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From 02/08/2010 to 03/09/2010

03/10/2010

07:59 PM Bug #4858: Open Actor on non-composite actors no longer works
Christopher's comment#9 works for me (beneath, and adjusting for, the trunk with the wrp suite, at least). However if... Derik Barseghian
05:47 PM Bug #4070: Rework Section 1 and the GSG
I updated the future goals section, corrected the contributors list, and made additional edits throughout. Chad -- I... Matt Jones
04:26 PM Bug #4681: Check all file properties before release
Yep, svn:keywords and svn:style for all files:
bash-3.2$ svn proplist README.txt
Properties on 'README.txt':
svn:ke...
Christopher Brooks
04:13 PM Bug #4681: Check all file properties before release
Which properties should we set? I propose keywords and eol-style as Derik said. Are there any others? I can write ... Chad Berkley
04:10 PM Bug #4803: Review the README file
Contributor list has been updated. All info in the README is now up to date. Version numbers need to be updated on ... Chad Berkley
04:08 PM Bug #4685: Create installers
Win/OSX/Lin Installers are now working and revised for the 2.0 release. Just version numbers (beta/rc/etc) need to b... Chad Berkley
04:05 PM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)
Pushing this to post 2.0 since I think it affects a small number of users. I don't think this should hold up the 2.0... Chad Berkley

03/09/2010

03:53 PM Bug #4873 (Resolved): Actors in repository library subtree are crammed together
On Windows XP (maybe on other versions of windows) the actor icons are crammed tightly together when you open up Acto... Chad Berkley

03/08/2010

03:19 PM Bug #4864: Update paths in demo workflows
I updated $Kepler\outreach-2.0\resources\demos\getting-started\03-ImageDisplay.xml to fit the new directory name for ... jianwu jianwu
01:10 PM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)
Yes. But for the moment it has to take second place to meeting our own rather extreme schedule commitments. I think... Tom Parris
12:42 PM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)
Sounds good. Thanks, Tom. Would you consider creating a new GDAL module for kepler? If so, we would be willing to ... Chad Berkley
11:36 AM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)
OK. We're in the process of building the new suite of java language bindings now. We've gotten them to compile on a... Tom Parris
11:20 AM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)
Hi Tom, The instructions for building gdal in windows are here:
http://trac.osgeo.org/gdal/wiki/GdalOgrInJavaBuildIns...
Chad Berkley
05:45 AM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)
Apologies for the delay. I've been travelling.
We obviously have the requisite hardware and can compile the GDAL C ...
Tom Parris
11:22 AM Bug #4070: Rework Section 1 and the GSG
This bug can be closed once Matt has edited the future goals section of chapter 1. Chad Berkley

03/05/2010

02:19 PM Bug #4872: listen to director throws error
I believe this is more general; I've seen this error periodically lately when using other context menus. Derik Barseghian
02:14 PM Bug #4872 (Resolved): listen to director throws error
Add an SDF Director and the Tools->Listen to Director. An error pops up on the console:
Error creating action fo...
Oliver Soong
12:29 PM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)
GDAL requires Microsoft Visual C++ to compile:
http://trac.osgeo.org/gdal/wiki/GdalOgrInJavaBuildInstructions
I don...
Chad Berkley
09:37 PM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)
I created a universal binary that supports 32 and 64 bit JVMs under MacOSX.
The library may be found in ptII/lib/matl...
Christopher Brooks
11:25 AM Bug #4070: Rework Section 1 and the GSG
Getting Started Guide is complete. Chad Berkley
11:13 AM Bug #4070: Rework Section 1 and the GSG
I checked out chapter 1. We need to update section 1.4 with new future goals of kepler. I've asked Matt if he might... Chad Berkley
08:00 AM Bug #4070: Rework Section 1 and the GSG
I think we can close this bug, but Chad can you look it over before I do ?
Thanks.
debi staggs
04:44 PM Bug #4802: KARs in KeplerData/workflows are being parsed on startup
commented out that bit of code - i believe it is redundant since it is also called in the open() method.
we should ke...
ben leinfelder

03/04/2010

02:23 PM Bug #4870 (New): searching for packages with the same name from multiple sources sometimes loses results
I have packages soong.4.14 and soong.28.5 on DEV and soong.4.15 and soong.28.9 on KNB. They all have the same title.... Oliver Soong
11:59 AM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)
The Ptolemy Matlab interface has similar problems, I'm looking at building 64bit
libraries for the Mac. On the Mac,...
Christopher Brooks
09:34 AM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)
>1) Check all native library actors and recompile as needed for the following
>platforms, and recompile/install as ne...
Chad Berkley
11:27 AM Bug #4858: Open Actor on non-composite actors no longer works
Sorry to be a Reopener, but this is still happening for me. I had Ben try it out, and it happens to him too. From Chr... Derik Barseghian
04:14 PM Bug #4858: Open Actor on non-composite actors no longer works
(In reply to comment #13)
> This happened for me today too, as I was going through testing the examples in
> the Docu...
debi staggs
11:04 AM Bug #4869 (In Progress): changes made to workflows during dialogs before committing (Edit Parameters/Cancel)
When I make changes to an actor through the dialog, it seems like the changes are made to the workflow immediately, b... Oliver Soong
09:51 AM Bug #4078: Rework Section 9
Updated by madhu. Chad Berkley
09:21 AM Bug #4852: Documentation => Remove Customization doesn't work
It did work at one point. It just removed the kepler documentation and let it default to the ptolemy docs. If there... Chad Berkley
05:52 PM Bug #4852: Documentation => Remove Customization doesn't work
I wonder if this ever worked in Kepler? It doesn't in 1.0. I'm having trouble finding where/how the documentation may... Derik Barseghian
09:19 AM Bug #4811: No "Get Metadata" item on right-click menu after dragging an EML actor to the canvas
The action handler that supports figuring out which object has been clicked on seems to have been broken so in the in... Chad Berkley
06:03 PM Bug #4811: No "Get Metadata" item on right-click menu after dragging an EML actor to the canvas
Hey Chad, is the Get Metadata context menu item supposed to be available for all actors? It looks like in 1.0 it was ... Derik Barseghian
09:13 AM Bug #4077: Rework Section 8
Added a new bug for updating the paths in the demos and docs. Closing this one. Chad Berkley
04:06 PM Bug #4077: Rework Section 8
only a couple minor things.
we do need to be aware of the act that the R examples are located in a the r module, not ...
ben leinfelder
09:11 AM Bug #4868 (Resolved): Update R paths in documentation and demos
The demos path to the R demos should point to the R demos directory, not the outreach demos directory. Make sure thi... Chad Berkley
09:09 AM Bug #4081: Rework Appendix B
Ok, thanks, Debi. The only thing left to do on this is update screenshots then. I've made a separate bug (bug 4867)... Chad Berkley
04:12 PM Bug #4081: Rework Appendix B
(In reply to comment #5)
> (In reply to comment #4)
> > Originally, I had wanted to keep all of the screen shots cons...
debi staggs
04:09 PM Bug #4081: Rework Appendix B
(In reply to comment #4)
> Originally, I had wanted to keep all of the screen shots consistent, however,
> it's going...
debi staggs
09:07 AM Bug #4867 (Resolved): Update screenshots for the documentation
Any screen shots that are out of date should be retaken and updated in the documentation. Chad Berkley
11:54 PM Bug #4082: New user guide section on modules/module manager
Made a new chapter (12) in the User Manual for modules. It is short and oriented towards users rather than developers... David Welker
11:47 PM Bug #4071: Rework Section 2
Will do this documentation update when we get installers created. David Welker
05:40 PM Bug #4848: only first change to Customize Documentation shown in Documentation=>Display
fixed also for Directors in r23268 (trunk) and r23269 (2.0) Derik Barseghian
04:29 PM Bug #4802: KARs in KeplerData/workflows are being parsed on startup
is that a "yes"? ben leinfelder
04:21 PM Bug #4797: Verify that multiple workflow/actor KARs work as expected
actor and director kars have been combined in head, closing this bug. Aaron Aaron

03/03/2010

03:45 PM Bug #4858: Open Actor on non-composite actors no longer works
This happened for me today too, as I was going through testing the examples in the Documentation. debi staggs
03:42 PM Bug #4081: Rework Appendix B
Originally, I had wanted to keep all of the screen shots consistent, however, it's going to take a lot of work to do ... Chad Berkley
03:16 PM Bug #4081: Rework Appendix B
Reviewed the R appendix - some minor typos corrected, but no glaring omissions re: functionality. I was concerned abo... ben leinfelder
11:37 AM Bug #4081: Rework Appendix B
updated links to NCEAS R reference material. Links are as follows (thanks, Rick).
http://www.nceas.ucsb.edu/scicom...
Chad Berkley
10:50 AM Bug #4081: Rework Appendix B
Updated links, proof-read. Need NCEAS links to work. Sent email to shaun and rick asking about missing pdfs.
http:...
Chad Berkley
03:41 PM Bug #4074: Rework Section 5
Done updating section 5. Chad Berkley
01:24 PM Bug #4852: Documentation => Remove Customization doesn't work
This is kepler-specific, it works in vergil. Derik Barseghian
01:13 PM Bug #4865: Second time running a workflow by command line faild
Working now for Jing and I, closing. Derik Barseghian
01:08 PM Bug #4865: Second time running a workflow by command line faild
This was the problem Ben fixed the other day, but began recurring again probably because of my changes in r23263, but... Derik Barseghian
12:28 PM Bug #4865: Second time running a workflow by command line faild
I ran into this also. I think the LSID is getting put in the cache, then when you try to run the WF from the kar file... Chad Berkley
12:24 PM Bug #4865 (Resolved): Second time running a workflow by command line faild
I use the following command to run a workflow:
java -classpath build-area/lib/ant.jar:kepler.jar org.kepler.build.ru...
Jing Tao
01:12 PM Bug #4860: GUI-free class for Workflow Run Export
Works now for Jing and I at r23265, closing. Derik Barseghian
12:49 PM Bug #3976: Update Documentation for 2.0 release
Chapter One of the user's guide links and screen shots have been updated. Asking Chad to review section 1.4 Future G... debi staggs
12:22 PM Bug #4864 (Resolved): Update paths in demo workflows
After RC1 is cut, update all file paths in the demo workflows to use the module-X.0 format. Chad Berkley
11:16 AM Bug #4076: Rework Section 7
The documentation is almost done. Several small issued to be discussed with Ilkay. jianwu jianwu
11:06 AM Bug #4077: Rework Section 8
updated all links. reviewed and revised content. asking ben to make sure we're not missing anything with the additi... Chad Berkley
10:36 AM Bug #4078: Rework Section 9
Updated all links and proof-read. Sent an email to Ilkay asking her to review the content as I don't know enough abo... Chad Berkley
10:22 AM Bug #4078: Rework Section 9
I'll take this one. Chad Berkley
10:21 AM Bug #4079: Rework Section 10
done. Chad Berkley

03/02/2010

02:32 PM Bug #4858: Open Actor on non-composite actors no longer works
I did:
mkdir kepler-2.0
cd kepler-2.0
svn co https://code.kepler-project.org/code/kepler/branches/releases/release-...
Christopher Brooks
11:22 AM Bug #4858: Open Actor on non-composite actors no longer works
Christopher,
your fix does not work for me. Is there something else you did? The ptolemy-8.0/src directory is alr...
Chad Berkley
10:51 AM Bug #4858: Open Actor on non-composite actors no longer works
Hmm, the .classpath file does include the ptolemy src directory in the classpath. I'm currently looking into why thi... Chad Berkley
06:09 PM Bug #4858: Open Actor on non-composite actors no longer works
I can reproduce this under Kepler trunk with Eclipse.
The workaround is to add ptolemy/src to the classpath.
How I ...
Christopher Brooks
05:39 PM Bug #4858: Open Actor on non-composite actors no longer works
Also happens to me from trunk from within eclipse. Maybe another eclipse user can see if it happens to them too... Derik Barseghian
05:06 PM Bug #4858: Open Actor on non-composite actors no longer works
Hmm, reopening. So even with the ptolemy revision confusion aside, on a fresh checkout of the branch, this error does... Derik Barseghian
02:30 PM Bug #4851: KarEntryAttributes not saved in MANIFEST.MF/KarXML
fixed Aaron Aaron
01:31 PM Bug #4845: KAR dependencies not properly supporting module versions
Seems to be OK now. Aaron Aaron
09:54 AM Bug #4860 (Resolved): GUI-free class for Workflow Run Export
I'm trying to get the command-line execution working where I run a KAR and it produces a run KAR with the workflow/la... ben leinfelder
08:26 AM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)
GDAL probably just needs to be recompiled for this architecture, and the installer adapted to detect which architectu... Matt Jones
07:41 AM Bug #4859 (In Progress): GDALTranslate does not work on Windows 7 (64bit)
GDALJniGlue fails to intialize on Windows 64bit operating systems.
ptolemy.kernel.util.IllegalActionException: i...
Tom Parris
07:31 AM Bug #3205: gdalTranslate actor crashes on bad format and won't work with all gdal formats
We're having a similar problem on the 2.0.0 trunk. This is a trivial workflow that attempts to convert an ERDAS IMG ... Tom Parris
09:59 PM Bug #4826: intermittent exceptions displaying matrix tokens
Fixed.
The problem was that actor.gui.MatrixPane has a public variable JTable table.
This variable should only be use...
Christopher Brooks

03/01/2010

03:08 PM Bug #4858: Open Actor on non-composite actors no longer works
Thanks guys. I wasn't seeing a bunch of ptolemy updates from within eclipse. I've updated with ant update, and it's w... Derik Barseghian
02:54 PM Bug #4858: Open Actor on non-composite actors no longer works
Oh, I should also note that I updated the context menu configuration last week to match up with some new ptolemy menu... Chad Berkley
02:50 PM Bug #4858: Open Actor on non-composite actors no longer works
I just tried this with the 2.0 branch and it worked for me. Have you tried a fresh checkout, derik? Also, are you u... Chad Berkley
02:36 PM Bug #4858: Open Actor on non-composite actors no longer works
Hey Christopher,
Thanks, it works for me on trunk too, I should've tried that and also specified: this is currently a...
Derik Barseghian
02:34 PM Bug #4858: Open Actor on non-composite actors no longer works
[Sorry, committed before being done].
I can't reproduce this. I'm running the Kepler devel tree
from the ptII head....
Christopher Brooks
02:22 PM Bug #4858: Open Actor on non-composite actors no longer works
Hmm, this works for me in the Kepler devel tree and the Ptolemy tree.
I'm running from the
Christopher Brooks
01:44 PM Bug #4858 (Resolved): Open Actor on non-composite actors no longer works
Drag a Display to canvas, right-click Open Actor and you'll get an Error popup:
Cannot find a tableau or the source ...
Derik Barseghian
02:01 PM Bug #4826: intermittent exceptions displaying matrix tokens
This bug does not seem to affect functionality, so I'm moving it to 2.x.y Christopher Brooks
11:57 AM Bug #4857: Search on ecogrid server does not return proper results
Fixed in r23242. Changed the ecogrid XML query document in a similar way to the way Ben told me to modify the query f... Sean Riddle
11:50 AM Bug #4857 (Resolved): Search on ecogrid server does not return proper results
I uploaded a test workflow called count.kar (LSID = 8097.16.1) to the Kepler dev repository. I then searched on term ... Sean Riddle
11:15 AM Bug #4848: only first change to Customize Documentation shown in Documentation=>Display
I've filed a bug and an ER against vergil re: an NPE on Get Documentation on actor ports, and Customize Documentation... Derik Barseghian

02/28/2010

04:28 PM Bug #4802: KARs in KeplerData/workflows are being parsed on startup
ReportLayoutKAREntryHandler.cache
WorkflowManager.getWorkflows
WorkflowManager.initialize
ObjectManager.getObjectRevi...
Aaron Aaron

02/27/2010

08:27 PM Bug #4848: only first change to Customize Documentation shown in Documentation=>Display
fixed for workflows and actors in r23238. Derik Barseghian
05:10 PM Bug #4848: only first change to Customize Documentation shown in Documentation=>Display
The problem is with calling Show Documentation (which calls GetDocumentationAction) twice.
On the first call to Get...
Derik Barseghian
07:09 PM Bug #4852 (Resolved): Documentation => Remove Customization doesn't work
If you Customize Documentation on a workflow or an actor, Remove Customization doesn't remove it. Derik Barseghian

02/26/2010

03:26 PM Bug #4802: KARs in KeplerData/workflows are being parsed on startup
I can see the cache() method will eventually call the ObjectManager. is this the culprit that forces parsing of the m... ben leinfelder
03:13 PM Bug #4851: KarEntryAttributes not saved in MANIFEST.MF/KarXML
Yeah, looks like KARBuilder.prepareManifest() only adds certain attributes to the Manifest. Really it should enforce ... Aaron Aaron
03:09 PM Bug #4851 (Resolved): KarEntryAttributes not saved in MANIFEST.MF/KarXML
I'm trying to add some key metadata entries to the KAREntries I provide in the ReportInstanceKAREntryHandler. I can s... ben leinfelder
02:29 PM Bug #4828: Uploading a top-level workflow to the repository fails
Now the DOCTYPE is screened out from fragments prior to constructing the larger KAR XML document. Sean Riddle
01:31 PM Bug #4828: Uploading a top-level workflow to the repository fails
targeting for 2.0 ben leinfelder
02:05 PM Bug #4797: Verify that multiple workflow/actor KARs work as expected
Also combined directors-2.0 kars into one kar. do a
"rm ~/KeplerData/modules/directors-2.0/kar/*.kar"
and also an ...
Aaron Aaron
01:46 PM Bug #4797: Verify that multiple workflow/actor KARs work as expected
I have combined all the actors in the actors-2.0 module into 1 kar. Recommended to "rm ~/KeplerData/modules/actors-2... Aaron Aaron
11:54 AM Bug #4799: "Login Anonymously" gave an error during the data search
Refactored the anonymous login configuration to be at the Domain class rather than the Repository class.
-adds config...
ben leinfelder
10:53 AM Bug #4799: "Login Anonymously" gave an error during the data search
Ugh. We still have two different systems for managing our various "remote services":
-Repositories (components)
-Ecog...
ben leinfelder
10:38 AM Bug #4799: "Login Anonymously" gave an error during the data search
I figured it out!
when you try to use the "Login Anonymously" button, the authentication service will try to look of...
ben leinfelder
09:16 AM Bug #4849: ant eclipse fails
Fixed. Forgot to add some new files to the repository. David Welker
09:10 AM Bug #4849: ant eclipse fails
I should mention this is on trunk ben leinfelder
09:10 AM Bug #4849 (Resolved): ant eclipse fails
[eclipse] java.io.FileNotFoundException: /Users/leinfelder/workspace_kepler/kepler/build-area/resources/eclipse/Ptole... ben leinfelder
05:55 PM Bug #4848 (Resolved): only first change to Customize Documentation shown in Documentation=>Display
If I right-click Documentation=>Customize Documentation on an actor, I can change the documentation, and Documentatio... Derik Barseghian
05:28 PM Bug #4337: 1.0 -> 2.0 upgrade issues tracking bug
All tasks are closed. Closing this tracking bug. Chad Berkley
05:27 PM Bug #4811: No "Get Metadata" item on right-click menu after dragging an EML actor to the canvas
Fixed in rev 23213. Chad Berkley
05:10 PM Bug #4847 (Resolved): Instantiating new actor from library gives error after restart
Steps:
- On 2.0 branch, drag out e.g. an ImageJ actor, and e.g. change its name and customize its documentation
- r...
Derik Barseghian

02/25/2010

03:45 PM Bug #4846: error opening kar from local repository
I also noticed that, after restarting Kepler, the KAR and local repository *are* listed in the components pane, but t... Oliver Soong
03:38 PM Bug #4846: error opening kar from local repository
I just noticed, but I'm getting 2 of these errors every time I save to the local repository:
ERROR (org.kepler.obje...
Oliver Soong
02:50 PM Bug #4846 (Resolved): error opening kar from local repository
This is with wrp at r23202. I deleted .kepler and KeplerData. I create a trivial workflow (default SDF and RExpress... Oliver Soong
03:17 PM Bug #3976: Update Documentation for 2.0 release
All of the screenshots and hyperlinks for the getting started guide have been updated. debi staggs
02:37 PM Bug #4845 (Resolved): KAR dependencies not properly supporting module versions
The KAR dependencies are not being properly matched to module names and versions. Aaron Aaron
01:28 PM Bug #4801: out of memory
There's another way to trigger a memory leak. I'm not sure if these are 2 different leaks or 2 symptoms of the same ... Oliver Soong
11:55 AM Bug #4727: Cannot compile Ptolemy from IntelliJ
I have fixed this so that Intellij's class path is determined in a manner more similar to the build. David Welker
11:54 AM Bug #4709: error updating ptolemy/src
I have fixed this so that if ptolemy/src is not present due to a problem with checkout, "ant update" will attempt to ... David Welker
11:37 AM Bug #4831: Kepler (trunk) couldn't save a workflow to a remote repository as kar file
I just tried and it works. Jing Tao
08:44 AM Bug #4830: Kepler exit when using echoGridWriter actor with the wrong xml path.
Jing, my test on 2.0 branch works. Thanks. jianwu jianwu
05:54 PM Bug #4830: Kepler exit when using echoGridWriter actor with the wrong xml path.
This issue was caused on PutServiceClient.java. Aprivate method on this class called System.exit(1) when it caught an... Jing Tao
03:27 AM Bug #4337: 1.0 -> 2.0 upgrade issues tracking bug
Are there any remaining tasks for this bug? David Welker
03:11 AM Bug #3027: jar handling issues
This older bug can be closed. Multiple versions of the same jar can now be handled through either overrides or a spec... David Welker

02/24/2010

01:50 PM Bug #4830: Kepler exit when using echoGridWriter actor with the wrong xml path.
make it available at kepler-dev. jianwu jianwu
12:38 PM Bug #4830 (Resolved): Kepler exit when using echoGridWriter actor with the wrong xml path.
The message for the execution of the attached workflow.
[run] EcogridUtils: The time to create instance is =...
jianwu jianwu
01:45 PM Bug #4811: No "Get Metadata" item on right-click menu after dragging an EML actor to the canvas
Fixed the missing director rt. click menu items. this was due to a menu reorg on the ptII side. Still working on th... Chad Berkley
11:11 AM Bug #4811: No "Get Metadata" item on right-click menu after dragging an EML actor to the canvas
On wrp suite (kepler trunk), I saw the "Get Metadata" menu item after right click an eml actor on an existed workflow... Jing Tao
10:26 AM Bug #4811: No "Get Metadata" item on right-click menu after dragging an EML actor to the canvas
The right click menu works if you rt click on the item in the library. I'll see if I can add this to the right click... Chad Berkley
01:11 PM Bug #4832: python actor outputting to disconnected composite output throws error
I take back the part about it affecting the 2.0 branch. I can't keep my windows straight. It is affecting wrp. Oliver Soong
01:09 PM Bug #4832: python actor outputting to disconnected composite output throws error
This seems to affect the 2.0 Kepler branch. Oliver Soong
01:07 PM Bug #4832 (Resolved): python actor outputting to disconnected composite output throws error
I have a composite actor with an output port. Inside, I have an Expression passing a token to the default python act... Oliver Soong
12:41 PM Bug #4831 (Resolved): Kepler (trunk) couldn't save a workflow to a remote repository as kar file
On Kepler(trunk):
1. Open the eml-simple-plot.moml file.
2. Select my host as a saving destination (click source bu...
Jing Tao
10:10 AM Bug #4517: Verify that the search capabilities work
To close this bug, close bug 4462 and bug 4799 Chad Berkley
10:08 AM Bug #4517: Verify that the search capabilities work
Except bug 4462 and 4799, the others function seems working Jing Tao
10:05 AM Bug #4799: "Login Anonymously" gave an error during the data search
The error message has gone. However,the GUI showed three times when I kept clicking the "Login Anonymously" button. ... Jing Tao
06:22 PM Bug #4829 (New): User log4j files
We had a request that users' be able to maintain their own log4j files, e.g. in an environment where many users use t... Derik Barseghian

02/23/2010

03:17 PM Bug #4828 (Resolved): Uploading a top-level workflow to the repository fails
Uploading a top-level workflow attempts to put the whole workflow, complete with doctype tag, into the KAR XML it the... Sean Riddle
12:58 PM Bug #4010: RExpression2 - tracking for backwards compatibility
First ... apologies. I just submitted an RExpression bug that you've already fixed in Rexpression2 (column major matr... Tom Parris
12:38 PM Bug #4827 (New): RExpression does not handle matrix tokens correctly.
I've attached a simple workflow that demonstrates a bug in the way the RExpression actor translates Kepler/Ptolemy ma... Tom Parris
10:41 AM Bug #4820: Out of memory Error: Error creating alternateGetMoml!
I think this was a problem with left over data from the provenance suite. I cannot replicate this. Closing for now.... Chad Berkley
04:11 PM Bug #4820: Out of memory Error: Error creating alternateGetMoml!
O.K. neglected to mention that I had cleared the KeplerData > modules > provenance data. Maybe that could have someth... debi staggs
04:05 PM Bug #4820: Out of memory Error: Error creating alternateGetMoml!
In Kepler. But just downloaded the new build for 2.0 branch, and now cannot replicate it. Will try a few more times... debi staggs
10:40 AM Bug #4801: out of memory
I am not able to reproduce this in the kepler suite. I think this is a WRP/Provenance problem. I'm going to retarge... Chad Berkley
10:36 AM Bug #4826: intermittent exceptions displaying matrix tokens
I saw this in Ptolemy, so it is a Ptolemy bug, not a Kepler bug. I'll see if I can fix it before the final version of... Christopher Brooks
10:23 AM Bug #4826: intermittent exceptions displaying matrix tokens
Forgot to specify platform. Tom Parris
10:22 AM Bug #4826 (Resolved): intermittent exceptions displaying matrix tokens
I experience intermittent exceptions displaying matrix tokens in a simple workflow. The problems are more frequent w... Tom Parris
10:35 AM Bug #4516: Module Manager needs ability to install modules needed by KARs
Since 4483 is pushed to 2.x, pushing this one as well. most of the functionality is there, we just need a bit more t... Chad Berkley
10:34 AM Bug #4685: Create installers
verify that R can not be installed without not installing the entire R module. Chad Berkley
10:33 AM Bug #4803: Review the README file
Need to get a new contributor list. Chad Berkley
10:24 AM Bug #4799: "Login Anonymously" gave an error during the data search
this is not fixed for me. After merging the changes from the trunk to the branch, I have to click the "login anonymo... Chad Berkley
09:46 AM Bug #4578: tracking bug for changes to .kepler
Since 4785 has been closed, I don't think we're going to make any more changes to .kepler, so I'm closing this tracki... Chad Berkley

02/22/2010

03:59 PM Bug #4820: Out of memory Error: Error creating alternateGetMoml!
What suite is this happening in? Kepler or WRP or other? Chad Berkley
03:06 PM Bug #4820: Out of memory Error: Error creating alternateGetMoml!
How big is the KeplerData folder (specifically, KeplerData/modules/provenance), and if you try this again, do you get... Oliver Soong
02:45 PM Bug #4820 (Resolved): Out of memory Error: Error creating alternateGetMoml!
While stepping through the examples in the documentation, I did the following:
1. Clicked on the Data tab and did ...
debi staggs
03:57 PM Bug #4483: Module dependencies in MoML files
pushing to post 2.0 release. Chad Berkley
02:34 PM Bug #4802: KARs in KeplerData/workflows are being parsed on startup
This only seems to be a problem with KARS that use the ReportLayoutKAREntryHandler. Aaron Aaron
01:54 PM Bug #4261: Long file name on windows
Just an update on the long-line length problem.
The issue is that certain file systems have limits
and svn makes the ...
Christopher Brooks
01:44 PM Bug #4799: "Login Anonymously" gave an error during the data search
This has now been fixed. debi staggs

02/20/2010

05:01 PM Bug #4727: Cannot compile Ptolemy from IntelliJ
Yeah, I will be working on this. In the meantime, we can just patch the individual IDEs so that they work for everyone. David Welker
04:59 PM Bug #4727: Cannot compile Ptolemy from IntelliJ
This bug has cropped up again, this time also affecting Eclipse (and presumably NetBeans as well). The solution, acco... Sean Riddle

02/19/2010

01:08 PM Bug #4815 (New): Need a target to build kepler-styles.jar
On kepler 1.0.0, there was a target to build kpelr-styles.jar from eml repository. However, it was removed from keple... Jing Tao
01:06 PM Bug #4807: GetMetadata does nothing
In eml module, duplicated parameters were removed on eml-settings.xsl and eml-identifiers.xsl. Use a new target in em... Jing Tao
05:18 PM Bug #4812 (New): local repository KAR [right click]->Delete fails when file does not exist
Save a KAR to a local repository, then delete the file outside Kepler, then from the components tree right click the ... Oliver Soong

02/18/2010

03:48 PM Bug #4804: copy/paste relation changes width from Auto to 1
I'm not 100% sure this is the same bug, but if I delete the actors and relation, then undo the change, the relation w... Oliver Soong
03:48 PM Bug #4798: Create parser for KAR XML specification
this is a 2.0 bug in that it is blocking the component search bug ben leinfelder
03:46 PM Bug #4798: Create parser for KAR XML specification
https://code.kepler-project.org/code/kepler/trunk/modules/core/src/org/kepler/kar/karxml/KARFile.xsd
is what exists ...
ben leinfelder
12:51 PM Bug #4798: Create parser for KAR XML specification
As far as I know, no. That's a good point. I'll leave this open until there's some soft of official schema to check a... Sean Riddle
12:47 PM Bug #4798: Create parser for KAR XML specification
is there a complete XSD now? ben leinfelder
11:04 AM Bug #4798: Create parser for KAR XML specification
Wrote initial implementation. I'll leave this bug open for a day or two for interested parties (especially those invo... Sean Riddle
01:42 PM Bug #4811 (In Progress): No "Get Metadata" item on right-click menu after dragging an EML actor to the canvas
After dragging an EML actor from search result panel to canvas, there was a right-click menu item named "Get Metadata... Jing Tao
01:40 PM Bug #4810 (New): [right click]->Save Archive (KAR) on composite actor borks port attributes
Open the example MOML and save the composite actor as a KAR file. If you extract the MOML from the KAR, you'll see e... Oliver Soong
01:14 PM Bug #4808: ant clean-cache fails, NoClassDefFoundError, org/apache/commons/logging/LogFactory
This is fixed. Logging and third-party libraries should generally be kept out of the build. If you need a third-party... David Welker
12:51 PM Bug #4808: ant clean-cache fails, NoClassDefFoundError, org/apache/commons/logging/LogFactory
I am working on this bug now. It will be fixed shortly. David Welker
12:02 PM Bug #4808 (Resolved): ant clean-cache fails, NoClassDefFoundError, org/apache/commons/logging/LogFactory
Chris first reported this by e-mail, but I'm still seeing it. Aaron, svn says you put these lines in.
java.lang.N...
Oliver Soong
12:51 PM Bug #4809: Kepler storing authenticated search results
I'm not sure the search is being performed on the server. All I know is I'm not being asked to authenticate again. Oliver Soong
12:45 PM Bug #4809: Kepler storing authenticated search results
this has long been the case for datasets that have already been downloaded/cached - if you restart Kepler you don't n... ben leinfelder
12:18 PM Bug #4809 (New): Kepler storing authenticated search results
From a clean cache, start Kepler and search using authenticated sources. Authenticate and Kepler will return search ... Oliver Soong
12:02 PM Bug #4807: GetMetadata does nothing
I can see a error on console:
[run] ERROR: 'jar:file:/home/tao/project/kepler/core/lib/jar/kepler-styles.jar!/style/...
Jing Tao
11:49 AM Bug #4807 (Resolved): GetMetadata does nothing
Search for any data, right click on a search result, and select the only option, "GetMetadata". This does not seem t... Oliver Soong
11:44 AM Bug #4805: searching for data gives an NPE
It turned out that the NPE exception didn't affect the search result. But it still was annoying. We added a checking ... Jing Tao
06:50 PM Bug #4793: Workflow Run Manager - clicking on row when provenance is off gives error
You also can't delete rows when provenance is off, because getDefaultProvenanceRecorder will return a Recording in th... Derik Barseghian
05:48 PM Bug #4797: Verify that multiple workflow/actor KARs work as expected
I have created a KAR file that contains all the actors in the actors module. I called it CoreActors.kar and attached... Aaron Aaron
04:11 PM Bug #4806 (New): add output port to Throw Exception
In some of my workflows, I have an actor that checks that certain components are installed and working before trying ... Oliver Soong

02/17/2010

03:52 PM Bug #4805 (Resolved): searching for data gives an NPE
I searched for Kruger on both KNB and DEV using both authenticated and unauthenticated searches. I authenticated as ... Oliver Soong
03:34 PM Bug #4804: copy/paste relation changes width from Auto to 1
I can replicate this in Ptolemy
1. Right click on the relation and select "Configure". Note that the width is
set ...
Christopher Brooks
03:26 PM Bug #4804 (Resolved): copy/paste relation changes width from Auto to 1
Drag 2 actors to the canvas and join them with a relation. Copy the actors and relation and immediately paste it. T... Oliver Soong
03:19 PM Bug #4801: out of memory
I suggest using JProfiler to track this down. They have a trial offer. Edward and I have licenses. I don't have th... Christopher Brooks
02:57 PM Bug #4801: out of memory
After getting the out of memory error, I generated a heap histogram, restarted Kepler, and generated another heap his... Oliver Soong
02:13 PM Bug #4801 (In Progress): out of memory
ERROR: RecordingException: Unable to query data table: out of memory
I opened tpc01, ran it, closed it, opened tpc...
Oliver Soong
02:50 PM Bug #4803 (Resolved): Review the README file
Need to review the readme for factual accuracy and new content additions. Chad Berkley
02:44 PM Bug #4802: KARs in KeplerData/workflows are being parsed on startup
Ben can you email me the workflow that you're having problems with? Aaron Aaron
02:13 PM Bug #4802 (Resolved): KARs in KeplerData/workflows are being parsed on startup
When I launch Kepler with a clean cache but with a workflow sitting in my local workflow directory that uses protecte... ben leinfelder
02:43 PM Bug #4578: tracking bug for changes to .kepler
I would argue against having a task to clean the persistent directory. It's supposed to be persistent and not have t... Chad Berkley
02:35 PM Bug #4578: tracking bug for changes to .kepler
The kar directories that used to be in the cache are now in the KeplerData directory, so they are not deleted/rebuilt... Aaron Aaron
02:27 PM Bug #4578: tracking bug for changes to .kepler
ant clean-cache deletes .kepler/cache-2.0.0 in r23085 Derik Barseghian
02:12 PM Bug #4578: tracking bug for changes to .kepler
(In reply to comment #11)
> 'ant clean-cache' seems to not be deleting anything at the moment. shouldn't
> it?
Whoop...
Derik Barseghian
02:06 PM Bug #4578: tracking bug for changes to .kepler
'ant clean-cache' seems to not be deleting anything at the moment. shouldn't it? ben leinfelder
01:55 PM Bug #4792: NPE from Eml200DataSource
Now giving an actual message for the NPE and throwing it up the chain. ben leinfelder
01:41 PM Bug #4792: NPE from Eml200DataSource
i'll take this. ben leinfelder
12:41 PM Bug #4800 (Resolved): CacheManager can not insert WorkflowRun into cache
When you export a run, CacheManager's insertObject cannot insert WorkflowRun entries into cache. This is because the ... Derik Barseghian
12:26 PM Bug #4789: multiport input to composite actor seems to only pass first token
Inside the composite, the relation between the multiport and the RExpression has width 1. I'm not sure how or why it... Oliver Soong
11:26 AM Bug #4789: multiport input to composite actor seems to only pass first token
If I listen to the multiport input on the RExpression inside the composite, I see one token on a single channel. If ... Oliver Soong
10:03 AM Bug #4764: ProvenanceRecorder.changeExecuted slow after workflow run
I finally remembered that I can look directly at the provenance db while Kepler's running. I just deleted all the ru... Oliver Soong
04:38 PM Bug #4799 (Resolved): "Login Anonymously" gave an error during the data search
After running Kepler, I typed the word "Datos" on the Search Data field and clicked search button. An Authentication ... Jing Tao
04:32 PM Bug #4798 (Resolved): Create parser for KAR XML specification
Create a parser for the new KAR XML format, for use especially when it is returned from a metacat query. Sean Riddle

02/16/2010

03:51 PM Bug #4797 (Resolved): Verify that multiple workflow/actor KARs work as expected
The KAR system was written to allow for storing multiple actors/workflows inside the KAR. This has not been well tes... Aaron Aaron
02:20 PM Bug #4730: Kepler cannot run workflows stored in KAR files from the command-line.
Running kars is not supported except in a server configuration. The reason for this is that the kar is first sent to... Chad Berkley
02:18 PM Bug #4786: workflow file saved in KAR does not open when extracted
KeplerMetadataExtractor was using Document.getFirstChild() to get the rootNode when it should have been using Documen... Aaron Aaron

02/13/2010

11:59 PM Bug #4702: KAR to module conversion utility
Closing this bug because this feature is not needed at this time. David Welker
06:01 PM Bug #4764: ProvenanceRecorder.changeExecuted slow after workflow run
I think it's too big to attach, so I've put it here:
http://www.nceas.ucsb.edu/~soong/kepler/provenance%20HSQLDB%20...
Oliver Soong
05:22 PM Bug #4764: ProvenanceRecorder.changeExecuted slow after workflow run
Could I get a copy of the large db along with a list of steps performed to create it? Daniel Crawl
04:28 PM Bug #4764: ProvenanceRecorder.changeExecuted slow after workflow run
So I wiped my .kepler and KeplerData, started Kepler (to initialize these folders), and things ran "fast" (1-3 sec pe... Oliver Soong
04:04 PM Bug #4764: ProvenanceRecorder.changeExecuted slow after workflow run
Forgot to answer the question. Sort of. I can reproduce the 3000+ function calls, but they seem to resolve faster, ... Oliver Soong
05:29 PM Bug #4795: RExpression & cache cleaning
Zactly. Oliver Soong
05:20 PM Bug #4795: RExpression & cache cleaning
Dan H. already had some code in there for managing "too long of strings" for the script input - long numeric arrays c... ben leinfelder
05:14 PM Bug #4795: RExpression & cache cleaning
We could do away with the .sav files. Ben, try this in R:
str <- paste("_data.frame_:", rawToChar(serialize(iris, ...
Oliver Soong
04:36 PM Bug #4795: RExpression & cache cleaning
There are a few kinds of files generated by RExpression:
1. complex data transfer from one RExpression actor to anoth...
ben leinfelder
04:22 PM Bug #4795: RExpression & cache cleaning
I've noticed this too, and it seems like a good idea to me.
If the RExpression actor put these files into the proven...
Matt Jones
04:15 PM Bug #4795 (New): RExpression & cache cleaning
My .kepler cache bloats pretty quickly because of RExpression's temporary files. Can we have RExpression clear it's ... Oliver Soong

02/12/2010

03:41 PM Bug #4764: ProvenanceRecorder.changeExecuted slow after workflow run
That's correct and expected. recordContainerContents is initiated from changeExecuted, and it's recordContainerConte... Oliver Soong
03:26 PM Bug #4764: ProvenanceRecorder.changeExecuted slow after workflow run
If I run the workflow without accessing the data, and then change the targetYear, I only get 2 or 3 calls to changeEx... Daniel Crawl
08:54 AM Bug #4764: ProvenanceRecorder.changeExecuted slow after workflow run
It's in the Kruger SVN:
https://code.ecoinformatics.org/code/kruger/trunk/workflows/tpc09-plant-dynamics/tpc09-plant...
Oliver Soong
08:43 AM Bug #4764: ProvenanceRecorder.changeExecuted slow after workflow run
Could you provide the workflow? Daniel Crawl
09:51 PM Bug #4764: ProvenanceRecorder.changeExecuted slow after workflow run
The function recordContainerContents is the cause of the slow behavior. It is called from _recordWorkflowContents wh... Oliver Soong
07:21 PM Bug #4764: ProvenanceRecorder.changeExecuted slow after workflow run
I've tracked this down to the ProvenanceRecorder listener on the workflow NamedObj. After running tpc09, I change th... Oliver Soong
03:23 PM Bug #4792: NPE from Eml200DataSource
A better error message instead of NPE would be nice. Daniel Crawl
10:42 AM Bug #4792: NPE from Eml200DataSource
The workflow shouldn't run w/o the data.
What should be happening that isn't currently? Cleaner error?
ben leinfelder
10:02 AM Bug #4792 (Resolved): NPE from Eml200DataSource
1. open https://code.ecoinformatics.org/code/kruger/trunk/workflows/tpc09-plant-dynamics/tpc09-plant-dynamics-woody.k... Daniel Crawl
03:16 PM Bug #4791: Actor names no longer have spaces
Sorry a clean-cache should fix this, I think my partially updated version had trouble due to the new cache location... Aaron Aaron
01:12 PM Bug #4791: Actor names no longer have spaces
Oh and also closing this bug Aaron Aaron
01:11 PM Bug #4791: Actor names no longer have spaces
Hey guys, yeah looks like the LibIndex was using the name of the Jar entry found in the manifest and not the name tha... Aaron Aaron
12:06 PM Bug #4791: Actor names no longer have spaces
I looked at this and it looks like the name of the actor is now derived from the name of the kar file. The name of t... Chad Berkley
04:40 PM Bug #4791: Actor names no longer have spaces
I'm guessing this is related to the changes to the library/database. Aaron do you know? Derik Barseghian
03:05 PM Bug #4702: KAR to module conversion utility
> This is an inappropriate conversation for this forum.
And what is the appropriate forum?
> This issue has already...
Aaron Aaron
01:27 PM Bug #4730: Kepler cannot run workflows stored in KAR files from the command-line.
This is actually two bugs.
Bug 1: Spaces in the paths on a workflow run does not work. I found this to be true an...
Chad Berkley
12:25 PM Bug #4730: Kepler cannot run workflows stored in KAR files from the command-line.
The spaces aren't the issue. I can run this with no problem:
java -classpath build-area/lib/ant.jar:kepler.jar org....
Chad Berkley
11:49 AM Bug #4456: Workflow Run Manager in Report Viewer
This was fixed - the WRM is in the Report Designer view now and reports show when you click on run rows.
If you just ...
Derik Barseghian
11:45 AM Bug #4793 (Resolved): Workflow Run Manager - clicking on row when provenance is off gives error
If you disable provenance and then click on a row in the WRM you get an error:
org.kepler.provenance.QueryExceptio...
Derik Barseghian
11:42 AM Bug #4721: wrm gets exception when provenance turned off
Fixed in r23066.
However if you click on any row when prov is turned off you get an error. I'll file a bug for that.
Derik Barseghian
07:13 PM Bug #4766: Semantic Annotation Editor doesn't close when you click the close button on mac
fixed in r23062 Derik Barseghian
04:33 PM Bug #4458: test for moving kepler directory
Retargeting to post 2.0. Derik Barseghian
04:32 PM Bug #4577: integrate, and separate from save/export, the code for Uploading
This bug is a more of request for refactoring and an RFE (when a remote repository is check-marked, don't always prom... Derik Barseghian

02/11/2010

02:48 PM Bug #4791 (Resolved): Actor names no longer have spaces
At some point the spaces in component names went away. In 1.0 it was e.g. String Constant, but now it's StringConstan... Derik Barseghian
02:43 PM Bug #4790 (Resolved): cmd-click in wrp does not create relation
On a mac, doing a cmd-click in the canvas creates a relation (diamond icon) both in the kepler suite, and kepler 1.0,... Daniel Crawl
02:11 PM Bug #4702: KAR to module conversion utility
Aaron,
This is an inappropriate conversation for this forum. This issue has already been decided. You have already h...
David Welker
12:52 PM Bug #4702: KAR to module conversion utility
Thanks David, I agree that it is a non-trivial problem. One that we shouldn't have tried to tackle ourselves. Best ... Aaron Aaron
11:17 AM Bug #4702: KAR to module conversion utility
Aaron,
I don't believe that this is the proper forum for you to air your opinions about the desirability of options ...
David Welker
10:53 AM Bug #4702: KAR to module conversion utility
David, thank you for explaining to us why having a centralized modules.txt that contains prioritized dependencies is ... Aaron Aaron
04:13 AM Bug #4702: KAR to module conversion utility
I should point out that there is a less ambitious interpretation of this feature request. And that is, not that we ar... David Welker
04:00 AM Bug #4702: KAR to module conversion utility
Do any actual kar files from 1.0 actually contain jars? If so, is the number sufficient to justify building a utility... David Welker
01:59 PM Bug #4785: move cache object from 1.0 to 2.0
I've been looking at this all morning and I think we should punt on this until after 2.0. We basically need to use t... Chad Berkley
01:49 PM Bug #4580: Error saving/opening KAR that has a workflow with a PortParameter
fixed. Daniel Crawl
12:25 PM Bug #4578: tracking bug for changes to .kepler
changed to always use cache-2.0.0 in r23059. Derik Barseghian
12:12 PM Bug #4764: ProvenanceRecorder.changeExecuted slow after workflow run
I profiled Kepler comparing an execution and an execution followed by a parameter change. First, I loaded tpc09 into... Oliver Soong
11:01 AM Bug #4789 (Resolved): multiport input to composite actor seems to only pass first token
See attached workflow. The problem is not likely to sit with RExpression itself, as I can move the RExpression actor... Oliver Soong
05:22 AM Bug #4281: ant update produces message about running svn cleanup
Christopher,
I was wondering if you could reproduce this problem still. I just tried to reproduce it using your comm...
David Welker
05:07 AM Bug #4328: change-to command checks out across branches
What is the purpose of the -Dbranch option? All branches should be named differently, so this option should not be ne... David Welker
04:31 AM Bug #4311: Build system appears to lock if there is a conflict upon update
This was fixed by Chad in an even better way by taking advantage of command-line options that exist in the svn update... David Welker
04:27 AM Bug #4730: Kepler cannot run workflows stored in KAR files from the command-line.
This bug does not exist when running ant "run-workflow" against an ordinary workflow which is stored in an XML file. ... David Welker
05:34 PM Bug #4784: Remove or fix and re-enable the fullscreen zoom button
fixed for modules that use tagging in r23056. Derik Barseghian
05:04 PM Bug #4786 (Resolved): workflow file saved in KAR does not open when extracted
If I save a workflow as a KAR, unjar the KAR, and try to open the workflow xml file, it opens as a text file instead ... Daniel Crawl

02/10/2010

03:38 PM Bug #4578: tracking bug for changes to .kepler
After talking w/ Chad and Matt the plan is to mostly leave things as they are. We just need to add version info to so... Derik Barseghian
03:13 PM Bug #4785 (New): move cache object from 1.0 to 2.0
Cache kar objects from 1.0 that contain customized actors (i.e. not those shipped with 1.0) need to be migrated to th... Chad Berkley
03:11 PM Bug #4740: Create Ontology_Catalog sql table in the CORE persistent database
push to 2.X.Y Aaron Aaron
02:50 PM Bug #4723: workflows directory should be moved
kar files are now placed into the persistent data directory at
~/KeplerData/modules/<modulename>/kar
You will need t...
Aaron Aaron
11:03 AM Bug #4723: workflows directory should be moved
Workflows directory has been moved into the persistent KeplerData directory. I will also move the module kar directo... Aaron Aaron
09:43 AM Bug #4723: workflows directory should be moved
reassigning to aaron. Chad Berkley
01:18 PM Bug #4580: Error saving/opening KAR that has a workflow with a PortParameter
Reassign to Dan, he's looking at this Derik Barseghian
10:46 AM Bug #4702: KAR to module conversion utility
This bug is for backwards compatibility. Since 2.0 kars do not allow for java classes or jars this utility would all... Aaron Aaron
09:42 AM Bug #4702: KAR to module conversion utility
What was the reason for needing this again? Do we need this for 2.0? Chad Berkley
10:12 AM Bug #4662: roll revision vs. new object ID
At 23040, the revision buttons no longer seem to exist, so I guess these exact symptoms will no longer occur. I'm no... Oliver Soong
10:02 AM Bug #4710: RExpression fails to convert arrayType(niltype)
I think we fixed this in 22692. Oliver Soong
09:39 AM Bug #4784: Remove or fix and re-enable the fullscreen zoom button
Lets remove it for 2.0. Assigning to Debi. Chad Berkley
04:30 PM Bug #4784 (Resolved): Remove or fix and re-enable the fullscreen zoom button
The full-screen button is still in the toolbar and set to do nothing (http://bugzilla.ecoinformatics.org/show_bug.cgi... Derik Barseghian
04:19 PM Bug #3172: windows mouse wheel doesn't scroll canvas
Retargeting this bug to 2.X.Y.
Some related scrolling issues were brought up by Peter during yesterday's REAP call:
...
Derik Barseghian

02/09/2010

03:56 PM Bug #4783 (New): Standardize workflow parsing to get parameters
There are a few different approaches (SciencePipes, CAMERA, UCGrid, Hydrant, etc.) to get workflow parameters from an... Ilkay Altintas
03:41 PM Bug #4462: Component search in remote repositories not working
then there's a sample of this "kar metadata" file that aaron uploaded here:
http://kepler-dev.nceas.ucsb.edu/kepler/m...
ben leinfelder
03:36 PM Bug #4462: Component search in remote repositories not working
if you go on Keper-dev's "dev skin" and search using this squery, you can see the "kar" metadata is returned.
(URL: h...
ben leinfelder
03:34 PM Bug #4462: Component search in remote repositories not working
Need to verify with Aaron, but I believe:
components are now being uploaded using a new XML metadata format (a wrappe...
ben leinfelder
03:25 PM Bug #2493: actor repository tracking bug
adding dependencies... ben leinfelder
03:04 PM Bug #4781: Use the KarXmlGenerator to create the xml metadata sent to the metacat server during "Upload To Repository" action
KAR Uploads from Kepler now use the new KarXml format. Aaron Aaron
06:00 PM Bug #4781 (Resolved): Use the KarXmlGenerator to create the xml metadata sent to the metacat server during "Upload To Repository" action
Use the KarXmlGenerator class to create the xml metadata sent to the metacat server during "Upload To Repository" action Aaron Aaron
02:01 PM Bug #4697: Semantic Annotation does not increment LSID revision
fixed in r23035 Derik Barseghian
01:55 PM Bug #4782: configuration files do not load with non en_US locale
fixed in r23033. Thanks Chad! Daniel Crawl
12:06 PM Bug #4782: configuration files do not load with non en_US locale
added a method to use a default locale tagged file if the currently set locale is not available. Chad Berkley
11:00 AM Bug #4782 (Resolved): configuration files do not load with non en_US locale
If the locale is not set to en_US, the configuration files do not load. I can reproduce this on my mac by:
export ...
Daniel Crawl
11:11 AM Bug #4373: Copyright Statements are Inconsistent
added a flag to update the copyrights for tests. all tests are now updated. Chad Berkley
10:48 AM Bug #4373: Copyright Statements are Inconsistent
The sources in tests/src/ have old and inconsistent copyrights. Daniel Crawl
05:57 PM Bug #4704: Generate XML for a KARFile
I created one junit test that reads in a test kar file (that I put in the same directory as the Junit test, I guess t... Aaron Aaron

02/08/2010

03:51 PM Bug #4773 (New): Data processing on the GPP
Do we allow data processing on the GPP unit? Could it be a Kepler workflow, e.g., for quick QA?QC. Ilkay Altintas
03:49 PM Bug #4762: create gui to control sensor from kepler
How does an issued command go from Kepler to sensor? A sequence diagram showing all the components would be good to e... Ilkay Altintas
03:45 PM Bug #4756: allow saving of sensor workflow output
This could be separated into two different bugs: (a) for writing to Metacat and
(b) for writing to DataTurbine
Ilkay Altintas
03:44 PM Bug #4756: allow saving of sensor workflow output
This could be separated into two different bugs: (a) for writing to Metacat and one for writing to DataTurbine Ilkay Altintas
03:42 PM Bug #4755: update workflow run manager and reporting to display runs of sensor workflows
An example report (what comes up when you click on a row for the example site in figure 1) is needed to understand th... Ilkay Altintas
03:39 PM Bug #4754: update metacat workflow execution scheduler
This bug should include the documentation of how to set up the server, how to configure it, etc. Ilkay Altintas
03:34 PM Bug #4753: create gui for scheduled execution of sensor workflows on server
This should have an option to run a workflow continuously.
Another idea is, can we change the frequency of a workflo...
Ilkay Altintas
03:30 PM Bug #4752: create a sensor plots gui
What other visualization of data can we come up with in addition to plotting? Ilkay Altintas
03:28 PM Bug #4751: implement "run" for site layout
What director will be used to run the layout? Ilkay Altintas
03:23 PM Bug #4748: create google earth kml from component coordinates
Any other mapping interface? Ilkay Altintas
03:17 PM Bug #4745: load & save site layout to metacat
Another way of doing site documentation(Figure 1 in https://kepler-project.org/developers/incubation/kepler-engineeri... Ilkay Altintas
03:11 PM Bug #4743: create gui to edit documentation metadata for component
Do we know if there's missing information? Are there optional fields and how do they effect the design? Ilkay Altintas
03:08 PM Bug #4742: create engineering view model type
As a start:
1. Does an engineering workflow only produce commands to control, etc. the sensors? Using what actor and ...
Ilkay Altintas
03:06 PM Bug #4742: create engineering view model type
We need a definition and distinctionof what scientific workflow vs. engineer workflow is. This could also be thought ... Ilkay Altintas
02:48 PM Bug #4741: create icons for engineering view components
The icons should show explicit input and output ports for easy linking of different entities.
Figure 1 in https://k...
Ilkay Altintas
 

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