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From 12/30/2009 to 01/28/2010

01/29/2010

06:09 PM Bug #4710 (Resolved): RExpression fails to convert arrayType(niltype)
Create a workflow with 2 RExpressions. The first should output c(NA, NA). The second should take the output from th... Oliver Soong
05:49 PM Bug #4709 (Resolved): error updating ptolemy/src
Mark was trying the latest Kepler and ran into a problem with the build system. I believe he did a full checkout of ... Oliver Soong
05:45 PM Bug #4705: ant change-to -Dsuite=wrp gives error
This is fixed. Oliver Soong

01/28/2010

01:16 PM Bug #4705: ant change-to -Dsuite=wrp gives error
This has to do with the changes to the ptolemy module that David made last night. He is working on a resolution. Chad Berkley
11:15 AM Bug #4705: ant change-to -Dsuite=wrp gives error
I get this as well with "change-to -Dsuite=kepler" at r22632. Sean Riddle
10:23 AM Bug #4705: ant change-to -Dsuite=wrp gives error
Oh, this is at r22632. Oliver Soong
10:00 AM Bug #4705 (Resolved): ant change-to -Dsuite=wrp gives error
Error: ptolemy is either not a suite or wasn't downloaded correctly.
ptolemy looks like it downloaded, svn returne...
Oliver Soong
12:45 PM Bug #4322: Attempting to save changes to a workflow saved in a KAR file fails
Yeah, this still needs to get done. Will make sure to get it into the RC1 release. Aaron Aaron
12:42 PM Bug #4515: Finish and Document the Save/Open KAR file functionality
I think we can close this one now. All core save/open kar functionality has been completed. If we need better docum... Aaron Aaron
12:28 PM Bug #4483: Module dependencies in MoML files
Chad I've added code to ImportModuleDependenciesAction that rebuilds the library after new modules are downloaded. T... Aaron Aaron
10:50 AM Bug #4634: run archive causes NPE when building local repository
This got fixed somewhere along the line. Oliver Soong
10:49 AM Bug #4706 (New): support provenance in master-slave 2.0
provenance should be supported in Master-Slave 2.0. There should be an option on whether to firstly save provenance i... jianwu jianwu
10:38 AM Bug #4559: local repositories not showing up in components tree
Not sure when the last bit got fixed, but it seems to be working now. Oliver Soong
08:54 PM Bug #4559: local repositories not showing up in components tree
Oliver, can you recheck if this is still happening and close this bug if it is covered in other bugs or succinctly st... Aaron Aaron
10:19 AM Bug #4682: losing reports from KARs
needed to ensure we were listening to all revisions of the named object.
reopen if the problem persists
ben leinfelder
09:41 PM Bug #4682: losing reports from KARs
when I reopen the saved KAR I see that the model (TypedCompositeActor) NamedObj that issues the updateRevision() is a... ben leinfelder
07:49 PM Bug #4682: losing reports from KARs
i'm testing a Map-based ObjectManager implementation so that we don't end up with different namedObjs with the same L... ben leinfelder
10:07 AM Bug #3072: Security issues with distributed execution
It can be configured by permission policy file at slave side. Users who start slave will know their requirements and ... jianwu jianwu
09:58 AM Bug #3069: start slave from gui
slave should be started in both GUI and command line way. Users may remotely login slave machine, start slave by comm... jianwu jianwu
09:51 AM Bug #3068: rmiregistry should be started programmatically
Users may start Kepler GUI at slave side. They also may only need to start slaveController especially when they can o... jianwu jianwu
09:05 PM Bug #4662: roll revision vs. new object ID
This sounds like a WRP specific issue. Reassigning to Ben for the meantime.
Oliver the short answer to having Objec...
Aaron Aaron
08:42 PM Bug #4704: Generate XML for a KARFile
Shell code has been created in the core module: org.kepler.kar.karxml.KarXmlGenerator Aaron Aaron
08:42 PM Bug #4704 (Resolved): Generate XML for a KARFile
Create an XML string based on the Manifest and Entries of a KARFile.
See the example karxml file at the bottom of
...
Aaron Aaron
06:02 PM Bug #4701: Persistent Database needed in Core Module for LSID generation to prevent namespace updating on clean-cache
Of those two options, I definitely vote for a 3rd database. One of the main reasons for the DB overhaul was to suppor... Derik Barseghian
04:53 PM Bug #4701 (Resolved): Persistent Database needed in Core Module for LSID generation to prevent namespace updating on clean-cache
The need to use a database table to generate new LSID revisions (ref bug 4633) spawned a new database table called LS... Aaron Aaron
05:13 PM Bug #4463: Grey out component names in the component library that can not be dragged to the canvas
It is unlikely we will need/want to do this in the future. Closing this bug. Aaron Aaron
05:07 PM Bug #4317: KAR's dependencies on modules need to be included in KAR metadata
A KAR's module dependencies are now included in the KAR manifest file and are accessible through the KARFile class. Aaron Aaron
05:04 PM Bug #1750: Allow KAR files to include jar/class files
It was agreed that the solution to this is to create a java utility for converting KAR files to Kepler modules. See ... Aaron Aaron
05:03 PM Bug #4702 (Resolved): KAR to module conversion utility
Create a utility that converts KAR files (version 1.0 and 2.0) to Kepler modules.
This was previously bug 1750.
Aaron Aaron
04:54 PM Bug #4633: LSID conflicts
Closing this bug. Opening a new bug (bug 4701) with the one remaining task of moving the LSID_GENERATOR table. Aaron Aaron
04:21 PM Bug #4538: problems with KARs that contain tags from default ontologies
Seems like this got fixed a while back. Closing unless there are any objections. Sean Riddle

01/27/2010

03:24 PM Bug #4682: losing reports from KARs
Technically, I think the bug is fixed as of r22615. However, the fix only addresses the swapping reports half of the... Oliver Soong
12:32 PM Bug #4682: losing reports from KARs
I'm not seeing it called for any workflow that i open via a KAR.
It is called when I open a MOML xml file.
Something...
ben leinfelder
11:46 AM Bug #4682: losing reports from KARs
I'm finally able to reproduce the bug. It requires a KAR file with a report that has a local LSID (i.e., the workflo... Oliver Soong
02:40 PM Bug #4700 (In Progress): Reminder Update Wiki information to reflect Kepler 2.0 release.
Update the information on the Wiki to include changes to Kepler in the 2.0 release. Remove any information in the Wik... debi staggs
02:39 PM Bug #4699 (In Progress): Reminder Bug Update FAQ to reflect Kepler 2.0 release
Update the FAQ with the 2.0 release features. Remove any statements in the FAQ that are outdated or no longer accurate. debi staggs
02:35 PM Bug #4458: test for moving kepler directory
Changing this to an enhancement request since this bug is for creating a test. Derik Barseghian
11:49 AM Bug #4697: Semantic Annotation does not increment LSID revision
This is more general. Semantically annotating a workflow does not increment the workflow's lsid revision. Derik Barseghian
05:30 PM Bug #4697 (Resolved): Semantic Annotation does not increment LSID revision
If user gives a semantic annotation during Save Archive in ExportArchiveAction (see FIXME), I notice the LSID doesn't... Derik Barseghian
11:28 AM Bug #4304: Progress monitor is blank when authenticating for KAR upload
Progress monitor has been replaced with a change in the mouse cursor to indicate that authentication is occurring. Sean Riddle
07:46 PM Bug #4696: Title bar doesn't refresh after rename during Save Archive
bug in comment 1 is sort of fixed with r22611. Rename from canvas context menu will work (provenance will rename past... Derik Barseghian
06:46 PM Bug #4696: Title bar doesn't refresh after rename during Save Archive
Additional similar bug#2: if you Save Archive, rename, cancel on the save to kar, the workflow and title are renamed,... Derik Barseghian
06:10 PM Bug #4696: Title bar doesn't refresh after rename during Save Archive
original bug fixed in r22610.
additional bug described in comment 1 not yet fixed.
Derik Barseghian
05:16 PM Bug #4696: Title bar doesn't refresh after rename during Save Archive
Also when you use the new Rename context menu item on the canvas, the listeners aren't notified, so the title bar ref... Derik Barseghian
04:33 PM Bug #4696 (Resolved): Title bar doesn't refresh after rename during Save Archive
If you File => Save Archive, rename your Untitled workflow, and then cancel on the save to kar dialog, the workflow's... Derik Barseghian
05:37 PM Bug #4194: Kepler should have the Continous and Modal domains
Done! The Continuous actors are available. It is possible to create
a Modal model.
See
https://kepler-project.org...
Christopher Brooks
05:21 PM Bug #4673: past runs with workflows that get renamed don't reflect this
Fixed in r22607 Derik Barseghian

01/26/2010

02:52 AM Bug #4630: creating and changing relations don't trigger LSID bump
Workflow LSID revision is now being updated when creating, editing, deleting, or moving relations. It is somewhat no... Aaron Aaron
04:57 PM Bug #4304: Progress monitor is blank when authenticating for KAR upload
I don't think we will have this progress monitor anymore. The new solution is to use the wait cursor instead which i... Aaron Aaron
04:45 PM Bug #4570: dangling file handle for KARs
Fixed now, just needed to call the close() method on the KARFile after opening it. Aaron Aaron

01/25/2010

02:38 PM Bug #4010: RExpression2 - tracking for backwards compatibility
Stupid Responses (SRs):
SR1 - you can change the "environment.txt" file in the r module to reflect the correct R_HOME...
ben leinfelder
02:26 PM Bug #4010: RExpression2 - tracking for backwards compatibility
Ben ... sorry to ask stupid questions (SQs).
SQ1: I just removed R 2.9.0 from my system and now have R 2.10.1. Ho...
Tom Parris
11:23 AM Bug #4673: past runs with workflows that get renamed don't reflect this
The reason there's the problem in 2) is that ExportArchiveAction does not notify KeplerGraphFrameSave listeners like ... Derik Barseghian
11:14 AM Bug #4538: problems with KARs that contain tags from default ontologies
Things had changed and the concept_label was no longer in the tags in the workflowRun. Sean added the concept_label b... Derik Barseghian
11:06 AM Bug #4479: Error messages are not imported during run import
This was fixed in r21366. Derik Barseghian
08:08 PM Bug #4380: Removing LocalRepository does not remove actors from Ontologies
(In reply to comment #2)
> Fixed in rev 22588
*rev 22589
Aaron Aaron
08:07 PM Bug #4380: Removing LocalRepository does not remove actors from Ontologies
Fixed in rev 22588 Aaron Aaron
04:23 PM Bug #4362: component search performance
Since the search has been integrated into the Library Index and the Library no longer uses the ActorMetadata objects ... Aaron Aaron
04:18 PM Bug #4629: Undo doesn't roll LSID revision
Undo and redo actions now roll the revision of the lsid in workflows. As of rev 22588 Aaron Aaron

01/24/2010

12:34 PM Bug #4581: Handle multiple revisions of components in the Component Library
This solution is working well now. Closing this bug. Aaron Aaron

01/22/2010

03:30 PM Bug #4694 (Resolved): workflow run manager - differentiate imported runs
Eric requests a way to differentiate imported runs ("husk runs") from those you actually ran. One idea is to change t... Derik Barseghian
11:03 AM Bug #4693 (In Progress): Ability to save just a report instance
Eric requests the ability to easily save just the report instance. This should probably be a 1 step process when you'... Derik Barseghian
06:21 PM Bug #4682: losing reports from KARs
I lost another report. I started Kepler, loaded a KAR (that I had just been editing before restarting Kepler), added... Oliver Soong
05:10 PM Bug #4671: cannot export workflow runs when workflow has actors with <> in the names
retargeting to wrp - though perhaps it's a larger kepler issue? ben leinfelder
04:29 PM Bug #4673: past runs with workflows that get renamed don't reflect this
Correction to my last comment:
1) provenace renames past runs if you do a Save As.
2) If you do a Save Archive they o...
Derik Barseghian

01/21/2010

01:59 PM Bug #4689 (Resolved): Export run creates duplicate WorkflowRun files. Exporting it again gives none.
Oliver and I both have this problem after the big KAR change.
Aaron, I think you mentioned being aware of the dupli...
Derik Barseghian
12:29 PM Bug #4686 (Resolved): update copyright statements
all files in the src tree need to either have copyrights added or existing copyrights updated before the release. Chad Berkley
12:13 PM Bug #4685 (Resolved): Create installers
Create the installers for the 2.0 release and pre-releases. Chad Berkley
12:04 PM Bug #4684 (Resolved): Release tracking bug
All the stuff to do before the release. One bug per task blocking this one. Chad Berkley
08:02 PM Bug #4056: create developer documentation for svn configuration.
svnpropcheck expects text files as arguments. Below is a sample use:
bash-3.2$ cd /Users/cxh/src/kepler/util
bash-3...
Christopher Brooks
06:48 PM Bug #4056: create developer documentation for svn configuration.
Thanks Christopher. It looks like I edited my ~/.subversion/config file a long time ago, but eclipse didn't automatic... Derik Barseghian
05:06 PM Bug #4056: create developer documentation for svn configuration.
I have notes about svn configuration at
http://chess.eecs.berkeley.edu/ptexternal/nightly/doc/coding/eclipse.htm#Subv...
Christopher Brooks
04:51 PM Bug #4056: create developer documentation for svn configuration.
I wonder if we should create and ask developers to use a standard svn config file (can't remember how this works)?
Sh...
Derik Barseghian
07:19 PM Bug #4673: past runs with workflows that get renamed don't reflect this
Looks like procedure in comment#2 is an additional problem -- I think provenance only renames prior runs of the same ... Derik Barseghian
05:10 PM Bug #4682 (Resolved): losing reports from KARs
I'm losing reports (still? again? I don't even know anymore). I'm
running r22544, with the modification to RExpre...
ben leinfelder
04:45 PM Bug #4681 (Resolved): Check all file properties before release
See bug#4056 for background.
I think we need to go through all our files before release to make sure the appropria...
Derik Barseghian

01/20/2010

03:54 PM Bug #4631: Could use some way to change the "workflow name" stored in a KAR
Not exactly a duplicate of 4334, but that solves this. Oliver Soong
12:08 PM Bug #4126: Allow user CLASSPATH to be loaded in Kepler
This is not an issue with the new build system. Now, it is easy to include necessary jars used by actors or other cod... David Welker
04:47 PM Bug #4673: past runs with workflows that get renamed don't reflect this
Ensure this procedure works as well before marking this bug fixed:
Aaron said:
Does this have something to do with t...
Derik Barseghian
04:45 PM Bug #4679: Workflow Name in Workflow Run Manager is not updated when renaming workflow
dupe of 4673 Derik Barseghian
04:30 PM Bug #4679 (Resolved): Workflow Name in Workflow Run Manager is not updated when renaming workflow
Does this have something to do with the Provenance Database design? Perhaps it can be solved by adding a Name column... Aaron Aaron

01/19/2010

03:14 PM Bug #4664: Fix and/or remove broken unit tests
All current tests now complete successfully. Chad Berkley
03:05 PM Bug #4334: Rename actor from canvas
Quite possibly, can you check? Aaron Aaron
03:02 PM Bug #4334: Rename actor from canvas
Does this also fix 4631 (which might have been a dup)? Oliver Soong
02:10 PM Bug #4334: Rename actor from canvas
I have added "Rename" menu item to the canvas context menu. This allows the user to rename a workflow without having... Aaron Aaron
09:58 AM Bug #4338: need to review usability and gui of module manager
I've finished reviewing this and I think it's working well now. I don't see any real problems with it. getting modu... Chad Berkley

01/15/2010

12:44 PM Bug #4671: cannot export workflow runs when workflow has actors with <> in the names
As a test, locally I changed the method to instead use a momlparser, but unfortunately the same error crops up in Kep... Derik Barseghian
12:39 PM Bug #4671: cannot export workflow runs when workflow has actors with <> in the names
Well, I'm not sure what the restrictions are on actor names other than no dots. I wouldn't mind others, but then the... Oliver Soong
12:17 PM Bug #4671: cannot export workflow runs when workflow has actors with <> in the names
can you just not use those characters in your names in this [heavily-XML-based] application?
I'm mostly being serious.
ben leinfelder
11:57 AM Bug #4671: cannot export workflow runs when workflow has actors with <> in the names
The error I get is:
[Fatal Error] :66:19: The value of attribute "name" associated with an element type "entity" must...
Derik Barseghian
10:52 AM Bug #4671: cannot export workflow runs when workflow has actors with <> in the names
In tpc09, it's nested in one of the composite actors. I think the one towards the bottom called structure/abundance ... Oliver Soong
10:59 PM Bug #4671: cannot export workflow runs when workflow has actors with <> in the names
this was for kruger tpc09?
Where was the actor with the ">" in the name?
This might be a larger ptolemy restriction a...
ben leinfelder
05:25 PM Bug #4671 (Resolved): cannot export workflow runs when workflow has actors with <> in the names
Title says it all. This is at r22494. Oliver Soong
11:58 AM Bug #4388: remove the ptII module
I've added the module-info to ptolemy. The build system now knows where to look for it so the ptII module is no long... Chad Berkley
05:10 PM Bug #4388: remove the ptII module
Reopening this bug because the ptII kepler module should be removed.
I'm all for putting kepler module info into the ...
Christopher Brooks
10:29 AM Bug #4670: svn update fails to update module with modifications
I think I came up with a simpler fix to the original problem. I changed the SVN command that is run to have the --ac... Chad Berkley
10:12 AM Bug #4670: svn update fails to update module with modifications
This is not a bug, this is a feature.
The problem that this feature solves is that when you update and there is a co...
David Welker
09:33 AM Bug #4670: svn update fails to update module with modifications
I successfully reproduced this. Here is what I tried:
cd build-area
ant update
ant update-ptolemy -Drev=head
vim .....
Chad Berkley
04:56 PM Bug #4670 (Resolved): svn update fails to update module with modifications
Under Mac OS 10.5, I ran svn update:
[update-modules] Updating ptII...
[update-modules] svn -r head update /Users...
Christopher Brooks
06:02 PM Bug #4674 (New): WorkflowRunManager search cells are catching tab keys wherever they occur
Basically if you hit the TAB key anywhere in Kepler, the Workflow Run Manager hears it and filters runs. Afaict this ... Derik Barseghian
05:51 PM Bug #4673 (Resolved): past runs with workflows that get renamed don't reflect this
If you export a run that is Unnamed1, you're prompted to give it a workflow name. If you name it, provenance renames ... Derik Barseghian
05:37 PM Bug #4672 (Resolved): Workflow title isn't refreshed during run export workflow rename
If you export a run that's Unnamed1, you're prompted to give the workflow a name. If you give it it a name, finish yo... Derik Barseghian
05:30 PM Bug #4281: ant update produces message about running svn cleanup
Actually, running "svn cleanup" does not fix this under Windows Server 2003.
To create a svn repository, what I did ...
Christopher Brooks
05:00 PM Bug #4669: report layout changes, but text field displays previous content
This sounds like a problem with the text field value not properly being stored in the underlying ReportLayout model.
...
ben leinfelder
04:57 PM Bug #4669: report layout changes, but text field displays previous content
I should also point out that Comment 1 is wrong about only clicking once. The double-click seems to cause a left-rig... Oliver Soong
04:55 PM Bug #4669: report layout changes, but text field displays previous content
Actually, it's even weirder. It only seems to happen with click-drag to select when moving from right to left, but n... Oliver Soong
04:53 PM Bug #4669: report layout changes, but text field displays previous content
Some more information. This seems to only happen if I only click in the text field once while changing it. Double-c... Oliver Soong
04:50 PM Bug #4669 (Resolved): report layout changes, but text field displays previous content
This is at r22494. I create a trivial workflow (SDF only, 1 iteration) and a report with a text field. I enter some... Oliver Soong
04:37 PM Bug #4438: View: label shouldn't appear when there's no view drop-down menu
fixed in r22491. Derik Barseghian

01/14/2010

01:42 PM Bug #1750: Allow KAR files to include jar/class files
This is a controversial design decision and should not be in 2.0.
Including jars in KAR files is NOT a feature. It i...
David Welker
11:04 AM Bug #1750: Allow KAR files to include jar/class files
Umm, you're right. I was triaging bugs and made a couple mistakes. I'll put this back to 2.0. Chad Berkley
08:59 AM Bug #1750: Allow KAR files to include jar/class files
did i miss something yesterday? - we are dropping a feature that was in 1.0.
(In reply to comment #15)
> This can be...
ben leinfelder
11:34 AM Bug #4179: ant jar does not include configs/
I added the configs/ dir to the jar for the common module only. Chad Berkley
10:08 AM Bug #4549: String Replace actor "remembers" previous execution values
[i know you think i didn't test it, but i did...that's confusing since now it is erring for me, too]
How should this ...
ben leinfelder
09:54 AM Bug #4549: String Replace actor "remembers" previous execution values
A test is failing with this change:
------------------ testing $PTII/ptolemy/actor/lib/string/test/auto/StringReplac...
Christopher Brooks
09:39 AM Bug #4549: String Replace actor "remembers" previous execution values
added a check for the channel width.
ran the tests - passed.
committed r56911
Now the actor will not fire if there i...
ben leinfelder
09:57 AM Bug #4480: can't view more than one of workflow editor, report designer, and report viewer at a time
save for later as open... ben leinfelder
09:47 AM Bug #4480: can't view more than one of workflow editor, report designer, and report viewer at a time
This would be part of an entire Kepler UI redesign. ben leinfelder
10:12 PM Bug #4668: Documentation for event-state module
created wiki page with explanation and example code:
https://kepler-project.org/developers/reference/using-event-stat...
ben leinfelder
06:38 PM Bug #4505: NPE from Semantic Search
fixed in r22488, semantic search can return results now. Derik Barseghian
04:31 PM Bug #4505: NPE from Semantic Search
The error for this is now:
java.lang.NullPointerException
at org.kepler.objectmanager.ActorMetadata.getActorAsNamedO...
Derik Barseghian
04:36 PM Bug #4194: Kepler should have the Continous and Modal domains
I can at least get the Continuous domain in place for 2.0.0.
I was looking at how to do this, and I've not yet found...
Christopher Brooks
04:24 PM Bug #4659: Importing run gives a ClassCastException
fixed in r22486.
problem was in WorkflowRun convertStringToWorkflowRun -- derivedFrom attribute was being created as...
Derik Barseghian
04:12 PM Bug #4629: Undo doesn't roll LSID revision
Problems with LSIDs not getting updated properly need to be solved before 2.0.0 Aaron Aaron

01/13/2010

03:58 PM Bug #4503: Suggest Similar Components gives an error
Maybe we should disable this feature for 2.0? Was it in 1.0? Chad Berkley
03:51 PM Bug #4347: Reminder "bug" for manual testing before 2.0 release
will rework this into a release bug Chad Berkley
03:46 PM Bug #4439: reporting displays output for a different actor
oh, neat! ben leinfelder
03:45 PM Bug #4439: reporting displays output for a different actor
It now prints an error message to stdout and in the report for any unresolved references. Daniel Crawl
03:37 PM Bug #4373: Copyright Statements are Inconsistent
Will do this as part of the release process. Chad Berkley
03:36 PM Bug #4317: KAR's dependencies on modules need to be included in KAR metadata
this can be pushed to post 2.0 Chad Berkley
03:35 PM Bug #4483: Module dependencies in MoML files
This visual icon is in the tree. Downloading now works when you right click on the item and tell it to get the depen... Chad Berkley
03:31 PM Bug #1750: Allow KAR files to include jar/class files
This can be talked about further after the 2.0 release. Chad Berkley
03:30 PM Bug #4322: Attempting to save changes to a workflow saved in a KAR file fails
Fix this after 4515 is done. Chad Berkley
03:28 PM Bug #4341: rearrange the actors module into smaller modules
pushing this to post-2.0. At this point, I don't think 2.0 should require this. Chad Berkley
03:25 PM Bug #4304: Progress monitor is blank when authenticating for KAR upload
this should be fixed with the kar saving functionality that aaron is adding (bug 4515) Chad Berkley
03:24 PM Bug #4668 (Resolved): Documentation for event-state module
Need developer-level documentation for how to use the even-state module in other modules. ben leinfelder
02:52 PM Bug #4642: memory usage & slowdowns
I've done some refactoring of the WRM so that I'm no longer creating so many runs so frequently -- hopefully this wil... Derik Barseghian
02:51 PM Bug #3976: Update Documentation for 2.0 release
Assigning to Debi. Chad Berkley
02:51 PM Bug #4316: re-evaluate how kars are managed in the build and runtime
KARs will not be checked into SVN for the forseable future. Closing this bug. We can reopen it at a later time if t... Chad Berkley
02:49 PM Bug #4667 (In Progress): New documentation on modules and extension points for modules
Should include information on the config system, karentryhandlers, viewpanes,
adding icons to the config, etc. See ...
Chad Berkley
02:45 PM Bug #4666 (Resolved): identify problems with converting .kepler-1.0 to .kepler-2.0
Need to go through the kepler 1.0 version of .kepler and identify any problem areas that might crop up in converting ... Chad Berkley
02:39 PM Bug #4665 (Resolved): Add unit tests for kar functionality
Build a junit test framework for at least the basic functionality of the KAR subsystem. Chad Berkley
02:37 PM Bug #4664 (Resolved): Fix and/or remove broken unit tests
Go through the unit test suite and get all tests to run. remove any tests that are no longer relevant and make the r... Chad Berkley
02:33 PM Bug #4506: Exception is thrown during workflow execution
Seems like a workflow bug, not a kepler bug. Chad Berkley
02:30 PM Bug #4482: JRE Exception Access Violations
probably machine specific. not a kepler bug. Chad Berkley
02:28 PM Bug #4350: Integrity constraint violation - no parent SYS_FK_59 table - during _first_ startup
The cache directory just needs to be cleaned. Chad Berkley
02:09 PM Bug #4340: Resolve KAR file/module format
We have now done this, as far as the 2.0 release is concerned. the KAR and module format will remain separate with k... Chad Berkley
12:28 PM Bug #4634: run archive causes NPE when building local repository
Oh, the part about archives not showing up is from bug 4559. This might have gotten fixed by something else along th... Oliver Soong
12:06 PM Bug #4634: run archive causes NPE when building local repository
Disclaimer: I haven't used the Build button often.
I just tried this on r22478, and don't get the error, but if the...
Derik Barseghian
12:17 PM Bug #4587: Assure a clean cache when module configuration changes
Fixed in r22479. Sean Riddle
10:41 AM Bug #4179: ant jar does not include configs/
I found another bug (feature maybe?) with the jar task. the resources/configuration directory gets put at the root o... Chad Berkley
11:33 PM Bug #4549: String Replace actor "remembers" previous execution values
Unfortunately, this fix causes one of the tests to fail:
------------------ testing $PTII/ptolemy/actor/lib/string/t...
Christopher Brooks
11:11 PM Bug #4549: String Replace actor "remembers" previous execution values
changed in the ptolemy code to not fire the old token if a new one did not exist ben leinfelder
10:15 PM Bug #4311: Build system appears to lock if there is a conflict upon update
I have looked into the CommandLine.java class more with Oliver Soong, and am going to try to hook process so that one... David Welker
08:24 PM Bug #4311: Build system appears to lock if there is a conflict upon update
Fixed. Now, modules that have local modifications are not updated and an appropriate WARNING is given.
As far as Oli...
David Welker
05:18 PM Bug #4663: Tag shows up in workflow moml when it shouldn't
I suspect this is to do with the building of the KAR, probably with the way the workflow is fetched out of the Object... Derik Barseghian
04:54 PM Bug #4663 (Resolved): Tag shows up in workflow moml when it shouldn't
This may not be a tagging bug but a bug in a provenance query or in KAR building -- sometimes a tag that shouldn't be... Derik Barseghian
05:15 PM Bug #4559: local repositories not showing up in components tree
At this point, KAR files in local repositories are not ending up in the components tree when they are first added. T... Oliver Soong
05:10 PM Bug #4560: can't remove local repositories
And closing. Oliver Soong
05:09 PM Bug #4560: can't remove local repositories
This seems to work now. Oliver Soong
05:04 PM Bug #4570: dangling file handle for KARs
Ben said to do this. Oliver Soong
04:16 PM Bug #4656: Build system needs javadocs
I added javadocs to all build-area classes. Did some minor refactoring and
reformatting as well. Rendered Javadocs ...
Chad Berkley
04:11 PM Bug #4662 (Resolved): roll revision vs. new object ID
My current auth namespace is 3371. I have a file with an old auth namespace of 1347. If I open the XML file, view L... Oliver Soong

01/12/2010

11:16 AM Bug #4660 (Resolved): Clicking in a section header highlights all the text.
I have a section header with some text in it and I want to change that text. If I click on it, it highlights all of ... Oliver Soong
05:49 PM Bug #4659: Importing run gives a ClassCastException
I don't think it's related, but I'll keep that in mind when I look into this.
To replicate:
- change-to and launch ...
Derik Barseghian

01/11/2010

01:44 PM Bug #4659: Importing run gives a ClassCastException
The could be from my fix to bug #4547
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4547
The change is that Doc...
Christopher Brooks
12:29 PM Bug #4659 (Resolved): Importing run gives a ClassCastException
If you try to Open Archive a KAR containing a workflow run that needs to be added to provenance, you get a ClassCastE... Derik Barseghian
12:26 PM Bug #4516: Module Manager needs ability to install modules needed by KARs
I changed this around a bunch so it is now done in the GUI instead of on kepler startup. When a module-dependencies:... Chad Berkley
08:39 AM Bug #4439: reporting displays output for a different actor
I'm thinking you'd still want the report to render if al but one reference were valid, right? Maybe just a warning th... ben leinfelder
08:36 AM Bug #4439: reporting displays output for a different actor
Why not just check that everything mentioned in the ROML exists just before you create the report (i.e., after execut... Oliver Soong
10:24 PM Bug #4439: reporting displays output for a different actor
i suppose we could be listening for the MOML change request that deletes actors/ports/parameters that are referenced ... ben leinfelder
12:39 AM Bug #4652: clicking rows in the wrm no longer updates the report designer/viewer
no difference, I simply missed checking in part of the fix initially Derik Barseghian
10:21 PM Bug #4652: clicking rows in the wrm no longer updates the report designer/viewer
what was the difference for linux? ben leinfelder
11:03 PM Bug #4547: documentation for file parameter includes an error
Fixed. Changed DocAttribute.description from a StringParameter to a StringAttribute so that Kepler does not report er... Christopher Brooks

01/09/2010

06:42 PM Bug #4652: clicking rows in the wrm no longer updates the report designer/viewer
fixed in r22437. Derik Barseghian
06:27 PM Bug #4652: clicking rows in the wrm no longer updates the report designer/viewer
r22436 fixed this on my mac build, but it's not working on linux... Derik Barseghian

01/08/2010

03:32 PM Bug #4439: reporting displays output for a different actor
I've updated provenance to handle these types of renames.
It might be nice if reporting displayed an error or warnin...
Daniel Crawl
02:16 PM Bug #4311: Build system appears to lock if there is a conflict upon update
I'm not clear why option 2 is so complicated. Just pass stdin, stdout, and stderr from svn to ant. I don't expect a... Oliver Soong
01:49 PM Bug #4311: Build system appears to lock if there is a conflict upon update
If an error is printed, I'd be fine with it. Right now, it appears to hang and does not give any further output. Chad Berkley
01:41 PM Bug #4311: Build system appears to lock if there is a conflict upon update
A couple of things. First, there are two alternative things we could mean by "fixing" this issue: (1) Print out the e... David Welker
12:45 PM Bug #4311: Build system appears to lock if there is a conflict upon update
I still don't think it really affects the user experience, but it's happened to me enough times to be annoying so I c... Chad Berkley
12:38 PM Bug #4311: Build system appears to lock if there is a conflict upon update
I was curious what the basis of your opinion that this should be done before 2.0 is? This is functionality to make li... David Welker
10:15 AM Bug #4311: Build system appears to lock if there is a conflict upon update
This bug has happened to me exactly the way that Oliver has described on many occasions. It should be fixed prior to... Chad Berkley
09:52 AM Bug #4311: Build system appears to lock if there is a conflict upon update
The problem is that it never fails to complete. Normally on a conflict, svn outputs some information and blocks for ... Oliver Soong
08:12 PM Bug #4311: Build system appears to lock if there is a conflict upon update
Are you saying that when the update failed to complete, it did not say why? That is unusual. Can you reproduce this e... David Welker
07:57 PM Bug #4311: Build system appears to lock if there is a conflict upon update
I'm not so sure it's a good idea to ignore this. This happened to Mark, Regetz, and me. None of us had made any loc... Oliver Soong
07:24 PM Bug #4311: Build system appears to lock if there is a conflict upon update
The solution to this problem is not in the build system. You should do the update manually if you have made changes. David Welker
01:46 PM Bug #4653: error message says "data cloumn"
search. replace. done. ben leinfelder
05:13 PM Bug #4653 (Resolved): error message says "data cloumn"
The data cloumn didn't match head column Oliver Soong
01:37 PM Bug #4655: data packages are suddenly unusable
dan fixed it ben leinfelder
12:39 PM Bug #4655: data packages are suddenly unusable
the cached data files are set as a data source for HSQL tables (SET TEXT....SOURCE) - but the path to the hsqldb was ... ben leinfelder
06:23 PM Bug #4655 (Resolved): data packages are suddenly unusable
For some reason, EML 2 Dataset actors are not outputting any tokens for most output formats. The data exists at .kep... Oliver Soong
12:53 PM Bug #4516: Module Manager needs ability to install modules needed by KARs
tagged my current work here: https://code.kepler-project.org/code/kepler/tags/berkley-20100108-checkpoint-kar_can_dow... Chad Berkley
12:49 PM Bug #4516: Module Manager needs ability to install modules needed by KARs
There should always be user input when downloading new modules. Imagine that you are running the Kepler suite, then ... Aaron Aaron
12:40 PM Bug #4516: Module Manager needs ability to install modules needed by KARs
Couple more issues here:
* I should have used the MANIFEST/dependsOnModule attribute instead of including a modules....
Chad Berkley
12:19 PM Bug #4516: Module Manager needs ability to install modules needed by KARs
How does appending modules to modules.txt ensure the same environment that an actor was running in?
This is going to...
David Welker
11:59 AM Bug #4516: Module Manager needs ability to install modules needed by KARs
The active modules.txt file is now appended with any information from the kar's modules.txt file. Note that this cou... Chad Berkley
10:58 AM Bug #4516: Module Manager needs ability to install modules needed by KARs
Kar files can now include a modules.txt file which will be processed by the ModuleDownloader. Any modules/suites in ... Chad Berkley
11:02 AM Bug #4656 (Resolved): Build system needs javadocs
The build system is lacking a lot of documentation. Javadocs should be added for (at least) all public methods and c... Chad Berkley
10:19 AM Bug #4108: Do more extenstive testing before designating a revision of Ptolemy as stable
I don't think this bug should be closed. I'm changing it to be a lower priority but reopening it. I think that ther... Chad Berkley
07:22 PM Bug #4108: Do more extenstive testing before designating a revision of Ptolemy as stable
Additional testing before designating a version of Ptolemy as "stable" is unnecessary. Closing this bug. David Welker
07:59 PM Bug #4388: remove the ptII module
There is no good way to remove the ptII suite without changes to the ptolemy module. This is not currently in the car... David Welker
07:52 PM Bug #4281: ant update produces message about running svn cleanup
I agree that this bug should be closed. "ant update" is a convenience method which allows one to avoid having to run ... David Welker
07:47 PM Bug #4280: ant task fails under Windows
Again, "ant task" is a convenience short cut for:
ant -f kepler-tasks.xml
Therefore, I do not intend on devoting an...
David Welker
07:44 PM Bug #4264: ant task fails if there are java compilation errors
"ant task" is a convenience method. It never needs to be invoked.
If "ant task" fails, the solution is to type:
ant...
David Welker
07:40 PM Bug #4260: Add a test suite for the build system
I think this is overkill and not a good use of resources. Problems in the build system tend to be detected immediatel... David Welker
07:21 PM Bug #4202: typos in modules.txt are ignored
The contents of modules.txt is now verified. Missing/mispelled modules now cause an error message to appear. David Welker
07:18 PM Bug #4353: Update publishing to allow for patches.
This is now implemented. David Welker
07:14 PM Bug #4351: ant netbans fails due to missing file
This bug no longer occurs. David Welker
07:12 PM Bug #4286: Changes to the GUI before 2.0
There are only minor changes left before 2.0. This bug is no longer needed. David Welker
07:03 PM Bug #4082: New user guide section on modules/module manager
Please assign bugs to welker4kepler@gmail.com when assigning bugs to me only.
I have documented module manager funct...
David Welker
07:00 PM Bug #4382: Remove switching between kepler and ptolemy
It is no longer possible to launch Ptolemy from the Kepler module manager. This reinforces the separateness of the tw... David Welker
06:58 PM Bug #4650: module manager tries to download already downloaded modules
Modules that are retrieved are not removed from the available modules pane. Instead, they are added to the "Downloade... David Welker
06:09 PM Bug #4654: searching KNB through Kepler returns many console errors and caching fails
It's looking like I managed to completely screw up my cache. A clean-cache fixed things.
Basically, I was signing i...
Oliver Soong
05:44 PM Bug #4654 (Resolved): searching KNB through Kepler returns many console errors and caching fails
This is at r22407 under linux. Things seem to work, but the cache content is all blank (files are all of size 0). Oliver Soong
04:55 PM Bug #4652 (Resolved): clicking rows in the wrm no longer updates the report designer/viewer
If I have multiple entries in the wrm and I click on different rows, the report designer and viewer no longer automat... Oliver Soong

01/07/2010

11:20 AM Bug #4650 (Resolved): module manager tries to download already downloaded modules
After downloading a module, that module should be removed from the "available modules" list. If a user tries to down... Chad Berkley
10:01 AM Bug #4516: Module Manager needs ability to install modules needed by KARs
I've now split the module manager into two modules. module-manager now has basic classes for downloading modules. m... Chad Berkley

01/06/2010

11:36 AM Bug #4161: Develop kepler workflow execution engine
installed on my local system - did a roundtrip:
-upload workflow+report
-schedule
-wait
-view PDF report when complet...
ben leinfelder
04:08 PM Bug #4161: Develop kepler workflow execution engine
stylesheet issue on the Metacat side of things -- now fixed. ben leinfelder

01/05/2010

03:09 PM Bug #4648 (Resolved): Create classes to find and display any available documentation for installed modules or suites.
Create classes to find and display the available documentation for installed modules or suites. debi staggs
03:06 PM Bug #4647 (Resolved): Write documentation for Reporting in the style of Kepler Docs
Write the user documentation for the WRP suite, using the same style as the rest of the Kepler documentation. debi staggs
11:40 AM Bug #4161: Develop kepler workflow execution engine
script-based execution still works. There's a slight problem on the Metacat side for the first MOML DTD...but that's ... ben leinfelder
11:31 AM Bug #4538: problems with KARs that contain tags from default ontologies
(In reply to comment #2)
> this looks wrong:
> <property name="semanticType" class="org.kepler.sms.SemanticType"
> va...
Sean Riddle
10:09 AM Bug #4538: problems with KARs that contain tags from default ontologies
this looks wrong:
<property name="semanticType" class="org.kepler.sms.SemanticType"
value="urn:lsid:lsid.ecoinformati...
ben leinfelder
10:05 AM Bug #4453: tags don't show up in snow leopard (10.6)
this is working for me on snow leopard ben leinfelder
10:04 AM Bug #4480: can't view more than one of workflow editor, report designer, and report viewer at a time
retargeting to post-2/wrp ben leinfelder
09:43 AM Bug #4618: First export of a run doesn't yield KAR with ROML
in the name of upcoming code freeze, I'm thinking this can be closed. ben leinfelder

01/04/2010

02:47 PM Bug #4516: Module Manager needs ability to install modules needed by KARs
I added a karEntryHandler for modules.txt files. I'm going to add a method to the module manager sot hat the entryHa... Chad Berkley

01/03/2010

12:26 PM Bug #4547: documentation for file parameter includes an error
Viewing the documentation for FileParameter works fine in the ptII tree,
but fails in Kepler, probably because of som...
Christopher Brooks
 

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