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From 05/11/2009 to 06/09/2009

06/10/2009

06:32 PM Bug #4144 (Resolved): Workflow Run Manager - moving columns / new windows bug
WRM - if you move a column, then open a new kepler window, there are problems with column and headers being out of or... Derik Barseghian

06/09/2009

04:22 PM Bug #4143: "change failed" error while copy/paste-ing an ImageJ actor
Copy/paste the ImageJ actor creates an error. Oliver Soong
04:21 PM Bug #4143 (Resolved): "change failed" error while copy/paste-ing an ImageJ actor
This seems to affect only Windows systems and has to do with saved values in the fileOrURL parameter in the ImageJ ac... Oliver Soong
03:14 PM Bug #2261: DIALOGS: Implement New "Advanced Search for Data" Dialog
I propose to take over this old bug -- REAP requires an Advanced Search dialog that allows a user to select a region ... Derik Barseghian
01:30 PM Bug #4141: EML 2 Dataset breaks when data table has 2 columns with the same name
Even with "As Field" and "As Column Vector" we only nd up with a single port for the Stem_pattern column (even though... ben leinfelder
12:26 PM Bug #4141: EML 2 Dataset breaks when data table has 2 columns with the same name
This has already been raised for the Kruger datasets. Isn't there already code to append actor names with a number? ... Oliver Soong
12:15 PM Bug #4141: EML 2 Dataset breaks when data table has 2 columns with the same name
This makes some sense: EML allows the names to be the same. A RecordToken cannot have two records with the same name.... ben leinfelder
11:56 AM Bug #4141 (Resolved): EML 2 Dataset breaks when data table has 2 columns with the same name
I am observing this problem with WoodyVCAtreesincirclea.txt in judithk.769.20, although this dataset requires authent... Oliver Soong
12:32 PM Bug #4132: Workflow Run Manager - Open in New Window is just opening the workflow, not the ROML or report
We can open the ROML - that'll make sense. Not sure how we would want to "open the report" - right now that UI is bas... ben leinfelder
12:10 PM Bug #4142: EML 2 Dataset caches restricted datasets, allows access across sessions
this is known behavior. as you say there is a certain "oh, really?" factor to it. I've marked to revisit at a "LATER"... ben leinfelder
12:05 PM Bug #4142 (Resolved): EML 2 Dataset caches restricted datasets, allows access across sessions
I authenticated to search and add an EML 2 Dataset actor for a restricted data table. If I save the workflow, close ... Oliver Soong
11:59 AM Bug #4119: Report Model - use LSID to link layout to workflow
will continue to use the WorkflowManager (for sanparks).
Using LSID for the linkage - that's a win!
ben leinfelder
11:09 AM Bug #3238: Refactor NMI build
I've created a new build task 'nmi' to build an NMI configuration for any given suite. It works like this:
You run ...
Chad Berkley
11:08 AM Bug #4140 (Resolved): Workflow Run Manager - delete runs functionality needs to be written
WRM - Delete run(s) functionality needs to be written. Argument: list of lsids Derik Barseghian
10:07 AM Bug #4022: undesired file:\ prefix added by FileParameter
A Ptolemy model that uses a FileParameter that works for me.
I can't reproduce this bug in Kepler, in part because I...
Christopher Brooks
06:30 PM Bug #4022: undesired file:\ prefix added by FileParameter
In Windows, it does prepend a "file:/" before the "C:/", which is slightly different from the OS X and linux behavior... Oliver Soong
06:05 PM Bug #4022: undesired file:\ prefix added by FileParameter
I can confirm this with 1.x dev under OS X and linux. It occurs when the file being selected by the chooser is both ... Oliver Soong
07:36 PM Bug #4139: port names are displayed twice
As a clarification, this only seems to occur in the top-level of the workflow in bug 4129 (http://bugzilla.ecoinforma... Oliver Soong
07:20 PM Bug #4139 (In Progress): port names are displayed twice
When I choose to show port names, they are displayed once next to the port as expected and once in the upper left cor... Oliver Soong

06/08/2009

01:50 PM Bug #4129: "unable to parse the metadata: null" with dataset judithk.306.21
i said i'd look at this... ben leinfelder
01:10 PM Bug #4138 (New): Workflow Run Manager - search cell edit focus isn't lost appropriately
WRM - For the most part, if you click on something else in Kepler while editing a WRM search cell, the cell inappropr... Derik Barseghian
01:06 PM Bug #4137 (New): Workflow Run Manager - resizing width of column while in edit mode of search cell does not resize edit field
WRM - resizing width of column while in edit mode of search cell does not resize edit field. It should, it looks stra... Derik Barseghian
01:02 PM Bug #4136 (Resolved): Workflow Run Manager - date and duration search should allow single operator-less arguments
WRM - the user should be able to enter a single date or duration without an operator (operators are currently: >, <).... Derik Barseghian
12:56 PM Bug #4135 (Resolved): Workflow Run Manager - default sorting (by date) should be applied
WRM - by default the runs have no sorting applied.
It would be more intuitive to sort by date by default (probably ...
Derik Barseghian
12:54 PM Bug #4134 (Resolved): Workflow Run Manager - double clicking on search cell shouldn't sort column
WRM - double clicking on a search cell column header also causes a sort. This is pretty annoying. Derik Barseghian
12:47 PM Bug #4133 (Resolved): Workflow Run Manager - column widths should be size appropriately
WRM column widths should be sized more appropriately by default, e.g. giving the date and duration columns enough roo... Derik Barseghian
12:44 PM Bug #4132 (New): Workflow Run Manager - Open in New Window is just opening the workflow, not the ROML or report
Open in New Window should open not just the workflow, but the roml and report (anything else?). Derik Barseghian
12:43 PM Bug #4131 (New): Workflow Run Manager - Open in New Window allows opening same wf multiple times
You can currently Open in New Window the same workflow from the WRM multiple times (i.e. into new Kepler windows). Th... Derik Barseghian
12:39 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
Change referred to in #20 have been checked in.
This bug's become huge, going to create separate bugs that block this...
Derik Barseghian
11:39 AM Bug #3635: Create ReportItem Type Hierarchy
I think it will be very useful to make StaticReportItem subclasses - if only to make rendering them in the UI more st... ben leinfelder
11:34 AM Bug #3998: Report Viewer - render Report Instance on???Event
when the view changes, an event is fired and the viewer is now listening/responding that that event. ben leinfelder
11:33 AM Bug #3647: Create Report Assembler
the assembler is in place.
it's up to the various Item subclasses to get their values when needed.
ben leinfelder
11:29 AM Bug #4020: WRP - create WorkflowRun object to encapsulate provenance/report instances
We're now using a WorkflowRun object (subclass of NamedObj) to store the run provenance metadata. This moml snippet i... ben leinfelder
11:26 AM Bug #4001: WRP - Save/Open KARs containing MOMLs and ROMLs
created ReportLayoutKAREntryHandler for writing ROML to the KAR when it's associated workflow is saved as a KAR.
simi...
ben leinfelder

06/06/2009

05:00 PM Bug #4129: "unable to parse the metadata: null" with dataset judithk.306.21
Referenced workflow, zipped Oliver Soong

06/05/2009

04:59 PM Bug #4129 (Resolved): "unable to parse the metadata: null" with dataset judithk.306.21
This error occurs on XP but does not occur on linux. It only occurs if the dataset has not been previously cached. ... Oliver Soong
02:33 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
Locally I've created a WorkflowRunManager class and associated Event and EventListener classes. With these I have the... Derik Barseghian

06/04/2009

04:50 PM Bug #4086: Port-Parameters half-work with composite actors
PortParameters work with opaque composite actors (composite actors
that have directors), but not transparent composit...
Christopher Brooks

06/03/2009

03:39 PM Bug #3637: Report Design Features, Stage 1
The following design features have been completed:
Ability to add:
Titles
Subtitles
Sections
Legends (will be accommo...
debi staggs
03:37 PM Bug #3734: Some demos no longer work after new build/repos
moved the smaller test garp workflows into a test-workflow subdir of ENM. This separates out the main ENM workflows ... Chad Berkley
02:49 PM Bug #3734: Some demos no longer work after new build/repos
Checked and fixed all workflows in outreach/resources/demos. Some in the demos/ENM directory do not work, but failur... Chad Berkley
02:24 PM Bug #3734: Some demos no longer work after new build/repos
checked and fixed all of the demos in outreach/resources/demos/getting-started Chad Berkley
03:31 PM Bug #3644: Create report layout controller
We did not end up creating a formal 'controller' for the layout, but we did create a method for rendering report layo... debi staggs
03:29 PM Bug #4128 (Resolved): Improve reporting static item icons
Make static item icons that are appealing and visually consistent, current icons were just initial 'placeholders' for... debi staggs
12:18 PM Bug #3668: Define contents of "Publication Ready Archive"
In a recent meeting with Matt and Ben, we discussed a proposal for a redefinition of KAR that would be able to contai... Derik Barseghian
08:29 AM Bug #4126 (Resolved): Allow user CLASSPATH to be loaded in Kepler
I have a jython actor that uses a java class I have in a jar file. Kepler fails when loading that actor via a kar fil... Enrique Garcia

06/02/2009

04:44 PM Bug #4125: ReportTest does not compile
I had added some additional classes to this test, but decided not to use them for now. This is what was causing the ... debi staggs
12:21 PM Bug #4125 (Resolved): ReportTest does not compile
I get the following when I try to run the reporting module:
[compile] Compiling 60 source files to /Users/sean/Dev...
Sean Riddle
03:47 PM Bug #4064: remove r installer after installation is complete
decided against doing this. There is no good place to do it in the install.xml file since the R installer is already... Chad Berkley
03:31 PM Bug #3949: Get the installer working with the new build system
Re-opening. forgot so many bugs blocked this one. Chad Berkley
03:29 PM Bug #3949: Get the installer working with the new build system
The installer creation task has been working well for while. Closing this bug. If any other issues pop up, new bugs... Chad Berkley
03:26 PM Bug #3238: Refactor NMI build
JUnit tests now work but they still run in the 'build' stage instead of the 'test' stage. I don't think this is a bi... Chad Berkley
03:22 PM Bug #3238: Refactor NMI build
In the process of getting the NMI build working for the kepler suite. I'm also getting it to build the installers an... Chad Berkley
03:21 PM Bug #4111: move test data to a more appropriate locations
removed all references to testdata in the demos and replaced it with the new path. closing this bug. Chad Berkley
03:08 PM Bug #4105: Make build system automatically build OS dependent modules
This now works. Adding an osextensions.txt file with the class names and java OS identifier of the OS they are suppo... Chad Berkley
12:31 PM Bug #4123: Image reader can't read URL
Fixed!
ImageReader is a very old actor, written in 2001.
The fileOrURL parameter was changed to a FileParameter in 20...
Christopher Brooks
10:10 AM Bug #4123: Image reader can't read URL
I meant "ImageReader" instead of "FileReader" in my comment Chris Weed
10:08 AM Bug #4123: Image reader can't read URL
I just noticed URLToImage is similar to what I want. I guess my confusion was that the parameter in FileReader is fil... Chris Weed
10:01 AM Bug #4123 (Resolved): Image reader can't read URL
In ptolemy.actor.lib.image.ImageReader
replace
_image = new ImageIcon(_fileRoot).getImage();
with:
try {
_im...
Chris Weed
11:56 AM Bug #4124: ant package fails
Confirmed fixed. David Welker
11:33 AM Bug #4124: ant package fails
This has probably been fixed. I am going to test and then close the bug. David Welker
11:23 AM Bug #4124 (Resolved): ant package fails
BUILD FAILED
.../build-area/build.xml:75: Warning: Could not find file .../build-area/ant-tasks/target/kepler-tasks....
Daniel Crawl
10:11 AM Bug #4121: Queryable - use LSID to look up workflows
I've added getLastExecutionForWorkflow(KeplerLSID) and getEntityId(String, LSID).
Feel free to re-open this bug if y...
Daniel Crawl
09:58 AM Bug #4122 (Resolved): File -> Save As does not assign new LSID
After saving a workflow to a different file name, both workflows have the same LSID. Daniel Crawl
07:11 PM Bug #3898: update .kepler instead of removing it between versions
Chad, David, and I had a discussion today about how to handle the .kepler directory for the 2.0 release. The conclus... Aaron Aaron
05:26 PM Bug #4107: Report Designer - Deserialize a ROML and display it back in the Report Layout Designer GUI
We can now read in a ROML and display it in the GUI. debi staggs

06/01/2009

11:24 AM Bug #4120: Bug in OpenDBConnector actor
I've updated OpenDBConnection to use the new string. Daniel Crawl
01:03 AM Bug #4120 (Resolved): Bug in OpenDBConnector actor
It also appears that the OpenDBConnector needs to be updated too. The previous version of the driver class required ... Jamie Vleeshouwer
10:54 AM Bug #4121 (Resolved): Queryable - use LSID to look up workflows
Now that we are using LSIDs to identify workflows, can the Queryable implementations also use that? Currently they pe... ben leinfelder
10:51 AM Bug #4119: Report Model - use LSID to link layout to workflow
making progress using ObjectManager to keep track of workflows and layouts. still using Workflow and WorkflowManager ... ben leinfelder

05/30/2009

03:28 PM Bug #4119 (Resolved): Report Model - use LSID to link layout to workflow
Now that he have a Kar Entry Handler for ROML, we need to use the cache+lsid for storing and retrieving that layout f... ben leinfelder

05/29/2009

09:42 AM Bug #4118: Web Service Actor stored in Library
Are you using Kepler from SVN? I think I've already fixed this bug in WebService.
(http://bugzilla.ecoinformatics.org...
Daniel Crawl
09:28 AM Bug #4118: Web Service Actor stored in Library
This line should be uncommented to make this work:
> //if(_urlStr.length()>0)
Chris Weed
09:26 AM Bug #4118 (Resolved): Web Service Actor stored in Library
After setting the wsdl and service name in org.sdm.spa.WebService and org.sdm.spa.WSWithComplexTypes, I store them ba... Chris Weed
06:10 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
How about:
ant update -Drev=head
Updates everything, including ptolemy, to the head?
David Welker
05:55 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
Thanks for adding the message, that will help.
I think if we had "ant update-head", then I'd be happy. The other co...
Christopher Brooks
05:47 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
Oh, I should add that per your suggestion, I have added an informative message when you are updating ptolemy:
Updati...
David Welker
05:44 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
Hi Christopher,
Good comments.
Actually, the command ant use-ptolemy-head and ant use-stable-ptolemy have been both...
David Welker
05:24 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
Actually, maybe "ant update-head" could replace "ant use-ptolemy-head"?
I'll never remember "ant use-ptolemy-head". ...
Christopher Brooks
05:04 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
So every time I run "ant update", I need to also run "ant use-ptolemy-head".
The README.txt and web pages should be u...
Christopher Brooks

05/28/2009

12:31 PM Bug #4111: move test data to a more appropriate locations
I changed kepler so that it will try to automatically open to the outreach/resources/demos directory. If it does not... Chad Berkley
12:28 PM Bug #4111: move test data to a more appropriate locations
To add the outreach module (or any module for that matter) to your suite temporarily, you can use the -Dunder switch ... Chad Berkley
12:23 PM Bug #4111: move test data to a more appropriate locations
I moved the testdata and the demos to the outreach module. I'm looking into ways to add the ability to the build sys... Chad Berkley
05:30 PM Bug #4113 (New): Kepler changes property position in XML but keeps values
This doesn't affect the operation of Kepler, but it makes it a major pain to diff workflows and causes large portions... Oliver Soong

05/27/2009

04:13 PM Bug #4112 (New): make kepler use OSX dialog boxes
Add configuration to the mac extensions to make kepler use the OSX file open/save dialog boxes instead of the default... Chad Berkley
02:47 PM Bug #4111 (Resolved): move test data to a more appropriate locations
Currently, there is ~54 MB of test data in common/lib/testdata. This could be moved to a new module that would be op... Chad Berkley
02:25 PM Bug #4105: Make build system automatically build OS dependent modules
The OS is just a special case of checking for a particular feature
such as a third party library. The build system s...
Christopher Brooks
02:23 PM Bug #4104: Need resource manager to handle objects in the resources directories
Please be sure to review how the Java I18N stuff works.
See
http://java.sun.com/developer/technicalArticles/Intl/Res...
Christopher Brooks
11:11 AM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
Ok, good news that I can build against the ptII head.
The word "update" in "ant update" means something specific, wh...
Christopher Brooks
11:10 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
Hi Christopher,
That was my bad. I forgot to include the names of the new commands in my comment closing the issue.
...
David Welker
06:42 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
I'm confused.
How do I build from the Ptolemy head?
It seem like "ant update" should actually update the tree to t...
Christopher Brooks

05/26/2009

03:49 PM Bug #4093: allow kepler to use OS specific UI elements
fixed. osx kepler now has a new icon set that fit the standard osx icon sizes. please open new bugs for any new Mac ... Chad Berkley
10:31 AM Bug #4093: allow kepler to use OS specific UI elements
fixed the about box. fixed apple-q. The icon shown is now the java icon. Will try to get the kepler icon to work. Chad Berkley
03:47 PM Bug #4067: Add "about" widget for kepler on the mac
Fixed. The mac version of kepler now has an about box, it correctly exits when using apple-q and it has a new icon s... Chad Berkley
03:44 PM Bug #4109: File Reader error message incorrect
fixed it. update ptolemy to see the change. Chad Berkley
02:51 PM Bug #4109 (Resolved): File Reader error message incorrect
The "File Reader" actor (ptolemy.actor.lib.io.FileReader) prints a message
"Failed to write '" + fileOrURL + "'"
...
Chris Weed
12:53 PM Bug #4104: Need resource manager to handle objects in the resources directories
Interesting ideas!
I want to point out a couple of things. First of all, we already have most of this functionality....
David Welker
10:53 AM Bug #4090: You should be able to specify a particular revision number or date with ant update.
As of now, you may specify a revision number with the ant update command. For more recent revisions, specifying a rev... David Welker
07:22 AM Bug #4090: You should be able to specify a particular revision number or date with ant update.
It would be very useful to be able to specify the revision as a date
or a revision number. Checking out by date migh...
Christopher Brooks
10:49 AM Bug #4108 (In Progress): Do more extenstive testing before designating a revision of Ptolemy as stable
Right now, before a revision of Ptolemy is considered "stable" all it must do is be able to compile and the trunk of ... David Welker
10:46 AM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
I agree with you that the word "stable" is better than "blessed" and that is the the word used in one of several new ... David Welker
07:40 AM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
We should use the term "stable" to refer to revisions of Ptolemy and Kepler
that are likely to build for users. A tr...
Christopher Brooks
10:26 AM Bug #4107 (Resolved): Report Designer - Deserialize a ROML and display it back in the Report Layout Designer GUI
We need to be able to deserialize a ROML and display it in the Layout Designer GUI. debi staggs

05/22/2009

01:25 PM Bug #4104: Need resource manager to handle objects in the resources directories
In general I think this is a good idea. But, I could also envision having a number of general search paths for resou... Matt Jones
12:20 PM Bug #4104 (New): Need resource manager to handle objects in the resources directories
This class should have static methods for accessing items in the modules' resources directory. This would allow reso... Chad Berkley
12:25 PM Bug #4105 (Resolved): Make build system automatically build OS dependent modules
There should be a way to tell the build system to automatically build (or not build) modules that are OS dependent so... Chad Berkley
10:24 AM Bug #3764: Kepler needs to support EML 2.1.0
There's no way to add EML 2.1.0 support to Kepler 1.0.0.
We will have a "release" of some sort for the TPC training i...
ben leinfelder

05/21/2009

04:37 PM Bug #4103 (Resolved): Add the capability of creating SECTIONS in the report.
Give the user the ability to group things together in sections in a report. A section should also provide an (option... debi staggs
04:34 PM Bug #4102 (Resolved): Add the ability to insert a static image into the report.
Add the ability to insert a static image into the report. debi staggs
04:25 PM Bug #4101 (Resolved): Report Designer - Create a manager class for the Static Report Items
Currently there is a small list of static report items that we are using in the reporting module, so these items are ... debi staggs
01:20 PM Bug #4092: record all files referred to in array tokens
fixed in r18455. Derik Barseghian
05:53 AM Bug #4097: here are some new svg icons for actors
New icons: bar chart; scatter plot; pie chart; calculator; filter Paul Allen
05:48 AM Bug #4097 (New): here are some new svg icons for actors
We had occasion to need better icons for some of the standard actors. You might want them as well. I will add them as... Paul Allen
06:53 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
priorities:
- use and show kepler-lsid
- work with aaron, dan, et al to determine what goes in pub ready archive.
- a...
Derik Barseghian

05/20/2009

04:35 PM Bug #4095 (New): Java Package Ontology (e.g. to facilitate Ptolemy component access)
Ptolemy has a number of neat components that are currently very hard to get to.
For example, MonitorReceiverContent...
Bertram Ludaescher
04:30 PM Bug #4094 (Resolved): new Unnamed windows should have a suffix that increments
This would help to differentiate windows. Right now each new window has the same name: Unnamed. Derik Barseghian
03:59 PM Bug #3958: REPORT DESIGNER - Delete report items from the report designer
Report items can now be deleted from the report designer canvas, and, of course, the report. : ) debi staggs
03:39 PM Bug #4093 (Resolved): allow kepler to use OS specific UI elements
I've implemented an extension point in kepler to allow us to build OS specific UI tweaks into kepler without breaking... Chad Berkley
02:52 PM Bug #4092 (Resolved): record all files referred to in array tokens
We currently only recording a file if it's in a string token. Ben requests: check all tokens in array tokens to see i... Derik Barseghian
02:44 PM Bug #4091 (Resolved): Make it so the build system can use a "blessed" version of Ptolemy.
gatekeeping mechanism where by we use a "blessed" version of Ptolemy that is very close to the trunk, but not necessa... David Welker
02:40 PM Bug #4090 (Resolved): You should be able to specify a particular revision number or date with ant update.
The ant update command should optionally allow you to specify a revision:
ant update -Drev=12345
All the module...
David Welker
02:34 PM Bug #4089 (Resolved): Ensure that module-manager, loader, and the build system all work with a new versioning system for modules.
The new versioning system must be implemented and tested so that the module-manager, loader, and build system can wor... David Welker
02:32 PM Bug #4088 (Resolved): Create new configuration system
Per our at the Kepler developer's meeting, we need to develop a unified configuration system starting with a prototype. David Welker
02:05 PM Bug #4049: Import actor that already exists appends strange numbering scheme
Re: comment#4, for example, if an actor RExpressionRain2001 is created and saved in the library, when dragged to canv... Derik Barseghian
11:10 AM Bug #4049: Import actor that already exists appends strange numbering scheme
Soong notes that when dragging an actor with name ending in a digit(s) to canvas, the digits are dropped. Derik Barseghian
11:28 AM Bug #4087: No reset/x button to clear component searches
Making the Cancel button useful when a search is not in progress, to do a reset, seems like a good idea to me. If we ... Derik Barseghian
10:52 AM Bug #4087 (New): No reset/x button to clear component searches
Under both linux and Windows, there is currently no way to clear the results of a search on the components tab. Ther... Oliver Soong
11:08 AM Bug #3764: Kepler needs to support EML 2.1.0
Kepler 1.0.0 doesn't support EML 2.1.0. I know we're moving towards a new release, but since the Kruger stuff is sti... Oliver Soong
10:31 AM Bug #4086 (Resolved): Port-Parameters half-work with composite actors
Under the SDF Director, I can create a Composite Actor containing a Port-Parameter and a Display actor. There are 4 ... Oliver Soong
09:06 AM Bug #4062: Web Services and Data Transformation demo throws a StringOutOfBounds
Fixed: looks like the actor relied on its parameters to be set in a specific order. Daniel Crawl
11:22 PM Bug #1750: Allow KAR files to include jar/class files
KAR files used to contain class files, and wer eboth a successful and necessary part of Kepler 1.0. I am reopening t... Matt Jones
08:52 PM Bug #1750: Allow KAR files to include jar/class files
KAR files will not contain class files or JAR files. Classes and jars will be contained within Kepler modules. KAR ... Aaron Aaron
09:22 PM Bug #3939: Kepler Unique LSID Namespace generation
Documentation for the KeplerLSID system will be maintained here:
https://kepler-project.org/developers/teams/framewo...
Aaron Aaron
05:57 PM Bug #3691: JButton labels truncated on macOSX
Refresh button fixed. Closing. For some reason had to comment out setMaximumSize, even though SearchUIJPanel uses the... Derik Barseghian
05:01 PM Bug #4069: Metacat Authenticated Query fails for specific user/group/dataset combinations
Oh, well there's also a problem with the table Woody_Vca_Sites.txt. The preview window wasn't working right probably... Oliver Soong

05/19/2009

04:24 PM Bug #4069: Metacat Authenticated Query fails for specific user/group/dataset combinations
it's not necessarily the Preview function per se - more that I can see many many errors about numeric format exceptio... ben leinfelder
12:18 PM Bug #4069: Metacat Authenticated Query fails for specific user/group/dataset combinations
Can you clarify the problems you're having with the Preview option? I know in some of the tables there are unusual c... Oliver Soong
11:25 AM Bug #4069: Metacat Authenticated Query fails for specific user/group/dataset combinations
if you update from the development trunk, you should now have three different document types available for the KNB Au... ben leinfelder
03:11 PM Bug #4067: Add "about" widget for kepler on the mac
Thanks for the info, Matt. The icon is currently set in the plist file, and it shows up fine in the Finder, but not ... Chad Berkley
10:59 AM Bug #4067: Add "about" widget for kepler on the mac
Handling the About menu is possible and described in the Java Development Guide for Mac OS X:
http://developer.apple....
Matt Jones
10:43 AM Bug #4067: Add "about" widget for kepler on the mac
It would also be nice to figure out how to make the kepler icon show up in the apple-tab list instead of a generic "e... Chad Berkley
10:40 AM Bug #4067: Add "about" widget for kepler on the mac
Possibly need to change a key/value in the Info.plist file, but that won't work for ant runs, only when Kepler is exe... Chad Berkley
10:38 AM Bug #4067: Add "about" widget for kepler on the mac
Found this:
http://developer.apple.com/documentation/Java/Reference/Java_PropertiesRef/Articles/JavaSystemProperties....
Chad Berkley
02:24 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
'Open Workflows in New Windows' context menu now works. I cobbled this together though, and need to clean it up and m... Derik Barseghian
11:23 AM Bug #3673: Create model for the Report Instance (RIO)
The model for the Report Instance (RIO) has been created. debi staggs
11:19 AM Bug #3636: Support multiple Report formats
We support the report formats as follows: .pdf and .html debi staggs
11:19 AM Bug #3764: Kepler needs to support EML 2.1.0
let's reopen if there are other problems that crop up. I think the dataTable parsing is pretty much the same from eml... ben leinfelder
10:41 AM Bug #3764: Kepler needs to support EML 2.1.0
In the Kepler Registry: updated the Query Service and Authenticated Query Service entries to include EML 2.1 doctypes ben leinfelder
10:23 AM Bug #3764: Kepler needs to support EML 2.1.0
I've added a metadata specification class to the util module (like eml 2.0.0 and eml 2.0.1 have).
Also allowed both "...
ben leinfelder
11:18 AM Bug #3608: Create initial class diagrams for the reporting feature.
Class diagrams for reporting have been created. debi staggs
11:17 AM Bug #3640: Identify items of interest in workflow.
The user can flag items of interest by right clicking on a port in the workflow and using the context menu to add it ... debi staggs
11:16 AM Bug #3667: Mock-up Report Designer UI
The report designer mock up was made and the design implemented and refined. debi staggs
11:15 AM Bug #3666: Create RIO schema
The RIO Schema has been created. debi staggs
11:14 AM Bug #3646: Create ROML Schema
The ROML schema has been created. debi staggs
11:13 AM Bug #3641: Create model for ItemOfInterest
The class 'Item' was created, and this is used to build a list of 'items'. This list has references to ports that ap... debi staggs
11:09 AM Bug #3607: Create model for the Report Object
The object models for the report object (ROML) and the Report Instance (RIO)
have both been created.
debi staggs
11:07 AM Bug #3642: Create model for ReportItem
The model for the report items has been created and is working well. debi staggs
11:06 AM Bug #3645: Create report layout designer
Report Layout Designer has been created, and is working. debi staggs
11:04 AM Bug #3934: Report Designer - editable Report Title field
We are now able to edit the title of the report, and it is added to the report model. debi staggs
11:03 AM Bug #3955: Report Designer - static report item: TEXT
The ability to edit the text in a 'Label' static report item has been implemented. debi staggs
11:02 AM Bug #3955: Report Designer - static report item: TEXT
The ability to edit the text in a 'Label' static report item has been implemented. debi staggs
10:59 AM Bug #3959: Report Designer - Highlight and select a report item panel
The ability to highlight and select a report item panel is now working. Panels are selected when the user clicks on ... debi staggs
07:54 AM Bug #4038: The first time ant change-to is run, it prints a stack trace
This is fixed, I can no longer reproduce it. Christopher Brooks
07:48 AM Bug #4053: deleting open composite actor may delete model
This is fixed by changes to PtolemyFrame. Christopher Brooks

05/18/2009

02:48 PM Bug #4069: Metacat Authenticated Query fails for specific user/group/dataset combinations
this is now an EML 2.1.0 document. Kepler does not yet have support for 2.1.0.
Will look into that - there is a bug f...
ben leinfelder
11:07 AM Bug #4051: R - include R distribution in separate module
R is now in it's own module and the installer can install it separately. Chad Berkley
09:49 AM Bug #4082 (Resolved): New user guide section on modules/module manager
Need to write a new section of documentation on modules and the module manager. Other sections need to be able to re... Chad Berkley
09:48 AM Bug #4081 (Resolved): Rework Appendix B
Rework Appendix B of the User Manual for the 2.0
release.
Chad Berkley
09:47 AM Bug #4080 (Resolved): Rework Section 11
Rework Section 11 of the User Manual for the 2.0
release.
Chad Berkley
09:46 AM Bug #4079 (Resolved): Rework Section 10
Rework Section 10 of the User Manual for the 2.0
release.
Chad Berkley
09:45 AM Bug #4078 (Resolved): Rework Section 9
Rework Section 9 of the User Manual for the 2.0
release.
Chad Berkley
09:44 AM Bug #4077 (Resolved): Rework Section 8
Rework Section 8 of the User Manual for the 2.0
release.
Chad Berkley
09:44 AM Bug #4076 (Resolved): Rework Section 7
Rework Section 7 of the User Manual for the 2.0
release.
Chad Berkley
09:43 AM Bug #4075 (Resolved): Rework Section 6
Rework Section 6 of the User Manual for the 2.0
release.
Chad Berkley
09:42 AM Bug #4074 (Resolved): Rework Section 5
Rework Section 5 of the User Manual for the 2.0
release.
Chad Berkley
09:42 AM Bug #4073 (Resolved): Rework Section 4
Rework Section 4 of the User Manual for the 2.0 release. Chad Berkley
09:41 AM Bug #4072 (Resolved): Rework Section 3
Rework Section 3 for the 2.0 release. Chad Berkley
09:40 AM Bug #4071 (Resolved): Rework Section 2
Rework Section 2 of the User Manual for the 2.0 release. Chad Berkley
09:37 AM Bug #4070 (Resolved): Rework Section 1 and the GSG
Rework Section 1 of the User Manual and the Getting Started Guide for the 2.0 release. Chad Berkley
09:27 AM Bug #3976: Update Documentation for 2.0 release
Thanks for volunteering, Jianwu. You've asked a good question, one that I hadn't thought of. I think we just need t... Chad Berkley
09:25 AM Bug #4008: EML 2 Dataset throws errors when accessing public data from mixed public/private datasets
i'm now getting stuck on the initializing step of the workflow... (osx) ben leinfelder
09:08 AM Bug #4068: File Menu should display 5 most recently used workflows
Hi Ben:
Yes, you're right: remembering the last used directory (even if only within a session) is convenient!
If w...
Bertram Ludaescher
08:43 AM Bug #4068: File Menu should display 5 most recently used workflows
Last I knew, the "last used directory" was remembered (unless you restart Kepler). It's very convenient [for me]. ben leinfelder

05/15/2009

04:05 PM Bug #3976: Update Documentation for 2.0 release
I will take care of <Section 7: Using remote computing resources>. One quick question: if we moved some actors (such ... jianwu jianwu
03:15 PM Bug #3976: Update Documentation for 2.0 release
I finished going through all of the documentation in kepler-docs/outreach/documentation/working. I've made changes w... Chad Berkley
01:20 PM Bug #4069: Metacat Authenticated Query fails for specific user/group/dataset combinations
(In reply to comment #0)
> Regetz confirmed this, but he was able
> to search for a private dataset of his own.
The ...
Jim Regetz
12:02 PM Bug #4069 (Resolved): Metacat Authenticated Query fails for specific user/group/dataset combinations
The problem affects several datasets with similar access permissions, such as judithk.769.12.
These datasets are n...
Oliver Soong
05:30 PM Bug #4062: Web Services and Data Transformation demo throws a StringOutOfBounds
This error is from the web service actor. I'll look into it. Daniel Crawl

05/14/2009

04:58 PM Bug #4013: Make sure duplicate jars are not included in the installer
I wrote a build task to identify all duplicate jar files within the current suite. I identified many jar files that ... Chad Berkley
03:53 PM Bug #4068 (Resolved): File Menu should display 5 most recently used workflows
The 'File' menu in Kepler does not show the most recently opened workflows.
It would be important to have a "Recent ...
Bertram Ludaescher
03:43 PM Bug #4067 (Resolved): Add "about" widget for kepler on the mac
after I changed kepler so it uses the native osx menu bar, there is now an "about kepler" menu item that uses a defau... Chad Berkley
02:15 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
Filter button has been eliminated and table is populated by default, bringing WRM more in line with the mockups. 'Fil... Derik Barseghian
12:23 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
Sorting has been fixed. Derik Barseghian
05:54 PM Bug #4066: Allow legacy LSIDs to be parsed, but not serialized
I've added a kludge to the KeplerLSID class that accepts urn:lsid:<authority>:<namespace>.<object>.<revision>#<anchor... Aaron Aaron

05/13/2009

04:44 PM Bug #4066: Allow legacy LSIDs to be parsed, but not serialized
Example XML snippet was from a kruger TPC workflow that had an ImageJ actor (probably from a while back) in the workf... ben leinfelder
04:43 PM Bug #4066 (Resolved): Allow legacy LSIDs to be parsed, but not serialized
After shifting to a non-IBM implementation of LSIDs, a few workflows were encountered that had actors using dots (.) ... ben leinfelder
04:11 PM Bug #4013: Make sure duplicate jars are not included in the installer
Perhaps better yet, use a checksumming algorithm to check for duplicates. Something like:

find . -name "*.jar" |...
Shaun Walbridge
11:26 AM Bug #4013: Make sure duplicate jars are not included in the installer
This is probably an underestimate of the duplicates because I'll bet that some of the jar files that are in only once... Matt Jones
10:38 AM Bug #4013: Make sure duplicate jars are not included in the installer
Duplicate jar list from Christopher:
bash-3.2$ find . -name "*.jar" -print | awk -F / '{print $NF}' | sort | uniq -c...
Chad Berkley
12:47 PM Bug #4063: Kepler-1.XDev Installer is large
For archival reasons, I think it is very important to release a
source only tar.gz file of Kepler-2.0. The reason is...
Christopher Brooks
10:37 AM Bug #4063: Kepler-1.XDev Installer is large
The duplicate jar problem is in bug 4013. Thanks for getting a list though. I'll copy it over to that bug.
The rea...
Chad Berkley
08:37 AM Bug #4063 (Resolved): Kepler-1.XDev Installer is large
The Kepler-1.XDev installers are very large:
[ ] kepler-1.xDev-osx.jar 12-May-2009 14:32 212M
[ ] kepler-1...
Christopher Brooks
11:59 AM Bug #4060: Copyrights need to be updated to 2009
Updated the copyright.htm file as well as all of the source code that I could find a copyright statement in. Chad Berkley
06:45 PM Bug #4060 (Resolved): Copyrights need to be updated to 2009
The copyrights need to be updated to 2009.
There are some scripts in ptII/adm/copyright.
In particular, ptolemy/c...
Christopher Brooks
11:10 AM Bug #4065 (Resolved): Copy documentation into installer
Make sure the installer includes the documentation from kepler-docs and that the links in the help menu work. Chad Berkley
10:32 AM Bug #4064 (Resolved): remove r installer after installation is complete
delete the file r/module-info/R-2.9.0* after installation of kepler and R is complete to save disc space. Chad Berkley
07:20 PM Bug #4061: Documentation links are not active
The previous build simply knew where to copy these from -- the pdf files needed are in kepler-docs. We should just a... Matt Jones
06:51 PM Bug #4061 (Resolved): Documentation links are not active
In the splash screen, none of the documentation links are active.
Help -> About -> Documentation
Brings up do...
Christopher Brooks
06:54 PM Bug #4062 (Resolved): Web Services and Data Transformation demo throws a StringOutOfBounds
Web Services and Data Transformation demo brings up an exception:
Java.lang.StringIndexOutOfBoundsException: Strin...
Christopher Brooks

05/12/2009

01:54 PM Bug #3893: EML 2 Dataset not working with local data
re-open:
dataFile is not being reloaded when attribute changes.
ben leinfelder
11:02 AM Bug #3893: EML 2 Dataset not working with local data
retargeted for bookkeeping purposes ben leinfelder
11:01 AM Bug #3893: EML 2 Dataset not working with local data
using absolute URL for the local data file even when in the same directory ben leinfelder
01:16 PM Bug #4008: EML 2 Dataset throws errors when accessing public data from mixed public/private datasets
Well, it's more than just annoying error messages. The trunk workflow doesn't work at all for me. On XP, one actor ... Oliver Soong
11:04 AM Bug #3890: EML 2 Dataset has trouble with a certain data table
works for me now. can reopen if turns out the fix was not fully adequate. ben leinfelder
10:26 AM Bug #3890: EML 2 Dataset has trouble with a certain data table
retargeting to 2.0 - want to have this resolved by then (configuration) ben leinfelder
05:21 PM Bug #3890: EML 2 Dataset has trouble with a certain data table
Found that "tab delimited" datatables from Morpho are using "#x09" as the character. This does not work with the HSQL... ben leinfelder
11:02 AM Bug #3892: EML 2 Dataset file path confusion
using absolute URL now ben leinfelder

05/11/2009

01:52 PM Bug #3991: large workflow errors
this needs to be fixed if it remains a problem - retargeting to 2.0 ben leinfelder
01:51 PM Bug #3991: large workflow errors
I cleared the cache and tried opening the workflows (first the parts, then the whole).
It opens - sure there are tons...
ben leinfelder
01:37 PM Bug #3991: large workflow errors
yikes! that's a lot of memory.
rain.xml seems to open (eventually) for me.
Looking into the "Unable to parse the Met...
ben leinfelder
01:08 PM Bug #3691: JButton labels truncated on macOSX
Crawl reports the Refresh button on the Data sources is also truncated. Derik Barseghian
01:00 PM Bug #4036: WRM - connect to configurable provenance store
re: comment#1, I just verified it works on linux too. Derik Barseghian
12:47 PM Bug #4036: WRM - connect to configurable provenance store
Made a little progress - on the mac (and probably works on linux) the WRM now uses the top level recorder settings if... Derik Barseghian
12:51 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
The two bugs related to search cells getting stuck in edit mode have been fixed.
A gui bug with row highlighting has...
Derik Barseghian
10:44 AM Bug #4008: EML 2 Dataset throws errors when accessing public data from mixed public/private datasets
I recognize that the error messages are annoying, but I'm not sure what the alternative is.
If you are authenticated ...
ben leinfelder
 

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