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From 04/28/2009 to 05/27/2009

05/28/2009

05:30 PM Bug #4113 (New): Kepler changes property position in XML but keeps values
This doesn't affect the operation of Kepler, but it makes it a major pain to diff workflows and causes large portions... Oliver Soong

05/27/2009

04:13 PM Bug #4112 (New): make kepler use OSX dialog boxes
Add configuration to the mac extensions to make kepler use the OSX file open/save dialog boxes instead of the default... Chad Berkley
02:47 PM Bug #4111 (Resolved): move test data to a more appropriate locations
Currently, there is ~54 MB of test data in common/lib/testdata. This could be moved to a new module that would be op... Chad Berkley
02:25 PM Bug #4105: Make build system automatically build OS dependent modules
The OS is just a special case of checking for a particular feature
such as a third party library. The build system s...
Christopher Brooks
02:23 PM Bug #4104: Need resource manager to handle objects in the resources directories
Please be sure to review how the Java I18N stuff works.
See
http://java.sun.com/developer/technicalArticles/Intl/Res...
Christopher Brooks
11:11 AM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
Ok, good news that I can build against the ptII head.
The word "update" in "ant update" means something specific, wh...
Christopher Brooks
11:10 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
Hi Christopher,
That was my bad. I forgot to include the names of the new commands in my comment closing the issue.
...
David Welker
06:42 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
I'm confused.
How do I build from the Ptolemy head?
It seem like "ant update" should actually update the tree to t...
Christopher Brooks

05/26/2009

03:49 PM Bug #4093: allow kepler to use OS specific UI elements
fixed. osx kepler now has a new icon set that fit the standard osx icon sizes. please open new bugs for any new Mac ... Chad Berkley
10:31 AM Bug #4093: allow kepler to use OS specific UI elements
fixed the about box. fixed apple-q. The icon shown is now the java icon. Will try to get the kepler icon to work. Chad Berkley
03:47 PM Bug #4067: Add "about" widget for kepler on the mac
Fixed. The mac version of kepler now has an about box, it correctly exits when using apple-q and it has a new icon s... Chad Berkley
03:44 PM Bug #4109: File Reader error message incorrect
fixed it. update ptolemy to see the change. Chad Berkley
02:51 PM Bug #4109 (Resolved): File Reader error message incorrect
The "File Reader" actor (ptolemy.actor.lib.io.FileReader) prints a message
"Failed to write '" + fileOrURL + "'"
...
Chris Weed
12:53 PM Bug #4104: Need resource manager to handle objects in the resources directories
Interesting ideas!
I want to point out a couple of things. First of all, we already have most of this functionality....
David Welker
10:53 AM Bug #4090: You should be able to specify a particular revision number or date with ant update.
As of now, you may specify a revision number with the ant update command. For more recent revisions, specifying a rev... David Welker
07:22 AM Bug #4090: You should be able to specify a particular revision number or date with ant update.
It would be very useful to be able to specify the revision as a date
or a revision number. Checking out by date migh...
Christopher Brooks
10:49 AM Bug #4108 (In Progress): Do more extenstive testing before designating a revision of Ptolemy as stable
Right now, before a revision of Ptolemy is considered "stable" all it must do is be able to compile and the trunk of ... David Welker
10:46 AM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
I agree with you that the word "stable" is better than "blessed" and that is the the word used in one of several new ... David Welker
07:40 AM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
We should use the term "stable" to refer to revisions of Ptolemy and Kepler
that are likely to build for users. A tr...
Christopher Brooks
10:26 AM Bug #4107 (Resolved): Report Designer - Deserialize a ROML and display it back in the Report Layout Designer GUI
We need to be able to deserialize a ROML and display it in the Layout Designer GUI. debi staggs

05/22/2009

01:25 PM Bug #4104: Need resource manager to handle objects in the resources directories
In general I think this is a good idea. But, I could also envision having a number of general search paths for resou... Matt Jones
12:20 PM Bug #4104 (New): Need resource manager to handle objects in the resources directories
This class should have static methods for accessing items in the modules' resources directory. This would allow reso... Chad Berkley
12:25 PM Bug #4105 (Resolved): Make build system automatically build OS dependent modules
There should be a way to tell the build system to automatically build (or not build) modules that are OS dependent so... Chad Berkley
10:24 AM Bug #3764: Kepler needs to support EML 2.1.0
There's no way to add EML 2.1.0 support to Kepler 1.0.0.
We will have a "release" of some sort for the TPC training i...
ben leinfelder

05/21/2009

04:37 PM Bug #4103 (Resolved): Add the capability of creating SECTIONS in the report.
Give the user the ability to group things together in sections in a report. A section should also provide an (option... debi staggs
04:34 PM Bug #4102 (Resolved): Add the ability to insert a static image into the report.
Add the ability to insert a static image into the report. debi staggs
04:25 PM Bug #4101 (Resolved): Report Designer - Create a manager class for the Static Report Items
Currently there is a small list of static report items that we are using in the reporting module, so these items are ... debi staggs
01:20 PM Bug #4092: record all files referred to in array tokens
fixed in r18455. Derik Barseghian
05:53 AM Bug #4097: here are some new svg icons for actors
New icons: bar chart; scatter plot; pie chart; calculator; filter Paul Allen
05:48 AM Bug #4097 (New): here are some new svg icons for actors
We had occasion to need better icons for some of the standard actors. You might want them as well. I will add them as... Paul Allen
06:53 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
priorities:
- use and show kepler-lsid
- work with aaron, dan, et al to determine what goes in pub ready archive.
- a...
Derik Barseghian

05/20/2009

04:35 PM Bug #4095 (New): Java Package Ontology (e.g. to facilitate Ptolemy component access)
Ptolemy has a number of neat components that are currently very hard to get to.
For example, MonitorReceiverContent...
Bertram Ludaescher
04:30 PM Bug #4094 (Resolved): new Unnamed windows should have a suffix that increments
This would help to differentiate windows. Right now each new window has the same name: Unnamed. Derik Barseghian
03:59 PM Bug #3958: REPORT DESIGNER - Delete report items from the report designer
Report items can now be deleted from the report designer canvas, and, of course, the report. : ) debi staggs
03:39 PM Bug #4093 (Resolved): allow kepler to use OS specific UI elements
I've implemented an extension point in kepler to allow us to build OS specific UI tweaks into kepler without breaking... Chad Berkley
02:52 PM Bug #4092 (Resolved): record all files referred to in array tokens
We currently only recording a file if it's in a string token. Ben requests: check all tokens in array tokens to see i... Derik Barseghian
02:44 PM Bug #4091 (Resolved): Make it so the build system can use a "blessed" version of Ptolemy.
gatekeeping mechanism where by we use a "blessed" version of Ptolemy that is very close to the trunk, but not necessa... David Welker
02:40 PM Bug #4090 (Resolved): You should be able to specify a particular revision number or date with ant update.
The ant update command should optionally allow you to specify a revision:
ant update -Drev=12345
All the module...
David Welker
02:34 PM Bug #4089 (Resolved): Ensure that module-manager, loader, and the build system all work with a new versioning system for modules.
The new versioning system must be implemented and tested so that the module-manager, loader, and build system can wor... David Welker
02:32 PM Bug #4088 (Resolved): Create new configuration system
Per our at the Kepler developer's meeting, we need to develop a unified configuration system starting with a prototype. David Welker
02:05 PM Bug #4049: Import actor that already exists appends strange numbering scheme
Re: comment#4, for example, if an actor RExpressionRain2001 is created and saved in the library, when dragged to canv... Derik Barseghian
11:10 AM Bug #4049: Import actor that already exists appends strange numbering scheme
Soong notes that when dragging an actor with name ending in a digit(s) to canvas, the digits are dropped. Derik Barseghian
11:28 AM Bug #4087: No reset/x button to clear component searches
Making the Cancel button useful when a search is not in progress, to do a reset, seems like a good idea to me. If we ... Derik Barseghian
10:52 AM Bug #4087 (New): No reset/x button to clear component searches
Under both linux and Windows, there is currently no way to clear the results of a search on the components tab. Ther... Oliver Soong
11:08 AM Bug #3764: Kepler needs to support EML 2.1.0
Kepler 1.0.0 doesn't support EML 2.1.0. I know we're moving towards a new release, but since the Kruger stuff is sti... Oliver Soong
10:31 AM Bug #4086 (Resolved): Port-Parameters half-work with composite actors
Under the SDF Director, I can create a Composite Actor containing a Port-Parameter and a Display actor. There are 4 ... Oliver Soong
09:06 AM Bug #4062: Web Services and Data Transformation demo throws a StringOutOfBounds
Fixed: looks like the actor relied on its parameters to be set in a specific order. Daniel Crawl
11:22 PM Bug #1750: Allow KAR files to include jar/class files
KAR files used to contain class files, and wer eboth a successful and necessary part of Kepler 1.0. I am reopening t... Matt Jones
08:52 PM Bug #1750: Allow KAR files to include jar/class files
KAR files will not contain class files or JAR files. Classes and jars will be contained within Kepler modules. KAR ... Aaron Aaron
09:22 PM Bug #3939: Kepler Unique LSID Namespace generation
Documentation for the KeplerLSID system will be maintained here:
https://kepler-project.org/developers/teams/framewo...
Aaron Aaron
05:57 PM Bug #3691: JButton labels truncated on macOSX
Refresh button fixed. Closing. For some reason had to comment out setMaximumSize, even though SearchUIJPanel uses the... Derik Barseghian
05:01 PM Bug #4069: Metacat Authenticated Query fails for specific user/group/dataset combinations
Oh, well there's also a problem with the table Woody_Vca_Sites.txt. The preview window wasn't working right probably... Oliver Soong

05/19/2009

04:24 PM Bug #4069: Metacat Authenticated Query fails for specific user/group/dataset combinations
it's not necessarily the Preview function per se - more that I can see many many errors about numeric format exceptio... ben leinfelder
12:18 PM Bug #4069: Metacat Authenticated Query fails for specific user/group/dataset combinations
Can you clarify the problems you're having with the Preview option? I know in some of the tables there are unusual c... Oliver Soong
11:25 AM Bug #4069: Metacat Authenticated Query fails for specific user/group/dataset combinations
if you update from the development trunk, you should now have three different document types available for the KNB Au... ben leinfelder
03:11 PM Bug #4067: Add "about" widget for kepler on the mac
Thanks for the info, Matt. The icon is currently set in the plist file, and it shows up fine in the Finder, but not ... Chad Berkley
10:59 AM Bug #4067: Add "about" widget for kepler on the mac
Handling the About menu is possible and described in the Java Development Guide for Mac OS X:
http://developer.apple....
Matt Jones
10:43 AM Bug #4067: Add "about" widget for kepler on the mac
It would also be nice to figure out how to make the kepler icon show up in the apple-tab list instead of a generic "e... Chad Berkley
10:40 AM Bug #4067: Add "about" widget for kepler on the mac
Possibly need to change a key/value in the Info.plist file, but that won't work for ant runs, only when Kepler is exe... Chad Berkley
10:38 AM Bug #4067: Add "about" widget for kepler on the mac
Found this:
http://developer.apple.com/documentation/Java/Reference/Java_PropertiesRef/Articles/JavaSystemProperties....
Chad Berkley
02:24 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
'Open Workflows in New Windows' context menu now works. I cobbled this together though, and need to clean it up and m... Derik Barseghian
11:23 AM Bug #3673: Create model for the Report Instance (RIO)
The model for the Report Instance (RIO) has been created. debi staggs
11:19 AM Bug #3636: Support multiple Report formats
We support the report formats as follows: .pdf and .html debi staggs
11:19 AM Bug #3764: Kepler needs to support EML 2.1.0
let's reopen if there are other problems that crop up. I think the dataTable parsing is pretty much the same from eml... ben leinfelder
10:41 AM Bug #3764: Kepler needs to support EML 2.1.0
In the Kepler Registry: updated the Query Service and Authenticated Query Service entries to include EML 2.1 doctypes ben leinfelder
10:23 AM Bug #3764: Kepler needs to support EML 2.1.0
I've added a metadata specification class to the util module (like eml 2.0.0 and eml 2.0.1 have).
Also allowed both "...
ben leinfelder
11:18 AM Bug #3608: Create initial class diagrams for the reporting feature.
Class diagrams for reporting have been created. debi staggs
11:17 AM Bug #3640: Identify items of interest in workflow.
The user can flag items of interest by right clicking on a port in the workflow and using the context menu to add it ... debi staggs
11:16 AM Bug #3667: Mock-up Report Designer UI
The report designer mock up was made and the design implemented and refined. debi staggs
11:15 AM Bug #3666: Create RIO schema
The RIO Schema has been created. debi staggs
11:14 AM Bug #3646: Create ROML Schema
The ROML schema has been created. debi staggs
11:13 AM Bug #3641: Create model for ItemOfInterest
The class 'Item' was created, and this is used to build a list of 'items'. This list has references to ports that ap... debi staggs
11:09 AM Bug #3607: Create model for the Report Object
The object models for the report object (ROML) and the Report Instance (RIO)
have both been created.
debi staggs
11:07 AM Bug #3642: Create model for ReportItem
The model for the report items has been created and is working well. debi staggs
11:06 AM Bug #3645: Create report layout designer
Report Layout Designer has been created, and is working. debi staggs
11:04 AM Bug #3934: Report Designer - editable Report Title field
We are now able to edit the title of the report, and it is added to the report model. debi staggs
11:03 AM Bug #3955: Report Designer - static report item: TEXT
The ability to edit the text in a 'Label' static report item has been implemented. debi staggs
11:02 AM Bug #3955: Report Designer - static report item: TEXT
The ability to edit the text in a 'Label' static report item has been implemented. debi staggs
10:59 AM Bug #3959: Report Designer - Highlight and select a report item panel
The ability to highlight and select a report item panel is now working. Panels are selected when the user clicks on ... debi staggs
07:54 AM Bug #4038: The first time ant change-to is run, it prints a stack trace
This is fixed, I can no longer reproduce it. Christopher Brooks
07:48 AM Bug #4053: deleting open composite actor may delete model
This is fixed by changes to PtolemyFrame. Christopher Brooks

05/18/2009

02:48 PM Bug #4069: Metacat Authenticated Query fails for specific user/group/dataset combinations
this is now an EML 2.1.0 document. Kepler does not yet have support for 2.1.0.
Will look into that - there is a bug f...
ben leinfelder
11:07 AM Bug #4051: R - include R distribution in separate module
R is now in it's own module and the installer can install it separately. Chad Berkley
09:49 AM Bug #4082 (Resolved): New user guide section on modules/module manager
Need to write a new section of documentation on modules and the module manager. Other sections need to be able to re... Chad Berkley
09:48 AM Bug #4081 (Resolved): Rework Appendix B
Rework Appendix B of the User Manual for the 2.0
release.
Chad Berkley
09:47 AM Bug #4080 (Resolved): Rework Section 11
Rework Section 11 of the User Manual for the 2.0
release.
Chad Berkley
09:46 AM Bug #4079 (Resolved): Rework Section 10
Rework Section 10 of the User Manual for the 2.0
release.
Chad Berkley
09:45 AM Bug #4078 (Resolved): Rework Section 9
Rework Section 9 of the User Manual for the 2.0
release.
Chad Berkley
09:44 AM Bug #4077 (Resolved): Rework Section 8
Rework Section 8 of the User Manual for the 2.0
release.
Chad Berkley
09:44 AM Bug #4076 (Resolved): Rework Section 7
Rework Section 7 of the User Manual for the 2.0
release.
Chad Berkley
09:43 AM Bug #4075 (Resolved): Rework Section 6
Rework Section 6 of the User Manual for the 2.0
release.
Chad Berkley
09:42 AM Bug #4074 (Resolved): Rework Section 5
Rework Section 5 of the User Manual for the 2.0
release.
Chad Berkley
09:42 AM Bug #4073 (Resolved): Rework Section 4
Rework Section 4 of the User Manual for the 2.0 release. Chad Berkley
09:41 AM Bug #4072 (Resolved): Rework Section 3
Rework Section 3 for the 2.0 release. Chad Berkley
09:40 AM Bug #4071 (Resolved): Rework Section 2
Rework Section 2 of the User Manual for the 2.0 release. Chad Berkley
09:37 AM Bug #4070 (Resolved): Rework Section 1 and the GSG
Rework Section 1 of the User Manual and the Getting Started Guide for the 2.0 release. Chad Berkley
09:27 AM Bug #3976: Update Documentation for 2.0 release
Thanks for volunteering, Jianwu. You've asked a good question, one that I hadn't thought of. I think we just need t... Chad Berkley
09:25 AM Bug #4008: EML 2 Dataset throws errors when accessing public data from mixed public/private datasets
i'm now getting stuck on the initializing step of the workflow... (osx) ben leinfelder
09:08 AM Bug #4068: File Menu should display 5 most recently used workflows
Hi Ben:
Yes, you're right: remembering the last used directory (even if only within a session) is convenient!
If w...
Bertram Ludaescher
08:43 AM Bug #4068: File Menu should display 5 most recently used workflows
Last I knew, the "last used directory" was remembered (unless you restart Kepler). It's very convenient [for me]. ben leinfelder

05/15/2009

04:05 PM Bug #3976: Update Documentation for 2.0 release
I will take care of <Section 7: Using remote computing resources>. One quick question: if we moved some actors (such ... jianwu jianwu
03:15 PM Bug #3976: Update Documentation for 2.0 release
I finished going through all of the documentation in kepler-docs/outreach/documentation/working. I've made changes w... Chad Berkley
01:20 PM Bug #4069: Metacat Authenticated Query fails for specific user/group/dataset combinations
(In reply to comment #0)
> Regetz confirmed this, but he was able
> to search for a private dataset of his own.
The ...
Jim Regetz
12:02 PM Bug #4069 (Resolved): Metacat Authenticated Query fails for specific user/group/dataset combinations
The problem affects several datasets with similar access permissions, such as judithk.769.12.
These datasets are n...
Oliver Soong
05:30 PM Bug #4062: Web Services and Data Transformation demo throws a StringOutOfBounds
This error is from the web service actor. I'll look into it. Daniel Crawl

05/14/2009

04:58 PM Bug #4013: Make sure duplicate jars are not included in the installer
I wrote a build task to identify all duplicate jar files within the current suite. I identified many jar files that ... Chad Berkley
03:53 PM Bug #4068 (Resolved): File Menu should display 5 most recently used workflows
The 'File' menu in Kepler does not show the most recently opened workflows.
It would be important to have a "Recent ...
Bertram Ludaescher
03:43 PM Bug #4067 (Resolved): Add "about" widget for kepler on the mac
after I changed kepler so it uses the native osx menu bar, there is now an "about kepler" menu item that uses a defau... Chad Berkley
02:15 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
Filter button has been eliminated and table is populated by default, bringing WRM more in line with the mockups. 'Fil... Derik Barseghian
12:23 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
Sorting has been fixed. Derik Barseghian
05:54 PM Bug #4066: Allow legacy LSIDs to be parsed, but not serialized
I've added a kludge to the KeplerLSID class that accepts urn:lsid:<authority>:<namespace>.<object>.<revision>#<anchor... Aaron Aaron

05/13/2009

04:44 PM Bug #4066: Allow legacy LSIDs to be parsed, but not serialized
Example XML snippet was from a kruger TPC workflow that had an ImageJ actor (probably from a while back) in the workf... ben leinfelder
04:43 PM Bug #4066 (Resolved): Allow legacy LSIDs to be parsed, but not serialized
After shifting to a non-IBM implementation of LSIDs, a few workflows were encountered that had actors using dots (.) ... ben leinfelder
04:11 PM Bug #4013: Make sure duplicate jars are not included in the installer
Perhaps better yet, use a checksumming algorithm to check for duplicates. Something like:

find . -name "*.jar" |...
Shaun Walbridge
11:26 AM Bug #4013: Make sure duplicate jars are not included in the installer
This is probably an underestimate of the duplicates because I'll bet that some of the jar files that are in only once... Matt Jones
10:38 AM Bug #4013: Make sure duplicate jars are not included in the installer
Duplicate jar list from Christopher:
bash-3.2$ find . -name "*.jar" -print | awk -F / '{print $NF}' | sort | uniq -c...
Chad Berkley
12:47 PM Bug #4063: Kepler-1.XDev Installer is large
For archival reasons, I think it is very important to release a
source only tar.gz file of Kepler-2.0. The reason is...
Christopher Brooks
10:37 AM Bug #4063: Kepler-1.XDev Installer is large
The duplicate jar problem is in bug 4013. Thanks for getting a list though. I'll copy it over to that bug.
The rea...
Chad Berkley
08:37 AM Bug #4063 (Resolved): Kepler-1.XDev Installer is large
The Kepler-1.XDev installers are very large:
[ ] kepler-1.xDev-osx.jar 12-May-2009 14:32 212M
[ ] kepler-1...
Christopher Brooks
11:59 AM Bug #4060: Copyrights need to be updated to 2009
Updated the copyright.htm file as well as all of the source code that I could find a copyright statement in. Chad Berkley
06:45 PM Bug #4060 (Resolved): Copyrights need to be updated to 2009
The copyrights need to be updated to 2009.
There are some scripts in ptII/adm/copyright.
In particular, ptolemy/c...
Christopher Brooks
11:10 AM Bug #4065 (Resolved): Copy documentation into installer
Make sure the installer includes the documentation from kepler-docs and that the links in the help menu work. Chad Berkley
10:32 AM Bug #4064 (Resolved): remove r installer after installation is complete
delete the file r/module-info/R-2.9.0* after installation of kepler and R is complete to save disc space. Chad Berkley
07:20 PM Bug #4061: Documentation links are not active
The previous build simply knew where to copy these from -- the pdf files needed are in kepler-docs. We should just a... Matt Jones
06:51 PM Bug #4061 (Resolved): Documentation links are not active
In the splash screen, none of the documentation links are active.
Help -> About -> Documentation
Brings up do...
Christopher Brooks
06:54 PM Bug #4062 (Resolved): Web Services and Data Transformation demo throws a StringOutOfBounds
Web Services and Data Transformation demo brings up an exception:
Java.lang.StringIndexOutOfBoundsException: Strin...
Christopher Brooks

05/12/2009

01:54 PM Bug #3893: EML 2 Dataset not working with local data
re-open:
dataFile is not being reloaded when attribute changes.
ben leinfelder
11:02 AM Bug #3893: EML 2 Dataset not working with local data
retargeted for bookkeeping purposes ben leinfelder
11:01 AM Bug #3893: EML 2 Dataset not working with local data
using absolute URL for the local data file even when in the same directory ben leinfelder
01:16 PM Bug #4008: EML 2 Dataset throws errors when accessing public data from mixed public/private datasets
Well, it's more than just annoying error messages. The trunk workflow doesn't work at all for me. On XP, one actor ... Oliver Soong
11:04 AM Bug #3890: EML 2 Dataset has trouble with a certain data table
works for me now. can reopen if turns out the fix was not fully adequate. ben leinfelder
10:26 AM Bug #3890: EML 2 Dataset has trouble with a certain data table
retargeting to 2.0 - want to have this resolved by then (configuration) ben leinfelder
05:21 PM Bug #3890: EML 2 Dataset has trouble with a certain data table
Found that "tab delimited" datatables from Morpho are using "#x09" as the character. This does not work with the HSQL... ben leinfelder
11:02 AM Bug #3892: EML 2 Dataset file path confusion
using absolute URL now ben leinfelder

05/11/2009

01:52 PM Bug #3991: large workflow errors
this needs to be fixed if it remains a problem - retargeting to 2.0 ben leinfelder
01:51 PM Bug #3991: large workflow errors
I cleared the cache and tried opening the workflows (first the parts, then the whole).
It opens - sure there are tons...
ben leinfelder
01:37 PM Bug #3991: large workflow errors
yikes! that's a lot of memory.
rain.xml seems to open (eventually) for me.
Looking into the "Unable to parse the Met...
ben leinfelder
01:08 PM Bug #3691: JButton labels truncated on macOSX
Crawl reports the Refresh button on the Data sources is also truncated. Derik Barseghian
01:00 PM Bug #4036: WRM - connect to configurable provenance store
re: comment#1, I just verified it works on linux too. Derik Barseghian
12:47 PM Bug #4036: WRM - connect to configurable provenance store
Made a little progress - on the mac (and probably works on linux) the WRM now uses the top level recorder settings if... Derik Barseghian
12:51 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
The two bugs related to search cells getting stuck in edit mode have been fixed.
A gui bug with row highlighting has...
Derik Barseghian
10:44 AM Bug #4008: EML 2 Dataset throws errors when accessing public data from mixed public/private datasets
I recognize that the error messages are annoying, but I'm not sure what the alternative is.
If you are authenticated ...
ben leinfelder

05/08/2009

09:22 AM Bug #4057: UserInteractiveShell message
I think you need to use an InitializableDelay.
UserInteractiveShell is based on InteractiveShell, for a sample
use, ...
Christopher Brooks
07:46 AM Bug #4057 (New): UserInteractiveShell message
The message in the UserInteractiveShell doesn't make sense, and gives a "null" at the beginning.
Here is the curre...
Chris Weed

05/06/2009

06:00 PM Bug #4056 (New): create developer documentation for svn configuration.
When svn checks in files, it checks them in using a binary mode.
This is a problem when files are checked in using w...
Christopher Brooks

05/05/2009

04:40 PM Bug #3949: Get the installer working with the new build system
Added functionality to the installer build task that allows it to pull in custom packs from modules. To use this, pu... Chad Berkley
01:33 PM Bug #4039: matlab actor always stops matlab process in wrapup
In order for the matlab process to persist after model execution, an engine cannot be opened in an actor's thread.
h...
Daniel Crawl
10:45 AM Bug #4010: RExpression2 - tracking for backwards compatibility
ReadTable.xml
there's a issue with how I'm setting up the graphics device. it's purely my R code, since the followin...
ben leinfelder
09:50 AM Bug #3985: Types resolved to unacceptable types
It seems like the error is thrown before R even runs, in which case it probably wouldn't be a problem with R itself. ... Oliver Soong
08:36 AM Bug #4022: undesired file:\ prefix added by FileParameter
I have this problem using version 1.0.0 and on both XP and Vista. At first after you said you can't reproduce it I tr... Tommy Tommy
07:54 PM Bug #4055 (Resolved): leftover cachedata files
It seems that after data has been searched there are some left over data files in the .kepler/cache/cachedata directo... Aaron Aaron
07:12 PM Bug #4049: Import actor that already exists appends strange numbering scheme
I've checked in a fix, but am leaving this open and changing to a feature request -- see if there's a better way to g... Derik Barseghian
05:46 PM Bug #4054: DataTurbine tree actor icon should be a can
fixed. Derik Barseghian
05:30 PM Bug #4054 (Resolved): DataTurbine tree actor icon should be a can
The small icon in the actor tree representing the DataTurbine actor should be a can, not the generic square. Derik Barseghian
05:19 PM Bug #4047: Remove Component doesn't work
I've fixed this problem.
However the behavior should be improved, and so I'm changing this bug to a request for enha...
Derik Barseghian

05/04/2009

04:39 PM Bug #3985: Types resolved to unacceptable types
I downloaded this from
http://www.nceas.ucsb.edu/~soong/kepler/Unacceptable%20Types%20Problem.xml
and am uploading it...
Christopher Brooks
04:21 PM Bug #4022: undesired file:\ prefix added by FileParameter
I can't reproduce this, the attached demo works as it should.
Is there a test case?
BTW - URL.toString() changed bet...
Christopher Brooks
04:15 PM Bug #4049: Import actor that already exists appends strange numbering scheme
I should've been more clear, this is using the Kepler File => Import Archive (KAR) menu item and then looking at the ... Derik Barseghian
04:07 PM Bug #4049: Import actor that already exists appends strange numbering scheme
I'm not sure how to reproduce this.
Doing Tools -> Instantiate Component over and over again creates
Ramp
Ramp2
Ramp3...
Christopher Brooks
03:47 PM Bug #4053: deleting open composite actor may delete model
This is reproducible in Ptolemy.
The issue is that if a model has a composite and the composite is open,
what happens...
Christopher Brooks
03:01 PM Bug #4053 (Resolved): deleting open composite actor may delete model
Under certain circumstances, deleting an open composite actor may result in deleting the remainder of the model. Here... Daniel Crawl
03:40 PM Bug #4050: dragging actors can leave artifacts until you stop dragging
The trail of visual artifacts issue was fixed by modifying KeplerGraphTableau to
extend Tableau and then modifying Wo...
Christopher Brooks
12:41 PM Bug #4050: dragging actors can leave artifacts until you stop dragging
I can replicate this with Display and XYPlotter actors, they both leave vertical
green lines when dragged to the left...
Christopher Brooks
03:37 PM Bug #2321: merge exp files into ptolemy CVS
I'm closing this.
The highlight issue was fixed by modifying KeplerGraphTableau to extend Tableau
and then modifying ...
Christopher Brooks
10:06 AM Bug #2321: merge exp files into ptolemy CVS
There are selection and highlighting issues that should be addressed before
this bug is closed.
Christopher Brooks
03:23 PM Bug #4017: Make sure module manager and installer work together wrt the classpath
The module manager and installer both use the same bootstrapper to build the classpath. All build classes that launc... Chad Berkley
03:14 PM Bug #3809: jni actors do not work
JNI actors now work with both the installed and the ant-executed versions of kepler. The java.library.path is also a... Chad Berkley
03:09 PM Bug #4010: RExpression2 - tracking for backwards compatibility
FIXED:
RExpression_Matrix_IO_Test.xml
-matrices now handled like R wants them to be (column-major)
ben leinfelder
02:50 PM Bug #4052 (New): Should be able to store native libraries in a kar file
A kar file should be able to contain native libraries needed for a given actor. These libraries should be loaded at ... Chad Berkley
02:48 PM Bug #3074: Code library installation issues
libraries can now be stored in the lib directory of any module. This should allow individual modules to be able to l... Chad Berkley
10:34 AM Bug #3074: Code library installation issues
Kepler no longer relies upon installation of dlls into system32. the path variable is changed at runtime and the dll... Chad Berkley
01:20 PM Bug #4051 (Resolved): R - include R distribution in separate module
Instead of including the R dist in the core Kepler module, we want to have it in a separate module so that upgrades t... ben leinfelder
12:54 PM Bug #4047: Remove Component doesn't work
When you Remove Component, this error appears: "Error in getting actor in ShowDocumentationAction", and the actor sta... Derik Barseghian
12:42 PM Bug #3593: exporting an actor to kar does not save portparameters that have been defined
Closing, seems fine. Derik Barseghian
12:02 PM Bug #3593: exporting an actor to kar does not save portparameters that have been defined
This dates back to kommineni, r12215: "addAttribute method has been changed to eliminate duplicate entries in moml fi... Derik Barseghian
11:34 AM Bug #4029: missing dependency for tools.jar in windows
Fixed in
https://kepler-project.org/developers/reference/kepler-and-eclipse
https://kepler-project.org/developers/te...
Christopher Brooks
11:29 AM Bug #4028: Nondeterministic Merge Actor doesn't generate output
Solved the bug by reverting the change made in version 53061 (which was committed with message "Eclipse: removed unus... Bert Rodiers
11:25 AM Bug #4028: Nondeterministic Merge Actor doesn't generate output
53042 version of NondeterministicMerge works for me. Thanks for your work. jianwu jianwu
11:14 AM Bug #4028: Nondeterministic Merge Actor doesn't generate output
Does your model work if you revert the version of NondeterministicMerge back to 53042? In the next modification in th... Bert Rodiers
11:10 AM Bug #3999: WRP - create event-driven states for Kepler
TODO: design document. ben leinfelder
10:52 AM Bug #3999: WRP - create event-driven states for Kepler
Added Morpho-based "event-state" module to be use for communicating between tabs/views.
Likely need modifications to ...
ben leinfelder
10:56 AM Bug #3931: Get the R actor working with JNI
The more I/We work with the RNI implementation of this actor, I believe we'll need to seriously consider using some o... ben leinfelder
10:32 AM Bug #3097: incorrect classpath in generated ptexecute.sh and momlexecute.sh
Execution now pauses. Will break "- MoMLSimpleApplication does not filter Display actor or any GUI Kepler actors." i... Chad Berkley

05/02/2009

06:01 PM Bug #3593: exporting an actor to kar does not save portparameters that have been defined
Checked in a fix.
We were intentionally skipping adding PortParameters when exporting to an actor kar. Does anyone ...
Derik Barseghian

05/01/2009

04:03 PM Bug #4050 (Resolved): dragging actors can leave artifacts until you stop dragging
Dragging some actors leaves visual artifacts until you stop dragging. The color of the artifacts seems to match the a... Derik Barseghian
03:37 PM Bug #4049 (New): Import actor that already exists appends strange numbering scheme
When I import an actor that already exists, saying Yes to use the next available id, the new actor appends a numberin... Derik Barseghian
03:30 PM Bug #3242: dlls should not go in c:/Windows/System32
Fixed this by allowing the bootstrapper to modify the PATH env variable at runtime. While the java.library.path vari... Chad Berkley
02:09 PM Bug #3242: dlls should not go in c:/Windows/System32
After re-reading the jguru thread that christopher posted, I added common/lib to the PATH in windows and now there is... Chad Berkley
02:00 PM Bug #3242: dlls should not go in c:/Windows/System32
On windows XP, if the dlls are not in the System32 directory, I get the following error:
ptolemy.kernel.util.Illegal...
Chad Berkley
03:21 PM Bug #3593: exporting an actor to kar does not save portparameters that have been defined
I note that when I set a portparameter in an actor within a composite, and then export the composite, the value is sa... Derik Barseghian
02:51 PM Bug #2321: merge exp files into ptolemy CVS

Hi Chad, I am currently under the impression that it would be a substantial effort to open multiple actor canvases i...
Aaron Aaron
02:34 PM Bug #2321: merge exp files into ptolemy CVS
Enabling multiple tabs to be opened in one window is a feature we already identified and mocked up as part of the rep... Matt Jones
01:08 PM Bug #2321: merge exp files into ptolemy CVS
Just noticed something weird about this. If you draw a rubber-band box around the actors, the selection is shown, bu... Chad Berkley
02:34 PM Bug #4048 (New): Get error message when too much code in single R actor
I have an R actor that has quite a few lines of code. It seems that when I have more than 3,224 (I think) characters ... Tommy Tommy
01:42 PM Bug #4047 (Resolved): Remove Component doesn't work
Right click an actor in library, Remove Component doesn't remove it from the tree. Derik Barseghian
01:05 PM Bug #4046 (New): ComadTest should report more details when detecting an error
The ComadTest actor is used to create automated tests of COMAD features. Because it is often useful to include sever... Timothy McPhillips
06:17 PM Bug #3691: JButton labels truncated on macOSX
Good point, I haven't seen any others so far. If anyone sees any other button label truncation please report here. Derik Barseghian
05:53 PM Bug #3691: JButton labels truncated on macOSX
Looks great to me, Derik.
By the way, is this the only place where button labels were truncated, or are there othe...
Matt Jones
05:51 PM Bug #3691: JButton labels truncated on macOSX
I'll leave this open for now until others have had a chance to see the new ui and possibly object. Derik Barseghian
05:48 PM Bug #3691: JButton labels truncated on macOSX
I've checked in a fix; I made the buttons 11px bigger. I've removed some other spacing trying to minimize the widenin... Derik Barseghian
05:05 PM Bug #2569: Popup (context) menu do not appear for relations and connections
Fixed by editing
common/configs/ptolemy/configs/kepler/uiContextMenuMappings_en_US.properties
The way to fix these i...
Christopher Brooks

04/30/2009

04:54 PM Bug #3932: Configure Actor actor context menu item missing
Fixed by editing
common/configs/ptolemy/configs/kepler/uiContextMenuMappings_en_US.properties
Added comment about deb...
Christopher Brooks
10:28 AM Bug #4041 (New): synchronization in matlab actor
The matlab actor starts a new matlab process in preinitialize and closes it in wrapup. Each instance of the actor in ... Daniel Crawl
10:05 AM Bug #2321: merge exp files into ptolemy CVS
I've made changes and removed util/src/ptolemy.
One remaining issue is ActorGraphFrame, see the discussion below.
I'v...
Christopher Brooks
10:04 AM Bug #4040 (New): make a new module called globus to host globus actors and needed packages.
we have duplicate globus libs in current build system: common\etc\cog\, util\lib\jar\globus\lib, util\lib\jar\globus\... jianwu jianwu
09:58 AM Bug #2363: Move Actions out of BasicGraphController
I'm closing this, I created
util/src/org/kepler/gui/SemanticSearchDialogAction.java
util/src/org/kepler/gui/WorkflowT...
Christopher Brooks
09:54 AM Bug #4039 (New): matlab actor always stops matlab process in wrapup
The matlab actor always stops the matlab process when model execution ends. It would be nice if the actor could (opti... Daniel Crawl
09:33 AM Bug #4038: The first time ant change-to is run, it prints a stack trace
I'm also seeing this behavior. It looks like it's trying to read the modules.txt file before it gets checked out. Chad Berkley
09:09 AM Bug #4038 (Resolved): The first time ant change-to is run, it prints a stack trace
The first time I run ant change-to under Windows, I get:
change-to:
[change-to] java.io.FileNotFoundException: c:...
Christopher Brooks
09:15 AM Bug #3988: Rectangle shifts position on resize
I'm closing this, my solution was to modify the configuration
so that new RectangleAttributes are created with center...
Christopher Brooks
06:24 PM Bug #4034: "Invalid memory access" when running workflow from the command line
re-assigning to David - maybe he can shed some light on what might be happening.
(Unfortunately it seems like it migh...
ben leinfelder
06:08 PM Bug #4034: "Invalid memory access" when running workflow from the command line
This same error occurs when we use the "run-workflow" ant target:
$> ant run-workflow -Dworkflow=../common/demos/gett...
ben leinfelder
06:00 PM Bug #4034: "Invalid memory access" when running workflow from the command line
removing the call to the EcogridService does not fix the invalid memory error. This doesn't have to do with that serv... ben leinfelder
05:16 PM Bug #3332: RExpression_Matrix_IO_Test workflow gives an error
Yep, I no longer see this bug on either Mac or Linux, closing. Derik Barseghian
05:09 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
You can rearrange columns now and they'll stay in sync with the search header.
Column specific default text now works...
Derik Barseghian

04/29/2009

04:04 PM Bug #4034: "Invalid memory access" when running workflow from the command line
reverting to an older org.ecoinformatics.ecogrid.RegistryService-stub.jar version did not work (still had the same er... ben leinfelder
02:52 PM Bug #4034 (Resolved): "Invalid memory access" when running workflow from the command line
When running even very simple workflows from the command line, Kepler fails with the following output. For some reas... Chad Berkley
03:18 PM Bug #4037 (Resolved): WRM - connect to Kepler-wide configurable provenance store
This is Phase 2 for the WRM interface:
-Add a Kepler-wide provenance configuration. The intent is that the WRM inter...
ben leinfelder
03:11 PM Bug #4036 (Resolved): WRM - connect to configurable provenance store
Currently the WRM viewer connects to the default provenance store specified in a .properties bundle in the WRM module... ben leinfelder
03:06 PM Bug #4035: MoMLSimpleApplication does not filter Display actor or any GUI Kepler actors.
See bug 3097 for the provenance of this bug. Chad Berkley
03:05 PM Bug #4035 (New): MoMLSimpleApplication does not filter Display actor or any GUI Kepler actors.
When you run a -nogui kepler run, MoMLSimpleApplication should have the ability to filter some of the gui elements in... Chad Berkley
03:03 PM Bug #3097: incorrect classpath in generated ptexecute.sh and momlexecute.sh
Update:
>2. (from comment #6) pause before exiting when running with '-gui'.
I'm looking into this now. I'm not ex...
Chad Berkley
02:58 PM Bug #3634: Define the interface between Provenance and Reporting
we have this look up implemented now - closing ben leinfelder
02:56 PM Bug #3949: Get the installer working with the new build system
Since R is now in its own module, the installer not only has to have the option to install R, but also to install the... Chad Berkley
02:53 PM Bug #3990: Include "workflow-run-manager" module in "wrp" suite
closing this - now running with the real WRM in the "wrp" module ben leinfelder
01:58 PM Bug #3990: Include "workflow-run-manager" module in "wrp" suite
I've removed the [placeholder] WRM screen from reporting's config and module.
I've added the WRM module to the wrp su...
ben leinfelder
02:27 AM Bug #4033: Can't compile, MakeKars not found
Fixed. David Welker
07:22 PM Bug #4033 (Resolved): Can't compile, MakeKars not found
I can't get the head to build, and the compiler is complaining it can't find MakeKars. Revision 17442 will compile, ... Oliver Soong
08:48 PM Bug #2321: merge exp files into ptolemy CVS
Open Actor and Convert to Class are in the actor context menu for me
in a clean checkout, after
mkdir kepler
cd kepl...
Christopher Brooks

04/28/2009

12:51 PM Bug #3998: Report Viewer - render Report Instance on???Event
I've got the "event-state" module in Kepler now. It's based on the Morpho event management classes.
The "test" button...
ben leinfelder
12:01 PM Bug #3986: RExpression confounding R working directory and .kepler folder
we might consider removing this parameter since it's not really useful and will loose any utility it provides once we... ben leinfelder
11:56 AM Bug #3986: RExpression confounding R working directory and .kepler folder
I was under the impression the R working directory (Rwd) was a parameter to set the working directory of the R actor,... Oliver Soong
11:58 AM Bug #4026: Bootstrapper will not run kepler in a directory with spaces
This was actually a problem with the lib path, not the classpath. The classpath is handled internally by the Java an... Chad Berkley
 

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