Kepler

03/09/2010

07:59 PM Bug #4858: Open Actor on non-composite actors no longer works

Christopher's comment#9 works for me (beneath, and adjusting for, the trunk with the wrp suite, at least). However if... Derik Barseghian

05:47 PM Bug #4070: Rework Section 1 and the GSG

I updated the future goals section, corrected the contributors list, and made additional edits throughout. Chad -- I... Matt Jones

04:26 PM Bug #4681: Check all file properties before release

Yep, svn:keywords and svn:style for all files:
bash-3.2$ svn proplist README.txt
Properties on 'README.txt':
svn:ke... Christopher Brooks

04:13 PM Bug #4681: Check all file properties before release

Which properties should we set? I propose keywords and eol-style as Derik said. Are there any others? I can write ... Chad Berkley

04:10 PM Bug #4803: Review the README file

Contributor list has been updated. All info in the README is now up to date. Version numbers need to be updated on ... Chad Berkley

04:08 PM Bug #4685: Create installers

Win/OSX/Lin Installers are now working and revised for the 2.0 release. Just version numbers (beta/rc/etc) need to b... Chad Berkley

04:05 PM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)

Pushing this to post 2.0 since I think it affects a small number of users. I don't think this should hold up the 2.0... Chad Berkley

03:53 PM Bug #4873 (Resolved): Actors in repository library subtree are crammed together

On Windows XP (maybe on other versions of windows) the actor icons are crammed tightly together when you open up Acto... Chad Berkley

03/08/2010

03:19 PM Bug #4864: Update paths in demo workflows

I updated $Kepler\outreach-2.0\resources\demos\getting-started\03-ImageDisplay.xml to fit the new directory name for ... jianwu jianwu

01:10 PM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)

Yes. But for the moment it has to take second place to meeting our own rather extreme schedule commitments. I think... Tom Parris

12:42 PM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)

Sounds good. Thanks, Tom. Would you consider creating a new GDAL module for kepler? If so, we would be willing to ... Chad Berkley

11:36 AM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)

OK. We're in the process of building the new suite of java language bindings now. We've gotten them to compile on a... Tom Parris

11:20 AM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)

Hi Tom, The instructions for building gdal in windows are here:
http://trac.osgeo.org/gdal/wiki/GdalOgrInJavaBuildIns... Chad Berkley

05:45 AM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)

Apologies for the delay. I've been travelling.
We obviously have the requisite hardware and can compile the GDAL C ... Tom Parris

11:22 AM Bug #4070: Rework Section 1 and the GSG

This bug can be closed once Matt has edited the future goals section of chapter 1. Chad Berkley

03/05/2010

02:19 PM Bug #4872: listen to director throws error

I believe this is more general; I've seen this error periodically lately when using other context menus. Derik Barseghian

02:14 PM Bug #4872 (Resolved): listen to director throws error

Add an SDF Director and the Tools->Listen to Director. An error pops up on the console:
Error creating action fo... Oliver Soong

12:29 PM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)

GDAL requires Microsoft Visual C++ to compile:
http://trac.osgeo.org/gdal/wiki/GdalOgrInJavaBuildInstructions
I don... Chad Berkley

11:25 AM Bug #4070: Rework Section 1 and the GSG

Getting Started Guide is complete. Chad Berkley

11:13 AM Bug #4070: Rework Section 1 and the GSG

I checked out chapter 1. We need to update section 1.4 with new future goals of kepler. I've asked Matt if he might... Chad Berkley

08:00 AM Bug #4070: Rework Section 1 and the GSG

I think we can close this bug, but Chad can you look it over before I do ?
Thanks. debi staggs

03/04/2010

09:37 PM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)

I created a universal binary that supports 32 and 64 bit JVMs under MacOSX.
The library may be found in ptII/lib/matl... Christopher Brooks

11:59 AM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)

The Ptolemy Matlab interface has similar problems, I'm looking at building 64bit
libraries for the Mac. On the Mac,... Christopher Brooks

09:34 AM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)

>1) Check all native library actors and recompile as needed for the following
>platforms, and recompile/install as ne... Chad Berkley

04:44 PM Bug #4802: KARs in KeplerData/workflows are being parsed on startup

commented out that bit of code - i believe it is redundant since it is also called in the open() method.
we should ke... ben leinfelder

02:23 PM Bug #4870 (New): searching for packages with the same name from multiple sources sometimes loses results

I have packages soong.4.14 and soong.28.5 on DEV and soong.4.15 and soong.28.9 on KNB. They all have the same title.... Oliver Soong

11:27 AM Bug #4858: Open Actor on non-composite actors no longer works

Sorry to be a Reopener, but this is still happening for me. I had Ben try it out, and it happens to him too. From Chr... Derik Barseghian

11:04 AM Bug #4869 (In Progress): changes made to workflows during dialogs before committing (Edit Parameters/Cancel)

When I make changes to an actor through the dialog, it seems like the changes are made to the workflow immediately, b... Oliver Soong

09:51 AM Bug #4078: Rework Section 9

Updated by madhu. Chad Berkley

09:21 AM Bug #4852: Documentation => Remove Customization doesn't work

It did work at one point. It just removed the kepler documentation and let it default to the ptolemy docs. If there... Chad Berkley

09:19 AM Bug #4811: No "Get Metadata" item on right-click menu after dragging an EML actor to the canvas

The action handler that supports figuring out which object has been clicked on seems to have been broken so in the in... Chad Berkley

09:13 AM Bug #4077: Rework Section 8

Added a new bug for updating the paths in the demos and docs. Closing this one. Chad Berkley

09:11 AM Bug #4868 (Resolved): Update R paths in documentation and demos

The demos path to the R demos should point to the R demos directory, not the outreach demos directory. Make sure thi... Chad Berkley

09:09 AM Bug #4081: Rework Appendix B

Ok, thanks, Debi. The only thing left to do on this is update screenshots then. I've made a separate bug (bug 4867)... Chad Berkley

09:07 AM Bug #4867 (Resolved): Update screenshots for the documentation

Any screen shots that are out of date should be retaken and updated in the documentation. Chad Berkley

03/03/2010

11:54 PM Bug #4082: New user guide section on modules/module manager

Made a new chapter (12) in the User Manual for modules. It is short and oriented towards users rather than developers... David Welker

11:47 PM Bug #4071: Rework Section 2

Will do this documentation update when we get installers created. David Welker

06:03 PM Bug #4811: No "Get Metadata" item on right-click menu after dragging an EML actor to the canvas

Hey Chad, is the Get Metadata context menu item supposed to be available for all actors? It looks like in 1.0 it was ... Derik Barseghian

05:52 PM Bug #4852: Documentation => Remove Customization doesn't work

I wonder if this ever worked in Kepler? It doesn't in 1.0. I'm having trouble finding where/how the documentation may... Derik Barseghian

01:24 PM Bug #4852: Documentation => Remove Customization doesn't work

This is kepler-specific, it works in vergil. Derik Barseghian

05:40 PM Bug #4848: only first change to Customize Documentation shown in Documentation=>Display

fixed also for Directors in r23268 (trunk) and r23269 (2.0) Derik Barseghian

04:29 PM Bug #4802: KARs in KeplerData/workflows are being parsed on startup

is that a "yes"? ben leinfelder

04:21 PM Bug #4797: Verify that multiple workflow/actor KARs work as expected

actor and director kars have been combined in head, closing this bug. Aaron Aaron

04:14 PM Bug #4858: Open Actor on non-composite actors no longer works

(In reply to comment #13)
> This happened for me today too, as I was going through testing the examples in
> the Docu... debi staggs

03:45 PM Bug #4858: Open Actor on non-composite actors no longer works

This happened for me today too, as I was going through testing the examples in the Documentation. debi staggs

04:12 PM Bug #4081: Rework Appendix B

(In reply to comment #5)
> (In reply to comment #4)
> > Originally, I had wanted to keep all of the screen shots cons... debi staggs

04:09 PM Bug #4081: Rework Appendix B

(In reply to comment #4)
> Originally, I had wanted to keep all of the screen shots consistent, however,
> it's going... debi staggs

03:42 PM Bug #4081: Rework Appendix B

Originally, I had wanted to keep all of the screen shots consistent, however, it's going to take a lot of work to do ... Chad Berkley

03:16 PM Bug #4081: Rework Appendix B

Reviewed the R appendix - some minor typos corrected, but no glaring omissions re: functionality. I was concerned abo... ben leinfelder

11:37 AM Bug #4081: Rework Appendix B

updated links to NCEAS R reference material. Links are as follows (thanks, Rick).
http://www.nceas.ucsb.edu/scicom... Chad Berkley

10:50 AM Bug #4081: Rework Appendix B

Updated links, proof-read. Need NCEAS links to work. Sent email to shaun and rick asking about missing pdfs.
http:... Chad Berkley

04:06 PM Bug #4077: Rework Section 8

only a couple minor things.
we do need to be aware of the act that the R examples are located in a the r module, not ... ben leinfelder

11:06 AM Bug #4077: Rework Section 8

updated all links. reviewed and revised content. asking ben to make sure we're not missing anything with the additi... Chad Berkley

03:41 PM Bug #4074: Rework Section 5

Done updating section 5. Chad Berkley

01:13 PM Bug #4865: Second time running a workflow by command line faild

Working now for Jing and I, closing. Derik Barseghian

01:08 PM Bug #4865: Second time running a workflow by command line faild

This was the problem Ben fixed the other day, but began recurring again probably because of my changes in r23263, but... Derik Barseghian

12:28 PM Bug #4865: Second time running a workflow by command line faild

I ran into this also. I think the LSID is getting put in the cache, then when you try to run the WF from the kar file... Chad Berkley

12:24 PM Bug #4865 (Resolved): Second time running a workflow by command line faild

I use the following command to run a workflow:
java -classpath build-area/lib/ant.jar:kepler.jar org.kepler.build.ru... Jing Tao

01:12 PM Bug #4860: GUI-free class for Workflow Run Export

Works now for Jing and I at r23265, closing. Derik Barseghian

12:49 PM Bug #3976: Update Documentation for 2.0 release

Chapter One of the user's guide links and screen shots have been updated. Asking Chad to review section 1.4 Future G... debi staggs

12:22 PM Bug #4864 (Resolved): Update paths in demo workflows

After RC1 is cut, update all file paths in the demo workflows to use the module-X.0 format. Chad Berkley

11:16 AM Bug #4076: Rework Section 7

The documentation is almost done. Several small issued to be discussed with Ilkay. jianwu jianwu

10:36 AM Bug #4078: Rework Section 9

Updated all links and proof-read. Sent an email to Ilkay asking her to review the content as I don't know enough abo... Chad Berkley

10:22 AM Bug #4078: Rework Section 9

I'll take this one. Chad Berkley

10:21 AM Bug #4079: Rework Section 10

done. Chad Berkley

03/02/2010

02:32 PM Bug #4858: Open Actor on non-composite actors no longer works

I did:
mkdir kepler-2.0
cd kepler-2.0
svn co https://code.kepler-project.org/code/kepler/branches/releases/release-... Christopher Brooks

11:22 AM Bug #4858: Open Actor on non-composite actors no longer works

Christopher,
your fix does not work for me. Is there something else you did? The ptolemy-8.0/src directory is alr... Chad Berkley

10:51 AM Bug #4858: Open Actor on non-composite actors no longer works

Hmm, the .classpath file does include the ptolemy src directory in the classpath. I'm currently looking into why thi... Chad Berkley

02:30 PM Bug #4851: KarEntryAttributes not saved in MANIFEST.MF/KarXML

fixed Aaron Aaron

01:31 PM Bug #4845: KAR dependencies not properly supporting module versions

Seems to be OK now. Aaron Aaron

09:54 AM Bug #4860 (Resolved): GUI-free class for Workflow Run Export

I'm trying to get the command-line execution working where I run a KAR and it produces a run KAR with the workflow/la... ben leinfelder

08:26 AM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)

GDAL probably just needs to be recompiled for this architecture, and the installer adapted to detect which architectu... Matt Jones

07:41 AM Bug #4859 (In Progress): GDALTranslate does not work on Windows 7 (64bit)

GDALJniGlue fails to intialize on Windows 64bit operating systems.
ptolemy.kernel.util.IllegalActionException: i... Tom Parris

07:31 AM Bug #3205: gdalTranslate actor crashes on bad format and won't work with all gdal formats

We're having a similar problem on the 2.0.0 trunk. This is a trivial workflow that attempts to convert an ERDAS IMG ... Tom Parris

03/01/2010

09:59 PM Bug #4826: intermittent exceptions displaying matrix tokens

Fixed.
The problem was that actor.gui.MatrixPane has a public variable JTable table.
This variable should only be use... Christopher Brooks

02:01 PM Bug #4826: intermittent exceptions displaying matrix tokens

This bug does not seem to affect functionality, so I'm moving it to 2.x.y Christopher Brooks

06:09 PM Bug #4858: Open Actor on non-composite actors no longer works

I can reproduce this under Kepler trunk with Eclipse.
The workaround is to add ptolemy/src to the classpath.
How I ... Christopher Brooks

05:39 PM Bug #4858: Open Actor on non-composite actors no longer works

Also happens to me from trunk from within eclipse. Maybe another eclipse user can see if it happens to them too... Derik Barseghian

05:06 PM Bug #4858: Open Actor on non-composite actors no longer works

Hmm, reopening. So even with the ptolemy revision confusion aside, on a fresh checkout of the branch, this error does... Derik Barseghian

03:08 PM Bug #4858: Open Actor on non-composite actors no longer works

Thanks guys. I wasn't seeing a bunch of ptolemy updates from within eclipse. I've updated with ant update, and it's w... Derik Barseghian

02:54 PM Bug #4858: Open Actor on non-composite actors no longer works

Oh, I should also note that I updated the context menu configuration last week to match up with some new ptolemy menu... Chad Berkley

02:50 PM Bug #4858: Open Actor on non-composite actors no longer works

I just tried this with the 2.0 branch and it worked for me. Have you tried a fresh checkout, derik? Also, are you u... Chad Berkley

02:36 PM Bug #4858: Open Actor on non-composite actors no longer works

Hey Christopher,
Thanks, it works for me on trunk too, I should've tried that and also specified: this is currently a... Derik Barseghian

02:34 PM Bug #4858: Open Actor on non-composite actors no longer works

[Sorry, committed before being done].
I can't reproduce this. I'm running the Kepler devel tree
from the ptII head.... Christopher Brooks

02:22 PM Bug #4858: Open Actor on non-composite actors no longer works

Hmm, this works for me in the Kepler devel tree and the Ptolemy tree.
I'm running from the Christopher Brooks

01:44 PM Bug #4858 (Resolved): Open Actor on non-composite actors no longer works

Drag a Display to canvas, right-click Open Actor and you'll get an Error popup:
Cannot find a tableau or the source ... Derik Barseghian

11:57 AM Bug #4857: Search on ecogrid server does not return proper results

Fixed in r23242. Changed the ecogrid XML query document in a similar way to the way Ben told me to modify the query f... Sean Riddle

11:50 AM Bug #4857 (Resolved): Search on ecogrid server does not return proper results

I uploaded a test workflow called count.kar (LSID = 8097.16.1) to the Kepler dev repository. I then searched on term ... Sean Riddle

11:15 AM Bug #4848: only first change to Customize Documentation shown in Documentation=>Display

I've filed a bug and an ER against vergil re: an NPE on Get Documentation on actor ports, and Customize Documentation... Derik Barseghian

02/27/2010

04:28 PM Bug #4802: KARs in KeplerData/workflows are being parsed on startup

ReportLayoutKAREntryHandler.cache
WorkflowManager.getWorkflows
WorkflowManager.initialize
ObjectManager.getObjectRevi... Aaron Aaron

02/26/2010

08:27 PM Bug #4848: only first change to Customize Documentation shown in Documentation=>Display

fixed for workflows and actors in r23238. Derik Barseghian

05:10 PM Bug #4848: only first change to Customize Documentation shown in Documentation=>Display

The problem is with calling Show Documentation (which calls GetDocumentationAction) twice.
On the first call to Get... Derik Barseghian

07:09 PM Bug #4852 (Resolved): Documentation => Remove Customization doesn't work

If you Customize Documentation on a workflow or an actor, Remove Customization doesn't remove it. Derik Barseghian

03:26 PM Bug #4802: KARs in KeplerData/workflows are being parsed on startup

I can see the cache() method will eventually call the ObjectManager. is this the culprit that forces parsing of the m... ben leinfelder

03:13 PM Bug #4851: KarEntryAttributes not saved in MANIFEST.MF/KarXML

Yeah, looks like KARBuilder.prepareManifest() only adds certain attributes to the Manifest. Really it should enforce ... Aaron Aaron

03:09 PM Bug #4851 (Resolved): KarEntryAttributes not saved in MANIFEST.MF/KarXML

I'm trying to add some key metadata entries to the KAREntries I provide in the ReportInstanceKAREntryHandler. I can s... ben leinfelder

02:29 PM Bug #4828: Uploading a top-level workflow to the repository fails

Now the DOCTYPE is screened out from fragments prior to constructing the larger KAR XML document. Sean Riddle

01:31 PM Bug #4828: Uploading a top-level workflow to the repository fails

targeting for 2.0 ben leinfelder

02:05 PM Bug #4797: Verify that multiple workflow/actor KARs work as expected

Also combined directors-2.0 kars into one kar. do a
"rm ~/KeplerData/modules/directors-2.0/kar/*.kar"
and also an ... Aaron Aaron

01:46 PM Bug #4797: Verify that multiple workflow/actor KARs work as expected

I have combined all the actors in the actors-2.0 module into 1 kar. Recommended to "rm ~/KeplerData/modules/actors-2... Aaron Aaron

11:54 AM Bug #4799: "Login Anonymously" gave an error during the data search

Refactored the anonymous login configuration to be at the Domain class rather than the Repository class.
-adds config... ben leinfelder

10:53 AM Bug #4799: "Login Anonymously" gave an error during the data search

Ugh. We still have two different systems for managing our various "remote services":
-Repositories (components)
-Ecog... ben leinfelder

10:38 AM Bug #4799: "Login Anonymously" gave an error during the data search

I figured it out!
when you try to use the "Login Anonymously" button, the authentication service will try to look of... ben leinfelder

09:16 AM Bug #4849: ant eclipse fails

Fixed. Forgot to add some new files to the repository. David Welker

09:10 AM Bug #4849: ant eclipse fails

I should mention this is on trunk ben leinfelder

09:10 AM Bug #4849 (Resolved): ant eclipse fails

[eclipse] java.io.FileNotFoundException: /Users/leinfelder/workspace_kepler/kepler/build-area/resources/eclipse/Ptole... ben leinfelder

02/25/2010

05:55 PM Bug #4848 (Resolved): only first change to Customize Documentation shown in Documentation=>Display

If I right-click Documentation=>Customize Documentation on an actor, I can change the documentation, and Documentatio... Derik Barseghian

05:28 PM Bug #4337: 1.0 -> 2.0 upgrade issues tracking bug

All tasks are closed. Closing this tracking bug. Chad Berkley

03:27 AM Bug #4337: 1.0 -> 2.0 upgrade issues tracking bug

Are there any remaining tasks for this bug? David Welker

05:27 PM Bug #4811: No "Get Metadata" item on right-click menu after dragging an EML actor to the canvas

Fixed in rev 23213. Chad Berkley

05:10 PM Bug #4847 (Resolved): Instantiating new actor from library gives error after restart

Steps:
- On 2.0 branch, drag out e.g. an ImageJ actor, and e.g. change its name and customize its documentation
- r... Derik Barseghian

03:45 PM Bug #4846: error opening kar from local repository

I also noticed that, after restarting Kepler, the KAR and local repository *are* listed in the components pane, but t... Oliver Soong

03:38 PM Bug #4846: error opening kar from local repository

I just noticed, but I'm getting 2 of these errors every time I save to the local repository:
ERROR (org.kepler.obje... Oliver Soong

02:50 PM Bug #4846 (Resolved): error opening kar from local repository

This is with wrp at r23202. I deleted .kepler and KeplerData. I create a trivial workflow (default SDF and RExpress... Oliver Soong

03:17 PM Bug #3976: Update Documentation for 2.0 release

All of the screenshots and hyperlinks for the getting started guide have been updated. debi staggs

02:37 PM Bug #4845 (Resolved): KAR dependencies not properly supporting module versions

The KAR dependencies are not being properly matched to module names and versions. Aaron Aaron

01:28 PM Bug #4801: out of memory

There's another way to trigger a memory leak. I'm not sure if these are 2 different leaks or 2 symptoms of the same ... Oliver Soong

11:55 AM Bug #4727: Cannot compile Ptolemy from IntelliJ

I have fixed this so that Intellij's class path is determined in a manner more similar to the build. David Welker

11:54 AM Bug #4709: error updating ptolemy/src

I have fixed this so that if ptolemy/src is not present due to a problem with checkout, "ant update" will attempt to ... David Welker

11:37 AM Bug #4831: Kepler (trunk) couldn't save a workflow to a remote repository as kar file

I just tried and it works. Jing Tao

08:44 AM Bug #4830: Kepler exit when using echoGridWriter actor with the wrong xml path.

Jing, my test on 2.0 branch works. Thanks. jianwu jianwu

03:11 AM Bug #3027: jar handling issues

This older bug can be closed. Multiple versions of the same jar can now be handled through either overrides or a spec... David Welker

02/24/2010

05:54 PM Bug #4830: Kepler exit when using echoGridWriter actor with the wrong xml path.

This issue was caused on PutServiceClient.java. Aprivate method on this class called System.exit(1) when it caught an... Jing Tao

01:50 PM Bug #4830: Kepler exit when using echoGridWriter actor with the wrong xml path.

make it available at kepler-dev. jianwu jianwu

12:38 PM Bug #4830 (Resolved): Kepler exit when using echoGridWriter actor with the wrong xml path.

The message for the execution of the attached workflow.
[run] EcogridUtils: The time to create instance is =... jianwu jianwu

01:45 PM Bug #4811: No "Get Metadata" item on right-click menu after dragging an EML actor to the canvas

Fixed the missing director rt. click menu items. this was due to a menu reorg on the ptII side. Still working on th... Chad Berkley

11:11 AM Bug #4811: No "Get Metadata" item on right-click menu after dragging an EML actor to the canvas

On wrp suite (kepler trunk), I saw the "Get Metadata" menu item after right click an eml actor on an existed workflow... Jing Tao

10:26 AM Bug #4811: No "Get Metadata" item on right-click menu after dragging an EML actor to the canvas

The right click menu works if you rt click on the item in the library. I'll see if I can add this to the right click... Chad Berkley

01:11 PM Bug #4832: python actor outputting to disconnected composite output throws error

I take back the part about it affecting the 2.0 branch. I can't keep my windows straight. It is affecting wrp. Oliver Soong

01:09 PM Bug #4832: python actor outputting to disconnected composite output throws error

This seems to affect the 2.0 Kepler branch. Oliver Soong

01:07 PM Bug #4832 (Resolved): python actor outputting to disconnected composite output throws error

I have a composite actor with an output port. Inside, I have an Expression passing a token to the default python act... Oliver Soong

12:41 PM Bug #4831 (Resolved): Kepler (trunk) couldn't save a workflow to a remote repository as kar file

On Kepler(trunk):
1. Open the eml-simple-plot.moml file.
2. Select my host as a saving destination (click source bu... Jing Tao

10:10 AM Bug #4517: Verify that the search capabilities work

To close this bug, close bug 4462 and bug 4799 Chad Berkley

10:08 AM Bug #4517: Verify that the search capabilities work

Except bug 4462 and 4799, the others function seems working Jing Tao

10:05 AM Bug #4799: "Login Anonymously" gave an error during the data search

The error message has gone. However,the GUI showed three times when I kept clicking the "Login Anonymously" button. ... Jing Tao

02/23/2010

06:22 PM Bug #4829 (New): User log4j files

We had a request that users' be able to maintain their own log4j files, e.g. in an environment where many users use t... Derik Barseghian

03:17 PM Bug #4828 (Resolved): Uploading a top-level workflow to the repository fails

Uploading a top-level workflow attempts to put the whole workflow, complete with doctype tag, into the KAR XML it the... Sean Riddle

12:58 PM Bug #4010: RExpression2 - tracking for backwards compatibility

First ... apologies. I just submitted an RExpression bug that you've already fixed in Rexpression2 (column major matr... Tom Parris

12:38 PM Bug #4827 (New): RExpression does not handle matrix tokens correctly.

I've attached a simple workflow that demonstrates a bug in the way the RExpression actor translates Kepler/Ptolemy ma... Tom Parris

10:41 AM Bug #4820: Out of memory Error: Error creating alternateGetMoml!

I think this was a problem with left over data from the provenance suite. I cannot replicate this. Closing for now.... Chad Berkley

10:40 AM Bug #4801: out of memory

I am not able to reproduce this in the kepler suite. I think this is a WRP/Provenance problem. I'm going to retarge... Chad Berkley

10:36 AM Bug #4826: intermittent exceptions displaying matrix tokens

I saw this in Ptolemy, so it is a Ptolemy bug, not a Kepler bug. I'll see if I can fix it before the final version of... Christopher Brooks

10:23 AM Bug #4826: intermittent exceptions displaying matrix tokens

Forgot to specify platform. Tom Parris

10:22 AM Bug #4826 (Resolved): intermittent exceptions displaying matrix tokens

I experience intermittent exceptions displaying matrix tokens in a simple workflow. The problems are more frequent w... Tom Parris

10:35 AM Bug #4516: Module Manager needs ability to install modules needed by KARs

Since 4483 is pushed to 2.x, pushing this one as well. most of the functionality is there, we just need a bit more t... Chad Berkley

10:34 AM Bug #4685: Create installers

verify that R can not be installed without not installing the entire R module. Chad Berkley

10:33 AM Bug #4803: Review the README file

Need to get a new contributor list. Chad Berkley

10:24 AM Bug #4799: "Login Anonymously" gave an error during the data search

this is not fixed for me. After merging the changes from the trunk to the branch, I have to click the "login anonymo... Chad Berkley

09:46 AM Bug #4578: tracking bug for changes to .kepler

Since 4785 has been closed, I don't think we're going to make any more changes to .kepler, so I'm closing this tracki... Chad Berkley

02/22/2010

04:11 PM Bug #4820: Out of memory Error: Error creating alternateGetMoml!

O.K. neglected to mention that I had cleared the KeplerData > modules > provenance data. Maybe that could have someth... debi staggs

04:05 PM Bug #4820: Out of memory Error: Error creating alternateGetMoml!

In Kepler. But just downloaded the new build for 2.0 branch, and now cannot replicate it. Will try a few more times... debi staggs

03:59 PM Bug #4820: Out of memory Error: Error creating alternateGetMoml!

What suite is this happening in? Kepler or WRP or other? Chad Berkley

03:06 PM Bug #4820: Out of memory Error: Error creating alternateGetMoml!

How big is the KeplerData folder (specifically, KeplerData/modules/provenance), and if you try this again, do you get... Oliver Soong

02:45 PM Bug #4820 (Resolved): Out of memory Error: Error creating alternateGetMoml!

While stepping through the examples in the documentation, I did the following:
1. Clicked on the Data tab and did ... debi staggs

03:57 PM Bug #4483: Module dependencies in MoML files

pushing to post 2.0 release. Chad Berkley

02:34 PM Bug #4802: KARs in KeplerData/workflows are being parsed on startup

This only seems to be a problem with KARS that use the ReportLayoutKAREntryHandler. Aaron Aaron

01:54 PM Bug #4261: Long file name on windows

Just an update on the long-line length problem.
The issue is that certain file systems have limits
and svn makes the ... Christopher Brooks

01:44 PM Bug #4799: "Login Anonymously" gave an error during the data search

This has now been fixed. debi staggs

02/19/2010

05:01 PM Bug #4727: Cannot compile Ptolemy from IntelliJ

Yeah, I will be working on this. In the meantime, we can just patch the individual IDEs so that they work for everyone. David Welker

04:59 PM Bug #4727: Cannot compile Ptolemy from IntelliJ

This bug has cropped up again, this time also affecting Eclipse (and presumably NetBeans as well). The solution, acco... Sean Riddle

01:08 PM Bug #4815 (New): Need a target to build kepler-styles.jar

On kepler 1.0.0, there was a target to build kpelr-styles.jar from eml repository. However, it was removed from keple... Jing Tao

01:06 PM Bug #4807: GetMetadata does nothing

In eml module, duplicated parameters were removed on eml-settings.xsl and eml-identifiers.xsl. Use a new target in em... Jing Tao

02/18/2010

05:18 PM Bug #4812 (New): local repository KAR [right click]->Delete fails when file does not exist

Save a KAR to a local repository, then delete the file outside Kepler, then from the components tree right click the ... Oliver Soong

03:48 PM Bug #4804: copy/paste relation changes width from Auto to 1

I'm not 100% sure this is the same bug, but if I delete the actors and relation, then undo the change, the relation w... Oliver Soong

03:48 PM Bug #4798: Create parser for KAR XML specification

this is a 2.0 bug in that it is blocking the component search bug ben leinfelder

03:46 PM Bug #4798: Create parser for KAR XML specification

https://code.kepler-project.org/code/kepler/trunk/modules/core/src/org/kepler/kar/karxml/KARFile.xsd
is what exists ... ben leinfelder

12:51 PM Bug #4798: Create parser for KAR XML specification

As far as I know, no. That's a good point. I'll leave this open until there's some soft of official schema to check a... Sean Riddle

12:47 PM Bug #4798: Create parser for KAR XML specification

is there a complete XSD now? ben leinfelder

11:04 AM Bug #4798: Create parser for KAR XML specification

Wrote initial implementation. I'll leave this bug open for a day or two for interested parties (especially those invo... Sean Riddle

01:42 PM Bug #4811 (In Progress): No "Get Metadata" item on right-click menu after dragging an EML actor to the canvas

After dragging an EML actor from search result panel to canvas, there was a right-click menu item named "Get Metadata... Jing Tao

01:40 PM Bug #4810 (New): [right click]->Save Archive (KAR) on composite actor borks port attributes

Open the example MOML and save the composite actor as a KAR file. If you extract the MOML from the KAR, you'll see e... Oliver Soong

01:14 PM Bug #4808: ant clean-cache fails, NoClassDefFoundError, org/apache/commons/logging/LogFactory

This is fixed. Logging and third-party libraries should generally be kept out of the build. If you need a third-party... David Welker

12:51 PM Bug #4808: ant clean-cache fails, NoClassDefFoundError, org/apache/commons/logging/LogFactory

I am working on this bug now. It will be fixed shortly. David Welker

12:02 PM Bug #4808 (Resolved): ant clean-cache fails, NoClassDefFoundError, org/apache/commons/logging/LogFactory

Chris first reported this by e-mail, but I'm still seeing it. Aaron, svn says you put these lines in.
java.lang.N... Oliver Soong

12:51 PM Bug #4809: Kepler storing authenticated search results

I'm not sure the search is being performed on the server. All I know is I'm not being asked to authenticate again. Oliver Soong

12:45 PM Bug #4809: Kepler storing authenticated search results

this has long been the case for datasets that have already been downloaded/cached - if you restart Kepler you don't n... ben leinfelder

12:18 PM Bug #4809 (New): Kepler storing authenticated search results

From a clean cache, start Kepler and search using authenticated sources. Authenticate and Kepler will return search ... Oliver Soong

12:02 PM Bug #4807: GetMetadata does nothing

I can see a error on console:
[run] ERROR: 'jar:file:/home/tao/project/kepler/core/lib/jar/kepler-styles.jar!/style/... Jing Tao

11:49 AM Bug #4807 (Resolved): GetMetadata does nothing

Search for any data, right click on a search result, and select the only option, "GetMetadata". This does not seem t... Oliver Soong

11:44 AM Bug #4805: searching for data gives an NPE

It turned out that the NPE exception didn't affect the search result. But it still was annoying. We added a checking ... Jing Tao

02/17/2010

06:50 PM Bug #4793: Workflow Run Manager - clicking on row when provenance is off gives error

You also can't delete rows when provenance is off, because getDefaultProvenanceRecorder will return a Recording in th... Derik Barseghian

05:48 PM Bug #4797: Verify that multiple workflow/actor KARs work as expected

I have created a KAR file that contains all the actors in the actors module. I called it CoreActors.kar and attached... Aaron Aaron

04:11 PM Bug #4806 (New): add output port to Throw Exception

In some of my workflows, I have an actor that checks that certain components are installed and working before trying ... Oliver Soong

03:52 PM Bug #4805 (Resolved): searching for data gives an NPE

I searched for Kruger on both KNB and DEV using both authenticated and unauthenticated searches. I authenticated as ... Oliver Soong

03:34 PM Bug #4804: copy/paste relation changes width from Auto to 1

I can replicate this in Ptolemy
1. Right click on the relation and select "Configure". Note that the width is
set ... Christopher Brooks

03:26 PM Bug #4804 (Resolved): copy/paste relation changes width from Auto to 1

Drag 2 actors to the canvas and join them with a relation. Copy the actors and relation and immediately paste it. T... Oliver Soong

03:19 PM Bug #4801: out of memory

I suggest using JProfiler to track this down. They have a trial offer. Edward and I have licenses. I don't have th... Christopher Brooks

02:57 PM Bug #4801: out of memory

After getting the out of memory error, I generated a heap histogram, restarted Kepler, and generated another heap his... Oliver Soong

02:13 PM Bug #4801 (In Progress): out of memory

ERROR: RecordingException: Unable to query data table: out of memory
I opened tpc01, ran it, closed it, opened tpc... Oliver Soong

02:50 PM Bug #4803 (Resolved): Review the README file

Need to review the readme for factual accuracy and new content additions. Chad Berkley

02:44 PM Bug #4802: KARs in KeplerData/workflows are being parsed on startup

Ben can you email me the workflow that you're having problems with? Aaron Aaron

02:13 PM Bug #4802 (Resolved): KARs in KeplerData/workflows are being parsed on startup

When I launch Kepler with a clean cache but with a workflow sitting in my local workflow directory that uses protecte... ben leinfelder

02:43 PM Bug #4578: tracking bug for changes to .kepler

I would argue against having a task to clean the persistent directory. It's supposed to be persistent and not have t... Chad Berkley

02:35 PM Bug #4578: tracking bug for changes to .kepler

The kar directories that used to be in the cache are now in the KeplerData directory, so they are not deleted/rebuilt... Aaron Aaron

02:27 PM Bug #4578: tracking bug for changes to .kepler

ant clean-cache deletes .kepler/cache-2.0.0 in r23085 Derik Barseghian

02:12 PM Bug #4578: tracking bug for changes to .kepler

(In reply to comment #11)
> 'ant clean-cache' seems to not be deleting anything at the moment. shouldn't
> it?
Whoop... Derik Barseghian

02:06 PM Bug #4578: tracking bug for changes to .kepler

'ant clean-cache' seems to not be deleting anything at the moment. shouldn't it? ben leinfelder

01:55 PM Bug #4792: NPE from Eml200DataSource

Now giving an actual message for the NPE and throwing it up the chain. ben leinfelder

01:41 PM Bug #4792: NPE from Eml200DataSource

i'll take this. ben leinfelder

12:41 PM Bug #4800 (Resolved): CacheManager can not insert WorkflowRun into cache

When you export a run, CacheManager's insertObject cannot insert WorkflowRun entries into cache. This is because the ... Derik Barseghian

12:26 PM Bug #4789: multiport input to composite actor seems to only pass first token

Inside the composite, the relation between the multiport and the RExpression has width 1. I'm not sure how or why it... Oliver Soong

11:26 AM Bug #4789: multiport input to composite actor seems to only pass first token

If I listen to the multiport input on the RExpression inside the composite, I see one token on a single channel. If ... Oliver Soong

10:03 AM Bug #4764: ProvenanceRecorder.changeExecuted slow after workflow run

I finally remembered that I can look directly at the provenance db while Kepler's running. I just deleted all the ru... Oliver Soong

02/16/2010

04:38 PM Bug #4799 (Resolved): "Login Anonymously" gave an error during the data search

After running Kepler, I typed the word "Datos" on the Search Data field and clicked search button. An Authentication ... Jing Tao

04:32 PM Bug #4798 (Resolved): Create parser for KAR XML specification

Create a parser for the new KAR XML format, for use especially when it is returned from a metacat query. Sean Riddle

03:51 PM Bug #4797 (Resolved): Verify that multiple workflow/actor KARs work as expected

The KAR system was written to allow for storing multiple actors/workflows inside the KAR. This has not been well tes... Aaron Aaron

02:20 PM Bug #4730: Kepler cannot run workflows stored in KAR files from the command-line.

Running kars is not supported except in a server configuration. The reason for this is that the kar is first sent to... Chad Berkley

02:18 PM Bug #4786: workflow file saved in KAR does not open when extracted

KeplerMetadataExtractor was using Document.getFirstChild() to get the rootNode when it should have been using Documen... Aaron Aaron

02/12/2010

11:59 PM Bug #4702: KAR to module conversion utility

Closing this bug because this feature is not needed at this time. David Welker

03:05 PM Bug #4702: KAR to module conversion utility

> This is an inappropriate conversation for this forum.
And what is the appropriate forum?
> This issue has already... Aaron Aaron

06:01 PM Bug #4764: ProvenanceRecorder.changeExecuted slow after workflow run

I think it's too big to attach, so I've put it here:
http://www.nceas.ucsb.edu/~soong/kepler/provenance%20HSQLDB%20... Oliver Soong

05:22 PM Bug #4764: ProvenanceRecorder.changeExecuted slow after workflow run

Could I get a copy of the large db along with a list of steps performed to create it? Daniel Crawl

04:28 PM Bug #4764: ProvenanceRecorder.changeExecuted slow after workflow run

So I wiped my .kepler and KeplerData, started Kepler (to initialize these folders), and things ran "fast" (1-3 sec pe... Oliver Soong

04:04 PM Bug #4764: ProvenanceRecorder.changeExecuted slow after workflow run

Forgot to answer the question. Sort of. I can reproduce the 3000+ function calls, but they seem to resolve faster, ... Oliver Soong

03:41 PM Bug #4764: ProvenanceRecorder.changeExecuted slow after workflow run

That's correct and expected. recordContainerContents is initiated from changeExecuted, and it's recordContainerConte... Oliver Soong

03:26 PM Bug #4764: ProvenanceRecorder.changeExecuted slow after workflow run

If I run the workflow without accessing the data, and then change the targetYear, I only get 2 or 3 calls to changeEx... Daniel Crawl

08:54 AM Bug #4764: ProvenanceRecorder.changeExecuted slow after workflow run

It's in the Kruger SVN:
https://code.ecoinformatics.org/code/kruger/trunk/workflows/tpc09-plant-dynamics/tpc09-plant... Oliver Soong

08:43 AM Bug #4764: ProvenanceRecorder.changeExecuted slow after workflow run

Could you provide the workflow? Daniel Crawl

05:29 PM Bug #4795: RExpression & cache cleaning

Zactly. Oliver Soong

05:20 PM Bug #4795: RExpression & cache cleaning

Dan H. already had some code in there for managing "too long of strings" for the script input - long numeric arrays c... ben leinfelder

05:14 PM Bug #4795: RExpression & cache cleaning

We could do away with the .sav files. Ben, try this in R:
str <- paste("_data.frame_:", rawToChar(serialize(iris, ... Oliver Soong

04:36 PM Bug #4795: RExpression & cache cleaning

There are a few kinds of files generated by RExpression:
1. complex data transfer from one RExpression actor to anoth... ben leinfelder

04:22 PM Bug #4795: RExpression & cache cleaning

I've noticed this too, and it seems like a good idea to me.
If the RExpression actor put these files into the proven... Matt Jones

04:15 PM Bug #4795 (New): RExpression & cache cleaning

My .kepler cache bloats pretty quickly because of RExpression's temporary files. Can we have RExpression clear it's ... Oliver Soong

03:23 PM Bug #4792: NPE from Eml200DataSource

A better error message instead of NPE would be nice. Daniel Crawl

10:42 AM Bug #4792: NPE from Eml200DataSource

The workflow shouldn't run w/o the data.
What should be happening that isn't currently? Cleaner error? ben leinfelder

10:02 AM Bug #4792 (Resolved): NPE from Eml200DataSource

1. open https://code.ecoinformatics.org/code/kruger/trunk/workflows/tpc09-plant-dynamics/tpc09-plant-dynamics-woody.k... Daniel Crawl

03:16 PM Bug #4791: Actor names no longer have spaces

Sorry a clean-cache should fix this, I think my partially updated version had trouble due to the new cache location... Aaron Aaron

01:12 PM Bug #4791: Actor names no longer have spaces

Oh and also closing this bug Aaron Aaron

01:11 PM Bug #4791: Actor names no longer have spaces

Hey guys, yeah looks like the LibIndex was using the name of the Jar entry found in the manifest and not the name tha... Aaron Aaron

12:06 PM Bug #4791: Actor names no longer have spaces

I looked at this and it looks like the name of the actor is now derived from the name of the kar file. The name of t... Chad Berkley

01:27 PM Bug #4730: Kepler cannot run workflows stored in KAR files from the command-line.

This is actually two bugs.
Bug 1: Spaces in the paths on a workflow run does not work. I found this to be true an... Chad Berkley

12:25 PM Bug #4730: Kepler cannot run workflows stored in KAR files from the command-line.

The spaces aren't the issue. I can run this with no problem:
java -classpath build-area/lib/ant.jar:kepler.jar org.... Chad Berkley

11:49 AM Bug #4456: Workflow Run Manager in Report Viewer

This was fixed - the WRM is in the Report Designer view now and reports show when you click on run rows.
If you just ... Derik Barseghian

11:45 AM Bug #4793 (Resolved): Workflow Run Manager - clicking on row when provenance is off gives error

If you disable provenance and then click on a row in the WRM you get an error:
org.kepler.provenance.QueryExceptio... Derik Barseghian

11:42 AM Bug #4721: wrm gets exception when provenance turned off

Fixed in r23066.
However if you click on any row when prov is turned off you get an error. I'll file a bug for that. Derik Barseghian

02/11/2010

09:51 PM Bug #4764: ProvenanceRecorder.changeExecuted slow after workflow run

The function recordContainerContents is the cause of the slow behavior. It is called from _recordWorkflowContents wh... Oliver Soong

07:21 PM Bug #4764: ProvenanceRecorder.changeExecuted slow after workflow run

I've tracked this down to the ProvenanceRecorder listener on the workflow NamedObj. After running tpc09, I change th... Oliver Soong

12:12 PM Bug #4764: ProvenanceRecorder.changeExecuted slow after workflow run

I profiled Kepler comparing an execution and an execution followed by a parameter change. First, I loaded tpc09 into... Oliver Soong

07:13 PM Bug #4766: Semantic Annotation Editor doesn't close when you click the close button on mac

fixed in r23062 Derik Barseghian

04:40 PM Bug #4791: Actor names no longer have spaces

I'm guessing this is related to the changes to the library/database. Aaron do you know? Derik Barseghian

02:48 PM Bug #4791 (Resolved): Actor names no longer have spaces

At some point the spaces in component names went away. In 1.0 it was e.g. String Constant, but now it's StringConstan... Derik Barseghian

04:33 PM Bug #4458: test for moving kepler directory

Retargeting to post 2.0. Derik Barseghian

04:32 PM Bug #4577: integrate, and separate from save/export, the code for Uploading

This bug is a more of request for refactoring and an RFE (when a remote repository is check-marked, don't always prom... Derik Barseghian

02:43 PM Bug #4790 (Resolved): cmd-click in wrp does not create relation

On a mac, doing a cmd-click in the canvas creates a relation (diamond icon) both in the kepler suite, and kepler 1.0,... Daniel Crawl

02:11 PM Bug #4702: KAR to module conversion utility

Aaron,
This is an inappropriate conversation for this forum. This issue has already been decided. You have already h... David Welker

12:52 PM Bug #4702: KAR to module conversion utility

Thanks David, I agree that it is a non-trivial problem. One that we shouldn't have tried to tackle ourselves. Best ... Aaron Aaron

11:17 AM Bug #4702: KAR to module conversion utility

Aaron,
I don't believe that this is the proper forum for you to air your opinions about the desirability of options ... David Welker

10:53 AM Bug #4702: KAR to module conversion utility

David, thank you for explaining to us why having a centralized modules.txt that contains prioritized dependencies is ... Aaron Aaron

04:13 AM Bug #4702: KAR to module conversion utility

I should point out that there is a less ambitious interpretation of this feature request. And that is, not that we ar... David Welker

04:00 AM Bug #4702: KAR to module conversion utility

Do any actual kar files from 1.0 actually contain jars? If so, is the number sufficient to justify building a utility... David Welker

01:59 PM Bug #4785: move cache object from 1.0 to 2.0

I've been looking at this all morning and I think we should punt on this until after 2.0. We basically need to use t... Chad Berkley

01:49 PM Bug #4580: Error saving/opening KAR that has a workflow with a PortParameter

fixed. Daniel Crawl

12:25 PM Bug #4578: tracking bug for changes to .kepler

changed to always use cache-2.0.0 in r23059. Derik Barseghian

11:01 AM Bug #4789 (Resolved): multiport input to composite actor seems to only pass first token

See attached workflow. The problem is not likely to sit with RExpression itself, as I can move the RExpression actor... Oliver Soong

05:22 AM Bug #4281: ant update produces message about running svn cleanup

Christopher,
I was wondering if you could reproduce this problem still. I just tried to reproduce it using your comm... David Welker

05:07 AM Bug #4328: change-to command checks out across branches

What is the purpose of the -Dbranch option? All branches should be named differently, so this option should not be ne... David Welker

04:31 AM Bug #4311: Build system appears to lock if there is a conflict upon update

This was fixed by Chad in an even better way by taking advantage of command-line options that exist in the svn update... David Welker

04:27 AM Bug #4730: Kepler cannot run workflows stored in KAR files from the command-line.

This bug does not exist when running ant "run-workflow" against an ordinary workflow which is stored in an XML file. ... David Welker

02/10/2010

05:34 PM Bug #4784: Remove or fix and re-enable the fullscreen zoom button

fixed for modules that use tagging in r23056. Derik Barseghian

09:39 AM Bug #4784: Remove or fix and re-enable the fullscreen zoom button

Lets remove it for 2.0. Assigning to Debi. Chad Berkley

05:04 PM Bug #4786 (Resolved): workflow file saved in KAR does not open when extracted

If I save a workflow as a KAR, unjar the KAR, and try to open the workflow xml file, it opens as a text file instead ... Daniel Crawl

03:38 PM Bug #4578: tracking bug for changes to .kepler

After talking w/ Chad and Matt the plan is to mostly leave things as they are. We just need to add version info to so... Derik Barseghian

03:13 PM Bug #4785 (New): move cache object from 1.0 to 2.0

Cache kar objects from 1.0 that contain customized actors (i.e. not those shipped with 1.0) need to be migrated to th... Chad Berkley

03:11 PM Bug #4740: Create Ontology_Catalog sql table in the CORE persistent database

push to 2.X.Y Aaron Aaron

02:50 PM Bug #4723: workflows directory should be moved

kar files are now placed into the persistent data directory at
~/KeplerData/modules/<modulename>/kar
You will need t... Aaron Aaron

11:03 AM Bug #4723: workflows directory should be moved

Workflows directory has been moved into the persistent KeplerData directory. I will also move the module kar directo... Aaron Aaron

09:43 AM Bug #4723: workflows directory should be moved

reassigning to aaron. Chad Berkley

01:18 PM Bug #4580: Error saving/opening KAR that has a workflow with a PortParameter

Reassign to Dan, he's looking at this Derik Barseghian

10:46 AM Bug #4702: KAR to module conversion utility

This bug is for backwards compatibility. Since 2.0 kars do not allow for java classes or jars this utility would all... Aaron Aaron

09:42 AM Bug #4702: KAR to module conversion utility

What was the reason for needing this again? Do we need this for 2.0? Chad Berkley

10:12 AM Bug #4662: roll revision vs. new object ID

At 23040, the revision buttons no longer seem to exist, so I guess these exact symptoms will no longer occur. I'm no... Oliver Soong

10:02 AM Bug #4710: RExpression fails to convert arrayType(niltype)

I think we fixed this in 22692. Oliver Soong

02/09/2010

04:30 PM Bug #4784 (Resolved): Remove or fix and re-enable the fullscreen zoom button

The full-screen button is still in the toolbar and set to do nothing (http://bugzilla.ecoinformatics.org/show_bug.cgi... Derik Barseghian

04:19 PM Bug #3172: windows mouse wheel doesn't scroll canvas

Retargeting this bug to 2.X.Y.
Some related scrolling issues were brought up by Peter during yesterday's REAP call:
... Derik Barseghian

03:56 PM Bug #4783 (New): Standardize workflow parsing to get parameters

There are a few different approaches (SciencePipes, CAMERA, UCGrid, Hydrant, etc.) to get workflow parameters from an... Ilkay Altintas

03:41 PM Bug #4462: Component search in remote repositories not working

then there's a sample of this "kar metadata" file that aaron uploaded here:
http://kepler-dev.nceas.ucsb.edu/kepler/m... ben leinfelder

03:36 PM Bug #4462: Component search in remote repositories not working

if you go on Keper-dev's "dev skin" and search using this squery, you can see the "kar" metadata is returned.
(URL: h... ben leinfelder

03:34 PM Bug #4462: Component search in remote repositories not working

Need to verify with Aaron, but I believe:
components are now being uploaded using a new XML metadata format (a wrappe... ben leinfelder

03:25 PM Bug #2493: actor repository tracking bug

adding dependencies... ben leinfelder

03:04 PM Bug #4781: Use the KarXmlGenerator to create the xml metadata sent to the metacat server during "Upload To Repository" action

KAR Uploads from Kepler now use the new KarXml format. Aaron Aaron

02:01 PM Bug #4697: Semantic Annotation does not increment LSID revision

fixed in r23035 Derik Barseghian

01:55 PM Bug #4782: configuration files do not load with non en_US locale

fixed in r23033. Thanks Chad! Daniel Crawl

12:06 PM Bug #4782: configuration files do not load with non en_US locale

added a method to use a default locale tagged file if the currently set locale is not available. Chad Berkley

11:00 AM Bug #4782 (Resolved): configuration files do not load with non en_US locale

If the locale is not set to en_US, the configuration files do not load. I can reproduce this on my mac by:
export ... Daniel Crawl

11:11 AM Bug #4373: Copyright Statements are Inconsistent

added a flag to update the copyrights for tests. all tests are now updated. Chad Berkley

10:48 AM Bug #4373: Copyright Statements are Inconsistent

The sources in tests/src/ have old and inconsistent copyrights. Daniel Crawl

02/08/2010

06:00 PM Bug #4781 (Resolved): Use the KarXmlGenerator to create the xml metadata sent to the metacat server during "Upload To Repository" action

Use the KarXmlGenerator class to create the xml metadata sent to the metacat server during "Upload To Repository" action Aaron Aaron

05:57 PM Bug #4704: Generate XML for a KARFile

I created one junit test that reads in a test kar file (that I put in the same directory as the Junit test, I guess t... Aaron Aaron

03:51 PM Bug #4773 (New): Data processing on the GPP

Do we allow data processing on the GPP unit? Could it be a Kepler workflow, e.g., for quick QA?QC. Ilkay Altintas

03:49 PM Bug #4762: create gui to control sensor from kepler

How does an issued command go from Kepler to sensor? A sequence diagram showing all the components would be good to e... Ilkay Altintas

03:45 PM Bug #4756: allow saving of sensor workflow output

This could be separated into two different bugs: (a) for writing to Metacat and
(b) for writing to DataTurbine Ilkay Altintas

03:44 PM Bug #4756: allow saving of sensor workflow output

This could be separated into two different bugs: (a) for writing to Metacat and one for writing to DataTurbine Ilkay Altintas

03:42 PM Bug #4755: update workflow run manager and reporting to display runs of sensor workflows

An example report (what comes up when you click on a row for the example site in figure 1) is needed to understand th... Ilkay Altintas

03:39 PM Bug #4754: update metacat workflow execution scheduler

This bug should include the documentation of how to set up the server, how to configure it, etc. Ilkay Altintas

03:34 PM Bug #4753: create gui for scheduled execution of sensor workflows on server

This should have an option to run a workflow continuously.
Another idea is, can we change the frequency of a workflo... Ilkay Altintas

03:30 PM Bug #4752: create a sensor plots gui

What other visualization of data can we come up with in addition to plotting? Ilkay Altintas

03:28 PM Bug #4751: implement "run" for site layout

What director will be used to run the layout? Ilkay Altintas

03:23 PM Bug #4748: create google earth kml from component coordinates

Any other mapping interface? Ilkay Altintas

03:17 PM Bug #4745: load & save site layout to metacat

Another way of doing site documentation(Figure 1 in https://kepler-project.org/developers/incubation/kepler-engineeri... Ilkay Altintas

03:11 PM Bug #4743: create gui to edit documentation metadata for component

Do we know if there's missing information? Are there optional fields and how do they effect the design? Ilkay Altintas

03:08 PM Bug #4742: create engineering view model type

As a start:
1. Does an engineering workflow only produce commands to control, etc. the sensors? Using what actor and ... Ilkay Altintas

03:06 PM Bug #4742: create engineering view model type

We need a definition and distinctionof what scientific workflow vs. engineer workflow is. This could also be thought ... Ilkay Altintas

02:48 PM Bug #4741: create icons for engineering view components

The icons should show explicit input and output ports for easy linking of different entities.
Figure 1 in https://k... Ilkay Altintas