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From 10/05/2009 to 11/03/2009

11/04/2009

10:42 PM Bug #4529: NPE while saving KAR crashes Kepler
I can reproduce this on 21316. I'm not sure which of these steps is absolutely necessary, but this is what I do:
1...
Oliver Soong
10:30 PM Bug #4529: NPE while saving KAR crashes Kepler
Incidentally, I can restart Kepler and open the saved KAR. Oliver Soong
10:19 PM Bug #4529 (Resolved): NPE while saving KAR crashes Kepler
While exploring another bug, I encountered this NPE, and it entirely killed Kepler. This happened after saving a wor... Oliver Soong
10:14 PM Bug #4528 (Resolved): BREAK_BEFORE property for report sections does not work
I'm not sure if this is broken or just hasn't been implemented, but if I create a trivial workflow and create a trivi... Oliver Soong
09:02 PM Bug #4522: Folder not found in library index
I've confirmed that this occurs when you try to save over the archive that is currently opened. Create a KAR archive... Oliver Soong
05:28 PM Bug #4522 (Resolved): Folder not found in library index
I wasn't able to get any assistance with this on IRC, and this has occurred multiple times. I haven't yet been able ... Oliver Soong
08:01 PM Bug #4527: reports cannot be loaded when InstanceAuthNamespace changes
It looks like a workaround is to transfer the InstanceAuthNamespace file from one computer to the other. It requires... Oliver Soong
07:39 PM Bug #4527 (Resolved): reports cannot be loaded when InstanceAuthNamespace changes
Generate a report and save the KAR. Close Kepler, clean-all, delete the configuration folder, LastObjectID, and .pto... Oliver Soong
07:00 PM Bug #4523: apply button while editing ports acts like commit
Fixed in the Ptolemy head.
I'm not sure what's so difficult about this little bit of code that prevents me
from getti...
Christopher Brooks
06:29 PM Bug #4523: apply button while editing ports acts like commit
Also, for what it's worth, this problem occurs with r21314. However, with r21218, the commit button seems to behave ... Oliver Soong
06:27 PM Bug #4523 (Resolved): apply button while editing ports acts like commit
I think this was triggered by the fix for 4478. The apply button now acts like the commit button, as the ports windo... Oliver Soong
06:59 PM Bug #4526 (Resolved): multi-line entries can be put into text items in reports, but they are displayed on a single line
I'm not sure if this is a bug or an enhancement request. I guess it depends on what the intention was. Are text box... Oliver Soong
06:39 PM Bug #4525: saved KAR and memory report can be out of sync
And I'm not touching the Refresh (using current layout) button, so that should have nothing to do with it. Oliver Soong
06:38 PM Bug #4525 (Resolved): saved KAR and memory report can be out of sync
Create a simple report sand save it. Now change it, close the report and re-open the KAR (I've been right-clicking i... Oliver Soong
06:34 PM Bug #4524 (Resolved): no prompt to save a changed report
If I change the report, don't save, and close the window, I get no prompt to save it. Oliver Soong
05:34 PM Bug #4521: KNB data error checking is overly aggressive
This is a problem with some configuration values. I'll get this fixed tomorrow. Chad Berkley
05:22 PM Bug #4521: KNB data error checking is overly aggressive
I think this is my fault. I'm trying to track it down now. Chad Berkley
05:03 PM Bug #4521 (Resolved): KNB data error checking is overly aggressive
On r21314, I can no longer access the Kruger data. I believe this is due to some overly aggressive error checking on... Oliver Soong
04:17 PM Bug #4520: Login Anonymously Fails
Errors from the console:
[run] searching..
[run] ldap authenticating...
[run] creating gui
[run] d...
Chad Berkley
04:16 PM Bug #4520 (Resolved): Login Anonymously Fails
If you do a data search, you are prompted to login. If you click the "Login Anonymously" button, not only does it no... Chad Berkley

11/03/2009

03:46 PM Bug #4519: SDF Director cannot schedule when composite actor input port is disconnected
This Ptolemy model has a top level with a const connected to one port of a two port composite. Inside the composite,... Christopher Brooks
03:13 PM Bug #4519: SDF Director cannot schedule when composite actor input port is disconnected
I tried disconnected graphs, but it still throws the error.
I realize it's a slightly complicated case, as the sched...
Oliver Soong
03:09 PM Bug #4519: SDF Director cannot schedule when composite actor input port is disconnected
Ah, nevermind, I see the test cases. Christopher Brooks
03:08 PM Bug #4519: SDF Director cannot schedule when composite actor input port is disconnected
Need a test case here.
Also, try selecting "Allow disconnected graphs" in the SDF director.
Christopher Brooks
02:41 PM Bug #4519 (New): SDF Director cannot schedule when composite actor input port is disconnected
A workflow with an RExpression actor with unconnected input ports will work (see attached example 1). However, if I ... Oliver Soong
03:33 PM Bug #4507: report designer losing content when there are too many items
This is looking somewhat more serious. It seems like the report is actually losing content when it no longer fits in... Oliver Soong

11/02/2009

01:32 PM Bug #4476: Tagging / Workflow Run Manager interaction problems
Number 2 should also work now. Sean Riddle

10/30/2009

04:49 PM Bug #4476: Tagging / Workflow Run Manager interaction problems
Tagging all selected rows sounds more desirable to me. It would be common for someone to run a model a bunch of time... Matt Jones
04:17 PM Bug #4476: Tagging / Workflow Run Manager interaction problems
An easy solution for now would be to disable tagging (probably changing the displayed tagging context to something li... Sean Riddle
04:14 PM Bug #4476: Tagging / Workflow Run Manager interaction problems
Looks like Sean has fixed #1.
I've fixed #3.
#2 still a problem.
Derik Barseghian
04:25 PM Bug #4518 (Resolved): Workflow Run Manager - no imported run tags
If you export a run that has tags into a kar, then delete that run from the WRM, then open that kar, the imported run... Derik Barseghian

10/29/2009

03:12 PM Bug #4506: Exception is thrown during workflow execution
If it comes to the use case - yes and no.
It fails during execution of the workflow that combines PN and DDF directo...
Michal Owsiak
01:39 PM Bug #4514: Files are being saved in the Kepler installation directory
There are two options here, keep the configuration directory in the installation directory and save the other files t... Aaron Aaron
12:05 PM Bug #4514 (Resolved): Files are being saved in the Kepler installation directory
There are still files and directories being saved, at runtime, to the Kepler installation directory. These files nee... Chad Berkley
01:33 PM Bug #4324: ptII/module-info/revision.txt not being updated
Working again. I'll monitor this to make sure it keeps working. Chad Berkley
12:46 PM Bug #4324: ptII/module-info/revision.txt not being updated
My cron job has, for some reason, decided not to find ant. I'm working with Nick on figuring this out. Chad Berkley
01:30 PM Bug #4273: Ctrl+E operates on mouse position, not selection
Very minor, moving to post 2.0. Chad Berkley
01:29 PM Bug #4202: typos in modules.txt are ignored
Not critical for users so moving to post 2.0. Chad Berkley
01:27 PM Bug #4430: hsql database name and port in Kepler should be configurable
Not critical for users so moving to post 2.0. Chad Berkley
01:25 PM Bug #4354: Enable the build system to work on multiple SCM systems.
Not critical for users so moving to post 2.0. Chad Berkley
01:25 PM Bug #4339: build system needs to provide more information on modules
Not critical to the user experience in kepler, so moving to post 2.0 Chad Berkley
01:24 PM Bug #4097: here are some new svg icons for actors
Punting on this until after 2.0 since it is not critical. Chad Berkley
01:18 PM Bug #4311: Build system appears to lock if there is a conflict upon update
pushing to post 2.0 since this does not affect the user experience. Chad Berkley
01:15 PM Bug #4153: report-overrides
since this does not affect the user experience, I'm pushing this to post 2.0 Chad Berkley
01:13 PM Bug #4246: Reorganize code in util, core and gui modules
Since this is mostly done and will not effect the user experience of kepler 2.0, i'm pushing this to a post-2.0 miles... Chad Berkley
01:12 PM Bug #3948: Create new configuration system supporting modules
The configuration system is now 99% done with only minor tweaks needed. I am still finding and adding utility method... Chad Berkley
12:18 PM Bug #4517 (Resolved): Verify that the search capabilities work
As per the roadmap, search capability requirements include:
* local search of direstories
* remote search of repo...
Chad Berkley
12:15 PM Bug #4516 (Resolved): Module Manager needs ability to install modules needed by KARs
The roadmap specifies that the module manager should be able to automatically install modules needed by a specific KA... Chad Berkley
12:12 PM Bug #4515 (Resolved): Finish and Document the Save/Open KAR file functionality
We need to finish the save/open functionality as listed in the kepler roadmap. This functionality should also be doc... Chad Berkley
10:43 AM Bug #4513 (Resolved): On the PC the paint transparency for buttons doesn't redraw correctly
Only on the PC, the buttons that have semi-transparent paint end up showing some of the text strings from tables in t... debi staggs

10/28/2009

03:43 PM Bug #4512 (Resolved): missing entries with multiple copies of the same KAR file in a single repository
Things don't seem to work right if I have multiple copies of the same KAR file in a single local repository. I think... Oliver Soong
03:30 PM Bug #4509: Report instance not being serialized with Save Archive
My mistake, the pdf shouldn't be saved with Save Archive since it's specific to an instance. Derik Barseghian
05:58 PM Bug #4509 (Resolved): Report instance not being serialized with Save Archive
In WRP it looks like the report instance (pdf) is no longer being serialized into the KAR when you File => Save Archive. Derik Barseghian
01:54 PM Bug #4511: There are 2 toolbars in the Kepler main window
That is correct. I think the tag entry bar on the main toolbar does not look particularly cluttered, but putting tags... Sean Riddle
01:50 PM Bug #4511: There are 2 toolbars in the Kepler main window
So there's a tags toolbar and the regular toolbar, and the tags menu is on the regular toolbar but the tags themselve... Oliver Soong
01:49 PM Bug #4511: There are 2 toolbars in the Kepler main window
That's where tags go. If you add a tag, the toolbar gets sized appropriately. Sean Riddle
01:46 PM Bug #4511 (Resolved): There are 2 toolbars in the Kepler main window
There are 2 toolbars in the Kepler main window, one of which is empty. I've seen this using wrp on Windows and linux... Oliver Soong
12:24 PM Bug #4510 (Resolved): can't add local repository if its name begins with the name of another local repository
If I've added C:\Documents and Settings\soong\Desktop\kruger as a local repository, I can't add C:\Documents and Sett... Oliver Soong
11:07 AM Bug #4504: Semantic Type Browser
This is no longer happening. Derik Barseghian
05:05 PM Bug #4508: report viewer should listen for executions to finish
added handling for the event being broadcast by reporting ben leinfelder

10/27/2009

04:27 PM Bug #4508 (Resolved): report viewer should listen for executions to finish
After running a workflow in the report viewer, the user must "change" to the report viewer before the report is updat... Oliver Soong
04:25 PM Bug #4507 (Resolved): report designer losing content when there are too many items
If I have a lot of items in the report designer, the scroll bar seems to be too short for the content. Eventually, t... Oliver Soong
02:20 PM Bug #4506: Exception is thrown during workflow execution
Is there a test case? Christopher Brooks
01:46 PM Bug #4506 (Resolved): Exception is thrown during workflow execution
Within PN like workflow it seems that one thread iterates through the hashmap while other one modifies the data of th... Michal Owsiak
01:14 PM Bug #4505 (Resolved): NPE from Semantic Search
On os X or linux w/ the kepler suite, I get an NPE when I try to run a search in the Semantic Search dialog:
...
Derik Barseghian
01:06 PM Bug #4504 (Resolved): Semantic Type Browser
On os X 10.5 w/ the wrp suite I get an error when I select an ontology in the Semantic Type Browser (right click on c... Derik Barseghian
12:33 PM Bug #4503 (Resolved): Suggest Similar Components gives an error
If I right click on an actor on canvas and select Suggest => Similar Components, I get an NPE. This happens in the ke... Derik Barseghian

10/22/2009

04:13 PM Bug #4483: Module dependencies in MoML files
I've implemented and checked in a prototype of solution 1. At the moment, it only solves the original bug if you cle... Aaron Aaron
03:27 PM Bug #4483: Module dependencies in MoML files
If you are going to implement a temporary solution, I think you should instead
just save the current active configura...
David Welker
02:47 PM Bug #4483: Module dependencies in MoML files
Yes, OSGi allows dependencies to span multiple versions. Definitely read the OSGi spec if you haven't already. Woul... Aaron Aaron
02:39 PM Bug #4483: Module dependencies in MoML files
Besides OSGi, another technology to consider for inspiration is Project Jigsaw. Check out this link here for more inf... David Welker
02:19 PM Bug #4483: Module dependencies in MoML files
Hi Aaron,
I think it is an interesting idea.
So, you are basically saying that when an actor is added to the workfl...
David Welker
01:00 PM Bug #4483: Module dependencies in MoML files
David, what do you think about putting the responsibility not on an automated class/module detection system or on the... Aaron Aaron
12:56 PM Bug #4483: Module dependencies in MoML files
Your point about overrides is not correct. If you are using a module that includes an override and your workflow uses... David Welker
12:33 PM Bug #4483: Module dependencies in MoML files
a class-based decision about which modules are required won't work in cases where we are using class overrides... ben leinfelder
12:30 PM Bug #4483: Module dependencies in MoML files
Good point. But this can be solved by simply making the current active configuration the default. If the workflow eng... David Welker
12:15 PM Bug #4483: Module dependencies in MoML files
Storing the active module configuration in the kar would certainly do the trick. I think it may be too restrictive t... Aaron Aaron
05:15 PM Bug #4483: Module dependencies in MoML files
This is the reason I believe we need to store the active module configuration inside the KAR is some manner. Then whe... David Welker
05:10 PM Bug #4483: Module dependencies in MoML files
Definitely inelegant. Down the road could it be a serious problem though? Should we disallow even the attempt to op... Aaron Aaron
02:48 PM Bug #4447: Change Icon for Dynamic Report Items
Changed this to use the actor icon for now, since that is visually associated with the workflow. debi staggs
02:47 PM Bug #4445: Fix white backgrounds for button images
This is now fixed, so that the backgrounds are transparent. debi staggs
11:46 AM Bug #4481: KNB authentication and pulling data
i've added the endpoint to the name of the EML datasource so that they both show in the result set if you have both s... ben leinfelder
09:23 AM Bug #4481: KNB authentication and pulling data
What do you think it _should_ look like when you end up searching what are essentially the same sources? Right now th... ben leinfelder
05:47 PM Bug #4481: KNB authentication and pulling data
(In reply to comment #5)
> That, uh, would be because you apparently aren't in the kruger-tpc group that
> has access...
Jim Regetz

10/21/2009

04:17 PM Bug #4483: Module dependencies in MoML files
You can still execute the workflow after skipping those class not found exceptions when you open the workflow - but i... ben leinfelder
04:15 PM Bug #4483 (Resolved): Module dependencies in MoML files
To reproduce:
Save a KAR from the WRP suite
change to the kepler suite
on startup you see the error:
Error enc...
Aaron Aaron
03:02 PM Bug #4482: JRE Exception Access Violations
The problem is likely specific to the machine, graphics card, OS and JVM.
Try upgrading the JRE that you are using.
...
Christopher Brooks
02:53 PM Bug #4482: JRE Exception Access Violations
Is there anything I can do to avoid this? I hate saving my work. Oliver Soong
02:43 PM Bug #4482: JRE Exception Access Violations
These are Java issues. Both stack traces show the problem being in the
AWT-EventQueue thread.
The one with a usefu...
Christopher Brooks
02:10 PM Bug #4482 (Resolved): JRE Exception Access Violations
I've gotten a couple of these. All of Kepler just goes without warning. I have 2 error logs, which I will attach. ... Oliver Soong
02:00 PM Bug #4478: Configuring ports
I modified PortConfigurerDialog._apply() so that if the change request fails,
then the port configurer dialog will cl...
Christopher Brooks
12:04 PM Bug #4478: Configuring ports
It's frustrating that we can all see the original bug, but can't reliably replicate it.
As for the port swapping thi...
Oliver Soong
11:54 AM Bug #4478: Configuring ports
I was able to reproduce this once, but now I can't.
The problem here is that swapping the name of two ports (or any ...
Christopher Brooks
10:27 AM Bug #4478: Configuring ports
I can't seem to go through the actions that replicate it but it happened again yesterday for me and I wasn't doing an... shirley shirley
09:41 AM Bug #4478: Configuring ports
I can't seem to figure out exactly what replicates it. The closest I can come is getting ports to swap relations.
I...
Oliver Soong
05:38 PM Bug #4478: Configuring ports
Yep, it looks like a bug. Let me know if you can replicate it. I just tried it in Ptolemy and could not get a stack... Christopher Brooks
11:48 AM Bug #4439: reporting displays output for a different actor
This is looking more and more like an intricacy of Provenance recording. My hunch is that when you first add the RExp... ben leinfelder
11:30 AM Bug #4359: Model Reference causes String index out of range error in variable setter
The exception is from the provenance recorder. Daniel Crawl
11:27 AM Bug #4481: KNB authentication and pulling data
That, uh, would be because you apparently aren't in the kruger-tpc group that has access... Regetz? Oliver Soong
11:19 AM Bug #4481: KNB authentication and pulling data
hmm I see. I was not capitalizing Kruger. I'm able to see results using only authenticated interface but now I'm gett... shirley shirley
11:10 AM Bug #4481: KNB authentication and pulling data
What are your search terms? There's a surprise about case. Searching for kruger and Kruger are the same for unauthe... Oliver Soong
11:02 AM Bug #4481: KNB authentication and pulling data
I've tried only searching through the authenticated interface sources, but when I do this, I don't receive any result... shirley shirley
11:22 AM Bug #4436: composite actor output ports cannot be added to reports
Did some more investigation:
-we can allow CompositeActor ports to be added to the report layout, but provenance isn'...
ben leinfelder
10:28 AM Bug #4441: reporting fails to output figure
I removed the ProvenanceRecorder and ReportingListener entries from the MOML of the bovine workflow. Then I opened th... ben leinfelder
09:31 AM Bug #4469: Report Viewer - labels take up too much space
increased the proportional width of the center (main content) column ben leinfelder
08:55 AM Bug #4276: RExpression temp files can collide
included in r21133 now ben leinfelder
08:53 AM Bug #4276: RExpression temp files can collide
i had to add an extra display actor so that type checking did not fail on the second run of the workflow, but that's ... ben leinfelder
08:52 AM Bug #4276: RExpression temp files can collide
about to submit the fix that oliver provided. ben leinfelder
05:25 PM Bug #4470: Report Viewer - labels should be vertically centered
used this FOP property in the table-cell: display-align="center" ben leinfelder
05:08 PM Bug #4468: Report Viewer - message to run workflow first
added MessageHandler.message() if no previous executions were found. i believe that's less intrusive than rearranging... ben leinfelder

10/20/2009

04:56 PM Bug #4474: Report viewer - enable scroll wheels
this is actually a FOP limitation...this is in the FOP source for PreviewPanel class that we use:
"// FIXME should ad...
ben leinfelder
03:59 PM Bug #4471: Report Viewer - remove TOC
removed from the configuration in WRP suite. ben leinfelder
03:58 PM Bug #4481: KNB authentication and pulling data
Shirley, just FYI, the authentication window only pops up when needed. That means the first time you do an authentic... Oliver Soong
03:09 PM Bug #4481 (Resolved): KNB authentication and pulling data
In order to sign into KNB with my username and password, I need to clean my cache (no way to manual force the authent... shirley shirley
03:58 PM Bug #4472: Report Viewer - use different ViewPane class
added SingleViewPane class and am now using it in the WRP suite for the Report Viewer view ben leinfelder
03:33 PM Bug #4466: Report Designer - report layout not shown when opening KARs
using the event-state module to broadcast to the report layout UI that the report layout model has changed and that i... ben leinfelder
10:32 AM Bug #4478: Configuring ports
I think I'm able to replicate this. FYI, I still have 12506K memory free. I'm not sure it's a memory issue, and I'm... Oliver Soong

10/19/2009

01:56 PM Bug #3948: Create new configuration system supporting modules
I've been working on prototyping and setting up unit tests for the configuration system. There are a few issues I've... Chad Berkley
01:15 PM Bug #4465: Report Designer - "drag to here" paper should disappear
'Drag to here' paper now disappears whenever you drag a report item panel into the report. It also re-appears if you... debi staggs
12:25 PM Bug #4362: component search performance
Subsequent searches increase library refresh times substantially for large result sets. This is probably due to obje... Aaron Aaron
12:07 PM Bug #4362: component search performance
After merging the tree the results of the timing analysis are below. The data set used was slightly different from b... Aaron Aaron
12:24 PM Bug #4397: Panel should get selected whenever it has the focus
Panel is now selected and highlighted whenever it gets the focus. debi staggs
12:24 PM Bug #4464: Report Designer - selection pointer behavior
- Crosshair point has been removed.
- Arrow turns to finger on hover, except for text areas.
- Clicking anywhere (or ...
debi staggs
12:21 PM Bug #4402: When a report item is deleted clear the properties window
What currently happens here, is that when a selected report item is deleted, then that panel disappears, and the sele... debi staggs
11:37 AM Bug #4449: exception when dragging workflow
I am unable to reproduce this. Can you give more detail on how to reproduce this? What actors you're using, what OS... Aaron Aaron
10:34 AM Bug #4401: Synchronize properties with selected report item
The properties panel now displays the properties for whichever report item panel is selected. debi staggs

10/17/2009

09:47 PM Bug #4480 (In Progress): can't view more than one of workflow editor, report designer, and report viewer at a time
It's a little frustrating to have to constantly find that little menu in the upper right hand corner and flip between... Oliver Soong
09:40 PM Bug #4471: Report Viewer - remove TOC
I like having that there. It lets me know what I'm looking at in a succinct manner the report designer can't because... Oliver Soong

10/16/2009

04:24 PM Bug #4475: Order context menu items consistently
did that already Aaron Aaron
12:15 PM Bug #4475 (Resolved): Order context menu items consistently
There is a mix of options, sure, but options that appear across different context menus (ie "Open") should appear in ... ben leinfelder
04:24 PM Bug #4463: Grey out component names in the component library that can not be dragged to the canvas
*** Bug 4477 has been marked as a duplicate of this bug. *** Aaron Aaron
04:24 PM Bug #4477: Grey out "undraggables"
duplicate
*** This bug has been marked as a duplicate of bug 4463 ***
Aaron Aaron
12:17 PM Bug #4477 (Resolved): Grey out "undraggables"
In the Components tree we now have non-workflow items (items contained in KARs). These should be marked as different ... ben leinfelder
04:11 PM Bug #4448: KAREntry dependencies should be observed during KAR Cacheing
KAR lsid dependencies are now observed during cacheing of KAR contents. Aaron Aaron
04:11 PM Bug #4479 (Resolved): Error messages are not imported during run import
When importing a WorkfowRun that contains error messages into provenance (creating a 'husk run'), the error messages ... Derik Barseghian
04:07 PM Bug #4462: Component search in remote repositories not working
The problem here was that org.kepler.objectmanager.repository.EcogridRepositoryLibrarySearcher was set as the _reposi... Aaron Aaron
04:03 PM Bug #4392: Delete KARCacheObject
KARCacheObject has been deleted. Aaron Aaron
03:53 PM Bug #4478: Configuring ports
You are probably out of memory, next time use the OS to check how much
memory is being used. Also, look under Tools ...
Christopher Brooks
03:36 PM Bug #4478 (New): Configuring ports
When the Kepler dev has been running for a long time (a few hours), there appears to be a problem with the configurin... shirley shirley
03:26 PM Bug #4450: Saving workflow in Windows 7
I shut down kepler and restarted and the problem seems to have disappeared.
(In reply to comment #2)
> I can't repli...
shirley shirley
12:16 PM Bug #4476 (Resolved): Tagging / Workflow Run Manager interaction problems
There are some problems with Tagging /WRM interaction. We can add/refine this list as we go.
1) Displaying the tag...
Derik Barseghian
12:08 PM Bug #4474 (Resolved): Report viewer - enable scroll wheels
The viewer does not respond to scroll wheel actions currently. It should! ben leinfelder
12:06 PM Bug #4473 (Resolved): Add WRM to bottom of report viewer for navigation
Still need to design exactly how this will work out. ben leinfelder
12:05 PM Bug #4472 (Resolved): Report Viewer - use different ViewPane class
We have too many unused "areas" of the view where it looks like there should be some other window hidden. we just nee... ben leinfelder
12:02 PM Bug #4471 (Resolved): Report Viewer - remove TOC
the "Report Contents" tab is mostly useless - remove it from this view ben leinfelder
12:00 PM Bug #4470 (Resolved): Report Viewer - labels should be vertically centered
Instead of appearing at the top of the item that they are labeling, L and R labels should be in the vertical center o... ben leinfelder
11:58 AM Bug #4469 (Resolved): Report Viewer - labels take up too much space
left and right labels seem to hog real estate unnecessarily. ben leinfelder
11:57 AM Bug #4468 (Resolved): Report Viewer - message to run workflow first
If switched to the report viewer before running a workflow, there should be a message indicating that you must run th... ben leinfelder
11:54 AM Bug #4467 (Resolved): WRP - restarting/reopening Kepler throws error
Chad reported this during devLunch:
error restarting/opening Kepler:
"ERROR (org.kepler.reporting.rio.fop.ReportPa...
ben leinfelder
11:29 AM Bug #4466 (Resolved): Report Designer - report layout not shown when opening KARs
If I save a workflow+report layout as a KAR and then attempt to reopen the KAR after restarting Kepler, the report la... ben leinfelder
11:24 AM Bug #4465 (Resolved): Report Designer - "drag to here" paper should disappear
After we have one or more items on the report we should hide the helpful "drag here" paper. If all items are deleted ... ben leinfelder
11:23 AM Bug #4464 (Resolved): Report Designer - selection pointer behavior
-do not use cross hair pointer anywhere
-arrow turns to finger on hover over any item (anywhere on item except text ...
ben leinfelder
11:22 AM Bug #4325: Workflow Run Manager - deleted runs sometimes reappear after Kepler relaunch
This is fixed, but we need to test to see if the fix degraded performance (so far it seems fine) before closing.
Dan...
Derik Barseghian
11:19 AM Bug #4161: Develop kepler workflow execution engine
re-targeting to wrp module, although it may be a 2.0 bug to extend kepler so that it can receive user credentials whe... ben leinfelder
11:14 AM Bug #4247: Application menu items sometimes disappear on OS X
The workaround in comment #7 works, and was implemented.
This bug should now serve as a reminder: before wrp-modules...
Derik Barseghian
11:08 AM Bug #4457: Workflow Run Manager - past Report Layouts don't open
This bug likely depends on #4132, which I should fix before more work goes into this one. Derik Barseghian
10:55 AM Bug #4231: Workflow Run Manager - failed runs should be highlighted red
Runs are highlighted a light red now. This can be closed when #4230 is fixed. Derik Barseghian
10:43 AM Bug #4410: Cannot open KARs from arbitrary location on disk
I vote, and am moving to, wrp-modules-1.0.0 target for this bug. Derik Barseghian

10/15/2009

12:41 PM Bug #4462: Component search in remote repositories not working
Adding to this bug the feature enhancement of being able to search in multiple remote repositories for components... Aaron Aaron
12:36 PM Bug #4462 (Resolved): Component search in remote repositories not working
Selecting the checkboxes next to remote repositories from the source button of the component library tab does not inc... Aaron Aaron
12:40 PM Bug #4463: Grey out component names in the component library that can not be dragged to the canvas
It's my guess that this will be hard to do, but will look into it. Aaron Aaron
12:40 PM Bug #4463 (Resolved): Grey out component names in the component library that can not be dragged to the canvas
It was suggested that to be more in-line with historical functionality of the component library that the names of com... Aaron Aaron
12:25 PM Bug #4448: KAREntry dependencies should be observed during KAR Cacheing

Turns out the reporting module did not break this as I had assumed previously. It is a good idea to implement this ...
Aaron Aaron
12:15 PM Bug #4381: Open KAR: needs to work when opening from outside the /workflows directory
marking this as a duplicate, use bug 4410 for further discussion and tracking
*** This bug has been marked as a dupl...
Aaron Aaron
12:15 PM Bug #4410: Cannot open KARs from arbitrary location on disk
*** Bug 4381 has been marked as a duplicate of this bug. *** Aaron Aaron
12:14 PM Bug #4321: Semantic types on workflows saved into library not searchable
semantic types on workflows are now searchable in the component library, closing this bug, see bug 4362 for further t... Aaron Aaron
07:41 PM Bug #4458 (New): test for moving kepler directory
I've been getting an error during the first launch after an ant clean-cache when using the wrp suite, to do with miss... Derik Barseghian
05:52 PM Bug #4431: Export Archive actions should share code where possible
Because the WorkflowRun KAR is generated without using the ExportArchiveAction functionality from the gui, it is impo... Aaron Aaron
05:43 PM Bug #4457: Workflow Run Manager - past Report Layouts don't open
We found out today that the ReportLayoutKAREntryHandler was serializing the ReportLayout object to the cache as xml i... Aaron Aaron
05:13 PM Bug #4457 (Resolved): Workflow Run Manager - past Report Layouts don't open
If in WRP you create a report layout, run the workflow, quit and restart kepler, and then "Open Workflow in New Windo... Derik Barseghian
05:06 PM Bug #4456 (Resolved): Workflow Run Manager in Report Viewer
If in WRP you change to the Report Viewer and unhide the bottom panel where the Workflow Run Manager normally is, it'... Derik Barseghian

10/14/2009

04:50 PM Bug #4455 (Resolved): provenance schema must meet tag storage and search needs
V8 of the provenance schema must provide for tag storage and search. We will need to search for runs and workflows th... Derik Barseghian
04:41 PM Bug #4454 (Resolved): Workflow Run Manager - ability to display new run tags
To tag a run, you select the row in the WRM table and enter or select a new tag with the tagging ui. As soon as a run... Derik Barseghian
04:34 PM Bug #4453 (Resolved): tags don't show up in snow leopard (10.6)
Under snow leopard, you can see the Tags drowndown, but you never see any tags that you add -- they normally appear i... Derik Barseghian
03:54 PM Bug #4450: Saving workflow in Windows 7
I can't replicate this under my Windows 7 build, either at build 21037 or 21048. This includes calling File->Save As... Oliver Soong
03:26 PM Bug #4450: Saving workflow in Windows 7
I don't have access to Windows 7, can you try running a clean Ptolemy build
instead of a Kepler build?
To access the...
Christopher Brooks
01:58 PM Bug #4450 (Resolved): Saving workflow in Windows 7
I'm working on a PC with Windows 7. I've created a new workflow and would like to save it so I can open it up later b... shirley shirley
01:31 PM Bug #4449 (Resolved): exception when dragging workflow
I get the following exception when trying to drag a workflow to the canvas from the workflows folder after saving a k... Chad Berkley
08:24 PM Bug #4362: component search performance
Component search is working well now. Speed is very good, results are merged back into one tree, the search is now c... Aaron Aaron

10/13/2009

04:47 PM Bug #4448 (Resolved): KAREntry dependencies should be observed during KAR Cacheing
The lsid dependency mechanism for KAREntries was implemented for opening items from a KAR in the proper order (so a w... Aaron Aaron

10/12/2009

04:55 PM Bug #4362: component search performance
I've added an advanced button to the Component search that allows the user to configure what they are searching for. ... Aaron Aaron
03:33 PM Bug #4390: Semantic Type tag deletion does not remove component from Ontology in the component library
close this bug, the component search is only searching over cached items so this no longer applies Aaron Aaron
03:13 PM Bug #4390: Semantic Type tag deletion does not remove component from Ontology in the component library
I'm a bit unclear on this behavior. If you're saying that the workflow still is
returned on a search for its tag even...
Sean Riddle
03:13 PM Bug #4447 (Resolved): Change Icon for Dynamic Report Items
Make item for Dynamic Report Items more representative of an actor / worflow component icon. debi staggs
01:11 PM Bug #4446: serialized workflowRuns should have use a date standard
fixed in r55819. Serialized dates look like 2009-10-12T12:56:36.266-07:00. This isn't the most human readable, but it... Derik Barseghian
12:16 PM Bug #4446 (Resolved): serialized workflowRuns should have use a date standard
Serialized workflowRuns should use a date standard. I'd also like them to be human readable. I'm currently planning t... Derik Barseghian

10/09/2009

03:07 PM Bug #4441: reporting fails to output figure
Will this workflow ever run on OS X? ben leinfelder
02:58 PM Bug #4441: reporting fails to output figure
i'm finding that reporting classes do not seem to be invoked when running this workflow.
have to track it down furthe...
ben leinfelder
12:10 PM Bug #4441: reporting fails to output figure
what are the R package dependencies i need?
"sp"
"rgdal"
etc?
ben leinfelder
09:48 AM Bug #4441: reporting fails to output figure
is there anything on the console that indicates an error/exception with the FOP rendering? ben leinfelder
11:48 AM Bug #4399: Highlighting of panel should be more obvious
The highlighting of the report item panels is now much more obvious. They now change from a very light semi-transpar... debi staggs
11:46 AM Bug #4445 (Resolved): Fix white backgrounds for button images
The report items now have a semi-transparent green background that makes it easier to distinguish the selected from t... debi staggs
09:43 AM Bug #4440: null pointer exception on viewing report when workflow has not been run
added check for null last execution id - will not try to continue assembling/rendering report if no execution is found. ben leinfelder
08:53 AM Bug #4443: gui-free class for provenance store settings
This is true of the "ReportingListener" as well - it requires that the workflow was authored in the gui (and saved) b... ben leinfelder
08:48 AM Bug #4436: composite actor output ports cannot be added to reports
while inconvenient, it sounds like you can still get the Token that passes through this port. sort of a "work around"... ben leinfelder

10/08/2009

02:59 PM Bug #4362: component search performance
From meeting with Sean and Derik.
NamedOntClass.getName() does not always return the name that appears in the compon...
Aaron Aaron
12:29 PM Bug #4443: gui-free class for provenance store settings
I phrased this awkwardly. When programming I just want an easier way to get a new ProvenanceRecorder for the provenan... Derik Barseghian
09:30 PM Bug #4443: gui-free class for provenance store settings
This sounds interesting, but I'm not sure I fully understand it.
Could this be a bit further expanded?
Can one not u...
Bertram Ludaescher
05:01 PM Bug #4443 (Resolved): gui-free class for provenance store settings
It would be nice to have a gui-free class that gives you a new ProvenanceRecorder, created from your currently-in-use... Derik Barseghian
06:57 PM Bug #4325: Workflow Run Manager - deleted runs sometimes reappear after Kepler relaunch
Decreased write_delay to 100ms in r20931. Needs more testing to check for any performance hit, but so far so good. I ... Derik Barseghian
05:05 PM Bug #4325: Workflow Run Manager - deleted runs sometimes reappear after Kepler relaunch
Dan and I discussed this, it seems like a likely culprit. I'm going to try to change the write delay to see if it fix... Derik Barseghian
06:40 PM Bug #4444 (Resolved): Reevaluate Cache and Library startup procedure. Restore performance enhancements.
Need to revisit the startup caching and indexing procedures to see what makes sense with new systems and to restore t... Aaron Aaron

10/07/2009

04:43 PM Bug #4325: Workflow Run Manager - deleted runs sometimes reappear after Kepler relaunch
HSQL delays writing to the file system after updates occur to the database. According to the docs, http://hsqldb.org/... Daniel Crawl
11:04 AM Bug #4362: component search performance
I have done some timing analysis of the new component search implementation.
There are 3 stages of the new component...
Aaron Aaron
05:06 PM Bug #4362: component search performance
I started to design the second option above this morning to figure out how difficult it would be to do. Turns out it... Aaron Aaron
06:31 PM Bug #4441: reporting fails to output figure
This problem also occurs on linux. Oliver Soong
05:48 PM Bug #4441 (Resolved): reporting fails to output figure
In the Bovine TB TPC workflow (tpc01-buffalo-tb.xml), I can't seem to get any figures to show in the reporting. The ... Oliver Soong
05:32 PM Bug #4440 (Resolved): null pointer exception on viewing report when workflow has not been run
If I create a workflow and a report, but do not execute the workflow, then try to view it in the viewer, I get a null... Oliver Soong

10/06/2009

03:57 PM Bug #4396: Add a drag icon to the report item panels
I think that the new and improved highlighting eliminates the need for this icon. Also added a cross hair cursor when... debi staggs
03:47 PM Bug #4349: clicking Cancel after Data search gives errors.
I'm unable to get this bug to occur anymore. I'm not sure what fixed it.
I've tried canceling during or after a sear...
Derik Barseghian
03:29 PM Bug #4403: Make it more obvious as to where to drag the report items to.
I have added a background image to the report designer panel that shows an image of a piece of paper, with a folded c... debi staggs
03:27 PM Bug #4399: Highlighting of panel should be more obvious
I have significantly enhanced the highlighting and selection, but am still in the process of improving it. debi staggs
03:25 PM Bug #4395: Change how we Delete Report Items.
The way that we delete report items has been changed so that the GUI now shows a small 'delete' button on the right h... debi staggs
03:18 PM Bug #4439 (Resolved): reporting displays output for a different actor
I can't upload any useful example, so I'll describe how to generate the problem.
1. In Workflow Editor, add 1 SDF ...
Oliver Soong
03:06 PM Bug #4438 (Resolved): View: label shouldn't appear when there's no view drop-down menu
In certain suites (e.g. workflow-run-manager) the "View:" label shows up even though the corresponding drop-down menu... Derik Barseghian
02:36 PM Bug #4434: Workflow Run Manager - add ability to hide/show columns
Spent some time on this, checked in code that's not called in r20892. It's not working yet and taking awhile to do, s... Derik Barseghian
02:19 PM Bug #4303: LSID Component Search
The full path is now properly returned in the results. Searching for KeplerLSIDs in the component library is fully o... Aaron Aaron
12:10 AM Bug #4303: LSID Component Search
This works now, however the tree path to the object is still not quite right. Close this bug after the full path is ... Aaron Aaron
12:26 PM Bug #3948: Create new configuration system supporting modules
Current configuration files in kepler:
Directory: common/configs/ptolemy/configs/kepler
authServicesBundle.propertie...
Chad Berkley
12:26 PM Bug #4436 (Resolved): composite actor output ports cannot be added to reports
If I have a composite actor with an output port, I cannot add that output port to the report design template. I can ... Oliver Soong
12:21 AM Bug #4362: component search performance
Sean and I discussed two possibilities for implementing fast component search today.
One was to use an SQL table tha...
Aaron Aaron

10/05/2009

12:01 PM Bug #4434 (New): Workflow Run Manager - add ability to hide/show columns
A user of the workflow run manager should be able to hide or show columns, preferably in the manner shown in this old... Derik Barseghian
11:55 AM Bug #3948: Create new configuration system supporting modules
Configuration System Requirements agreed upon on 2009.10.02:
1) A module is able to add configuration properties to ...
Chad Berkley
11:54 AM Bug #4394: Need to develop requirements for configuration subsystem
Since requirements are now decided, I will close this bug. All future posts on this subject should be made to bug 3948. Chad Berkley
11:53 AM Bug #4394: Need to develop requirements for configuration subsystem
After having a conference call about the requirements for the config system last friday, I think we are in agreement ... Chad Berkley
 

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