would be nice to do some day. I'm changing it to an enhancement.
Bert looked at highlighting links between act... - 08:47 AM Bug #4371 (New): pipe highlighting under "Animate at Runtime"
- Understanding of complex work-flow execution would be easier if the pipeline (connectors) as
well as the actors were...
09/08/2009
- 05:02 PM Bug #4314: exception when searching ecogrid
- The reason is that some services, e.g. digir service and local service, are down. When I change their default value, ...
- 04:26 PM Bug #4150: Save in Library broken
- ah the problem here is just that a folder doesn't get added to the library when you create a new local repository
- 04:03 PM Bug #3672: Open/Save Workflow as KAR Archive
- works now
- 03:25 PM Bug #4370 (Resolved): Changes to Components and Data Preferences disappear on relaunch
- If you click on the Sources button and change settings beneath Components or Data, these changes are gone after you q...
09/04/2009
- 03:17 PM Bug #4247: Application menu items sometimes disappear on OS X
- Whoops - that thread does discuss showMessageDialog, but my test was to showConfirmDialog. So this likely works for b...
- 03:13 PM Bug #4247: Application menu items sometimes disappear on OS X
- Found mention of this on the internet, not sure if it's been resolved. I tried the workflow-around mentioned (don't p...
- 12:34 PM Bug #4357: Workflow Run Manager does not mark last failed execution red
- should be fixed by r20571 for the most part.
Leaving open since might still be a problem when using PN - see bug depe... - 11:17 AM Bug #4150: Save in Library broken
- This didn't work for me:
- add and select a local repo for Save and Search
- customized an Rexpression actor
- righ... - 10:51 AM Bug #4369: Folder creation when saving a KAR
- It is now detecting and creating the folder, but still throws a stacktrace for some reason. Need to debug this furth...
- 10:50 AM Bug #4369 (Resolved): Folder creation when saving a KAR
- When saving a KAR file, if the user uses the "New Folder" button to save a kar into a subdirectory of a folder that e...
09/03/2009
- 04:20 PM Bug #3220: "Save" from TextEditor interferes with workflow save-before-closing prompt
- Ben can you check in this patch? I can't figure out how to check files into the Ptolemy svn repo. Thanks
- 04:19 PM Bug #4344: Open Workflow from library
- You can do this now
- 04:17 PM Bug #4278: Changes to a reopened KAR are not saved to the new KAR
- yes this is ok now in the kepler suite
- 04:16 PM Bug #4150: Save in Library broken
- seems to work for me in the kepler suite
- 02:12 PM Bug #4363 (New): wrm does not properly handle ModelReference actor
- The ModelReference actor runs externally defined workflows. This currently breaks some functionality in the wrm:
*...
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