Activity
From 10/01/2009 to 10/30/2009
10/30/2009
- 04:49 PM Bug #4476: Tagging / Workflow Run Manager interaction problems
- Tagging all selected rows sounds more desirable to me. It would be common for someone to run a model a bunch of time...
- 04:17 PM Bug #4476: Tagging / Workflow Run Manager interaction problems
- An easy solution for now would be to disable tagging (probably changing the displayed tagging context to something li...
- 04:14 PM Bug #4476: Tagging / Workflow Run Manager interaction problems
- Looks like Sean has fixed #1.
I've fixed #3.
#2 still a problem. - 04:25 PM Bug #4518 (Resolved): Workflow Run Manager - no imported run tags
- If you export a run that has tags into a kar, then delete that run from the WRM, then open that kar, the imported run...
10/29/2009
- 03:12 PM Bug #4506: Exception is thrown during workflow execution
- If it comes to the use case - yes and no.
It fails during execution of the workflow that combines PN and DDF directo... - 01:39 PM Bug #4514: Files are being saved in the Kepler installation directory
- There are two options here, keep the configuration directory in the installation directory and save the other files t...
- 12:05 PM Bug #4514 (Resolved): Files are being saved in the Kepler installation directory
- There are still files and directories being saved, at runtime, to the Kepler installation directory. These files nee...
- 01:33 PM Bug #4324: ptII/module-info/revision.txt not being updated
- Working again. I'll monitor this to make sure it keeps working.
- 12:46 PM Bug #4324: ptII/module-info/revision.txt not being updated
- My cron job has, for some reason, decided not to find ant. I'm working with Nick on figuring this out.
- 01:30 PM Bug #4273: Ctrl+E operates on mouse position, not selection
- Very minor, moving to post 2.0.
- 01:29 PM Bug #4202: typos in modules.txt are ignored
- Not critical for users so moving to post 2.0.
- 01:27 PM Bug #4430: hsql database name and port in Kepler should be configurable
- Not critical for users so moving to post 2.0.
- 01:25 PM Bug #4354: Enable the build system to work on multiple SCM systems.
- Not critical for users so moving to post 2.0.
- 01:25 PM Bug #4339: build system needs to provide more information on modules
- Not critical to the user experience in kepler, so moving to post 2.0
- 01:24 PM Bug #4097: here are some new svg icons for actors
- Punting on this until after 2.0 since it is not critical.
- 01:18 PM Bug #4311: Build system appears to lock if there is a conflict upon update
- pushing to post 2.0 since this does not affect the user experience.
- 01:15 PM Bug #4153: report-overrides
- since this does not affect the user experience, I'm pushing this to post 2.0
- 01:13 PM Bug #4246: Reorganize code in util, core and gui modules
- Since this is mostly done and will not effect the user experience of kepler 2.0, i'm pushing this to a post-2.0 miles...
- 01:12 PM Bug #3948: Create new configuration system supporting modules
- The configuration system is now 99% done with only minor tweaks needed. I am still finding and adding utility method...
- 12:18 PM Bug #4517 (Resolved): Verify that the search capabilities work
- As per the roadmap, search capability requirements include:
* local search of direstories
* remote search of repo... - 12:15 PM Bug #4516 (Resolved): Module Manager needs ability to install modules needed by KARs
- The roadmap specifies that the module manager should be able to automatically install modules needed by a specific KA...
- 12:12 PM Bug #4515 (Resolved): Finish and Document the Save/Open KAR file functionality
- We need to finish the save/open functionality as listed in the kepler roadmap. This functionality should also be doc...
- 10:43 AM Bug #4513 (Resolved): On the PC the paint transparency for buttons doesn't redraw correctly
- Only on the PC, the buttons that have semi-transparent paint end up showing some of the text strings from tables in t...
10/28/2009
- 03:43 PM Bug #4512 (Resolved): missing entries with multiple copies of the same KAR file in a single repository
- Things don't seem to work right if I have multiple copies of the same KAR file in a single local repository. I think...
- 03:30 PM Bug #4509: Report instance not being serialized with Save Archive
- My mistake, the pdf shouldn't be saved with Save Archive since it's specific to an instance.
- 01:54 PM Bug #4511: There are 2 toolbars in the Kepler main window
- That is correct. I think the tag entry bar on the main toolbar does not look particularly cluttered, but putting tags...
- 01:50 PM Bug #4511: There are 2 toolbars in the Kepler main window
- So there's a tags toolbar and the regular toolbar, and the tags menu is on the regular toolbar but the tags themselve...
- 01:49 PM Bug #4511: There are 2 toolbars in the Kepler main window
- That's where tags go. If you add a tag, the toolbar gets sized appropriately.
- 01:46 PM Bug #4511 (Resolved): There are 2 toolbars in the Kepler main window
- There are 2 toolbars in the Kepler main window, one of which is empty. I've seen this using wrp on Windows and linux...
- 12:24 PM Bug #4510 (Resolved): can't add local repository if its name begins with the name of another local repository
- If I've added C:\Documents and Settings\soong\Desktop\kruger as a local repository, I can't add C:\Documents and Sett...
- 11:07 AM Bug #4504: Semantic Type Browser
- This is no longer happening.
10/27/2009
- 05:58 PM Bug #4509 (Resolved): Report instance not being serialized with Save Archive
- In WRP it looks like the report instance (pdf) is no longer being serialized into the KAR when you File => Save Archive.
- 05:05 PM Bug #4508: report viewer should listen for executions to finish
- added handling for the event being broadcast by reporting
- 04:27 PM Bug #4508 (Resolved): report viewer should listen for executions to finish
- After running a workflow in the report viewer, the user must "change" to the report viewer before the report is updat...
- 04:25 PM Bug #4507 (Resolved): report designer losing content when there are too many items
- If I have a lot of items in the report designer, the scroll bar seems to be too short for the content. Eventually, t...
- 02:20 PM Bug #4506: Exception is thrown during workflow execution
- Is there a test case?
- 01:46 PM Bug #4506 (Resolved): Exception is thrown during workflow execution
- Within PN like workflow it seems that one thread iterates through the hashmap while other one modifies the data of th...
- 01:14 PM Bug #4505 (Resolved): NPE from Semantic Search
- On os X or linux w/ the kepler suite, I get an NPE when I try to run a search in the Semantic Search dialog:
... - 01:06 PM Bug #4504 (Resolved): Semantic Type Browser
- On os X 10.5 w/ the wrp suite I get an error when I select an ontology in the Semantic Type Browser (right click on c...
- 12:33 PM Bug #4503 (Resolved): Suggest Similar Components gives an error
- If I right click on an actor on canvas and select Suggest => Similar Components, I get an NPE. This happens in the ke...
10/22/2009
- 04:13 PM Bug #4483: Module dependencies in MoML files
- I've implemented and checked in a prototype of solution 1. At the moment, it only solves the original bug if you cle...
- 03:27 PM Bug #4483: Module dependencies in MoML files
- If you are going to implement a temporary solution, I think you should instead
just save the current active configura... - 02:47 PM Bug #4483: Module dependencies in MoML files
- Yes, OSGi allows dependencies to span multiple versions. Definitely read the OSGi spec if you haven't already. Woul...
- 02:39 PM Bug #4483: Module dependencies in MoML files
- Besides OSGi, another technology to consider for inspiration is Project Jigsaw. Check out this link here for more inf...
- 02:19 PM Bug #4483: Module dependencies in MoML files
- Hi Aaron,
I think it is an interesting idea.
So, you are basically saying that when an actor is added to the workfl... - 01:00 PM Bug #4483: Module dependencies in MoML files
- David, what do you think about putting the responsibility not on an automated class/module detection system or on the...
- 12:56 PM Bug #4483: Module dependencies in MoML files
- Your point about overrides is not correct. If you are using a module that includes an override and your workflow uses...
- 12:33 PM Bug #4483: Module dependencies in MoML files
- a class-based decision about which modules are required won't work in cases where we are using class overrides...
- 12:30 PM Bug #4483: Module dependencies in MoML files
- Good point. But this can be solved by simply making the current active configuration the default. If the workflow eng...
- 12:15 PM Bug #4483: Module dependencies in MoML files
- Storing the active module configuration in the kar would certainly do the trick. I think it may be too restrictive t...
- 02:48 PM Bug #4447: Change Icon for Dynamic Report Items
- Changed this to use the actor icon for now, since that is visually associated with the workflow.
- 02:47 PM Bug #4445: Fix white backgrounds for button images
- This is now fixed, so that the backgrounds are transparent.
- 11:46 AM Bug #4481: KNB authentication and pulling data
- i've added the endpoint to the name of the EML datasource so that they both show in the result set if you have both s...
- 09:23 AM Bug #4481: KNB authentication and pulling data
- What do you think it _should_ look like when you end up searching what are essentially the same sources? Right now th...
10/21/2009
- 05:47 PM Bug #4481: KNB authentication and pulling data
- (In reply to comment #5)
> That, uh, would be because you apparently aren't in the kruger-tpc group that
> has access... - 11:27 AM Bug #4481: KNB authentication and pulling data
- That, uh, would be because you apparently aren't in the kruger-tpc group that has access... Regetz?
- 11:19 AM Bug #4481: KNB authentication and pulling data
- hmm I see. I was not capitalizing Kruger. I'm able to see results using only authenticated interface but now I'm gett...
- 11:10 AM Bug #4481: KNB authentication and pulling data
- What are your search terms? There's a surprise about case. Searching for kruger and Kruger are the same for unauthe...
- 11:02 AM Bug #4481: KNB authentication and pulling data
- I've tried only searching through the authenticated interface sources, but when I do this, I don't receive any result...
- 05:15 PM Bug #4483: Module dependencies in MoML files
- This is the reason I believe we need to store the active module configuration inside the KAR is some manner. Then whe...
- 05:10 PM Bug #4483: Module dependencies in MoML files
- Definitely inelegant. Down the road could it be a serious problem though? Should we disallow even the attempt to op...
- 04:17 PM Bug #4483: Module dependencies in MoML files
- You can still execute the workflow after skipping those class not found exceptions when you open the workflow - but i...
- 04:15 PM Bug #4483 (Resolved): Module dependencies in MoML files
- To reproduce:
Save a KAR from the WRP suite
change to the kepler suite
on startup you see the error:
Error enc... - 03:02 PM Bug #4482: JRE Exception Access Violations
- The problem is likely specific to the machine, graphics card, OS and JVM.
Try upgrading the JRE that you are using.
... - 02:53 PM Bug #4482: JRE Exception Access Violations
- Is there anything I can do to avoid this? I hate saving my work.
- 02:43 PM Bug #4482: JRE Exception Access Violations
- These are Java issues. Both stack traces show the problem being in the
AWT-EventQueue thread.
The one with a usefu... - 02:10 PM Bug #4482 (Resolved): JRE Exception Access Violations
- I've gotten a couple of these. All of Kepler just goes without warning. I have 2 error logs, which I will attach. ...
- 02:00 PM Bug #4478: Configuring ports
- I modified PortConfigurerDialog._apply() so that if the change request fails,
then the port configurer dialog will cl... - 12:04 PM Bug #4478: Configuring ports
- It's frustrating that we can all see the original bug, but can't reliably replicate it.
As for the port swapping thi... - 11:54 AM Bug #4478: Configuring ports
- I was able to reproduce this once, but now I can't.
The problem here is that swapping the name of two ports (or any ... - 10:27 AM Bug #4478: Configuring ports
- I can't seem to go through the actions that replicate it but it happened again yesterday for me and I wasn't doing an...
- 09:41 AM Bug #4478: Configuring ports
- I can't seem to figure out exactly what replicates it. The closest I can come is getting ports to swap relations.
I... - 11:48 AM Bug #4439: reporting displays output for a different actor
- This is looking more and more like an intricacy of Provenance recording. My hunch is that when you first add the RExp...
- 11:30 AM Bug #4359: Model Reference causes String index out of range error in variable setter
- The exception is from the provenance recorder.
- 11:22 AM Bug #4436: composite actor output ports cannot be added to reports
- Did some more investigation:
-we can allow CompositeActor ports to be added to the report layout, but provenance isn'... - 10:28 AM Bug #4441: reporting fails to output figure
- I removed the ProvenanceRecorder and ReportingListener entries from the MOML of the bovine workflow. Then I opened th...
- 09:31 AM Bug #4469: Report Viewer - labels take up too much space
- increased the proportional width of the center (main content) column
- 08:55 AM Bug #4276: RExpression temp files can collide
- included in r21133 now
- 08:53 AM Bug #4276: RExpression temp files can collide
- i had to add an extra display actor so that type checking did not fail on the second run of the workflow, but that's ...
- 08:52 AM Bug #4276: RExpression temp files can collide
- about to submit the fix that oliver provided.
10/20/2009
- 05:38 PM Bug #4478: Configuring ports
- Yep, it looks like a bug. Let me know if you can replicate it. I just tried it in Ptolemy and could not get a stack...
- 10:32 AM Bug #4478: Configuring ports
- I think I'm able to replicate this. FYI, I still have 12506K memory free. I'm not sure it's a memory issue, and I'm...
- 05:25 PM Bug #4470: Report Viewer - labels should be vertically centered
- used this FOP property in the table-cell: display-align="center"
- 05:08 PM Bug #4468: Report Viewer - message to run workflow first
- added MessageHandler.message() if no previous executions were found. i believe that's less intrusive than rearranging...
- 04:56 PM Bug #4474: Report viewer - enable scroll wheels
- this is actually a FOP limitation...this is in the FOP source for PreviewPanel class that we use:
"// FIXME should ad... - 03:59 PM Bug #4471: Report Viewer - remove TOC
- removed from the configuration in WRP suite.
- 03:58 PM Bug #4481: KNB authentication and pulling data
- Shirley, just FYI, the authentication window only pops up when needed. That means the first time you do an authentic...
- 03:09 PM Bug #4481 (Resolved): KNB authentication and pulling data
- In order to sign into KNB with my username and password, I need to clean my cache (no way to manual force the authent...
- 03:58 PM Bug #4472: Report Viewer - use different ViewPane class
- added SingleViewPane class and am now using it in the WRP suite for the Report Viewer view
- 03:33 PM Bug #4466: Report Designer - report layout not shown when opening KARs
- using the event-state module to broadcast to the report layout UI that the report layout model has changed and that i...
10/19/2009
- 01:56 PM Bug #3948: Create new configuration system supporting modules
- I've been working on prototyping and setting up unit tests for the configuration system. There are a few issues I've...
- 01:15 PM Bug #4465: Report Designer - "drag to here" paper should disappear
- 'Drag to here' paper now disappears whenever you drag a report item panel into the report. It also re-appears if you...
- 12:25 PM Bug #4362: component search performance
- Subsequent searches increase library refresh times substantially for large result sets. This is probably due to obje...
- 12:07 PM Bug #4362: component search performance
- After merging the tree the results of the timing analysis are below. The data set used was slightly different from b...
- 12:24 PM Bug #4397: Panel should get selected whenever it has the focus
- Panel is now selected and highlighted whenever it gets the focus.
- 12:24 PM Bug #4464: Report Designer - selection pointer behavior
- - Crosshair point has been removed.
- Arrow turns to finger on hover, except for text areas.
- Clicking anywhere (or ... - 12:21 PM Bug #4402: When a report item is deleted clear the properties window
- What currently happens here, is that when a selected report item is deleted, then that panel disappears, and the sele...
- 11:37 AM Bug #4449: exception when dragging workflow
- I am unable to reproduce this. Can you give more detail on how to reproduce this? What actors you're using, what OS...
- 10:34 AM Bug #4401: Synchronize properties with selected report item
- The properties panel now displays the properties for whichever report item panel is selected.
10/16/2009
- 09:47 PM Bug #4480 (In Progress): can't view more than one of workflow editor, report designer, and report viewer at a time
- It's a little frustrating to have to constantly find that little menu in the upper right hand corner and flip between...
- 09:40 PM Bug #4471: Report Viewer - remove TOC
- I like having that there. It lets me know what I'm looking at in a succinct manner the report designer can't because...
- 12:02 PM Bug #4471 (Resolved): Report Viewer - remove TOC
- the "Report Contents" tab is mostly useless - remove it from this view
- 04:24 PM Bug #4475: Order context menu items consistently
- did that already
- 12:15 PM Bug #4475 (Resolved): Order context menu items consistently
- There is a mix of options, sure, but options that appear across different context menus (ie "Open") should appear in ...
- 04:24 PM Bug #4477: Grey out "undraggables"
- duplicate
*** This bug has been marked as a duplicate of bug 4463 *** - 12:17 PM Bug #4477 (Resolved): Grey out "undraggables"
- In the Components tree we now have non-workflow items (items contained in KARs). These should be marked as different ...
- 04:24 PM Bug #4463: Grey out component names in the component library that can not be dragged to the canvas
- *** Bug 4477 has been marked as a duplicate of this bug. ***
- 04:11 PM Bug #4448: KAREntry dependencies should be observed during KAR Cacheing
- KAR lsid dependencies are now observed during cacheing of KAR contents.
- 04:11 PM Bug #4479 (Resolved): Error messages are not imported during run import
- When importing a WorkfowRun that contains error messages into provenance (creating a 'husk run'), the error messages ...
- 04:07 PM Bug #4462: Component search in remote repositories not working
- The problem here was that org.kepler.objectmanager.repository.EcogridRepositoryLibrarySearcher was set as the _reposi...
- 04:03 PM Bug #4392: Delete KARCacheObject
- KARCacheObject has been deleted.
- 03:53 PM Bug #4478: Configuring ports
- You are probably out of memory, next time use the OS to check how much
memory is being used. Also, look under Tools ... - 03:36 PM Bug #4478 (New): Configuring ports
- When the Kepler dev has been running for a long time (a few hours), there appears to be a problem with the configurin...
- 03:26 PM Bug #4450: Saving workflow in Windows 7
- I shut down kepler and restarted and the problem seems to have disappeared.
(In reply to comment #2)
> I can't repli... - 12:16 PM Bug #4476 (Resolved): Tagging / Workflow Run Manager interaction problems
- There are some problems with Tagging /WRM interaction. We can add/refine this list as we go.
1) Displaying the tag... - 12:08 PM Bug #4474 (Resolved): Report viewer - enable scroll wheels
- The viewer does not respond to scroll wheel actions currently. It should!
- 12:06 PM Bug #4473 (Resolved): Add WRM to bottom of report viewer for navigation
- Still need to design exactly how this will work out.
- 12:05 PM Bug #4472 (Resolved): Report Viewer - use different ViewPane class
- We have too many unused "areas" of the view where it looks like there should be some other window hidden. we just nee...
- 12:00 PM Bug #4470 (Resolved): Report Viewer - labels should be vertically centered
- Instead of appearing at the top of the item that they are labeling, L and R labels should be in the vertical center o...
- 11:58 AM Bug #4469 (Resolved): Report Viewer - labels take up too much space
- left and right labels seem to hog real estate unnecessarily.
- 11:57 AM Bug #4468 (Resolved): Report Viewer - message to run workflow first
- If switched to the report viewer before running a workflow, there should be a message indicating that you must run th...
- 11:54 AM Bug #4467 (Resolved): WRP - restarting/reopening Kepler throws error
- Chad reported this during devLunch:
error restarting/opening Kepler:
"ERROR (org.kepler.reporting.rio.fop.ReportPa... - 11:29 AM Bug #4466 (Resolved): Report Designer - report layout not shown when opening KARs
- If I save a workflow+report layout as a KAR and then attempt to reopen the KAR after restarting Kepler, the report la...
- 11:24 AM Bug #4465 (Resolved): Report Designer - "drag to here" paper should disappear
- After we have one or more items on the report we should hide the helpful "drag here" paper. If all items are deleted ...
- 11:23 AM Bug #4464 (Resolved): Report Designer - selection pointer behavior
- -do not use cross hair pointer anywhere
-arrow turns to finger on hover over any item (anywhere on item except text ... - 11:22 AM Bug #4325: Workflow Run Manager - deleted runs sometimes reappear after Kepler relaunch
- This is fixed, but we need to test to see if the fix degraded performance (so far it seems fine) before closing.
Dan... - 11:19 AM Bug #4161: Develop kepler workflow execution engine
- re-targeting to wrp module, although it may be a 2.0 bug to extend kepler so that it can receive user credentials whe...
- 11:14 AM Bug #4247: Application menu items sometimes disappear on OS X
- The workaround in comment #7 works, and was implemented.
This bug should now serve as a reminder: before wrp-modules... - 11:08 AM Bug #4457: Workflow Run Manager - past Report Layouts don't open
- This bug likely depends on #4132, which I should fix before more work goes into this one.
- 10:55 AM Bug #4231: Workflow Run Manager - failed runs should be highlighted red
- Runs are highlighted a light red now. This can be closed when #4230 is fixed.
- 10:43 AM Bug #4410: Cannot open KARs from arbitrary location on disk
- I vote, and am moving to, wrp-modules-1.0.0 target for this bug.
10/15/2009
- 12:41 PM Bug #4462: Component search in remote repositories not working
- Adding to this bug the feature enhancement of being able to search in multiple remote repositories for components...
- 12:36 PM Bug #4462 (Resolved): Component search in remote repositories not working
- Selecting the checkboxes next to remote repositories from the source button of the component library tab does not inc...
- 12:40 PM Bug #4463: Grey out component names in the component library that can not be dragged to the canvas
- It's my guess that this will be hard to do, but will look into it.
- 12:40 PM Bug #4463 (Resolved): Grey out component names in the component library that can not be dragged to the canvas
- It was suggested that to be more in-line with historical functionality of the component library that the names of com...
- 12:25 PM Bug #4448: KAREntry dependencies should be observed during KAR Cacheing
Turns out the reporting module did not break this as I had assumed previously. It is a good idea to implement this ...- 12:15 PM Bug #4410: Cannot open KARs from arbitrary location on disk
- *** Bug 4381 has been marked as a duplicate of this bug. ***
- 12:15 PM Bug #4381: Open KAR: needs to work when opening from outside the /workflows directory
- marking this as a duplicate, use bug 4410 for further discussion and tracking
*** This bug has been marked as a dupl... - 12:14 PM Bug #4321: Semantic types on workflows saved into library not searchable
- semantic types on workflows are now searchable in the component library, closing this bug, see bug 4362 for further t...
10/14/2009
- 07:41 PM Bug #4458 (New): test for moving kepler directory
- I've been getting an error during the first launch after an ant clean-cache when using the wrp suite, to do with miss...
- 05:52 PM Bug #4431: Export Archive actions should share code where possible
- Because the WorkflowRun KAR is generated without using the ExportArchiveAction functionality from the gui, it is impo...
- 05:43 PM Bug #4457: Workflow Run Manager - past Report Layouts don't open
- We found out today that the ReportLayoutKAREntryHandler was serializing the ReportLayout object to the cache as xml i...
- 05:13 PM Bug #4457 (Resolved): Workflow Run Manager - past Report Layouts don't open
- If in WRP you create a report layout, run the workflow, quit and restart kepler, and then "Open Workflow in New Windo...
- 05:06 PM Bug #4456 (Resolved): Workflow Run Manager in Report Viewer
- If in WRP you change to the Report Viewer and unhide the bottom panel where the Workflow Run Manager normally is, it'...
- 04:50 PM Bug #4455 (Resolved): provenance schema must meet tag storage and search needs
- V8 of the provenance schema must provide for tag storage and search. We will need to search for runs and workflows th...
- 04:41 PM Bug #4454 (Resolved): Workflow Run Manager - ability to display new run tags
- To tag a run, you select the row in the WRM table and enter or select a new tag with the tagging ui. As soon as a run...
- 04:34 PM Bug #4453 (Resolved): tags don't show up in snow leopard (10.6)
- Under snow leopard, you can see the Tags drowndown, but you never see any tags that you add -- they normally appear i...
- 03:54 PM Bug #4450: Saving workflow in Windows 7
- I can't replicate this under my Windows 7 build, either at build 21037 or 21048. This includes calling File->Save As...
- 03:26 PM Bug #4450: Saving workflow in Windows 7
- I don't have access to Windows 7, can you try running a clean Ptolemy build
instead of a Kepler build?
To access the... - 01:58 PM Bug #4450 (Resolved): Saving workflow in Windows 7
- I'm working on a PC with Windows 7. I've created a new workflow and would like to save it so I can open it up later b...
- 01:31 PM Bug #4449 (Resolved): exception when dragging workflow
- I get the following exception when trying to drag a workflow to the canvas from the workflows folder after saving a k...
10/13/2009
- 08:24 PM Bug #4362: component search performance
- Component search is working well now. Speed is very good, results are merged back into one tree, the search is now c...
- 04:47 PM Bug #4448 (Resolved): KAREntry dependencies should be observed during KAR Cacheing
- The lsid dependency mechanism for KAREntries was implemented for opening items from a KAR in the proper order (so a w...
10/12/2009
- 04:55 PM Bug #4362: component search performance
- I've added an advanced button to the Component search that allows the user to configure what they are searching for. ...
- 03:33 PM Bug #4390: Semantic Type tag deletion does not remove component from Ontology in the component library
- close this bug, the component search is only searching over cached items so this no longer applies
- 03:13 PM Bug #4390: Semantic Type tag deletion does not remove component from Ontology in the component library
- I'm a bit unclear on this behavior. If you're saying that the workflow still is
returned on a search for its tag even... - 03:13 PM Bug #4447 (Resolved): Change Icon for Dynamic Report Items
- Make item for Dynamic Report Items more representative of an actor / worflow component icon.
- 01:11 PM Bug #4446: serialized workflowRuns should have use a date standard
- fixed in r55819. Serialized dates look like 2009-10-12T12:56:36.266-07:00. This isn't the most human readable, but it...
- 12:16 PM Bug #4446 (Resolved): serialized workflowRuns should have use a date standard
- Serialized workflowRuns should use a date standard. I'd also like them to be human readable. I'm currently planning t...
10/09/2009
- 03:07 PM Bug #4441: reporting fails to output figure
- Will this workflow ever run on OS X?
- 02:58 PM Bug #4441: reporting fails to output figure
- i'm finding that reporting classes do not seem to be invoked when running this workflow.
have to track it down furthe... - 12:10 PM Bug #4441: reporting fails to output figure
- what are the R package dependencies i need?
"sp"
"rgdal"
etc?
- 09:48 AM Bug #4441: reporting fails to output figure
- is there anything on the console that indicates an error/exception with the FOP rendering?
- 11:48 AM Bug #4399: Highlighting of panel should be more obvious
- The highlighting of the report item panels is now much more obvious. They now change from a very light semi-transpar...
- 11:46 AM Bug #4445 (Resolved): Fix white backgrounds for button images
- The report items now have a semi-transparent green background that makes it easier to distinguish the selected from t...
- 09:43 AM Bug #4440: null pointer exception on viewing report when workflow has not been run
- added check for null last execution id - will not try to continue assembling/rendering report if no execution is found.
- 08:53 AM Bug #4443: gui-free class for provenance store settings
- This is true of the "ReportingListener" as well - it requires that the workflow was authored in the gui (and saved) b...
- 08:48 AM Bug #4436: composite actor output ports cannot be added to reports
- while inconvenient, it sounds like you can still get the Token that passes through this port. sort of a "work around"...
10/08/2009
- 02:59 PM Bug #4362: component search performance
- From meeting with Sean and Derik.
NamedOntClass.getName() does not always return the name that appears in the compon... - 12:29 PM Bug #4443: gui-free class for provenance store settings
- I phrased this awkwardly. When programming I just want an easier way to get a new ProvenanceRecorder for the provenan...
10/07/2009
- 09:30 PM Bug #4443: gui-free class for provenance store settings
- This sounds interesting, but I'm not sure I fully understand it.
Could this be a bit further expanded?
Can one not u... - 05:01 PM Bug #4443 (Resolved): gui-free class for provenance store settings
- It would be nice to have a gui-free class that gives you a new ProvenanceRecorder, created from your currently-in-use...
- 06:57 PM Bug #4325: Workflow Run Manager - deleted runs sometimes reappear after Kepler relaunch
- Decreased write_delay to 100ms in r20931. Needs more testing to check for any performance hit, but so far so good. I ...
- 05:05 PM Bug #4325: Workflow Run Manager - deleted runs sometimes reappear after Kepler relaunch
- Dan and I discussed this, it seems like a likely culprit. I'm going to try to change the write delay to see if it fix...
- 04:43 PM Bug #4325: Workflow Run Manager - deleted runs sometimes reappear after Kepler relaunch
- HSQL delays writing to the file system after updates occur to the database. According to the docs, http://hsqldb.org/...
- 06:40 PM Bug #4444 (Resolved): Reevaluate Cache and Library startup procedure. Restore performance enhancements.
- Need to revisit the startup caching and indexing procedures to see what makes sense with new systems and to restore t...
- 11:04 AM Bug #4362: component search performance
- I have done some timing analysis of the new component search implementation.
There are 3 stages of the new component...
10/06/2009
- 06:31 PM Bug #4441: reporting fails to output figure
- This problem also occurs on linux.
- 05:48 PM Bug #4441 (Resolved): reporting fails to output figure
- In the Bovine TB TPC workflow (tpc01-buffalo-tb.xml), I can't seem to get any figures to show in the reporting. The ...
- 05:32 PM Bug #4440 (Resolved): null pointer exception on viewing report when workflow has not been run
- If I create a workflow and a report, but do not execute the workflow, then try to view it in the viewer, I get a null...
- 05:06 PM Bug #4362: component search performance
- I started to design the second option above this morning to figure out how difficult it would be to do. Turns out it...
- 12:21 AM Bug #4362: component search performance
- Sean and I discussed two possibilities for implementing fast component search today.
One was to use an SQL table tha... - 03:57 PM Bug #4396: Add a drag icon to the report item panels
- I think that the new and improved highlighting eliminates the need for this icon. Also added a cross hair cursor when...
- 03:47 PM Bug #4349: clicking Cancel after Data search gives errors.
- I'm unable to get this bug to occur anymore. I'm not sure what fixed it.
I've tried canceling during or after a sear... - 03:29 PM Bug #4403: Make it more obvious as to where to drag the report items to.
- I have added a background image to the report designer panel that shows an image of a piece of paper, with a folded c...
- 03:27 PM Bug #4399: Highlighting of panel should be more obvious
- I have significantly enhanced the highlighting and selection, but am still in the process of improving it.
- 03:25 PM Bug #4395: Change how we Delete Report Items.
- The way that we delete report items has been changed so that the GUI now shows a small 'delete' button on the right h...
- 03:18 PM Bug #4439 (Resolved): reporting displays output for a different actor
- I can't upload any useful example, so I'll describe how to generate the problem.
1. In Workflow Editor, add 1 SDF ... - 03:06 PM Bug #4438 (Resolved): View: label shouldn't appear when there's no view drop-down menu
- In certain suites (e.g. workflow-run-manager) the "View:" label shows up even though the corresponding drop-down menu...
- 02:36 PM Bug #4434: Workflow Run Manager - add ability to hide/show columns
- Spent some time on this, checked in code that's not called in r20892. It's not working yet and taking awhile to do, s...
- 02:19 PM Bug #4303: LSID Component Search
- The full path is now properly returned in the results. Searching for KeplerLSIDs in the component library is fully o...
- 12:10 AM Bug #4303: LSID Component Search
- This works now, however the tree path to the object is still not quite right. Close this bug after the full path is ...
- 12:26 PM Bug #3948: Create new configuration system supporting modules
- Current configuration files in kepler:
Directory: common/configs/ptolemy/configs/kepler
authServicesBundle.propertie... - 12:26 PM Bug #4436 (Resolved): composite actor output ports cannot be added to reports
- If I have a composite actor with an output port, I cannot add that output port to the report design template. I can ...
10/05/2009
- 12:01 PM Bug #4434 (New): Workflow Run Manager - add ability to hide/show columns
- A user of the workflow run manager should be able to hide or show columns, preferably in the manner shown in this old...
- 11:55 AM Bug #3948: Create new configuration system supporting modules
- Configuration System Requirements agreed upon on 2009.10.02:
1) A module is able to add configuration properties to ... - 11:54 AM Bug #4394: Need to develop requirements for configuration subsystem
- Since requirements are now decided, I will close this bug. All future posts on this subject should be made to bug 3948.
- 11:53 AM Bug #4394: Need to develop requirements for configuration subsystem
- After having a conference call about the requirements for the config system last friday, I think we are in agreement ...
10/02/2009
- 05:43 PM Bug #4327: Workflow Run Manager - ability to import run archives
- This is basically working now, for run-archives as they currently exist (run metadata, workflow, report artifacts).
Y... - 05:17 PM Bug #4346: Searching for Saved Archive (KAR) workflow in default workflow folder gives error
- Recent changes to search should have fixed this. I don't see this error now.
- 05:08 PM Bug #4424: KeplerLSID should implement hashCode
- hashCode is implemented now, there's a JUnit test called KeplerLSIDTest that shows the contains method is working pro...
10/01/2009
- 04:50 PM Bug #4400: Parameters should be able to be dragged onto a report
- Provenance can now look up _workflow_ parameters (not just actor parameters).
- 07:23 AM Bug #4324: ptII/module-info/revision.txt not being updated
- revisions.txt has not been updated since 9/17.
bash-3.2$ svn log ptII/module-info/revision.txt
svn log ptII/module-...
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