Activity
From 01/03/2010 to 02/01/2010
02/01/2010
- 06:24 PM Bug #4697: Semantic Annotation does not increment LSID revision
- Also, if you save a workflow, then semantically annotate it, then close the workflow, you're not prompted to save cha...
- 05:44 PM Bug #4696: Title bar doesn't refresh after rename during Save Archive
- discussed a bit w/ Aaron, Dan and Ben. It seems like a compromise is to assign a new lsid to a workflow when it's ren...
- 04:10 PM Bug #4721 (Resolved): wrm gets exception when provenance turned off
- If provenance is turned off, the workflow run manager gets an exception when running a workflow.
- 02:23 PM Bug #4369: Folder creation when saving a KAR
- I can't reproduce this now, something likely got fixed along the way that also fixed whatever stacktrace I was seeing...
01/31/2010
- 09:28 PM Bug #4712: Running Kepler from IntelliJ IDEA does not work
- Fixed.
01/30/2010
- 12:30 AM Bug #4715: Eclipse metadata in webservice module breaks eclipse project import
- The webservice module is a special module which has a web service and its client code to execute kepler workflows. Th...
01/29/2010
- 05:29 PM Bug #4715 (Resolved): Eclipse metadata in webservice module breaks eclipse project import
- The webservice module in SVN has eclipse .project and .classpath metadata files that do not get overwritten by runnin...
- 04:35 PM Bug #4462: Component search in remote repositories not working
- looks like each and every search result is being fully parsed, which then kicks off the data download for EML actors ...
- 11:24 AM Bug #4462: Component search in remote repositories not working
- Trying to search the kepler dev repository yielded the following errors:
[run] trying to clone tpc02-water-flo... - 04:18 PM Bug #4713: Eclipse build still broken
- Dan's change that I committed in in r22681 should fix the eclipse build, it's worked for Dan, Ben and I.
- 11:23 AM Bug #4713 (Resolved): Eclipse build still broken
- As mentioned on #kepler yesterday, the eclipse build is broken.
I get 20 Java Build Path Problems about project pt... - 03:34 PM Bug #4701: Persistent Database needed in Core Module for LSID generation to prevent namespace updating on clean-cache
- Done: the table is now in the persistent area for the core module. The connection parameters are in core's configurat...
- 12:25 PM Bug #4714 (Resolved): Adding actor documentation does not increment LSID
- Adding documentation to an actor (through [actor context menu]->Documentation->Customize) does not increment the LSID.
- 11:23 AM Bug #4712: Running Kepler from IntelliJ IDEA does not work
- Running "ant eclipse" and then following the instructions at
https://kepler-project.org/developers/reference/kepler-a... - 10:25 AM Bug #4712 (Resolved): Running Kepler from IntelliJ IDEA does not work
- This is related to the fix for bugs 4705 and 4709 (the change to the way the ptolemy module is checked out and manage...
- 08:41 AM Bug #4711 (Resolved): Problem with L.H. actor tree: ActorName,kar
- In a clean checkout under Windows, I'm now seeing the
kar files listed in the left hand actor tree.
I see
-Actor...
01/28/2010
- 06:09 PM Bug #4710 (Resolved): RExpression fails to convert arrayType(niltype)
- Create a workflow with 2 RExpressions. The first should output c(NA, NA). The second should take the output from th...
- 05:49 PM Bug #4709 (Resolved): error updating ptolemy/src
- Mark was trying the latest Kepler and ran into a problem with the build system. I believe he did a full checkout of ...
- 05:45 PM Bug #4705: ant change-to -Dsuite=wrp gives error
- This is fixed.
- 01:16 PM Bug #4705: ant change-to -Dsuite=wrp gives error
- This has to do with the changes to the ptolemy module that David made last night. He is working on a resolution.
- 11:15 AM Bug #4705: ant change-to -Dsuite=wrp gives error
- I get this as well with "change-to -Dsuite=kepler" at r22632.
- 10:23 AM Bug #4705: ant change-to -Dsuite=wrp gives error
- Oh, this is at r22632.
- 10:00 AM Bug #4705 (Resolved): ant change-to -Dsuite=wrp gives error
- Error: ptolemy is either not a suite or wasn't downloaded correctly.
ptolemy looks like it downloaded, svn returne... - 12:45 PM Bug #4322: Attempting to save changes to a workflow saved in a KAR file fails
- Yeah, this still needs to get done. Will make sure to get it into the RC1 release.
- 12:42 PM Bug #4515: Finish and Document the Save/Open KAR file functionality
- I think we can close this one now. All core save/open kar functionality has been completed. If we need better docum...
- 12:28 PM Bug #4483: Module dependencies in MoML files
- Chad I've added code to ImportModuleDependenciesAction that rebuilds the library after new modules are downloaded. T...
- 10:50 AM Bug #4634: run archive causes NPE when building local repository
- This got fixed somewhere along the line.
- 10:49 AM Bug #4706 (New): support provenance in master-slave 2.0
- provenance should be supported in Master-Slave 2.0. There should be an option on whether to firstly save provenance i...
- 10:38 AM Bug #4559: local repositories not showing up in components tree
- Not sure when the last bit got fixed, but it seems to be working now.
- 10:19 AM Bug #4682: losing reports from KARs
- needed to ensure we were listening to all revisions of the named object.
reopen if the problem persists - 10:07 AM Bug #3072: Security issues with distributed execution
- It can be configured by permission policy file at slave side. Users who start slave will know their requirements and ...
- 09:58 AM Bug #3069: start slave from gui
- slave should be started in both GUI and command line way. Users may remotely login slave machine, start slave by comm...
- 09:51 AM Bug #3068: rmiregistry should be started programmatically
- Users may start Kepler GUI at slave side. They also may only need to start slaveController especially when they can o...
01/27/2010
- 09:41 PM Bug #4682: losing reports from KARs
- when I reopen the saved KAR I see that the model (TypedCompositeActor) NamedObj that issues the updateRevision() is a...
- 07:49 PM Bug #4682: losing reports from KARs
- i'm testing a Map-based ObjectManager implementation so that we don't end up with different namedObjs with the same L...
- 03:24 PM Bug #4682: losing reports from KARs
- Technically, I think the bug is fixed as of r22615. However, the fix only addresses the swapping reports half of the...
- 12:32 PM Bug #4682: losing reports from KARs
- I'm not seeing it called for any workflow that i open via a KAR.
It is called when I open a MOML xml file.
Something... - 11:46 AM Bug #4682: losing reports from KARs
- I'm finally able to reproduce the bug. It requires a KAR file with a report that has a local LSID (i.e., the workflo...
- 09:05 PM Bug #4662: roll revision vs. new object ID
- This sounds like a WRP specific issue. Reassigning to Ben for the meantime.
Oliver the short answer to having Objec... - 08:54 PM Bug #4559: local repositories not showing up in components tree
- Oliver, can you recheck if this is still happening and close this bug if it is covered in other bugs or succinctly st...
- 08:42 PM Bug #4704: Generate XML for a KARFile
- Shell code has been created in the core module: org.kepler.kar.karxml.KarXmlGenerator
- 08:42 PM Bug #4704 (Resolved): Generate XML for a KARFile
- Create an XML string based on the Manifest and Entries of a KARFile.
See the example karxml file at the bottom of
... - 06:02 PM Bug #4701: Persistent Database needed in Core Module for LSID generation to prevent namespace updating on clean-cache
- Of those two options, I definitely vote for a 3rd database. One of the main reasons for the DB overhaul was to suppor...
- 04:53 PM Bug #4701 (Resolved): Persistent Database needed in Core Module for LSID generation to prevent namespace updating on clean-cache
- The need to use a database table to generate new LSID revisions (ref bug 4633) spawned a new database table called LS...
- 05:13 PM Bug #4463: Grey out component names in the component library that can not be dragged to the canvas
- It is unlikely we will need/want to do this in the future. Closing this bug.
- 05:07 PM Bug #4317: KAR's dependencies on modules need to be included in KAR metadata
- A KAR's module dependencies are now included in the KAR manifest file and are accessible through the KARFile class.
- 05:04 PM Bug #1750: Allow KAR files to include jar/class files
- It was agreed that the solution to this is to create a java utility for converting KAR files to Kepler modules. See ...
- 05:03 PM Bug #4702 (Resolved): KAR to module conversion utility
- Create a utility that converts KAR files (version 1.0 and 2.0) to Kepler modules.
This was previously bug 1750. - 04:54 PM Bug #4633: LSID conflicts
- Closing this bug. Opening a new bug (bug 4701) with the one remaining task of moving the LSID_GENERATOR table.
- 04:21 PM Bug #4538: problems with KARs that contain tags from default ontologies
- Seems like this got fixed a while back. Closing unless there are any objections.
- 02:40 PM Bug #4700 (In Progress): Reminder Update Wiki information to reflect Kepler 2.0 release.
- Update the information on the Wiki to include changes to Kepler in the 2.0 release. Remove any information in the Wik...
- 02:39 PM Bug #4699 (In Progress): Reminder Bug Update FAQ to reflect Kepler 2.0 release
- Update the FAQ with the 2.0 release features. Remove any statements in the FAQ that are outdated or no longer accurate.
- 02:35 PM Bug #4458: test for moving kepler directory
- Changing this to an enhancement request since this bug is for creating a test.
- 11:49 AM Bug #4697: Semantic Annotation does not increment LSID revision
- This is more general. Semantically annotating a workflow does not increment the workflow's lsid revision.
- 11:28 AM Bug #4304: Progress monitor is blank when authenticating for KAR upload
- Progress monitor has been replaced with a change in the mouse cursor to indicate that authentication is occurring.
01/26/2010
- 07:46 PM Bug #4696: Title bar doesn't refresh after rename during Save Archive
- bug in comment 1 is sort of fixed with r22611. Rename from canvas context menu will work (provenance will rename past...
- 06:46 PM Bug #4696: Title bar doesn't refresh after rename during Save Archive
- Additional similar bug#2: if you Save Archive, rename, cancel on the save to kar, the workflow and title are renamed,...
- 06:10 PM Bug #4696: Title bar doesn't refresh after rename during Save Archive
- original bug fixed in r22610.
additional bug described in comment 1 not yet fixed. - 05:16 PM Bug #4696: Title bar doesn't refresh after rename during Save Archive
- Also when you use the new Rename context menu item on the canvas, the listeners aren't notified, so the title bar ref...
- 04:33 PM Bug #4696 (Resolved): Title bar doesn't refresh after rename during Save Archive
- If you File => Save Archive, rename your Untitled workflow, and then cancel on the save to kar dialog, the workflow's...
- 05:37 PM Bug #4194: Kepler should have the Continous and Modal domains
- Done! The Continuous actors are available. It is possible to create
a Modal model.
See
https://kepler-project.org... - 05:30 PM Bug #4697 (Resolved): Semantic Annotation does not increment LSID revision
- If user gives a semantic annotation during Save Archive in ExportArchiveAction (see FIXME), I notice the LSID doesn't...
- 05:21 PM Bug #4673: past runs with workflows that get renamed don't reflect this
- Fixed in r22607
- 02:52 AM Bug #4630: creating and changing relations don't trigger LSID bump
- Workflow LSID revision is now being updated when creating, editing, deleting, or moving relations. It is somewhat no...
01/25/2010
- 04:57 PM Bug #4304: Progress monitor is blank when authenticating for KAR upload
- I don't think we will have this progress monitor anymore. The new solution is to use the wait cursor instead which i...
- 04:45 PM Bug #4570: dangling file handle for KARs
- Fixed now, just needed to call the close() method on the KARFile after opening it.
- 02:38 PM Bug #4010: RExpression2 - tracking for backwards compatibility
- Stupid Responses (SRs):
SR1 - you can change the "environment.txt" file in the r module to reflect the correct R_HOME... - 02:26 PM Bug #4010: RExpression2 - tracking for backwards compatibility
- Ben ... sorry to ask stupid questions (SQs).
SQ1: I just removed R 2.9.0 from my system and now have R 2.10.1. Ho... - 11:23 AM Bug #4673: past runs with workflows that get renamed don't reflect this
- The reason there's the problem in 2) is that ExportArchiveAction does not notify KeplerGraphFrameSave listeners like ...
- 11:14 AM Bug #4538: problems with KARs that contain tags from default ontologies
- Things had changed and the concept_label was no longer in the tags in the workflowRun. Sean added the concept_label b...
- 11:06 AM Bug #4479: Error messages are not imported during run import
- This was fixed in r21366.
01/24/2010
- 08:08 PM Bug #4380: Removing LocalRepository does not remove actors from Ontologies
- (In reply to comment #2)
> Fixed in rev 22588
*rev 22589 - 08:07 PM Bug #4380: Removing LocalRepository does not remove actors from Ontologies
- Fixed in rev 22588
- 04:23 PM Bug #4362: component search performance
- Since the search has been integrated into the Library Index and the Library no longer uses the ActorMetadata objects ...
- 04:18 PM Bug #4629: Undo doesn't roll LSID revision
- Undo and redo actions now roll the revision of the lsid in workflows. As of rev 22588
- 12:34 PM Bug #4581: Handle multiple revisions of components in the Component Library
- This solution is working well now. Closing this bug.
01/22/2010
- 03:30 PM Bug #4694 (Resolved): workflow run manager - differentiate imported runs
- Eric requests a way to differentiate imported runs ("husk runs") from those you actually ran. One idea is to change t...
- 11:03 AM Bug #4693 (In Progress): Ability to save just a report instance
- Eric requests the ability to easily save just the report instance. This should probably be a 1 step process when you'...
01/21/2010
- 06:21 PM Bug #4682: losing reports from KARs
- I lost another report. I started Kepler, loaded a KAR (that I had just been editing before restarting Kepler), added...
- 05:10 PM Bug #4671: cannot export workflow runs when workflow has actors with <> in the names
- retargeting to wrp - though perhaps it's a larger kepler issue?
- 04:29 PM Bug #4673: past runs with workflows that get renamed don't reflect this
- Correction to my last comment:
1) provenace renames past runs if you do a Save As.
2) If you do a Save Archive they o... - 01:59 PM Bug #4689 (Resolved): Export run creates duplicate WorkflowRun files. Exporting it again gives none.
- Oliver and I both have this problem after the big KAR change.
Aaron, I think you mentioned being aware of the dupli... - 12:29 PM Bug #4686 (Resolved): update copyright statements
- all files in the src tree need to either have copyrights added or existing copyrights updated before the release.
- 12:13 PM Bug #4685 (Resolved): Create installers
- Create the installers for the 2.0 release and pre-releases.
- 12:04 PM Bug #4684 (Resolved): Release tracking bug
- All the stuff to do before the release. One bug per task blocking this one.
01/20/2010
- 08:02 PM Bug #4056: create developer documentation for svn configuration.
- svnpropcheck expects text files as arguments. Below is a sample use:
bash-3.2$ cd /Users/cxh/src/kepler/util
bash-3... - 06:48 PM Bug #4056: create developer documentation for svn configuration.
- Thanks Christopher. It looks like I edited my ~/.subversion/config file a long time ago, but eclipse didn't automatic...
- 05:06 PM Bug #4056: create developer documentation for svn configuration.
- I have notes about svn configuration at
http://chess.eecs.berkeley.edu/ptexternal/nightly/doc/coding/eclipse.htm#Subv... - 04:51 PM Bug #4056: create developer documentation for svn configuration.
- I wonder if we should create and ask developers to use a standard svn config file (can't remember how this works)?
Sh... - 07:19 PM Bug #4673: past runs with workflows that get renamed don't reflect this
- Looks like procedure in comment#2 is an additional problem -- I think provenance only renames prior runs of the same ...
- 05:10 PM Bug #4682 (Resolved): losing reports from KARs
- I'm losing reports (still? again? I don't even know anymore). I'm
running r22544, with the modification to RExpre... - 04:45 PM Bug #4681 (Resolved): Check all file properties before release
- See bug#4056 for background.
I think we need to go through all our files before release to make sure the appropria... - 03:54 PM Bug #4631: Could use some way to change the "workflow name" stored in a KAR
- Not exactly a duplicate of 4334, but that solves this.
- 12:08 PM Bug #4126: Allow user CLASSPATH to be loaded in Kepler
- This is not an issue with the new build system. Now, it is easy to include necessary jars used by actors or other cod...
01/19/2010
- 04:47 PM Bug #4673: past runs with workflows that get renamed don't reflect this
- Ensure this procedure works as well before marking this bug fixed:
Aaron said:
Does this have something to do with t... - 04:45 PM Bug #4679: Workflow Name in Workflow Run Manager is not updated when renaming workflow
- dupe of 4673
- 04:30 PM Bug #4679 (Resolved): Workflow Name in Workflow Run Manager is not updated when renaming workflow
- Does this have something to do with the Provenance Database design? Perhaps it can be solved by adding a Name column...
- 03:14 PM Bug #4664: Fix and/or remove broken unit tests
- All current tests now complete successfully.
- 03:05 PM Bug #4334: Rename actor from canvas
- Quite possibly, can you check?
- 03:02 PM Bug #4334: Rename actor from canvas
- Does this also fix 4631 (which might have been a dup)?
- 02:10 PM Bug #4334: Rename actor from canvas
- I have added "Rename" menu item to the canvas context menu. This allows the user to rename a workflow without having...
- 09:58 AM Bug #4338: need to review usability and gui of module manager
- I've finished reviewing this and I think it's working well now. I don't see any real problems with it. getting modu...
01/15/2010
- 12:44 PM Bug #4671: cannot export workflow runs when workflow has actors with <> in the names
- As a test, locally I changed the method to instead use a momlparser, but unfortunately the same error crops up in Kep...
- 12:39 PM Bug #4671: cannot export workflow runs when workflow has actors with <> in the names
- Well, I'm not sure what the restrictions are on actor names other than no dots. I wouldn't mind others, but then the...
- 12:17 PM Bug #4671: cannot export workflow runs when workflow has actors with <> in the names
- can you just not use those characters in your names in this [heavily-XML-based] application?
I'm mostly being serious. - 11:57 AM Bug #4671: cannot export workflow runs when workflow has actors with <> in the names
- The error I get is:
[Fatal Error] :66:19: The value of attribute "name" associated with an element type "entity" must... - 10:52 AM Bug #4671: cannot export workflow runs when workflow has actors with <> in the names
- In tpc09, it's nested in one of the composite actors. I think the one towards the bottom called structure/abundance ...
- 11:58 AM Bug #4388: remove the ptII module
- I've added the module-info to ptolemy. The build system now knows where to look for it so the ptII module is no long...
- 10:29 AM Bug #4670: svn update fails to update module with modifications
- I think I came up with a simpler fix to the original problem. I changed the SVN command that is run to have the --ac...
- 10:12 AM Bug #4670: svn update fails to update module with modifications
- This is not a bug, this is a feature.
The problem that this feature solves is that when you update and there is a co... - 09:33 AM Bug #4670: svn update fails to update module with modifications
- I successfully reproduced this. Here is what I tried:
cd build-area
ant update
ant update-ptolemy -Drev=head
vim .....
01/14/2010
- 10:59 PM Bug #4671: cannot export workflow runs when workflow has actors with <> in the names
- this was for kruger tpc09?
Where was the actor with the ">" in the name?
This might be a larger ptolemy restriction a... - 05:25 PM Bug #4671 (Resolved): cannot export workflow runs when workflow has actors with <> in the names
- Title says it all. This is at r22494.
- 06:02 PM Bug #4674 (New): WorkflowRunManager search cells are catching tab keys wherever they occur
- Basically if you hit the TAB key anywhere in Kepler, the Workflow Run Manager hears it and filters runs. Afaict this ...
- 05:51 PM Bug #4673 (Resolved): past runs with workflows that get renamed don't reflect this
- If you export a run that is Unnamed1, you're prompted to give it a workflow name. If you name it, provenance renames ...
- 05:37 PM Bug #4672 (Resolved): Workflow title isn't refreshed during run export workflow rename
- If you export a run that's Unnamed1, you're prompted to give the workflow a name. If you give it it a name, finish yo...
- 05:30 PM Bug #4281: ant update produces message about running svn cleanup
- Actually, running "svn cleanup" does not fix this under Windows Server 2003.
To create a svn repository, what I did ... - 05:10 PM Bug #4388: remove the ptII module
- Reopening this bug because the ptII kepler module should be removed.
I'm all for putting kepler module info into the ... - 05:00 PM Bug #4669: report layout changes, but text field displays previous content
- This sounds like a problem with the text field value not properly being stored in the underlying ReportLayout model.
... - 04:57 PM Bug #4669: report layout changes, but text field displays previous content
- I should also point out that Comment 1 is wrong about only clicking once. The double-click seems to cause a left-rig...
- 04:55 PM Bug #4669: report layout changes, but text field displays previous content
- Actually, it's even weirder. It only seems to happen with click-drag to select when moving from right to left, but n...
- 04:53 PM Bug #4669: report layout changes, but text field displays previous content
- Some more information. This seems to only happen if I only click in the text field once while changing it. Double-c...
- 04:50 PM Bug #4669 (Resolved): report layout changes, but text field displays previous content
- This is at r22494. I create a trivial workflow (SDF only, 1 iteration) and a report with a text field. I enter some...
- 04:56 PM Bug #4670 (Resolved): svn update fails to update module with modifications
- Under Mac OS 10.5, I ran svn update:
[update-modules] Updating ptII...
[update-modules] svn -r head update /Users... - 04:37 PM Bug #4438: View: label shouldn't appear when there's no view drop-down menu
- fixed in r22491.
- 01:42 PM Bug #1750: Allow KAR files to include jar/class files
- This is a controversial design decision and should not be in 2.0.
Including jars in KAR files is NOT a feature. It i... - 11:04 AM Bug #1750: Allow KAR files to include jar/class files
- Umm, you're right. I was triaging bugs and made a couple mistakes. I'll put this back to 2.0.
- 08:59 AM Bug #1750: Allow KAR files to include jar/class files
- did i miss something yesterday? - we are dropping a feature that was in 1.0.
(In reply to comment #15)
> This can be... - 11:34 AM Bug #4179: ant jar does not include configs/
- I added the configs/ dir to the jar for the common module only.
- 10:08 AM Bug #4549: String Replace actor "remembers" previous execution values
- [i know you think i didn't test it, but i did...that's confusing since now it is erring for me, too]
How should this ... - 09:54 AM Bug #4549: String Replace actor "remembers" previous execution values
- A test is failing with this change:
------------------ testing $PTII/ptolemy/actor/lib/string/test/auto/StringReplac... - 09:39 AM Bug #4549: String Replace actor "remembers" previous execution values
- added a check for the channel width.
ran the tests - passed.
committed r56911
Now the actor will not fire if there i... - 09:57 AM Bug #4480: can't view more than one of workflow editor, report designer, and report viewer at a time
- save for later as open...
- 09:47 AM Bug #4480: can't view more than one of workflow editor, report designer, and report viewer at a time
- This would be part of an entire Kepler UI redesign.
01/13/2010
- 10:12 PM Bug #4668: Documentation for event-state module
- created wiki page with explanation and example code:
https://kepler-project.org/developers/reference/using-event-stat... - 03:24 PM Bug #4668 (Resolved): Documentation for event-state module
- Need developer-level documentation for how to use the even-state module in other modules.
- 06:38 PM Bug #4505: NPE from Semantic Search
- fixed in r22488, semantic search can return results now.
- 04:31 PM Bug #4505: NPE from Semantic Search
- The error for this is now:
java.lang.NullPointerException
at org.kepler.objectmanager.ActorMetadata.getActorAsNamedO... - 04:36 PM Bug #4194: Kepler should have the Continous and Modal domains
- I can at least get the Continuous domain in place for 2.0.0.
I was looking at how to do this, and I've not yet found... - 04:24 PM Bug #4659: Importing run gives a ClassCastException
- fixed in r22486.
problem was in WorkflowRun convertStringToWorkflowRun -- derivedFrom attribute was being created as... - 04:12 PM Bug #4629: Undo doesn't roll LSID revision
- Problems with LSIDs not getting updated properly need to be solved before 2.0.0
- 03:58 PM Bug #4503: Suggest Similar Components gives an error
- Maybe we should disable this feature for 2.0? Was it in 1.0?
- 03:51 PM Bug #4347: Reminder "bug" for manual testing before 2.0 release
- will rework this into a release bug
- 03:46 PM Bug #4439: reporting displays output for a different actor
- oh, neat!
- 03:45 PM Bug #4439: reporting displays output for a different actor
- It now prints an error message to stdout and in the report for any unresolved references.
- 03:37 PM Bug #4373: Copyright Statements are Inconsistent
- Will do this as part of the release process.
- 03:36 PM Bug #4317: KAR's dependencies on modules need to be included in KAR metadata
- this can be pushed to post 2.0
- 03:35 PM Bug #4483: Module dependencies in MoML files
- This visual icon is in the tree. Downloading now works when you right click on the item and tell it to get the depen...
- 03:31 PM Bug #1750: Allow KAR files to include jar/class files
- This can be talked about further after the 2.0 release.
- 03:30 PM Bug #4322: Attempting to save changes to a workflow saved in a KAR file fails
- Fix this after 4515 is done.
- 03:28 PM Bug #4341: rearrange the actors module into smaller modules
- pushing this to post-2.0. At this point, I don't think 2.0 should require this.
- 03:25 PM Bug #4304: Progress monitor is blank when authenticating for KAR upload
- this should be fixed with the kar saving functionality that aaron is adding (bug 4515)
- 02:52 PM Bug #4642: memory usage & slowdowns
- I've done some refactoring of the WRM so that I'm no longer creating so many runs so frequently -- hopefully this wil...
- 02:51 PM Bug #3976: Update Documentation for 2.0 release
- Assigning to Debi.
- 02:51 PM Bug #4316: re-evaluate how kars are managed in the build and runtime
- KARs will not be checked into SVN for the forseable future. Closing this bug. We can reopen it at a later time if t...
- 02:49 PM Bug #4667 (In Progress): New documentation on modules and extension points for modules
- Should include information on the config system, karentryhandlers, viewpanes,
adding icons to the config, etc. See ... - 02:45 PM Bug #4666 (Resolved): identify problems with converting .kepler-1.0 to .kepler-2.0
- Need to go through the kepler 1.0 version of .kepler and identify any problem areas that might crop up in converting ...
- 02:39 PM Bug #4665 (Resolved): Add unit tests for kar functionality
- Build a junit test framework for at least the basic functionality of the KAR subsystem.
- 02:37 PM Bug #4664 (Resolved): Fix and/or remove broken unit tests
- Go through the unit test suite and get all tests to run. remove any tests that are no longer relevant and make the r...
- 02:33 PM Bug #4506: Exception is thrown during workflow execution
- Seems like a workflow bug, not a kepler bug.
- 02:30 PM Bug #4482: JRE Exception Access Violations
- probably machine specific. not a kepler bug.
- 02:28 PM Bug #4350: Integrity constraint violation - no parent SYS_FK_59 table - during _first_ startup
- The cache directory just needs to be cleaned.
- 02:09 PM Bug #4340: Resolve KAR file/module format
- We have now done this, as far as the 2.0 release is concerned. the KAR and module format will remain separate with k...
- 12:28 PM Bug #4634: run archive causes NPE when building local repository
- Oh, the part about archives not showing up is from bug 4559. This might have gotten fixed by something else along th...
- 12:06 PM Bug #4634: run archive causes NPE when building local repository
- Disclaimer: I haven't used the Build button often.
I just tried this on r22478, and don't get the error, but if the... - 12:17 PM Bug #4587: Assure a clean cache when module configuration changes
- Fixed in r22479.
- 10:41 AM Bug #4179: ant jar does not include configs/
- I found another bug (feature maybe?) with the jar task. the resources/configuration directory gets put at the root o...
01/12/2010
- 11:33 PM Bug #4549: String Replace actor "remembers" previous execution values
- Unfortunately, this fix causes one of the tests to fail:
------------------ testing $PTII/ptolemy/actor/lib/string/t... - 11:11 PM Bug #4549: String Replace actor "remembers" previous execution values
- changed in the ptolemy code to not fire the old token if a new one did not exist
- 10:15 PM Bug #4311: Build system appears to lock if there is a conflict upon update
- I have looked into the CommandLine.java class more with Oliver Soong, and am going to try to hook process so that one...
- 08:24 PM Bug #4311: Build system appears to lock if there is a conflict upon update
- Fixed. Now, modules that have local modifications are not updated and an appropriate WARNING is given.
As far as Oli... - 05:18 PM Bug #4663: Tag shows up in workflow moml when it shouldn't
- I suspect this is to do with the building of the KAR, probably with the way the workflow is fetched out of the Object...
- 04:54 PM Bug #4663 (Resolved): Tag shows up in workflow moml when it shouldn't
- This may not be a tagging bug but a bug in a provenance query or in KAR building -- sometimes a tag that shouldn't be...
- 05:15 PM Bug #4559: local repositories not showing up in components tree
- At this point, KAR files in local repositories are not ending up in the components tree when they are first added. T...
- 05:10 PM Bug #4560: can't remove local repositories
- And closing.
- 05:09 PM Bug #4560: can't remove local repositories
- This seems to work now.
- 05:04 PM Bug #4570: dangling file handle for KARs
- Ben said to do this.
- 04:16 PM Bug #4656: Build system needs javadocs
- I added javadocs to all build-area classes. Did some minor refactoring and
reformatting as well. Rendered Javadocs ... - 04:11 PM Bug #4662 (Resolved): roll revision vs. new object ID
- My current auth namespace is 3371. I have a file with an old auth namespace of 1347. If I open the XML file, view L...
- 11:16 AM Bug #4660 (Resolved): Clicking in a section header highlights all the text.
- I have a section header with some text in it and I want to change that text. If I click on it, it highlights all of ...
01/11/2010
- 05:49 PM Bug #4659: Importing run gives a ClassCastException
- I don't think it's related, but I'll keep that in mind when I look into this.
To replicate:
- change-to and launch ... - 01:44 PM Bug #4659: Importing run gives a ClassCastException
- The could be from my fix to bug #4547
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4547
The change is that Doc... - 12:29 PM Bug #4659 (Resolved): Importing run gives a ClassCastException
- If you try to Open Archive a KAR containing a workflow run that needs to be added to provenance, you get a ClassCastE...
- 12:26 PM Bug #4516: Module Manager needs ability to install modules needed by KARs
- I changed this around a bunch so it is now done in the GUI instead of on kepler startup. When a module-dependencies:...
- 08:39 AM Bug #4439: reporting displays output for a different actor
- I'm thinking you'd still want the report to render if al but one reference were valid, right? Maybe just a warning th...
- 08:36 AM Bug #4439: reporting displays output for a different actor
- Why not just check that everything mentioned in the ROML exists just before you create the report (i.e., after execut...
- 12:39 AM Bug #4652: clicking rows in the wrm no longer updates the report designer/viewer
- no difference, I simply missed checking in part of the fix initially
01/10/2010
- 11:03 PM Bug #4547: documentation for file parameter includes an error
- Fixed. Changed DocAttribute.description from a StringParameter to a StringAttribute so that Kepler does not report er...
- 10:24 PM Bug #4439: reporting displays output for a different actor
- i suppose we could be listening for the MOML change request that deletes actors/ports/parameters that are referenced ...
- 10:21 PM Bug #4652: clicking rows in the wrm no longer updates the report designer/viewer
- what was the difference for linux?
01/08/2010
- 06:42 PM Bug #4652: clicking rows in the wrm no longer updates the report designer/viewer
- fixed in r22437.
- 06:27 PM Bug #4652: clicking rows in the wrm no longer updates the report designer/viewer
- r22436 fixed this on my mac build, but it's not working on linux...
- 03:32 PM Bug #4439: reporting displays output for a different actor
- I've updated provenance to handle these types of renames.
It might be nice if reporting displayed an error or warnin... - 02:16 PM Bug #4311: Build system appears to lock if there is a conflict upon update
- I'm not clear why option 2 is so complicated. Just pass stdin, stdout, and stderr from svn to ant. I don't expect a...
- 01:49 PM Bug #4311: Build system appears to lock if there is a conflict upon update
- If an error is printed, I'd be fine with it. Right now, it appears to hang and does not give any further output.
- 01:41 PM Bug #4311: Build system appears to lock if there is a conflict upon update
- A couple of things. First, there are two alternative things we could mean by "fixing" this issue: (1) Print out the e...
- 12:45 PM Bug #4311: Build system appears to lock if there is a conflict upon update
- I still don't think it really affects the user experience, but it's happened to me enough times to be annoying so I c...
- 12:38 PM Bug #4311: Build system appears to lock if there is a conflict upon update
- I was curious what the basis of your opinion that this should be done before 2.0 is? This is functionality to make li...
- 10:15 AM Bug #4311: Build system appears to lock if there is a conflict upon update
- This bug has happened to me exactly the way that Oliver has described on many occasions. It should be fixed prior to...
- 09:52 AM Bug #4311: Build system appears to lock if there is a conflict upon update
- The problem is that it never fails to complete. Normally on a conflict, svn outputs some information and blocks for ...
- 01:46 PM Bug #4653: error message says "data cloumn"
- search. replace. done.
- 01:37 PM Bug #4655: data packages are suddenly unusable
- dan fixed it
- 12:39 PM Bug #4655: data packages are suddenly unusable
- the cached data files are set as a data source for HSQL tables (SET TEXT....SOURCE) - but the path to the hsqldb was ...
- 12:53 PM Bug #4516: Module Manager needs ability to install modules needed by KARs
- tagged my current work here: https://code.kepler-project.org/code/kepler/tags/berkley-20100108-checkpoint-kar_can_dow...
- 12:49 PM Bug #4516: Module Manager needs ability to install modules needed by KARs
- There should always be user input when downloading new modules. Imagine that you are running the Kepler suite, then ...
- 12:40 PM Bug #4516: Module Manager needs ability to install modules needed by KARs
- Couple more issues here:
* I should have used the MANIFEST/dependsOnModule attribute instead of including a modules.... - 12:19 PM Bug #4516: Module Manager needs ability to install modules needed by KARs
- How does appending modules to modules.txt ensure the same environment that an actor was running in?
This is going to... - 11:59 AM Bug #4516: Module Manager needs ability to install modules needed by KARs
- The active modules.txt file is now appended with any information from the kar's modules.txt file. Note that this cou...
- 10:58 AM Bug #4516: Module Manager needs ability to install modules needed by KARs
- Kar files can now include a modules.txt file which will be processed by the ModuleDownloader. Any modules/suites in ...
- 11:02 AM Bug #4656 (Resolved): Build system needs javadocs
- The build system is lacking a lot of documentation. Javadocs should be added for (at least) all public methods and c...
- 10:19 AM Bug #4108: Do more extenstive testing before designating a revision of Ptolemy as stable
- I don't think this bug should be closed. I'm changing it to be a lower priority but reopening it. I think that ther...
01/07/2010
- 08:12 PM Bug #4311: Build system appears to lock if there is a conflict upon update
- Are you saying that when the update failed to complete, it did not say why? That is unusual. Can you reproduce this e...
- 07:57 PM Bug #4311: Build system appears to lock if there is a conflict upon update
- I'm not so sure it's a good idea to ignore this. This happened to Mark, Regetz, and me. None of us had made any loc...
- 07:24 PM Bug #4311: Build system appears to lock if there is a conflict upon update
- The solution to this problem is not in the build system. You should do the update manually if you have made changes.
- 07:59 PM Bug #4388: remove the ptII module
- There is no good way to remove the ptII suite without changes to the ptolemy module. This is not currently in the car...
- 07:52 PM Bug #4281: ant update produces message about running svn cleanup
- I agree that this bug should be closed. "ant update" is a convenience method which allows one to avoid having to run ...
- 07:47 PM Bug #4280: ant task fails under Windows
- Again, "ant task" is a convenience short cut for:
ant -f kepler-tasks.xml
Therefore, I do not intend on devoting an... - 07:44 PM Bug #4264: ant task fails if there are java compilation errors
- "ant task" is a convenience method. It never needs to be invoked.
If "ant task" fails, the solution is to type:
ant... - 07:40 PM Bug #4260: Add a test suite for the build system
- I think this is overkill and not a good use of resources. Problems in the build system tend to be detected immediatel...
- 07:22 PM Bug #4108: Do more extenstive testing before designating a revision of Ptolemy as stable
- Additional testing before designating a version of Ptolemy as "stable" is unnecessary. Closing this bug.
- 07:21 PM Bug #4202: typos in modules.txt are ignored
- The contents of modules.txt is now verified. Missing/mispelled modules now cause an error message to appear.
- 07:18 PM Bug #4353: Update publishing to allow for patches.
- This is now implemented.
- 07:14 PM Bug #4351: ant netbans fails due to missing file
- This bug no longer occurs.
- 07:12 PM Bug #4286: Changes to the GUI before 2.0
- There are only minor changes left before 2.0. This bug is no longer needed.
- 07:03 PM Bug #4082: New user guide section on modules/module manager
- Please assign bugs to welker4kepler@gmail.com when assigning bugs to me only.
I have documented module manager funct... - 07:00 PM Bug #4382: Remove switching between kepler and ptolemy
- It is no longer possible to launch Ptolemy from the Kepler module manager. This reinforces the separateness of the tw...
- 06:58 PM Bug #4650: module manager tries to download already downloaded modules
- Modules that are retrieved are not removed from the available modules pane. Instead, they are added to the "Downloade...
- 11:20 AM Bug #4650 (Resolved): module manager tries to download already downloaded modules
- After downloading a module, that module should be removed from the "available modules" list. If a user tries to down...
- 06:23 PM Bug #4655 (Resolved): data packages are suddenly unusable
- For some reason, EML 2 Dataset actors are not outputting any tokens for most output formats. The data exists at .kep...
- 06:09 PM Bug #4654: searching KNB through Kepler returns many console errors and caching fails
- It's looking like I managed to completely screw up my cache. A clean-cache fixed things.
Basically, I was signing i... - 05:44 PM Bug #4654 (Resolved): searching KNB through Kepler returns many console errors and caching fails
- This is at r22407 under linux. Things seem to work, but the cache content is all blank (files are all of size 0).
- 05:13 PM Bug #4653 (Resolved): error message says "data cloumn"
- The data cloumn didn't match head column
- 04:55 PM Bug #4652 (Resolved): clicking rows in the wrm no longer updates the report designer/viewer
- If I have multiple entries in the wrm and I click on different rows, the report designer and viewer no longer automat...
- 10:01 AM Bug #4516: Module Manager needs ability to install modules needed by KARs
- I've now split the module manager into two modules. module-manager now has basic classes for downloading modules. m...
01/06/2010
- 11:36 AM Bug #4161: Develop kepler workflow execution engine
- installed on my local system - did a roundtrip:
-upload workflow+report
-schedule
-wait
-view PDF report when complet...
01/05/2010
- 04:08 PM Bug #4161: Develop kepler workflow execution engine
- stylesheet issue on the Metacat side of things -- now fixed.
- 11:40 AM Bug #4161: Develop kepler workflow execution engine
- script-based execution still works. There's a slight problem on the Metacat side for the first MOML DTD...but that's ...
- 03:09 PM Bug #4648 (Resolved): Create classes to find and display any available documentation for installed modules or suites.
- Create classes to find and display the available documentation for installed modules or suites.
- 03:06 PM Bug #4647 (Resolved): Write documentation for Reporting in the style of Kepler Docs
- Write the user documentation for the WRP suite, using the same style as the rest of the Kepler documentation.
- 11:31 AM Bug #4538: problems with KARs that contain tags from default ontologies
- (In reply to comment #2)
> this looks wrong:
> <property name="semanticType" class="org.kepler.sms.SemanticType"
> va... - 10:09 AM Bug #4538: problems with KARs that contain tags from default ontologies
- this looks wrong:
<property name="semanticType" class="org.kepler.sms.SemanticType"
value="urn:lsid:lsid.ecoinformati... - 10:05 AM Bug #4453: tags don't show up in snow leopard (10.6)
- this is working for me on snow leopard
- 10:04 AM Bug #4480: can't view more than one of workflow editor, report designer, and report viewer at a time
- retargeting to post-2/wrp
- 09:43 AM Bug #4618: First export of a run doesn't yield KAR with ROML
- in the name of upcoming code freeze, I'm thinking this can be closed.
01/04/2010
- 02:47 PM Bug #4516: Module Manager needs ability to install modules needed by KARs
- I added a karEntryHandler for modules.txt files. I'm going to add a method to the module manager sot hat the entryHa...
01/03/2010
- 12:26 PM Bug #4547: documentation for file parameter includes an error
- Viewing the documentation for FileParameter works fine in the ptII tree,
but fails in Kepler, probably because of som...
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