Kepler

10/21/2009

05:47 PM Bug #4481: KNB authentication and pulling data

(In reply to comment #5)
> That, uh, would be because you apparently aren't in the kruger-tpc group that
> has access... Jim Regetz

11:27 AM Bug #4481: KNB authentication and pulling data

That, uh, would be because you apparently aren't in the kruger-tpc group that has access... Regetz? Oliver Soong

11:19 AM Bug #4481: KNB authentication and pulling data

hmm I see. I was not capitalizing Kruger. I'm able to see results using only authenticated interface but now I'm gett... shirley shirley

11:10 AM Bug #4481: KNB authentication and pulling data

What are your search terms? There's a surprise about case. Searching for kruger and Kruger are the same for unauthe... Oliver Soong

11:02 AM Bug #4481: KNB authentication and pulling data

I've tried only searching through the authenticated interface sources, but when I do this, I don't receive any result... shirley shirley

05:15 PM Bug #4483: Module dependencies in MoML files

This is the reason I believe we need to store the active module configuration inside the KAR is some manner. Then whe... David Welker

05:10 PM Bug #4483: Module dependencies in MoML files

Definitely inelegant. Down the road could it be a serious problem though? Should we disallow even the attempt to op... Aaron Aaron

04:17 PM Bug #4483: Module dependencies in MoML files

You can still execute the workflow after skipping those class not found exceptions when you open the workflow - but i... ben leinfelder

04:15 PM Bug #4483 (Resolved): Module dependencies in MoML files

To reproduce:
Save a KAR from the WRP suite
change to the kepler suite
on startup you see the error:
Error enc... Aaron Aaron

03:02 PM Bug #4482: JRE Exception Access Violations

The problem is likely specific to the machine, graphics card, OS and JVM.
Try upgrading the JRE that you are using.
... Christopher Brooks

02:53 PM Bug #4482: JRE Exception Access Violations

Is there anything I can do to avoid this? I hate saving my work. Oliver Soong

02:43 PM Bug #4482: JRE Exception Access Violations

These are Java issues. Both stack traces show the problem being in the
AWT-EventQueue thread.
The one with a usefu... Christopher Brooks

02:10 PM Bug #4482 (Resolved): JRE Exception Access Violations

I've gotten a couple of these. All of Kepler just goes without warning. I have 2 error logs, which I will attach. ... Oliver Soong

02:00 PM Bug #4478: Configuring ports

I modified PortConfigurerDialog._apply() so that if the change request fails,
then the port configurer dialog will cl... Christopher Brooks

12:04 PM Bug #4478: Configuring ports

It's frustrating that we can all see the original bug, but can't reliably replicate it.
As for the port swapping thi... Oliver Soong

11:54 AM Bug #4478: Configuring ports

I was able to reproduce this once, but now I can't.
The problem here is that swapping the name of two ports (or any ... Christopher Brooks

10:27 AM Bug #4478: Configuring ports

I can't seem to go through the actions that replicate it but it happened again yesterday for me and I wasn't doing an... shirley shirley

09:41 AM Bug #4478: Configuring ports

I can't seem to figure out exactly what replicates it. The closest I can come is getting ports to swap relations.
I... Oliver Soong

11:48 AM Bug #4439: reporting displays output for a different actor

This is looking more and more like an intricacy of Provenance recording. My hunch is that when you first add the RExp... ben leinfelder

11:30 AM Bug #4359: Model Reference causes String index out of range error in variable setter

The exception is from the provenance recorder. Daniel Crawl

11:22 AM Bug #4436: composite actor output ports cannot be added to reports

Did some more investigation:
-we can allow CompositeActor ports to be added to the report layout, but provenance isn'... ben leinfelder

10:28 AM Bug #4441: reporting fails to output figure

I removed the ProvenanceRecorder and ReportingListener entries from the MOML of the bovine workflow. Then I opened th... ben leinfelder

09:31 AM Bug #4469: Report Viewer - labels take up too much space

increased the proportional width of the center (main content) column ben leinfelder

08:55 AM Bug #4276: RExpression temp files can collide

included in r21133 now ben leinfelder

08:53 AM Bug #4276: RExpression temp files can collide

i had to add an extra display actor so that type checking did not fail on the second run of the workflow, but that's ... ben leinfelder

08:52 AM Bug #4276: RExpression temp files can collide

about to submit the fix that oliver provided. ben leinfelder

10/20/2009

05:38 PM Bug #4478: Configuring ports

Yep, it looks like a bug. Let me know if you can replicate it. I just tried it in Ptolemy and could not get a stack... Christopher Brooks

10:32 AM Bug #4478: Configuring ports

I think I'm able to replicate this. FYI, I still have 12506K memory free. I'm not sure it's a memory issue, and I'm... Oliver Soong

05:25 PM Bug #4470: Report Viewer - labels should be vertically centered

used this FOP property in the table-cell: display-align="center" ben leinfelder

05:08 PM Bug #4468: Report Viewer - message to run workflow first

added MessageHandler.message() if no previous executions were found. i believe that's less intrusive than rearranging... ben leinfelder

04:56 PM Bug #4474: Report viewer - enable scroll wheels

this is actually a FOP limitation...this is in the FOP source for PreviewPanel class that we use:
"// FIXME should ad... ben leinfelder

03:59 PM Bug #4471: Report Viewer - remove TOC

removed from the configuration in WRP suite. ben leinfelder

03:58 PM Bug #4481: KNB authentication and pulling data

Shirley, just FYI, the authentication window only pops up when needed. That means the first time you do an authentic... Oliver Soong

03:09 PM Bug #4481 (Resolved): KNB authentication and pulling data

In order to sign into KNB with my username and password, I need to clean my cache (no way to manual force the authent... shirley shirley

03:58 PM Bug #4472: Report Viewer - use different ViewPane class

added SingleViewPane class and am now using it in the WRP suite for the Report Viewer view ben leinfelder

03:33 PM Bug #4466: Report Designer - report layout not shown when opening KARs

using the event-state module to broadcast to the report layout UI that the report layout model has changed and that i... ben leinfelder

10/19/2009

01:56 PM Bug #3948: Create new configuration system supporting modules

I've been working on prototyping and setting up unit tests for the configuration system. There are a few issues I've... Chad Berkley

01:15 PM Bug #4465: Report Designer - "drag to here" paper should disappear

'Drag to here' paper now disappears whenever you drag a report item panel into the report. It also re-appears if you... debi staggs

12:25 PM Bug #4362: component search performance

Subsequent searches increase library refresh times substantially for large result sets. This is probably due to obje... Aaron Aaron

12:07 PM Bug #4362: component search performance

After merging the tree the results of the timing analysis are below. The data set used was slightly different from b... Aaron Aaron

12:24 PM Bug #4397: Panel should get selected whenever it has the focus

Panel is now selected and highlighted whenever it gets the focus. debi staggs

12:24 PM Bug #4464: Report Designer - selection pointer behavior

- Crosshair point has been removed.
- Arrow turns to finger on hover, except for text areas.
- Clicking anywhere (or ... debi staggs

12:21 PM Bug #4402: When a report item is deleted clear the properties window

What currently happens here, is that when a selected report item is deleted, then that panel disappears, and the sele... debi staggs

11:37 AM Bug #4449: exception when dragging workflow

I am unable to reproduce this. Can you give more detail on how to reproduce this? What actors you're using, what OS... Aaron Aaron

10:34 AM Bug #4401: Synchronize properties with selected report item

The properties panel now displays the properties for whichever report item panel is selected. debi staggs

10/16/2009

09:47 PM Bug #4480 (In Progress): can't view more than one of workflow editor, report designer, and report viewer at a time

It's a little frustrating to have to constantly find that little menu in the upper right hand corner and flip between... Oliver Soong

09:40 PM Bug #4471: Report Viewer - remove TOC

I like having that there. It lets me know what I'm looking at in a succinct manner the report designer can't because... Oliver Soong

12:02 PM Bug #4471 (Resolved): Report Viewer - remove TOC

the "Report Contents" tab is mostly useless - remove it from this view ben leinfelder

04:24 PM Bug #4475: Order context menu items consistently

did that already Aaron Aaron

12:15 PM Bug #4475 (Resolved): Order context menu items consistently

There is a mix of options, sure, but options that appear across different context menus (ie "Open") should appear in ... ben leinfelder

04:24 PM Bug #4477: Grey out "undraggables"

duplicate
*** This bug has been marked as a duplicate of bug 4463 *** Aaron Aaron

12:17 PM Bug #4477 (Resolved): Grey out "undraggables"

In the Components tree we now have non-workflow items (items contained in KARs). These should be marked as different ... ben leinfelder

04:24 PM Bug #4463: Grey out component names in the component library that can not be dragged to the canvas

*** Bug 4477 has been marked as a duplicate of this bug. *** Aaron Aaron

04:11 PM Bug #4448: KAREntry dependencies should be observed during KAR Cacheing

KAR lsid dependencies are now observed during cacheing of KAR contents. Aaron Aaron

04:11 PM Bug #4479 (Resolved): Error messages are not imported during run import

When importing a WorkfowRun that contains error messages into provenance (creating a 'husk run'), the error messages ... Derik Barseghian

04:07 PM Bug #4462: Component search in remote repositories not working

The problem here was that org.kepler.objectmanager.repository.EcogridRepositoryLibrarySearcher was set as the _reposi... Aaron Aaron

04:03 PM Bug #4392: Delete KARCacheObject

KARCacheObject has been deleted. Aaron Aaron

03:53 PM Bug #4478: Configuring ports

You are probably out of memory, next time use the OS to check how much
memory is being used. Also, look under Tools ... Christopher Brooks

03:36 PM Bug #4478 (New): Configuring ports

When the Kepler dev has been running for a long time (a few hours), there appears to be a problem with the configurin... shirley shirley

03:26 PM Bug #4450: Saving workflow in Windows 7

I shut down kepler and restarted and the problem seems to have disappeared.
(In reply to comment #2)
> I can't repli... shirley shirley

12:16 PM Bug #4476 (Resolved): Tagging / Workflow Run Manager interaction problems

There are some problems with Tagging /WRM interaction. We can add/refine this list as we go.
1) Displaying the tag... Derik Barseghian

12:08 PM Bug #4474 (Resolved): Report viewer - enable scroll wheels

The viewer does not respond to scroll wheel actions currently. It should! ben leinfelder

12:06 PM Bug #4473 (Resolved): Add WRM to bottom of report viewer for navigation

Still need to design exactly how this will work out. ben leinfelder

12:05 PM Bug #4472 (Resolved): Report Viewer - use different ViewPane class

We have too many unused "areas" of the view where it looks like there should be some other window hidden. we just nee... ben leinfelder

12:00 PM Bug #4470 (Resolved): Report Viewer - labels should be vertically centered

Instead of appearing at the top of the item that they are labeling, L and R labels should be in the vertical center o... ben leinfelder

11:58 AM Bug #4469 (Resolved): Report Viewer - labels take up too much space

left and right labels seem to hog real estate unnecessarily. ben leinfelder

11:57 AM Bug #4468 (Resolved): Report Viewer - message to run workflow first

If switched to the report viewer before running a workflow, there should be a message indicating that you must run th... ben leinfelder

11:54 AM Bug #4467 (Resolved): WRP - restarting/reopening Kepler throws error

Chad reported this during devLunch:
error restarting/opening Kepler:
"ERROR (org.kepler.reporting.rio.fop.ReportPa... ben leinfelder

11:29 AM Bug #4466 (Resolved): Report Designer - report layout not shown when opening KARs

If I save a workflow+report layout as a KAR and then attempt to reopen the KAR after restarting Kepler, the report la... ben leinfelder

11:24 AM Bug #4465 (Resolved): Report Designer - "drag to here" paper should disappear

After we have one or more items on the report we should hide the helpful "drag here" paper. If all items are deleted ... ben leinfelder

11:23 AM Bug #4464 (Resolved): Report Designer - selection pointer behavior

-do not use cross hair pointer anywhere
-arrow turns to finger on hover over any item (anywhere on item except text ... ben leinfelder

11:22 AM Bug #4325: Workflow Run Manager - deleted runs sometimes reappear after Kepler relaunch

This is fixed, but we need to test to see if the fix degraded performance (so far it seems fine) before closing.
Dan... Derik Barseghian

11:19 AM Bug #4161: Develop kepler workflow execution engine

re-targeting to wrp module, although it may be a 2.0 bug to extend kepler so that it can receive user credentials whe... ben leinfelder

11:14 AM Bug #4247: Application menu items sometimes disappear on OS X

The workaround in comment #7 works, and was implemented.
This bug should now serve as a reminder: before wrp-modules... Derik Barseghian

11:08 AM Bug #4457: Workflow Run Manager - past Report Layouts don't open

This bug likely depends on #4132, which I should fix before more work goes into this one. Derik Barseghian

10:55 AM Bug #4231: Workflow Run Manager - failed runs should be highlighted red

Runs are highlighted a light red now. This can be closed when #4230 is fixed. Derik Barseghian

10:43 AM Bug #4410: Cannot open KARs from arbitrary location on disk

I vote, and am moving to, wrp-modules-1.0.0 target for this bug. Derik Barseghian

10/15/2009

12:41 PM Bug #4462: Component search in remote repositories not working

Adding to this bug the feature enhancement of being able to search in multiple remote repositories for components... Aaron Aaron

12:36 PM Bug #4462 (Resolved): Component search in remote repositories not working

Selecting the checkboxes next to remote repositories from the source button of the component library tab does not inc... Aaron Aaron

12:40 PM Bug #4463: Grey out component names in the component library that can not be dragged to the canvas

It's my guess that this will be hard to do, but will look into it. Aaron Aaron

12:40 PM Bug #4463 (Resolved): Grey out component names in the component library that can not be dragged to the canvas

It was suggested that to be more in-line with historical functionality of the component library that the names of com... Aaron Aaron

12:25 PM Bug #4448: KAREntry dependencies should be observed during KAR Cacheing

Turns out the reporting module did not break this as I had assumed previously. It is a good idea to implement this ... Aaron Aaron

12:15 PM Bug #4410: Cannot open KARs from arbitrary location on disk

*** Bug 4381 has been marked as a duplicate of this bug. *** Aaron Aaron

12:15 PM Bug #4381: Open KAR: needs to work when opening from outside the /workflows directory

marking this as a duplicate, use bug 4410 for further discussion and tracking
*** This bug has been marked as a dupl... Aaron Aaron

12:14 PM Bug #4321: Semantic types on workflows saved into library not searchable

semantic types on workflows are now searchable in the component library, closing this bug, see bug 4362 for further t... Aaron Aaron

10/14/2009

07:41 PM Bug #4458 (New): test for moving kepler directory

I've been getting an error during the first launch after an ant clean-cache when using the wrp suite, to do with miss... Derik Barseghian

05:52 PM Bug #4431: Export Archive actions should share code where possible

Because the WorkflowRun KAR is generated without using the ExportArchiveAction functionality from the gui, it is impo... Aaron Aaron

05:43 PM Bug #4457: Workflow Run Manager - past Report Layouts don't open

We found out today that the ReportLayoutKAREntryHandler was serializing the ReportLayout object to the cache as xml i... Aaron Aaron

05:13 PM Bug #4457 (Resolved): Workflow Run Manager - past Report Layouts don't open

If in WRP you create a report layout, run the workflow, quit and restart kepler, and then "Open Workflow in New Windo... Derik Barseghian

05:06 PM Bug #4456 (Resolved): Workflow Run Manager in Report Viewer

If in WRP you change to the Report Viewer and unhide the bottom panel where the Workflow Run Manager normally is, it'... Derik Barseghian

04:50 PM Bug #4455 (Resolved): provenance schema must meet tag storage and search needs

V8 of the provenance schema must provide for tag storage and search. We will need to search for runs and workflows th... Derik Barseghian

04:41 PM Bug #4454 (Resolved): Workflow Run Manager - ability to display new run tags

To tag a run, you select the row in the WRM table and enter or select a new tag with the tagging ui. As soon as a run... Derik Barseghian

04:34 PM Bug #4453 (Resolved): tags don't show up in snow leopard (10.6)

Under snow leopard, you can see the Tags drowndown, but you never see any tags that you add -- they normally appear i... Derik Barseghian

03:54 PM Bug #4450: Saving workflow in Windows 7

I can't replicate this under my Windows 7 build, either at build 21037 or 21048. This includes calling File->Save As... Oliver Soong

03:26 PM Bug #4450: Saving workflow in Windows 7

I don't have access to Windows 7, can you try running a clean Ptolemy build
instead of a Kepler build?
To access the... Christopher Brooks

01:58 PM Bug #4450 (Resolved): Saving workflow in Windows 7

I'm working on a PC with Windows 7. I've created a new workflow and would like to save it so I can open it up later b... shirley shirley

01:31 PM Bug #4449 (Resolved): exception when dragging workflow

I get the following exception when trying to drag a workflow to the canvas from the workflows folder after saving a k... Chad Berkley

10/13/2009

08:24 PM Bug #4362: component search performance

Component search is working well now. Speed is very good, results are merged back into one tree, the search is now c... Aaron Aaron

04:47 PM Bug #4448 (Resolved): KAREntry dependencies should be observed during KAR Cacheing

The lsid dependency mechanism for KAREntries was implemented for opening items from a KAR in the proper order (so a w... Aaron Aaron

10/12/2009

04:55 PM Bug #4362: component search performance

I've added an advanced button to the Component search that allows the user to configure what they are searching for. ... Aaron Aaron

03:33 PM Bug #4390: Semantic Type tag deletion does not remove component from Ontology in the component library

close this bug, the component search is only searching over cached items so this no longer applies Aaron Aaron

03:13 PM Bug #4390: Semantic Type tag deletion does not remove component from Ontology in the component library

I'm a bit unclear on this behavior. If you're saying that the workflow still is
returned on a search for its tag even... Sean Riddle

03:13 PM Bug #4447 (Resolved): Change Icon for Dynamic Report Items

Make item for Dynamic Report Items more representative of an actor / worflow component icon. debi staggs

01:11 PM Bug #4446: serialized workflowRuns should have use a date standard

fixed in r55819. Serialized dates look like 2009-10-12T12:56:36.266-07:00. This isn't the most human readable, but it... Derik Barseghian

12:16 PM Bug #4446 (Resolved): serialized workflowRuns should have use a date standard

Serialized workflowRuns should use a date standard. I'd also like them to be human readable. I'm currently planning t... Derik Barseghian

10/09/2009

03:07 PM Bug #4441: reporting fails to output figure

Will this workflow ever run on OS X? ben leinfelder

02:58 PM Bug #4441: reporting fails to output figure

i'm finding that reporting classes do not seem to be invoked when running this workflow.
have to track it down furthe... ben leinfelder

12:10 PM Bug #4441: reporting fails to output figure

what are the R package dependencies i need?
"sp"
"rgdal"
etc?
ben leinfelder

09:48 AM Bug #4441: reporting fails to output figure

is there anything on the console that indicates an error/exception with the FOP rendering? ben leinfelder

11:48 AM Bug #4399: Highlighting of panel should be more obvious

The highlighting of the report item panels is now much more obvious. They now change from a very light semi-transpar... debi staggs

11:46 AM Bug #4445 (Resolved): Fix white backgrounds for button images

The report items now have a semi-transparent green background that makes it easier to distinguish the selected from t... debi staggs

09:43 AM Bug #4440: null pointer exception on viewing report when workflow has not been run

added check for null last execution id - will not try to continue assembling/rendering report if no execution is found. ben leinfelder

08:53 AM Bug #4443: gui-free class for provenance store settings

This is true of the "ReportingListener" as well - it requires that the workflow was authored in the gui (and saved) b... ben leinfelder

08:48 AM Bug #4436: composite actor output ports cannot be added to reports

while inconvenient, it sounds like you can still get the Token that passes through this port. sort of a "work around"... ben leinfelder

10/08/2009

02:59 PM Bug #4362: component search performance

From meeting with Sean and Derik.
NamedOntClass.getName() does not always return the name that appears in the compon... Aaron Aaron

12:29 PM Bug #4443: gui-free class for provenance store settings

I phrased this awkwardly. When programming I just want an easier way to get a new ProvenanceRecorder for the provenan... Derik Barseghian

10/07/2009

09:30 PM Bug #4443: gui-free class for provenance store settings

This sounds interesting, but I'm not sure I fully understand it.
Could this be a bit further expanded?
Can one not u... Bertram Ludaescher

05:01 PM Bug #4443 (Resolved): gui-free class for provenance store settings

It would be nice to have a gui-free class that gives you a new ProvenanceRecorder, created from your currently-in-use... Derik Barseghian

06:57 PM Bug #4325: Workflow Run Manager - deleted runs sometimes reappear after Kepler relaunch

Decreased write_delay to 100ms in r20931. Needs more testing to check for any performance hit, but so far so good. I ... Derik Barseghian

05:05 PM Bug #4325: Workflow Run Manager - deleted runs sometimes reappear after Kepler relaunch

Dan and I discussed this, it seems like a likely culprit. I'm going to try to change the write delay to see if it fix... Derik Barseghian

04:43 PM Bug #4325: Workflow Run Manager - deleted runs sometimes reappear after Kepler relaunch

HSQL delays writing to the file system after updates occur to the database. According to the docs, http://hsqldb.org/... Daniel Crawl

06:40 PM Bug #4444 (Resolved): Reevaluate Cache and Library startup procedure. Restore performance enhancements.

Need to revisit the startup caching and indexing procedures to see what makes sense with new systems and to restore t... Aaron Aaron

11:04 AM Bug #4362: component search performance

I have done some timing analysis of the new component search implementation.
There are 3 stages of the new component... Aaron Aaron

10/06/2009

06:31 PM Bug #4441: reporting fails to output figure

This problem also occurs on linux. Oliver Soong

05:48 PM Bug #4441 (Resolved): reporting fails to output figure

In the Bovine TB TPC workflow (tpc01-buffalo-tb.xml), I can't seem to get any figures to show in the reporting. The ... Oliver Soong

05:32 PM Bug #4440 (Resolved): null pointer exception on viewing report when workflow has not been run

If I create a workflow and a report, but do not execute the workflow, then try to view it in the viewer, I get a null... Oliver Soong

05:06 PM Bug #4362: component search performance

I started to design the second option above this morning to figure out how difficult it would be to do. Turns out it... Aaron Aaron

12:21 AM Bug #4362: component search performance

Sean and I discussed two possibilities for implementing fast component search today.
One was to use an SQL table tha... Aaron Aaron

03:57 PM Bug #4396: Add a drag icon to the report item panels

I think that the new and improved highlighting eliminates the need for this icon. Also added a cross hair cursor when... debi staggs

03:47 PM Bug #4349: clicking Cancel after Data search gives errors.

I'm unable to get this bug to occur anymore. I'm not sure what fixed it.
I've tried canceling during or after a sear... Derik Barseghian

03:29 PM Bug #4403: Make it more obvious as to where to drag the report items to.

I have added a background image to the report designer panel that shows an image of a piece of paper, with a folded c... debi staggs

03:27 PM Bug #4399: Highlighting of panel should be more obvious

I have significantly enhanced the highlighting and selection, but am still in the process of improving it. debi staggs

03:25 PM Bug #4395: Change how we Delete Report Items.

The way that we delete report items has been changed so that the GUI now shows a small 'delete' button on the right h... debi staggs

03:18 PM Bug #4439 (Resolved): reporting displays output for a different actor

I can't upload any useful example, so I'll describe how to generate the problem.
1. In Workflow Editor, add 1 SDF ... Oliver Soong

03:06 PM Bug #4438 (Resolved): View: label shouldn't appear when there's no view drop-down menu

In certain suites (e.g. workflow-run-manager) the "View:" label shows up even though the corresponding drop-down menu... Derik Barseghian

02:36 PM Bug #4434: Workflow Run Manager - add ability to hide/show columns

Spent some time on this, checked in code that's not called in r20892. It's not working yet and taking awhile to do, s... Derik Barseghian

02:19 PM Bug #4303: LSID Component Search

The full path is now properly returned in the results. Searching for KeplerLSIDs in the component library is fully o... Aaron Aaron

12:10 AM Bug #4303: LSID Component Search

This works now, however the tree path to the object is still not quite right. Close this bug after the full path is ... Aaron Aaron

12:26 PM Bug #3948: Create new configuration system supporting modules

Current configuration files in kepler:
Directory: common/configs/ptolemy/configs/kepler
authServicesBundle.propertie... Chad Berkley

12:26 PM Bug #4436 (Resolved): composite actor output ports cannot be added to reports

If I have a composite actor with an output port, I cannot add that output port to the report design template. I can ... Oliver Soong

10/05/2009

12:01 PM Bug #4434 (New): Workflow Run Manager - add ability to hide/show columns

A user of the workflow run manager should be able to hide or show columns, preferably in the manner shown in this old... Derik Barseghian

11:55 AM Bug #3948: Create new configuration system supporting modules

Configuration System Requirements agreed upon on 2009.10.02:
1) A module is able to add configuration properties to ... Chad Berkley

11:54 AM Bug #4394: Need to develop requirements for configuration subsystem

Since requirements are now decided, I will close this bug. All future posts on this subject should be made to bug 3948. Chad Berkley

11:53 AM Bug #4394: Need to develop requirements for configuration subsystem

After having a conference call about the requirements for the config system last friday, I think we are in agreement ... Chad Berkley

10/02/2009

05:43 PM Bug #4327: Workflow Run Manager - ability to import run archives

This is basically working now, for run-archives as they currently exist (run metadata, workflow, report artifacts).
Y... Derik Barseghian

05:17 PM Bug #4346: Searching for Saved Archive (KAR) workflow in default workflow folder gives error

Recent changes to search should have fixed this. I don't see this error now. Aaron Aaron

05:08 PM Bug #4424: KeplerLSID should implement hashCode

hashCode is implemented now, there's a JUnit test called KeplerLSIDTest that shows the contains method is working pro... Aaron Aaron

10/01/2009

04:50 PM Bug #4400: Parameters should be able to be dragged onto a report

Provenance can now look up _workflow_ parameters (not just actor parameters). ben leinfelder

07:23 AM Bug #4324: ptII/module-info/revision.txt not being updated

revisions.txt has not been updated since 9/17.
bash-3.2$ svn log ptII/module-info/revision.txt
svn log ptII/module-... Christopher Brooks

09/30/2009

04:34 PM Bug #4321: Semantic types on workflows saved into library not searchable

OK, so the search is now implemented as I believe we want it to be implemented. It is currently a very slow way to d... Aaron Aaron

04:02 PM Bug #4338: need to review usability and gui of module manager

We also need to check:
1) whether the module manager can display new suites as they are published, switch suites eas... jianwu jianwu

03:37 PM Bug #4425: problem with Open Archive with run KAR created in same session

fixed in r20834. However see bug #4431. Derik Barseghian

03:37 PM Bug #4431 (New): Export Archive actions should share code where possible

There should be a class with common gui-free export functionality that resides in core (or the like), that files like... Derik Barseghian

03:20 PM Bug #4430 (Resolved): hsql database name and port in Kepler should be configurable

I can't start Kepler GUI when I have hadoop server running. It complains:
Caused by: java.sql.SQLException: Failed... jianwu jianwu

01:43 PM Bug #4429 (New): EML 2 Dataset requires File Extension Filter parameter

I'm not 100% sure this isn't just a lack of documentation. When using EML 2 Dataset on a compressed data table (so u... Oliver Soong

09/29/2009

05:50 PM Bug #4425 (Resolved): problem with Open Archive with run KAR created in same session

If you Export Archive from wrm to a kar in your workflows local repo, and then try to open it without first quitting ... Derik Barseghian

05:35 PM Bug #4419: KARFile openKARContents problem with open success

Have tested more, and this bug seems fixed. There are a few other problems related to opening kar's, but I'll open di... Derik Barseghian

01:26 PM Bug #4419: KARFile openKARContents problem with open success

The problem was some missing break statements in KARFile's openKARContents, fixed in r20815. I'll close this bug once... Derik Barseghian

04:42 PM Bug #4424 (Resolved): KeplerLSID should implement hashCode

KeplerLSID overrides equals, and so it should therefore override hashCode as well.
I suspect this is why doing a ... Derik Barseghian

04:13 PM Bug #4321: Semantic types on workflows saved into library not searchable

Looking forward to any comments from Shawn or Chad Aaron Aaron

04:05 PM Bug #4321: Semantic types on workflows saved into library not searchable

If you type the name of an actor in, I would expect the behavior that you described. However, the semantic search co... Matt Jones

03:38 PM Bug #4321: Semantic types on workflows saved into library not searchable

I have looked into this bug a little. After downloading Kepler 1.0.0 I was able to match all the components in an On... Aaron Aaron

01:30 PM Bug #4421: Component Search fails

Component search is working again, I've made it so that each result is separated in the component library which makes... Aaron Aaron

09/28/2009

12:50 PM Bug #4394: Need to develop requirements for configuration subsystem

I have looked at the "requirements" and I noticed that they are fairly low-level. In fact, they aren't all that disti... David Welker

11:39 AM Bug #4394: Need to develop requirements for configuration subsystem

Correct, there is no concept of permissions. We discussed this, and decided it would be essentially impossible for a... Matt Jones

11:32 AM Bug #4394: Need to develop requirements for configuration subsystem

Oh, alright. And there's no concept of permissions, right? So any module can change any other module if they know the... Sean Riddle

11:31 AM Bug #4394: Need to develop requirements for configuration subsystem

The point is that property names are scoped within their module and namespace in their module, so methods for changin... Matt Jones

11:16 AM Bug #4394: Need to develop requirements for configuration subsystem

I'm curious about the following implementation detail on the wiki:
8) The system will not allow modules to change th... Sean Riddle

09:26 AM Bug #4421 (Resolved): Component Search fails

Component search is throwing a ClassCastException. Aaron Aaron

09/27/2009

10:27 PM Bug #4411: Remove KAR module prefixes from kar files

I've checked in the kepler-tasks.jar into module-manager/lib after building it using the "ant task" command. This re... Aaron Aaron

10:23 PM Bug #4411: Remove KAR module prefixes from kar files

I've modified MakeKars.java in the build-area so the module name does not appear in the kar name. Aaron Aaron

09/25/2009

08:17 PM Bug #4419: KARFile openKARContents problem with open success

I modified ActorMetadataKAREntryHandler to return true upon successfully opening a workflow. This may help. Also th... Aaron Aaron

07:13 PM Bug #4419 (Resolved): KARFile openKARContents problem with open success

If WorkflowRun KAREntryHandler open method returns true, KARFile openKARContents gives an error. It looks like all en... Derik Barseghian

09/24/2009

03:41 PM Bug #4408: Kar upload to repository tries to insert twice

the uploader was using the karlsid (again) for the metadata.
fixed ben leinfelder

01:39 PM Bug #4408: Kar upload to repository tries to insert twice

Soooo, metacat is doing an upload and then trying to do an insert of the same id. It looks like kepler is uploading ... Michael Daigle

10:13 AM Bug #4408: Kar upload to repository tries to insert twice

Hmm, sounds like this might be an ecogrid - Metacat issue. I'll look into it. Michael Daigle

10:03 AM Bug #4408 (Resolved): Kar upload to repository tries to insert twice

When choosing to save a KAR from the workflow canvas and then save to the repository, kepler sends an update request ... Michael Daigle

01:38 PM Bug #4227: Provenance - use Integer return type in Queryable interface

These methods now return null if the query has 0 results. Daniel Crawl

12:07 PM Bug #4411 (Resolved): Remove KAR module prefixes from kar files

We can remove the module prefix from the Makekar function since it is redundant now. Aaron Aaron

12:00 PM Bug #4407: RExpression problems with named non-numeric vectors

The structure is in place to preserve attribute data and such. Since RExpression is already dumping attribute data f... Oliver Soong

11:51 AM Bug #4407: RExpression problems with named non-numeric vectors

I see this as the "token value" that is being used in the myput() function:
structure(c("alpha", "beta"), .Names = c... ben leinfelder

08:12 AM Bug #4407 (New): RExpression problems with named non-numeric vectors

RExpression seems to have a problem outputting named non-numeric vectors that is not present with named numeric vecto... Oliver Soong

11:33 AM Bug #4410: Cannot open KARs from arbitrary location on disk

Hmmm, another solution is to allow the opening of kars from outside the local repositories. But the next time you op... Aaron Aaron

11:16 AM Bug #4410: Cannot open KARs from arbitrary location on disk

I would really like to be able to open a KAR from anywhere. This seems like a trivial enhancement - but one that buys... ben leinfelder

11:12 AM Bug #4410 (Resolved): Cannot open KARs from arbitrary location on disk

You cannot open a KAR from an arbitrary location on disk, it must reside in a local repository.
One work-around i... Derik Barseghian

11:00 AM Bug #4409 (Resolved): View Documentation for an actor works once

I can view the documentation for an actor in the actor library once. After that, I can no longer drag actors onto th... Oliver Soong

09/23/2009

03:10 PM Bug #4395: Change how we Delete Report Items.

Changed the GUI to facilitate this change, but need to revise the underlying approach in order to get this to work. debi staggs

03:08 PM Bug #4400: Parameters should be able to be dragged onto a report

We can now drag parameters onto a report. But, we still need to get them out of Provenance. debi staggs

08:25 AM Bug #4139: port names are displayed twice

The org.ecoinformatics.seek.datasource.eml.eml2.Eml200DataSource actor causes
the port names to be displayed twice. Christopher Brooks

09/22/2009

06:05 PM Bug #4139: port names are displayed twice

I apparently can't add an attachment and reopen in the same step. Oliver Soong

06:04 PM Bug #4139: port names are displayed twice

I don't know what I was thinking when I wrote this up the first time. I probably just got myself mixed up, but if I ... Oliver Soong

05:41 PM Bug #4139: port names are displayed twice

I'm marking this as WORKSFORME as the model from bug 4129 does not have
port names displayed twice. Christopher Brooks

05:41 PM Bug #4139: port names are displayed twice

I'm going to close this because the screenshot does not have duplicate port names. Christopher Brooks

03:45 PM Bug #3801: open dialog, common places pane has white box instead of text

Fixing Bug 4282 fixed most of these problems. The remaining issue is:
the "Open Archive (KAR)" menu choice still has... Christopher Brooks

03:34 PM Bug #4398: Truncated Names of Dynamic Items

The names of the dynamic report items are displayed in a shorter format, with the full names available in the tooltip. debi staggs

10:51 AM Bug #4360: Kepler gets slow under XP

Edward wrote:
> Actually, the most common source of slowness I've seen is when you
> plot very large data sets. The ... Christopher Brooks