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From 03/01/2010 to 03/30/2010

03/31/2010

07:01 PM Bug #4800: CacheManager can not insert WorkflowRun into cache
Yes, the solution to use moml as the serialization format to cache instead of a java serialized object seems to be wo... Aaron Aaron
06:24 PM Bug #4800: CacheManager can not insert WorkflowRun into cache
I believe this is fixed. Aaron, do you consider this fixed with r23291? Derik Barseghian
06:52 PM Bug #4161: Develop kepler workflow execution engine
Hey Jing and/or Ben, could you give an update on this bug? Derik Barseghian
06:29 PM Bug #4897: Arrow key navigation of Workflow Run Manager can stop working
Changing to be an ER. Derik Barseghian
06:27 PM Bug #4230: problem associating errors with particular execution
Dan, any updates for this bug? Derik Barseghian
06:20 PM Bug #4895: Exporting multiple runs gives duplicate entry errors
This is still a bug. It may get fixed as a result of the changes I'm implementing to fix bug 4898. Derik Barseghian
06:15 PM Bug #4765: semantic annotation doesn't appear until you click on workflow
This is a minor bug, but annoying. Derik Barseghian
06:13 PM Bug #4663: Tag shows up in workflow moml when it shouldn't
This is no longer happening. Maybe it was related to the bug in getHighestRevision fixed today in r23525. Derik Barseghian
06:02 PM Bug #4672: Workflow title isn't refreshed during run export workflow rename
You're no longer prompted to rename an unnamed workflow during a run export. However, the following types of scenario... Derik Barseghian
05:51 PM Bug #4671: cannot export workflow runs when workflow has actors with <> in the names
This is a general Kepler issue. If we consider it a bug and not an enhancement request, it's a bug in 2.0 and trunk, ... Derik Barseghian
05:37 PM Bug #4361: Workflow Run Manager column "Workflow Name" can be confusing
Changing this to an enhancement request. This is a general Kepler issue.
Adding a filename column to the WRM could ...
Derik Barseghian

03/30/2010

03:24 PM Bug #4915: PortParameters instantiated from Outline tab cannot be deleted
No, same problem in both trunk and 2.0. Derik Barseghian
02:53 PM Bug #4915: PortParameters instantiated from Outline tab cannot be deleted
Please let me know if revision 23524 (in trunk)
and revision 23523 (in 2.0 branch) fix this problem.
Aaron Aaron
10:45 AM Bug #4915 (Resolved): PortParameters instantiated from Outline tab cannot be deleted
If you drag a PortParameter to canvas from the Outline tab, it can't then be deleted from canvas. Also, it doesn't se... Derik Barseghian
03:10 PM Bug #4916: Save Archive gives an error
I just started getting this as well. It results in an inability to instantiate composites returned from remote reposi... Sean Riddle
03:08 PM Bug #4916 (Resolved): Save Archive gives an error
File => Save Archive works on the 2.0 branch, but on trunk I'm getting an error (both in wrp and kepler suites):
p...
Derik Barseghian
02:09 PM Bug #4741: create icons for engineering view components
The icons must be a certain size so that lines between them are straight. For details see the thread started here (an... Daniel Crawl
01:32 PM Bug #4914: right-clicking on any item in Outline view gives exceptions
I've removed popups from the outline tab. closing. Aaron Aaron
10:39 AM Bug #4914 (Resolved): right-clicking on any item in Outline view gives exceptions
If you right click on any item in the Outline view, you get exceptions. This happens in 2.0 and trunk.
To replicat...
Derik Barseghian
11:31 PM Bug #4913: ant change-to -Dsuite=kepler-2.0 checks out ptolemy from the head not the rel-8-0-beta-2 branch
This is not a build system issue, but instead an issue of how the kepler-2.0 suite is specified.
I have changed modu...
David Welker
07:38 PM Bug #4913 (Resolved): ant change-to -Dsuite=kepler-2.0 checks out ptolemy from the head not the rel-8-0-beta-2 branch
How do I check out the 2.0 branch?
svn co https://code.kepler-project.org/code/kepler/branches/releases/release-br...
Christopher Brooks
05:37 PM Bug #4912 (Resolved): File => New Workflow => FSM Model and Modal Model don't work
Trying to open a new blank FSM Model or Modal Model from the Kepler File menu doesn't work in trunk (it does work in ... Derik Barseghian

03/29/2010

04:56 PM Bug #4911: org.kepler.gui.RunWithFeedbackChkBoxAction exception message.
Thanks to Derik's remind, this bug is duplicate of existing bug 4872. I'll close this one. jianwu jianwu
04:38 PM Bug #4911 (Resolved): org.kepler.gui.RunWithFeedbackChkBoxAction exception message.
Recently, there are always have the following messages in the console when using Kepler trunk or Kepler 2 branch.
...
jianwu jianwu
02:28 PM Bug #4910 (Resolved): Test module installation system
Test module installation system. debi staggs
02:15 PM Bug #4909 (New): Actor documentation: updates ignored, duplicate info, how to refer to other actors/models?
A few comments about the Kepler Actor Documentation system
1. If I update the .xml file for a Director, then pree...
Christopher Brooks
02:05 PM Bug #4908 (New): actor/director/attribute .xml file documentation needs to be updated
The kar files include documentation for actors, directors and attributes.
These files need to be checked against t...
Christopher Brooks
12:43 PM Bug #3071: KAR files should be sent along with workflow to slaves
In the new KAR specification of the coming Kepler 2.0, KAR files can not include actor classes and jars. So parsing ... jianwu jianwu

03/25/2010

03:39 PM Bug #3694: Sharing installation among users fails, users must have write permission
I closed to soon, it looks like the non-admin has no actors listed in the palette.
Should this be fixed for 2.0?
Christopher Brooks
03:15 PM Bug #3694: Sharing installation among users fails, users must have write permission
This is fixed.
I installed Kepler-2.0-rc1 on a Windows 2003 Server as Administrator.
I can start up Kepler as a non-...
Christopher Brooks
11:09 AM Bug #4244: Dragging ImageAttribute into Kepler results in not finding the gif
Closing.
The problem was that dragging certain actors would fail because
resources associated with the actor were not...
Christopher Brooks
06:54 PM Bug #4281: ant update produces message about running svn cleanup
It looks like ant update fails under Windows 2003 in a clean tree.
The error is:
[update-modules] At revision 57481...
Christopher Brooks
06:30 PM Bug #3801: open dialog, common places pane has white box instead of text
I'm reviewing old bugs.
This bug is still present in the devel tree.
The problems is that under Windows 2003, anyth...
Christopher Brooks

03/24/2010

04:57 PM Bug #4804: copy/paste relation changes width from Auto to 1
Fixed!
The problem was that the RelationWidthChanges filter would set the width to 1
instead of the width remaining A...
Christopher Brooks
04:21 PM Bug #4669: report layout changes, but text field displays previous content
This was just getting the text from the wrong place. Fixed now. debi staggs
01:24 PM Bug #4898: WorkflowRun entityId lsid no longer incrementing after getting tagged
I'm going to look at this.
On a related note, I've discussed making changes to the system so that provenance's workfl...
Derik Barseghian
12:30 PM Bug #4903 (Resolved): Text in attributes not rendered properly
In a version of Kepler checked out from the svn tree, I did:
Tools->Instantiate Attribute
and entered
ptolem...
Christopher Brooks
11:15 AM Bug #4689: Export run creates duplicate WorkflowRun files. Exporting it again gives none.
Fixed this in r23422. Derik Barseghian
05:46 PM Bug #4899: Installer Bugs
Done except for:
9) create exe for windows installer
Derik Barseghian

03/23/2010

04:21 PM Bug #4899: Installer Bugs
Done except for:
9) create exe for windows installer
13) look into non-versioned dirs in KeplerData (derik)
Chad Berkley
02:40 PM Bug #4899: Installer Bugs
Remaining to be fixed:
9) create exe for windows installer
13) look into non-versioned dirs in KeplerData
15) upda...
Chad Berkley
02:31 PM Bug #4899: Installer Bugs
#15) The Welcome screen has
Kepler 1.x Developer

A collaborative environment for creating and executing scientific ...
Christopher Brooks
02:23 PM Bug #4899: Installer Bugs
(In reply to comment #2)
> #13 fixed in r23452 for 2.0 and in r23454 for trunk
Arg, typo. #14 fixed, not #13.
Derik Barseghian
02:22 PM Bug #4899: Installer Bugs
#13 fixed in r23452 for 2.0 and in r23454 for trunk Derik Barseghian
10:12 AM Bug #4899: Installer Bugs
1) "Please read the following information" screen
"Kepler is based on Ptolemy II version 7.0.2"
change...
Chad Berkley
10:07 AM Bug #4899 (Resolved): Installer Bugs
Tracking bug for 2.0 installer issues. Chad Berkley
04:11 PM Bug #4894: One slave doesn't respond correctly when having concurrent requests.
It is fixed at version 23459. SlaveController use a hashmap to contain the slave objects for different masters. jianwu jianwu
01:03 PM Bug #4867: Update screenshots for the documentation
Chapter 11 is still going to need to be reviewed and updated by Aaron. debi staggs
10:03 AM Bug #4867: Update screenshots for the documentation
Debi says all screenshots have been updated. David will update the two remaining ones after RC1. Closing this bug. Chad Berkley
12:46 PM Bug #4885: Right-clicking on KARs in the component pane produces exception
This works fine now on local kars, closing. Aaron Aaron
11:27 AM Bug #4072: Rework Section 3
debi did the screenshots in r1194.
i've accepted all changes and closed all comments, and 3.0 is done in r1212.
Derik Barseghian

03/22/2010

01:38 PM Bug #3976: Update Documentation for 2.0 release
The three screenshots in Chapter 12 will have to be re-done once we have published. It should only take a few minutes... David Welker
01:31 PM Bug #3976: Update Documentation for 2.0 release
All the screen shots have been updated and links checked. So, I think everything in the documentation is ready to go... debi staggs
11:06 AM Bug #4753: create gui for scheduled execution of sensor workflows on server
This would be useful for any type of workflow, not just for the Engineering View. Daniel Crawl

03/20/2010

05:51 PM Bug #4898: WorkflowRun entityId lsid no longer incrementing after getting tagged
Also of note, if you restart Kepler and then use the View Run LSID context menu on such a tagged run, the derivedLSID... Derik Barseghian
05:40 PM Bug #4898 (Resolved): WorkflowRun entityId lsid no longer incrementing after getting tagged
Looks like after the refactor the WorkflowRun entityId lsid revision no longer gets bumped when a run gets tagged.
...
Derik Barseghian
05:13 PM Bug #4897 (New): Arrow key navigation of Workflow Run Manager can stop working
When using the keyboard's arrow keys to move up or down the list of runs in the WRM on the Report Designer tab, when ... Derik Barseghian
05:08 PM Bug #4896 (Resolved): When exporting multiple runs only 1 ROML is placed in KAR
If you export multiples runs that have different report designs and instances from the Workflow Run Manager, you only... Derik Barseghian

03/19/2010

04:10 PM Bug #4895 (Resolved): Exporting multiple runs gives duplicate entry errors
Exporting multiple runs from the Workflow Run Manager gui sometimes gives a series of duplicate entry error messages ... Derik Barseghian
03:05 PM Bug #4517: Verify that the search capabilities work
Aaron clarify the issue:
on the search result panel, right clicking the kar entry will bring a menu. One menu item i...
Jing Tao
01:19 PM Bug #4517: Verify that the search capabilities work
It's probably Kepler keeping you from running a workflow without a top-level directory. Put a PN or SDF directory in ... Sean Riddle
12:21 PM Bug #4517: Verify that the search capabilities work
In this case, the kar file only has a composite actor at the result panel. Actually, I saved a workflow to the kar fi... Jing Tao
11:53 AM Bug #4517: Verify that the search capabilities work
You should be able to drag the contents of the kar file. If the kar file doesn't have anything in it, then there is ... Chad Berkley
11:37 AM Bug #4517: Verify that the search capabilities work
Chad:
What can we do to the kar search result? How can we open it?
Thanks,
Jing
Jing Tao
11:26 AM Bug #4517: Verify that the search capabilities work
I don't think you're supposed to be able to drag the kar to the canvas. It's just a container. Chad Berkley
11:25 AM Bug #4517: Verify that the search capabilities work
I saved a workflow into local repository as a kar file. The search it on the components panel. The result shows:
Wor...
Jing Tao
01:45 PM Bug #4894 (Resolved): One slave doesn't respond correctly when having concurrent requests.
When two running workflow are requesting concurrently to one slave, the executions will be twisted. Usually only one ... jianwu jianwu
01:28 PM Bug #4462: Component search in remote repositories not working
Personally, Aaron, I agree with you. I'll look into reorganizing the tree. Ben, Chad or others, let me know if you ar... Sean Riddle
01:21 PM Bug #4462: Component search in remote repositories not working
Sorry I wasn't following that thread... My input would be that if the search results are going to be displayed in th... Aaron Aaron
01:17 PM Bug #4462: Component search in remote repositories not working
I sent out an email about this a week ago. Ben and Chad thought this (semantic types under a KAR file) would be clear... Sean Riddle
12:03 PM Bug #4462: Component search in remote repositories not working
Also Sean, I don't think it makes sense to have the ontology hierarchy inside of the KAR search results. Can you ret... Aaron Aaron
11:59 AM Bug #4462: Component search in remote repositories not working
ummmm, the filename gets lost in metacat somewhere? You should just display the filename of the KAR file in the sear... Aaron Aaron
11:30 AM Bug #4462: Component search in remote repositories not working
Yes, I'm aware of that odd naming convention. The problem is, the KARs themselves don't have any other name on the re... Sean Riddle
11:27 AM Bug #4462: Component search in remote repositories not working
sean:
After searching the remote repository, the search result shows the docid, such as 8128:69:1 rather than the ka...
Jing Tao
12:01 PM Bug #4869: changes made to workflows during dialogs before committing (Edit Parameters/Cancel)
Moving this bug to 2.x. It is not realistic to fix this for 2.0. Chad Berkley
10:42 AM Bug #4759: install dataturbine on gumstix
Done. Instructions can be found here:
https://kepler-project.org/developers/incubation/kepler-engineering-view-for-r...
Daniel Crawl

03/18/2010

04:21 PM Bug #4888: Runs with 1 error don't highlight red in WRM
Did a couple quick tests and it works here, thanks. Nothing to check into the branch since r23398 is just changes to ... Derik Barseghian
03:47 PM Bug #4888: Runs with 1 error don't highlight red in WRM
I think it's better now after revision 23398 in trunk, let me know if that works and I'll check it into the branch as... Aaron Aaron
01:13 PM Bug #4888: Runs with 1 error don't highlight red in WRM
When is setErrorMessages() called after a run? Looks like the WRM is refreshed with WorkflowRun objects constructed ... Aaron Aaron
12:51 PM Bug #4888: Runs with 1 error don't highlight red in WRM
Sure. Open a blank worflow and hit run. This will cause one error, yet the run row won't be highlighted red. Derik Barseghian
12:46 PM Bug #4888: Runs with 1 error don't highlight red in WRM
Can you describe how to reproduce the bug. Aaron Aaron
01:58 PM Bug #3073: Heartbeat function for slaves
Either EcoGrid registry or Master should check the heartbeats from slaves. But the services at EcoGrid are to respond... jianwu jianwu
01:46 PM Bug #4893: WRP Kepler Frame vertically fills entire screen
I will take a look at this one. debi staggs
12:56 PM Bug #4893 (Resolved): WRP Kepler Frame vertically fills entire screen
On Windows XP with a screen resolution of 1600x1200 pixels, a new Kepler Frame (in WRP suite) stretches all the way f... Aaron Aaron

03/17/2010

04:00 PM Bug #4888 (Resolved): Runs with 1 error don't highlight red in WRM
Looks like the code for dealing with errors is a little broken after the recent refactor of WorkflowRun: Runs with 1 ... Derik Barseghian
03:31 PM Bug #3070: Need access control GUI for slaves
It is fixed at version 23388. With user access dialog, user access rule can be dynamically configured from GUI. jianwu jianwu
03:15 PM Bug #4887 (New): If a module is added to a configuration, the error message should include the fix
Apparently, the dataturbine module was added to the kepler trunk.
After doing
ant update
ant run
I got:
run:...
Christopher Brooks
10:59 AM Bug #4884: Trying to log into IPCC anonymously causes Kepler to freeze, and require a force quit.
I just tried this under various circumstances and was not able to get it to crash. I'm going to close this for now, ... Chad Berkley

03/16/2010

04:31 PM Bug #4884: Trying to log into IPCC anonymously causes Kepler to freeze, and require a force quit.
Could have been because I did have several workflows open ? I just tried it now, and was successful. Maybe we can c... debi staggs
12:56 PM Bug #4884: Trying to log into IPCC anonymously causes Kepler to freeze, and require a force quit.
Just tried this in the 2.0 branch and it worked for me. Debi, were there any other circumstances that could have con... Chad Berkley
12:15 PM Bug #4884: Trying to log into IPCC anonymously causes Kepler to freeze, and require a force quit.
On wrp trunk on mac 10.5 with kepler launched from eclipse with VM arg: -Xmx1500m, I have all datasources selected ex... Derik Barseghian
12:06 PM Bug #4884: Trying to log into IPCC anonymously causes Kepler to freeze, and require a force quit.
I just tried to search "IPCC" on data tab (logged in anonymously), it worked fine to me. Can someone else make a try? Jing Tao
11:51 AM Bug #4884 (Resolved): Trying to log into IPCC anonymously causes Kepler to freeze, and require a force quit.
If you do a search from the data tab for 'IPCC' and then try to log in anonymously, it looks like it is trying to con... debi staggs
04:16 PM Bug #4761: install and configure SPAN software on gumstix
Derik and I visited the SPAN group on March 8; they installed their software on our gumstix. Using CRBasic programs w... Daniel Crawl
02:35 PM Bug #4885 (Resolved): Right-clicking on KARs in the component pane produces exception
This bug is there as of r23368.
Stacktrace follows:
[run] java.lang.Exception: LIID not found for CoreAct...
Sean Riddle
01:54 PM Bug #3069: start slave from gui
It is fixed at Kepler trunk version 23363. Slave will be started when using startSlave or startSlaveAsyn commands or ... jianwu jianwu
01:52 PM Bug #3068: rmiregistry should be started programmatically
It is fixed at Kepler trunk version 23363. rmi registry will be done automatically when using startSlave or startSlav... jianwu jianwu
12:52 PM Bug #4864: Update paths in demo workflows
All demo workflows have been updated. There is now a system property DEMODIR that can be used in workflows to get th... Chad Berkley

03/15/2010

04:28 PM Bug #4517: Verify that the search capabilities work
The debug message has gone when I tried to reproduced the issue on comment 3. I tried both kepler 2.0 and trunk. Ben ... Jing Tao
03:34 PM Bug #4883: Need more command line options for kar files
created a stopgap soln in r23358 -- for headless for runs of kars, now writing resultant "run-kar" into KeplerData/wo... Derik Barseghian
01:51 PM Bug #4883 (New): Need more command line options for kar files
right now, we can execute a single workflow contained in a kar file with the -runwf command line switch. It would be... Chad Berkley
03:32 PM Bug #4744: load & save site layout to local kar file
additional items to save in KAR: CRBasic program, SPAN config files Daniel Crawl
03:29 PM Bug #4743: create gui to edit documentation metadata for component
It would be good to review the interfaces on the following web page when designing this interface:
https://kepler-pr...
Daniel Crawl
01:07 PM Bug #4745: load & save site layout to metacat
save to metacat instead of dataturbine? Derik Barseghian

03/14/2010

04:34 PM Bug #4832: python actor outputting to disconnected composite output throws error
This might be a bug in provenance. I'll take a look. Daniel Crawl

03/13/2010

08:09 AM Bug #4832: python actor outputting to disconnected composite output throws error
I took a look at this and confirmed that it is not a problem in Ptolemy or Kepler, but is reproducible in after doing... Christopher Brooks

03/12/2010

03:20 PM Bug #4877: The provenance recorder and tagging buttons on the toolbar need tooltips
Fixed in r23341. Sean Riddle
04:18 PM Bug #4877 (Resolved): The provenance recorder and tagging buttons on the toolbar need tooltips
The provenance recorder and tagging buttons, that are only present in certain suites, need tooltips like the other UI... Sean Riddle
03:13 PM Bug #4773: Data processing on the GPP
Also, part of the SPAN stack can do processing / QA/QC. To what extent do we want to utilize this? I currently consid... Derik Barseghian
02:01 PM Bug #4333: KeplerLSID AuthNamespace web service
(In reply to comment #5)
> Alright https://kepler-project.org/ns/
> now works.
>
> http://library.kepler-project.or...
Shaun Walbridge
12:51 PM Bug #4333: KeplerLSID AuthNamespace web service
Alright https://kepler-project.org/ns/
now works.
http://library.kepler-project.org/ns/
is still returning an error...
Aaron Aaron
05:16 PM Bug #4333: KeplerLSID AuthNamespace web service
I've added
https://kepler-project.org/ns/
and
http://library.kepler-project.org/ns/
to the Kepler configuration in...
Aaron Aaron
04:31 PM Bug #4333: KeplerLSID AuthNamespace web service
Added the namespace number generator jsp to the kepler skin in metacat at:
/style/skins/kepler/keplerAuthNamespac...
Michael Daigle
01:57 PM Bug #4847: Instantiating new actor from library gives error after restart
Unable to reproduce this bug in the 2.0 branch and my Mac. Please reopen if you're still seeing it. Aaron Aaron
01:41 PM Bug #4072: Rework Section 3
only thing left now is updating the screenshots. Derik Barseghian
01:40 PM Bug #4852: Documentation => Remove Customization doesn't work
fixed in r23336 (trunk) and r23339 (2.0). Derik Barseghian
06:38 PM Bug #4852: Documentation => Remove Customization doesn't work
I've got a local fix for this that seems to be working pretty well. I'm going to test it some more before check in. Derik Barseghian
11:01 AM Bug #4872: listen to director throws error
Oh, and it doesn't seem to cause any serious problems. Oliver Soong
11:00 AM Bug #4872: listen to director throws error
I'm also seeing something like this when I run, sometimes. I get:
java.lang.reflect.InvocationTargetException
...
Oliver Soong
10:53 AM Bug #4881 (New): RExpression outputs [false] for any matrix of booleans
In an RExpression, add an output port "out" and use this R script:
out <- matrix(c(TRUE, FALSE, TRUE, FALSE), 2)
...
Oliver Soong
10:45 AM Bug #4880 (New): RExpression cannot output matrix of strings
Create an RExpression with the output port "out" and for the script, use:
out <- matrix(letters, 2)
Looking at...
Oliver Soong
10:37 AM Bug #4879 (New): RExpression replaces ) in string vectors with } when outputting to a port
In an RExpression, create the output port "out" and in the R script, use:
out <- c("(", ")")
Hooking this to a...
Oliver Soong
04:37 PM Bug #4848: only first change to Customize Documentation shown in Documentation=>Display
Thanks Christopher. I updated kepler trunk to use ptolemy r57481 and made the required change to uiContextMenuMapping... Derik Barseghian
04:29 PM Bug #4076: Rework Section 7
With the Jargon.jar in Kepler, it can communicate with different SRB version. Since SRB has not been updated for two ... jianwu jianwu
04:25 PM Bug #4076: Rework Section 7
update section 7 to explain more about SRB actors, which are still working when the host and resource server are runn... jianwu jianwu

03/11/2010

03:57 PM Bug #4848: only first change to Customize Documentation shown in Documentation=>Display
This bug:
Get Documentation on actor ports can give an NPE
https://chess.eecs.berkeley.edu/bugzilla/show_bug.cgi?i...
Christopher Brooks
03:27 PM Bug #4333: KeplerLSID AuthNamespace web service
So
kepler-project.org
is the plone site, and metacat is on
library.kepler-project.org
If we drop the jsp page into t...
Aaron Aaron
03:25 PM Bug #4876 (New): RExpression - recursively handle arrays
Currently you can only have a list of lists - it would be nice to handle the Token->R->Token conversion recursively s... ben leinfelder
03:14 PM Bug #4864: Update paths in demo workflows
The installer now places the demos in ~/KeplerData/Kepler-2.0.0/demos. Paths should be updated to reflect that locat... Chad Berkley
01:48 PM Bug #4869: changes made to workflows during dialogs before committing (Edit Parameters/Cancel)
Edward and I talked about this and he reminded me that changes are actually
committed as you move between fields. I...
Christopher Brooks
11:39 AM Bug #4869: changes made to workflows during dialogs before committing (Edit Parameters/Cancel)
> This happens when you just run Vergil:
> -drag a StringConst actor to the stage
> -edit the actor params
> -type so...
Christopher Brooks
10:22 AM Bug #4869: changes made to workflows during dialogs before committing (Edit Parameters/Cancel)
Christopher,
The _handleClosing() method in ptolemy.actor.gui.EditParametersDialog
does not restore the values of ...
ben leinfelder
10:08 AM Bug #4869: changes made to workflows during dialogs before committing (Edit Parameters/Cancel)
It looks like there is some oddness in Vergil with edit parameters.
I'll see about taking a look.
Christopher Brooks
06:16 PM Bug #4869: changes made to workflows during dialogs before committing (Edit Parameters/Cancel)
This happens when you just run Vergil:
-drag a StringConst actor to the stage
-edit the actor params
-type some value...
ben leinfelder
04:16 PM Bug #4869: changes made to workflows during dialogs before committing (Edit Parameters/Cancel)
You can get into trouble if you Edit the actor parameters then press other buttons (other than Cancel and Commit):
-H...
ben leinfelder
01:21 PM Bug #4873: Actors in repository library subtree are crammed together
Roger that, works well, closing. Aaron Aaron
10:32 AM Bug #4873: Actors in repository library subtree are crammed together
You probably know this, but you can use System.getProperty("os.name"); to fine the current OS for switching stuff lik... Chad Berkley
04:55 PM Bug #4873: Actors in repository library subtree are crammed together
I've added 2 pixels to the rowHeight of the AnnotatedPTree class. Now it would be nice to toggle this based on OS... Aaron Aaron

03/10/2010

03:23 PM Bug #4874 (Resolved): Modify existing KARFile schema for use with KAR File Parser
Currently, we have a simple KARFile schema, but it needs to be modified so that it can be used with the KAR File Pars... debi staggs
02:41 PM Bug #4869: changes made to workflows during dialogs before committing (Edit Parameters/Cancel)
from conf. call:
-verify that "cancel" does work for all normal cases
-isolate the sequence that caused the changes t...
ben leinfelder
09:59 AM Bug #4869: changes made to workflows during dialogs before committing (Edit Parameters/Cancel)
It's that attributeChanged() method - I know the EML actor does a lot of things in that method, and I remember it bei... ben leinfelder
02:24 PM Bug #4517: Verify that the search capabilities work
Need to look at the print out on the console when we search and download data on ecogrid. Jing Tao
02:00 PM Bug #4072: Rework Section 3
in r1179 - finished going through all of this section, fixed some typos, figure numbers and so forth. All that's left... Derik Barseghian
01:53 PM Bug #4684: Release tracking bug
Closing this bug because the current 2.0 targeted bugs are the release bugs. Chad Berkley
01:51 PM Bug #4070: Rework Section 1 and the GSG
Chapter 1 and the GSG are now updated. Chad Berkley
05:47 PM Bug #4070: Rework Section 1 and the GSG
I updated the future goals section, corrected the contributors list, and made additional edits throughout. Chad -- I... Matt Jones
01:04 PM Bug #4868: Update R paths in documentation and demos
Just noticed that the GSG also uses workflows with RExpression actors (00-StatisticalSummary and 05-LinearRegression)... ben leinfelder
11:19 AM Bug #4872: listen to director throws error
This also happens when you use these context menus:
Open Actor
Documentation => Display
Listen to Actor
I'm also n...
Derik Barseghian
04:17 AM Bug #4858: Open Actor on non-composite actors no longer works
Fixed. The problem was actually occurring at both the trunk and the 2.0 branch on a fresh checkout. Which makes sense. David Welker
07:59 PM Bug #4858: Open Actor on non-composite actors no longer works
Christopher's comment#9 works for me (beneath, and adjusting for, the trunk with the wrp suite, at least). However if... Derik Barseghian
04:26 PM Bug #4681: Check all file properties before release
Yep, svn:keywords and svn:style for all files:
bash-3.2$ svn proplist README.txt
Properties on 'README.txt':
svn:ke...
Christopher Brooks
04:13 PM Bug #4681: Check all file properties before release
Which properties should we set? I propose keywords and eol-style as Derik said. Are there any others? I can write ... Chad Berkley
04:10 PM Bug #4803: Review the README file
Contributor list has been updated. All info in the README is now up to date. Version numbers need to be updated on ... Chad Berkley
04:08 PM Bug #4685: Create installers
Win/OSX/Lin Installers are now working and revised for the 2.0 release. Just version numbers (beta/rc/etc) need to b... Chad Berkley
04:05 PM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)
Pushing this to post 2.0 since I think it affects a small number of users. I don't think this should hold up the 2.0... Chad Berkley

03/09/2010

03:53 PM Bug #4873 (Resolved): Actors in repository library subtree are crammed together
On Windows XP (maybe on other versions of windows) the actor icons are crammed tightly together when you open up Acto... Chad Berkley

03/08/2010

03:19 PM Bug #4864: Update paths in demo workflows
I updated $Kepler\outreach-2.0\resources\demos\getting-started\03-ImageDisplay.xml to fit the new directory name for ... jianwu jianwu
01:10 PM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)
Yes. But for the moment it has to take second place to meeting our own rather extreme schedule commitments. I think... Tom Parris
12:42 PM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)
Sounds good. Thanks, Tom. Would you consider creating a new GDAL module for kepler? If so, we would be willing to ... Chad Berkley
11:36 AM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)
OK. We're in the process of building the new suite of java language bindings now. We've gotten them to compile on a... Tom Parris
11:20 AM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)
Hi Tom, The instructions for building gdal in windows are here:
http://trac.osgeo.org/gdal/wiki/GdalOgrInJavaBuildIns...
Chad Berkley
05:45 AM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)
Apologies for the delay. I've been travelling.
We obviously have the requisite hardware and can compile the GDAL C ...
Tom Parris
11:22 AM Bug #4070: Rework Section 1 and the GSG
This bug can be closed once Matt has edited the future goals section of chapter 1. Chad Berkley

03/05/2010

02:19 PM Bug #4872: listen to director throws error
I believe this is more general; I've seen this error periodically lately when using other context menus. Derik Barseghian
02:14 PM Bug #4872 (Resolved): listen to director throws error
Add an SDF Director and the Tools->Listen to Director. An error pops up on the console:
Error creating action fo...
Oliver Soong
12:29 PM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)
GDAL requires Microsoft Visual C++ to compile:
http://trac.osgeo.org/gdal/wiki/GdalOgrInJavaBuildInstructions
I don...
Chad Berkley
09:37 PM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)
I created a universal binary that supports 32 and 64 bit JVMs under MacOSX.
The library may be found in ptII/lib/matl...
Christopher Brooks
11:25 AM Bug #4070: Rework Section 1 and the GSG
Getting Started Guide is complete. Chad Berkley
11:13 AM Bug #4070: Rework Section 1 and the GSG
I checked out chapter 1. We need to update section 1.4 with new future goals of kepler. I've asked Matt if he might... Chad Berkley
08:00 AM Bug #4070: Rework Section 1 and the GSG
I think we can close this bug, but Chad can you look it over before I do ?
Thanks.
debi staggs
04:44 PM Bug #4802: KARs in KeplerData/workflows are being parsed on startup
commented out that bit of code - i believe it is redundant since it is also called in the open() method.
we should ke...
ben leinfelder

03/04/2010

02:23 PM Bug #4870 (New): searching for packages with the same name from multiple sources sometimes loses results
I have packages soong.4.14 and soong.28.5 on DEV and soong.4.15 and soong.28.9 on KNB. They all have the same title.... Oliver Soong
11:59 AM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)
The Ptolemy Matlab interface has similar problems, I'm looking at building 64bit
libraries for the Mac. On the Mac,...
Christopher Brooks
09:34 AM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)
>1) Check all native library actors and recompile as needed for the following
>platforms, and recompile/install as ne...
Chad Berkley
11:27 AM Bug #4858: Open Actor on non-composite actors no longer works
Sorry to be a Reopener, but this is still happening for me. I had Ben try it out, and it happens to him too. From Chr... Derik Barseghian
04:14 PM Bug #4858: Open Actor on non-composite actors no longer works
(In reply to comment #13)
> This happened for me today too, as I was going through testing the examples in
> the Docu...
debi staggs
11:04 AM Bug #4869 (In Progress): changes made to workflows during dialogs before committing (Edit Parameters/Cancel)
When I make changes to an actor through the dialog, it seems like the changes are made to the workflow immediately, b... Oliver Soong
09:51 AM Bug #4078: Rework Section 9
Updated by madhu. Chad Berkley
09:21 AM Bug #4852: Documentation => Remove Customization doesn't work
It did work at one point. It just removed the kepler documentation and let it default to the ptolemy docs. If there... Chad Berkley
05:52 PM Bug #4852: Documentation => Remove Customization doesn't work
I wonder if this ever worked in Kepler? It doesn't in 1.0. I'm having trouble finding where/how the documentation may... Derik Barseghian
09:19 AM Bug #4811: No "Get Metadata" item on right-click menu after dragging an EML actor to the canvas
The action handler that supports figuring out which object has been clicked on seems to have been broken so in the in... Chad Berkley
06:03 PM Bug #4811: No "Get Metadata" item on right-click menu after dragging an EML actor to the canvas
Hey Chad, is the Get Metadata context menu item supposed to be available for all actors? It looks like in 1.0 it was ... Derik Barseghian
09:13 AM Bug #4077: Rework Section 8
Added a new bug for updating the paths in the demos and docs. Closing this one. Chad Berkley
04:06 PM Bug #4077: Rework Section 8
only a couple minor things.
we do need to be aware of the act that the R examples are located in a the r module, not ...
ben leinfelder
09:11 AM Bug #4868 (Resolved): Update R paths in documentation and demos
The demos path to the R demos should point to the R demos directory, not the outreach demos directory. Make sure thi... Chad Berkley
09:09 AM Bug #4081: Rework Appendix B
Ok, thanks, Debi. The only thing left to do on this is update screenshots then. I've made a separate bug (bug 4867)... Chad Berkley
04:12 PM Bug #4081: Rework Appendix B
(In reply to comment #5)
> (In reply to comment #4)
> > Originally, I had wanted to keep all of the screen shots cons...
debi staggs
04:09 PM Bug #4081: Rework Appendix B
(In reply to comment #4)
> Originally, I had wanted to keep all of the screen shots consistent, however,
> it's going...
debi staggs
09:07 AM Bug #4867 (Resolved): Update screenshots for the documentation
Any screen shots that are out of date should be retaken and updated in the documentation. Chad Berkley
11:54 PM Bug #4082: New user guide section on modules/module manager
Made a new chapter (12) in the User Manual for modules. It is short and oriented towards users rather than developers... David Welker
11:47 PM Bug #4071: Rework Section 2
Will do this documentation update when we get installers created. David Welker
05:40 PM Bug #4848: only first change to Customize Documentation shown in Documentation=>Display
fixed also for Directors in r23268 (trunk) and r23269 (2.0) Derik Barseghian
04:29 PM Bug #4802: KARs in KeplerData/workflows are being parsed on startup
is that a "yes"? ben leinfelder
04:21 PM Bug #4797: Verify that multiple workflow/actor KARs work as expected
actor and director kars have been combined in head, closing this bug. Aaron Aaron

03/03/2010

03:45 PM Bug #4858: Open Actor on non-composite actors no longer works
This happened for me today too, as I was going through testing the examples in the Documentation. debi staggs
03:42 PM Bug #4081: Rework Appendix B
Originally, I had wanted to keep all of the screen shots consistent, however, it's going to take a lot of work to do ... Chad Berkley
03:16 PM Bug #4081: Rework Appendix B
Reviewed the R appendix - some minor typos corrected, but no glaring omissions re: functionality. I was concerned abo... ben leinfelder
11:37 AM Bug #4081: Rework Appendix B
updated links to NCEAS R reference material. Links are as follows (thanks, Rick).
http://www.nceas.ucsb.edu/scicom...
Chad Berkley
10:50 AM Bug #4081: Rework Appendix B
Updated links, proof-read. Need NCEAS links to work. Sent email to shaun and rick asking about missing pdfs.
http:...
Chad Berkley
03:41 PM Bug #4074: Rework Section 5
Done updating section 5. Chad Berkley
01:24 PM Bug #4852: Documentation => Remove Customization doesn't work
This is kepler-specific, it works in vergil. Derik Barseghian
01:13 PM Bug #4865: Second time running a workflow by command line faild
Working now for Jing and I, closing. Derik Barseghian
01:08 PM Bug #4865: Second time running a workflow by command line faild
This was the problem Ben fixed the other day, but began recurring again probably because of my changes in r23263, but... Derik Barseghian
12:28 PM Bug #4865: Second time running a workflow by command line faild
I ran into this also. I think the LSID is getting put in the cache, then when you try to run the WF from the kar file... Chad Berkley
12:24 PM Bug #4865 (Resolved): Second time running a workflow by command line faild
I use the following command to run a workflow:
java -classpath build-area/lib/ant.jar:kepler.jar org.kepler.build.ru...
Jing Tao
01:12 PM Bug #4860: GUI-free class for Workflow Run Export
Works now for Jing and I at r23265, closing. Derik Barseghian
12:49 PM Bug #3976: Update Documentation for 2.0 release
Chapter One of the user's guide links and screen shots have been updated. Asking Chad to review section 1.4 Future G... debi staggs
12:22 PM Bug #4864 (Resolved): Update paths in demo workflows
After RC1 is cut, update all file paths in the demo workflows to use the module-X.0 format. Chad Berkley
11:16 AM Bug #4076: Rework Section 7
The documentation is almost done. Several small issued to be discussed with Ilkay. jianwu jianwu
11:06 AM Bug #4077: Rework Section 8
updated all links. reviewed and revised content. asking ben to make sure we're not missing anything with the additi... Chad Berkley
10:36 AM Bug #4078: Rework Section 9
Updated all links and proof-read. Sent an email to Ilkay asking her to review the content as I don't know enough abo... Chad Berkley
10:22 AM Bug #4078: Rework Section 9
I'll take this one. Chad Berkley
10:21 AM Bug #4079: Rework Section 10
done. Chad Berkley

03/02/2010

02:32 PM Bug #4858: Open Actor on non-composite actors no longer works
I did:
mkdir kepler-2.0
cd kepler-2.0
svn co https://code.kepler-project.org/code/kepler/branches/releases/release-...
Christopher Brooks
11:22 AM Bug #4858: Open Actor on non-composite actors no longer works
Christopher,
your fix does not work for me. Is there something else you did? The ptolemy-8.0/src directory is alr...
Chad Berkley
10:51 AM Bug #4858: Open Actor on non-composite actors no longer works
Hmm, the .classpath file does include the ptolemy src directory in the classpath. I'm currently looking into why thi... Chad Berkley
06:09 PM Bug #4858: Open Actor on non-composite actors no longer works
I can reproduce this under Kepler trunk with Eclipse.
The workaround is to add ptolemy/src to the classpath.
How I ...
Christopher Brooks
05:39 PM Bug #4858: Open Actor on non-composite actors no longer works
Also happens to me from trunk from within eclipse. Maybe another eclipse user can see if it happens to them too... Derik Barseghian
05:06 PM Bug #4858: Open Actor on non-composite actors no longer works
Hmm, reopening. So even with the ptolemy revision confusion aside, on a fresh checkout of the branch, this error does... Derik Barseghian
02:30 PM Bug #4851: KarEntryAttributes not saved in MANIFEST.MF/KarXML
fixed Aaron Aaron
01:31 PM Bug #4845: KAR dependencies not properly supporting module versions
Seems to be OK now. Aaron Aaron
09:54 AM Bug #4860 (Resolved): GUI-free class for Workflow Run Export
I'm trying to get the command-line execution working where I run a KAR and it produces a run KAR with the workflow/la... ben leinfelder
08:26 AM Bug #4859: GDALTranslate does not work on Windows 7 (64bit)
GDAL probably just needs to be recompiled for this architecture, and the installer adapted to detect which architectu... Matt Jones
07:41 AM Bug #4859 (In Progress): GDALTranslate does not work on Windows 7 (64bit)
GDALJniGlue fails to intialize on Windows 64bit operating systems.
ptolemy.kernel.util.IllegalActionException: i...
Tom Parris
07:31 AM Bug #3205: gdalTranslate actor crashes on bad format and won't work with all gdal formats
We're having a similar problem on the 2.0.0 trunk. This is a trivial workflow that attempts to convert an ERDAS IMG ... Tom Parris
09:59 PM Bug #4826: intermittent exceptions displaying matrix tokens
Fixed.
The problem was that actor.gui.MatrixPane has a public variable JTable table.
This variable should only be use...
Christopher Brooks

03/01/2010

03:08 PM Bug #4858: Open Actor on non-composite actors no longer works
Thanks guys. I wasn't seeing a bunch of ptolemy updates from within eclipse. I've updated with ant update, and it's w... Derik Barseghian
02:54 PM Bug #4858: Open Actor on non-composite actors no longer works
Oh, I should also note that I updated the context menu configuration last week to match up with some new ptolemy menu... Chad Berkley
02:50 PM Bug #4858: Open Actor on non-composite actors no longer works
I just tried this with the 2.0 branch and it worked for me. Have you tried a fresh checkout, derik? Also, are you u... Chad Berkley
02:36 PM Bug #4858: Open Actor on non-composite actors no longer works
Hey Christopher,
Thanks, it works for me on trunk too, I should've tried that and also specified: this is currently a...
Derik Barseghian
02:34 PM Bug #4858: Open Actor on non-composite actors no longer works
[Sorry, committed before being done].
I can't reproduce this. I'm running the Kepler devel tree
from the ptII head....
Christopher Brooks
02:22 PM Bug #4858: Open Actor on non-composite actors no longer works
Hmm, this works for me in the Kepler devel tree and the Ptolemy tree.
I'm running from the
Christopher Brooks
01:44 PM Bug #4858 (Resolved): Open Actor on non-composite actors no longer works
Drag a Display to canvas, right-click Open Actor and you'll get an Error popup:
Cannot find a tableau or the source ...
Derik Barseghian
02:01 PM Bug #4826: intermittent exceptions displaying matrix tokens
This bug does not seem to affect functionality, so I'm moving it to 2.x.y Christopher Brooks
11:57 AM Bug #4857: Search on ecogrid server does not return proper results
Fixed in r23242. Changed the ecogrid XML query document in a similar way to the way Ben told me to modify the query f... Sean Riddle
11:50 AM Bug #4857 (Resolved): Search on ecogrid server does not return proper results
I uploaded a test workflow called count.kar (LSID = 8097.16.1) to the Kepler dev repository. I then searched on term ... Sean Riddle
11:15 AM Bug #4848: only first change to Customize Documentation shown in Documentation=>Display
I've filed a bug and an ER against vergil re: an NPE on Get Documentation on actor ports, and Customize Documentation... Derik Barseghian
 

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