Activity
From 06/08/2009 to 07/07/2009
07/07/2009
- 06:54 PM Bug #3874: ptolemy.util.StringUtilities.mergePropertiesFile() deletes properties
- Ok, I can replicate a problem in Kepler under Windows XP
If I do:
cp $PTII/lib/ptII.properties ../ptolemy/lib
Then "... - 03:12 PM Bug #4204: Report Designer - finding drag area on components is hard
- We are postponing this bug until the next release. Fixing requires some time-consuming changes to how we are laying ...
- 09:52 AM Bug #4204: Report Designer - finding drag area on components is hard
- Is this being addressed or are we postponing until later?
- 03:12 PM Bug #4196: Report Designer - Easier to Grab Panels
- *** Bug 4204 has been marked as a duplicate of this bug. ***
- 03:11 PM Bug #4196: Report Designer - Easier to Grab Panels
- Moving this bug to the next release, since changing the layout will require some additional time to get the panels to...
- 03:07 PM Bug #4195: Report Designer - 'Location aware' rendering of newly dropped panels.
- Moving this enhancement to the next release, since it will touch some of the core functionality of the report designe...
- 03:03 PM Bug #4226: Report Designer - use 16pt bold for Report Title text field
- The fonts for the Title text field and the Section text field have been changed, so the the font for the Title text f...
- 09:25 AM Bug #4226 (Resolved): Report Designer - use 16pt bold for Report Title text field
- The stylesheet for rendering the report (as pdf) has the following defaults:
Title: 16pt bold
Section Header: 14pt ... - 01:18 PM Bug #4224: New LSID generated when opened from KAR
- This was an artifact of old code in KeplerGraphTableau that updated the LSID of a workflow if the existing authority ...
- 12:58 PM Bug #4197: Waterflow TPC demo - tracking bug
- "nil" DoubleTokens will remain "nil" (rather than NaN)
- 09:29 AM Bug #4197: Waterflow TPC demo - tracking bug
- For the tutorial:
-we will use the "base" workflow with production data. Most slides and hands-on activities will use... - 09:21 AM Bug #4197: Waterflow TPC demo - tracking bug
- Changes made by Jim:
-month and river are now strings (rather than factors (ie. ints).
-rounding done to 4 places.
C... - 09:51 AM Bug #4161: Develop kepler workflow execution engine
- we've had a couple successful "round trip" runs:
-upload a workflow KAR (indus)
-schedule execution (indus)
-execute ... - 09:47 AM Bug #4227 (Resolved): Provenance - use Integer return type in Queryable interface
- Found out that resultset.getInt(x) will return 0 when in fact there was a null (no result). Changed to not start IDs ...
- 09:42 AM Bug #4225: Provenance - start auto-incremented IDs at 1 not 0
- Dan changed the auto-increment start for HSQLDB to be 1. Works great.
Merged from trunk to our sanparks branch
There... - 09:05 AM Bug #4221: Report Viewer - Need more space between each element
- added padding to the top and bottom of item cells - seems better. re-open if this did not address the specific concerns.
07/06/2009
- 10:55 PM Bug #4221: Report Viewer - Need more space between each element
- which ones in particular?
- 11:03 AM Bug #4221 (Resolved): Report Viewer - Need more space between each element
- Elements in the report view should have some regular spacing between each element.
- 10:48 PM Bug #4222: Report Designer - icon for the static graphic image switches back to generic icon after a drop
- I think keeping the proportions of the original image is better. Yes, it's nice to have consistent icons on the items...
- 05:16 PM Bug #4222: Report Designer - icon for the static graphic image switches back to generic icon after a drop
- Yes, it is still being scaled to a 30 x 30 square. It can be a rectangle or some percentage of the original image, b...
- 02:31 PM Bug #4222: Report Designer - icon for the static graphic image switches back to generic icon after a drop
- is it still scaling it to a square so that some images look squashed in certain directions?
- 02:25 PM Bug #4222: Report Designer - icon for the static graphic image switches back to generic icon after a drop
- A thumbnail version of the user-assigned image is shown as an icon for the static image, if they have selected one. ...
- 11:07 AM Bug #4222 (Resolved): Report Designer - icon for the static graphic image switches back to generic icon after a drop
- You can choose a custom icon for the static graphic image, when you select the graphic for the static image, and the ...
- 10:42 PM Bug #4220: Report Viewer - South label is not being rendered
- was using the wrong xpath for the south label.
- 12:40 PM Bug #4220: Report Viewer - South label is not being rendered
- retarget for 2a1
- 11:01 AM Bug #4220 (Resolved): Report Viewer - South label is not being rendered
- The south label and its value is being created in the model correctly,(it seems) but it is not showing up in the repo...
- 10:21 PM Bug #4223: Report Viewer - Text runs over edge of button for 'Refresh using current layout'
- commented out the button for now. It was also confusing for most users - especially since it could result in wildly d...
- 09:49 PM Bug #4223: Report Viewer - Text runs over edge of button for 'Refresh using current layout'
- I've been meaning to remove the button altogether - this seems like just the motivation to do it!
- 11:13 AM Bug #4223 (Resolved): Report Viewer - Text runs over edge of button for 'Refresh using current layout'
- In the report viewer the text for the button that says "Refresh using current layout' runs over the edges of the button.
- 10:11 PM Bug #4225 (Resolved): Provenance - start auto-incremented IDs at 1 not 0
- I inadvertently noticed that when I queried for the last execution of a workflow that never ran I was still getting b...
- 04:33 PM Bug #4224 (Resolved): New LSID generated when opened from KAR
- When a KAR is opened on a computer that did not save it, the LSID of the workflow/model is changed.
See attached KAR... - 11:14 AM Bug #3874: ptolemy.util.StringUtilities.mergePropertiesFile() deletes properties
- I just saw this bug occur on windows xp: if $PTII/lib/ptII.properties exists, Kepler won't start:
[run] Caused by: j... - 10:37 AM Bug #4219 (New): "Kepler Repositories" should be retrieved from the registry
- Currently we use a combination of 2 .properties files to make actor/workflow/run library repositories available for u...
- 10:35 AM Bug #4140: Workflow Run Manager - delete runs functionality needs to be written
- There should also be a confirmation dialog for deletion, 'Are you sure you want to delete these runs?'
07/02/2009
- 07:31 PM Bug #4140: Workflow Run Manager - delete runs functionality needs to be written
- delete functionality added in r19815.
todo:
- check if we need to also delete runs from objectmanager and/or cache.
... - 05:20 PM Bug #4218: Report Designer - difficult to enter text for Item labels
- The window was getting the focus instead of the label. It is fixed now.
- 03:56 PM Bug #4218 (Resolved): Report Designer - difficult to enter text for Item labels
- Clicking in the text area for a dynamic item label rarely keeps my cursor in the field - so I can't really type a lab...
- 11:46 AM Bug #4159: Cut 2.0-alpha/SanParks release
- Added new functionality to the build system. This is checked into the branch, but not into the trunk. Should probab...
- 10:53 AM Bug #4217: Report Viewer - "nil" not rendering consistently/correctly
- committed to the branch.
- 08:36 AM Bug #4217: Report Viewer - "nil" not rendering consistently/correctly
- This is also happening for DoubleTokens - but they show as NaN rather than nil - which I believe is acceptable.
Boole... - 10:52 AM Bug #4211: Report Designer - do not allow dropping of actors on report
- now in branch and head
- 09:31 AM Bug #4211: Report Designer - do not allow dropping of actors on report
- wait - keeping this open until i merge to the branch
- 09:30 AM Bug #4211: Report Designer - do not allow dropping of actors on report
- now checking if the dropped object contains any children - reject the drop if it does
NEED TO COMMIT TO BRANCH - 10:42 AM Bug #4199: NPE in org.kepler.moml.NamedObjId
- I'm getting another exception in NamedObjId that looks related. This one can be reproduced by opening demos/getting-s...
- 10:04 AM Bug #4203: use port parameters in web service actors
- WebService now uses port parameters.
07/01/2009
- 06:11 PM Bug #4217: Report Viewer - "nil" not rendering consistently/correctly
- added special handling when we have IntToken.NIL in the report instance
NEED TO COMMIT TO BRANCH - 06:00 PM Bug #4217: Report Viewer - "nil" not rendering consistently/correctly
- After some digging, I'm going to conclude that this is being introduced by the "deep copy" serialization technique fo...
- 05:41 PM Bug #4217: Report Viewer - "nil" not rendering consistently/correctly
- The PDF seems to render "nil" as "nil" whereas the AWT rendering (from Apache-FOP) sometimes shows a huge integer ins...
- 04:37 PM Bug #4217 (Resolved): Report Viewer - "nil" not rendering consistently/correctly
- When outputting arrays of numbers and booleans that contain "nil" entries in R, they are not converted to NULL for us...
- 05:29 PM Bug #4214: Report Designer - Dragging workflow components near report fields adds text to the fields
- Closing this bug because it is default behavior for the text fields, not sure if there is anything we can do about it...
- 05:28 PM Bug #4207: Report Designer - drop area is too small
- We discussed this, and decided that it would probably be o.k. the way it is for now.
- 05:27 PM Bug #4128: Improve reporting static item icons
- Made the icons smaller and all the same size, but not really happy with them, I think that they are TOO small right n...
- 05:26 PM Bug #4212: Report Designer - Clicking the delete button removes unselected items
- Fixed all remaining issues with this bug.
- 11:02 AM Bug #4212: Report Designer - Clicking the delete button removes unselected items
- forgot to click the fixed button
- 10:34 AM Bug #4212: Report Designer - Clicking the delete button removes unselected items
- fixed. if nothing is selected, nothing will be deleted.
- 05:20 PM Bug #4190: Report Designer - Create View classes for the Items
- Closing this bug, ended up creating view class only for the Dynamic Report Item.
Creating views for the static items ... - 04:35 PM Bug #4197: Waterflow TPC demo - tracking bug
- tpc02-water-flow-high.xml:
-using record-based data table rendering
-including status actor
-"nil" values are showing... - 03:43 PM Bug #4197: Waterflow TPC demo - tracking bug
- -hsqldb 1.8 looks good.
-removed the browser call
-added naive "status" example - needs to be meaningful
Jim will do ... - 12:53 PM Bug #4197: Waterflow TPC demo - tracking bug
- I'm not seeing the memory errors today when using Eclipse with the currently checked in hsql, nor in Eclipse with hsq...
- 09:31 AM Bug #4197: Waterflow TPC demo - tracking bug
- The EML actors throw those exceptions - that is expected.
As for the newer HSQLDB - I will take a look. - 04:05 PM Bug #4159: Cut 2.0-alpha/SanParks release
- created branch
http://code.kepler-project.org/code/kepler/branches/release-2.0.0-pre-alpha1-branch/ for the release. - 03:19 PM Bug #4215: Error when check out provenance with change-to
- Fixed, modules.txt was in the wrong directory.
- 07:54 AM Bug #4215 (Resolved): Error when check out provenance with change-to
- When I tried to check out the provenance suite this week I got the error:
[change-to] Error: The name you specified ... - 02:11 PM Bug #4216 (New): Problems with the File to Array converter
- When attempting to run the "File to Array converter" actor as part of a workflow which creates a text file from the o...
- 01:22 PM Bug #4164: Associated Data - wf_exec_id behavior
- I checked in hsqldb 1.8 in r19734 and that seems to fix this problem. Closing.
06/30/2009
- 06:40 PM Bug #4164: Associated Data - wf_exec_id behavior
- I'd like to move to 1.8 if possible since this bug is going to be pretty bad for users, they'd seemingly have to clea...
- 06:35 PM Bug #4197: Waterflow TPC demo - tracking bug
- On my Eclipse build, which is using hsqldb 1.8, I get the same, and some additional errors. Provenance gives an "ERRO...
- 06:24 PM Bug #4197: Waterflow TPC demo - tracking bug
- I'm getting a lot of error messages on the console when I open this workflow. It seems to run ok though. (This is whi...
- 04:07 PM Bug #4197: Waterflow TPC demo - tracking bug
- -column headers are capitalized.
-header rows are shaded
-overflowing cell contents are truncated
TODO: remove browse... - 07:48 AM Bug #4197: Waterflow TPC demo - tracking bug
- In the tpc02-water-flow-base.xml workflow I have the table rendering in reporting not using the R data2html method no...
- 04:44 PM Bug #4212: Report Designer - Clicking the delete button removes unselected items
- If nothing is selected, don't delete anything.
- 02:59 PM Bug #4212 (Resolved): Report Designer - Clicking the delete button removes unselected items
- If nothing is selected on the canvas and I click the delete button, it seems to remove a randomly chosen component. ...
- 04:42 PM Bug #4188: Report Designer - Issues with text fields
- chad and I do not see this happening anymore
- 04:12 PM Bug #4188: Report Designer - Issues with text fields
- I think this is fixed now, and we can close this bug, after Ben tests it.
- 10:59 AM Bug #4188: Report Designer - Issues with text fields
- just dragging a new text component onto the canvas deletes the text in most of the other text components (but not all...
- 10:58 AM Bug #4188: Report Designer - Issues with text fields
- *** Bug 4205 has been marked as a duplicate of this bug. ***
- 04:40 PM Bug #4209: Report Designer - Text randomly disappears when dragging new components
- not seeing this after latest update
- 11:04 AM Bug #4209 (Resolved): Report Designer - Text randomly disappears when dragging new components
- If you have some text components on the canvas with text in them, then you drag a new component onto the canvas, some...
- 04:40 PM Bug #4210: Report Designer - scrollbar goes off the screen
- switched to BorderLayout for the tab
- 11:07 AM Bug #4210 (Resolved): Report Designer - scrollbar goes off the screen
- The scrollbar on the right goes off of the screen so that I can't see the bottom of it.
- 04:04 PM Bug #4206: Report Designer - layout in left pane is scrunched up
- moved the split pane bar down so that the panel doesn't get crunched.
- 10:54 AM Bug #4206: Report Designer - layout in left pane is scrunched up
- attaching screenshot of scrunched layout
- 10:53 AM Bug #4206 (Resolved): Report Designer - layout in left pane is scrunched up
- The panel on the left from which you drag components is too small initially. You have to drag to make it larger. It...
- 03:37 PM Bug #4213: Report Designer - north and south labels swap
- this appears to be fixed now - north and south are maintained
- 03:07 PM Bug #4213: Report Designer - north and south labels swap
- The ROML is being serialized to XML corrected (i.e. the label entered for "north" is stored in that label) so it's ju...
- 03:02 PM Bug #4213 (Resolved): Report Designer - north and south labels swap
- Typically happening with another item is dropped on the layout.
The swap seems to only happen once. - 03:05 PM Bug #4214 (Resolved): Report Designer - Dragging workflow components near report fields adds text to the fields
- If you drag an actor or ports of an actor to the canvas and accidentally drop them into a text field, text from the m...
- 02:08 PM Bug #4102: Add the ability to insert a static image into the report.
- For this release, this bug can be closed.
- 02:06 PM Bug #4208: Report Designer - dragging from the component window to the canvas does not drop where you want it
- There is already a bug entered for this, so this is a duplicate of bug # 4195
*** This bug has been marked as a dupl... - 11:01 AM Bug #4208 (Resolved): Report Designer - dragging from the component window to the canvas does not drop where you want it
- If you drag a component from the components pane onto the canvas between two components, the new component shows up a...
- 02:06 PM Bug #4195: Report Designer - 'Location aware' rendering of newly dropped panels.
- *** Bug 4208 has been marked as a duplicate of this bug. ***
- 11:20 AM Bug #4211 (Resolved): Report Designer - do not allow dropping of actors on report
- We should only allow "leaves" (ports/parameters) that have no children to be reported on.
- 11:18 AM Bug #4103: Add the capability of creating SECTIONS in the report.
- we have "section" headers now
- 10:58 AM Bug #4205: Report Designer - dragging component makes text disappear
- duplicate
*** This bug has been marked as a duplicate of bug 4188 *** - 10:51 AM Bug #4205 (Resolved): Report Designer - dragging component makes text disappear
- When you drag a component around the canvas, the text in the text boxes disappears. It should remain in the dragged ...
- 10:56 AM Bug #4176: Report Designer - opening KAR omits title
- found the place where the title was being set to blank - fixed it
- 10:56 AM Bug #4207 (Resolved): Report Designer - drop area is too small
- When dragging components around on the canvas, the drop area is too small so it's hard to get components to go where ...
- 10:50 AM Bug #4204 (Resolved): Report Designer - finding drag area on components is hard
- It's too hard to find where to click on a report item to drag it around on the canvas. You have to move the mouse ju...
- 10:17 AM Bug #4203 (In Progress): use port parameters in web service actors
- It would be nice if the inputs to WebService and WSWithComplexTypes were port parameters instead of ports.
- 09:25 AM Bug #4200: wrp suite - blank workflow says you've made changes upon exit
- committed this change to provenance
- 09:23 AM Bug #4200: wrp suite - blank workflow says you've made changes upon exit
- In org.kepler.provenance.gui.ProvenanceConfigureAction.addProvenanceRecorder() there was a call to effigy.setModified...
- 08:21 AM Bug #4200: wrp suite - blank workflow says you've made changes upon exit
- That sounds like the problem. There should be some way to insert those properties only upon model modification inste...
- 07:54 AM Bug #4200: wrp suite - blank workflow says you've made changes upon exit
- Reporting an Provenance both inject top level attributes in the model if they do not exist: a ProvenanceRecorder for ...
06/29/2009
- 05:54 PM Bug #4201: Cannot set column widths on the Workflow Report Tab
- fixed in r19633.
Feel free to tweak the widths.
I had problems when trying to leave auto resize on and set all setP... - 05:12 PM Bug #4201: Cannot set column widths on the Workflow Report Tab
- You can get the WRM column widths to take effect if you first
wrmjTable.setAutoResizeMode(JTable.AUTO_RESIZE_OFF);
H... - 04:37 PM Bug #4201 (Resolved): Cannot set column widths on the Workflow Report Tab
- I'm trying to set the widths on the columns for the workflow report pane. The columns refuse to change their widths....
- 04:47 PM Bug #4202 (Resolved): typos in modules.txt are ignored
- A line in modules.txt with bad a module/suite name is silently ignored.
An error message should be printed and ant ... - 04:34 PM Bug #4164: Associated Data - wf_exec_id behavior
- If you're sure that updating isn't going to break anything, go for it. If there is any doubt, don't do it.
- 04:32 PM Bug #4164: Associated Data - wf_exec_id behavior
- I was seeing this bug again today on linux and mac. Upgrading to hsqldb 1.8 *seems* to solve the bug -- I've been una...
- 04:32 PM Bug #4200 (Resolved): wrp suite - blank workflow says you've made changes upon exit
- If you open kepler under the WRP suite, then just quit it immediately, it asks you twice if you'd like to save your c...
- 04:31 PM Bug #4199 (Resolved): NPE in org.kepler.moml.NamedObjId
- I get the following exception:
java.lang.NullPointerException
at org.kepler.moml.NamedObjId.changeExecuted(Named... - 01:44 PM Bug #4198 (Resolved): important sanparks tasks
- The following is the minimum functionality required for the code freeze tomorrow.
Client functionality
----------... - 01:37 PM Bug #4193: ActorMetadata - clone() error when opening workflow from KAR
- fixed bug in actormetadata cloning where an exception wasn't getting handled.
- 01:05 PM Bug #4193: ActorMetadata - clone() error when opening workflow from KAR
- Chad fixed the clone bug. I tested it and it worked under GUI mode. Under
the command line mode, the kar file can ... - 01:06 PM Bug #4197: Waterflow TPC demo - tracking bug
- Opening from the exported KAR is causing some problems - that's in another bug.
There are two files for this TPC (in ... - 01:01 PM Bug #4197 (Resolved): Waterflow TPC demo - tracking bug
- Will be using this as a demonstration of the TPC reporting system. Logging development here (might overlap with the t...
- 12:59 PM Bug #3992: Report Designer - finalize Report item properties
- closing - will add properties as needed
- 12:47 PM Bug #3992: Report Designer - finalize Report item properties
- i'm going to postpone adding the "repeat labels for all" option and all of the "which token of multiple tokens did yo...
- 11:11 AM Bug #4196 (Resolved): Report Designer - Easier to Grab Panels
- Need to make it a little easier to grab the report item panels. Because of the border layout in the panels, and the ...
- 11:05 AM Bug #4195 (Resolved): Report Designer - 'Location aware' rendering of newly dropped panels.
- Right now, when a user drops a report item onto a report, the report designer simply places the panel at the end (bot...
- 08:59 AM Bug #4102: Add the ability to insert a static image into the report.
- this seems to be in the model when i render it - is it "done"?
- 08:53 AM Bug #4188: Report Designer - Issues with text fields
- retarget to 2a1 release
- 08:53 AM Bug #3638: Report design features, Stage 2
- this appears to be working now
- 08:52 AM Bug #4103: Add the capability of creating SECTIONS in the report.
- now rendering this in the report instance
- 07:43 AM Bug #4186: Metacat assumes (revision > 1) means "update" not "insert"
- committed to svn
06/27/2009
- 09:55 AM Bug #4194 (Resolved): Kepler should have the Continous and Modal domains
- In Ptolemy II 8.0, we are upgrading the ct domain to the continuous domain
and the fsm domain to the modal domain.
...
06/26/2009
- 04:51 PM Bug #4192: WRM - do not prompt for KAR file when uploading to repository
- Fixed. it now gets the file from CacheManager.getTempFile().
- 04:04 PM Bug #4192 (Resolved): WRM - do not prompt for KAR file when uploading to repository
- When you select a run in the workflow run manager, right click, select "Upload" you are prompted to specify a save lo...
- 04:51 PM Bug #4193 (Resolved): ActorMetadata - clone() error when opening workflow from KAR
- Error:
....blah blah blah....
Caused by: ptolemy.kernel.util.IllegalActionException: Could not find a port named 'o... - 04:46 PM Bug #4186: Metacat assumes (revision > 1) means "update" not "insert"
- i have this working locally - will check into seek (svn) next
- 02:48 PM Bug #4186: Metacat assumes (revision > 1) means "update" not "insert"
- This is actually in ecogrid. I can see where the check is in the ecogrid implementation.
My plan: check if the id exi... - 11:48 AM Bug #4186 (Resolved): Metacat assumes (revision > 1) means "update" not "insert"
- When trying to upload workflows from Kepler we often (almost ALWAYS) have generated LSIDs that have revision > 1.
Fo... - 04:33 PM Bug #4191: Eclipse build is slow the first time "Copying resources to the output folder"
- The first time Eclipse is used to build Kepler, the build hangs
for several minutes.
I had one user who thought that... - 03:57 PM Bug #4191 (Resolved): Eclipse build is slow the first time "Copying resources to the output folder"
- I just verified that under Windows, the Eclipse build has errors because
of apple-extension.
David Welker wro... - 04:11 PM Bug #2493: actor repository tracking bug
- The stuff needed for sanparks is done. pushing to 2.0 release.
- 10:35 AM Bug #2493: actor repository tracking bug
- in response to comment #9, I fixed the issues with the LSID conflicts on upload (using the uploadToRepository method)...
- 02:57 PM Bug #4189: Report Designer - Dynamic Report Item labels are not rendering correctly
- I think we can close this bug.
- 02:55 PM Bug #4189: Report Designer - Dynamic Report Item labels are not rendering correctly
- This bug has been fixed, the dynamic report item panels are now rendering correctly, and should be correct in the mod...
- 12:22 PM Bug #4189 (Closed): Report Designer - Dynamic Report Item labels are not rendering correctly
- After the labels are filled in, and then re-ordered, the dynamic report item panels are not rendering the labels corr...
- 02:55 PM Bug #3942: Report Designer - add/edit item labels
- This bug has been fixed, and is now working.
- 12:11 PM Bug #3942: Report Designer - add/edit item labels
- We can add the labels, but there is a bug with the labels and the model not being in sync.
- 12:07 PM Bug #3942: Report Designer - add/edit item labels
- A custom panel for a dynamic report item has been created that provides text fields in the North, South, West, and Ea...
- 12:29 PM Bug #4190 (Resolved): Report Designer - Create View classes for the Items
- Create a 'view' class for each of the dynamic and static item subclasses.
This might help to make it easier to synch... - 12:20 PM Bug #4188 (Resolved): Report Designer - Issues with text fields
- After a few drag and drop operations the text in the section header panels and the text in the static text panels get...
- 12:17 PM Bug #4103: Add the capability of creating SECTIONS in the report.
- We can add sections to the report, and the text is larger and bold for the section headers.
- 12:16 PM Bug #4187 (Resolved): When running with reporting suite, a blank canvas is considered changed and unsaved
- When running with the following modules.txt:
wrp
workflow-run-manager
*reporting
if you close a new canvas, i... - 12:16 PM Bug #4102: Add the ability to insert a static image into the report.
- We can insert the static image into a report, get a thumbnail image from the file system, and get the path to that im...
- 12:12 PM Bug #3993: Report Designer - add parameters to the Items of Interest
- This bug can be closed, because we changed from adding parameters directly, to allowing the user to add them from the...
- 12:09 PM Bug #3992: Report Designer - finalize Report item properties
- I believe that we have finalized the item properties, but not sure if the 'repeat once, 'repeat all' properties are w...
- 11:59 AM Bug #3635: Create ReportItem Type Hierarchy
- I am closing this bug, since this was created quite some time ago, although it did not look like the original hierarc...
- 10:53 AM Bug #4185: TabManager acting strangely
- WorkflowRunManagerPanel was falsely assuming that calling topLevel() on a model would return a CompositeActor. Inste...
- 10:37 AM Bug #4185: TabManager acting strangely
- This seems to only happen for WRP. Maybe because there are way more tabs and frames in the WRP interface. I'm seein...
- 10:27 AM Bug #4185 (Resolved): TabManager acting strangely
- The TabManager is calling intializeTabs() twice. Once at startup and once at shutdown. Each time, the parent arg is...
- 10:29 AM Bug #4148: Workflow Run Manager - Upload to Repository feature
- okay - i'm happy with this feature closing
- 10:22 AM Bug #4148: Workflow Run Manager - Upload to Repository feature
- now checking for existing workflows - will not attempt to upload again if it already exists
06/25/2009
- 04:46 PM Bug #2493: actor repository tracking bug
- We're now using the "repository" for many different things:
-actors
-workflows
-workflow runs
-kars (which might cont... - 04:43 PM Bug #4169: Build "server-side" installation of Kepler
- This now works. The KeplerConfigurationApplication (a non-gui implementation of kepler that also loads a full config...
- 04:40 PM Bug #4020: WRP - create WorkflowRun object to encapsulate provenance/report instances
- We've got this working as we need it for SANParks
- 03:57 PM Bug #4020: WRP - create WorkflowRun object to encapsulate provenance/report instances
- using this:
<property name="ReportInstance0"
class="ptolemy.kernel.util.StringAttribute" value="RIO.5.pdf">
might b... - 04:05 PM Bug #4148: Workflow Run Manager - Upload to Repository feature
- I want to add more specific error handling around each of the put() calls so that we know exactly what is happening. ...
- 04:03 PM Bug #4148: Workflow Run Manager - Upload to Repository feature
- We are allowing for a "-repository" parameter as well. It will let us specify which of the configured Repositories we...
- 01:16 PM Bug #4148: Workflow Run Manager - Upload to Repository feature
- "-server" is now a commandline option that will set a Configuration attribute. ReportingListener will check this and ...
- 04:02 PM Bug #4163: erroneous hsql database creation
- I don't see the extra folder anymore, looks good
- 03:59 PM Bug #4163: erroneous hsql database creation
- we're now using the cache's hsqldb instance and not doing anything to make a separate provenance database.
i'm closin... - 04:01 PM Bug #3992: Report Designer - finalize Report item properties
- i'm thinking "HIDE" will be a good one too, especially if we want to hide the TPC Status item that we'll be putting o...
- 03:47 PM Bug #4176: Report Designer - opening KAR omits title
- Just verified that this is still a bug.
My test includes a kar file with a report layout that has a title and two ite... - 03:42 PM Bug #4001: WRP - Save/Open KARs containing MOMLs and ROMLs
- we can do this from within the GUI.
we can do this on the command-line (thanks chad!)
- 03:38 PM Bug #4000: WRP - upload PRAs to repository
- we've now done a preliminary upload to indus - this looks good. will refine, but closing this
- 02:14 PM Bug #4184: EML 2 Dataset disregarding selectedEntity from XML
- was "resetting" too many things in the actor when the recordID was updated (after changing latest version).
now only ... - 01:19 PM Bug #4149: Workflow Run Manager - Export Runs feature
- marking as fixed - for sanparks.
As we extend this feature for REAP, we can add a new bug.
06/24/2009
- 06:12 PM Bug #4184 (Resolved): EML 2 Dataset disregarding selectedEntity from XML
- 1. Drag an EML 2 Dataset actor onto the canvas and change the selectedEntity field from the initial value.
2. Save t... - 02:25 PM Bug #4183 (Resolved): Kepler gives error on command+Q
- If I run with the following modules.txt:
wrp
workflow-run-manager
*reporting
I get the following error if I e... - 01:07 PM Bug #4148: Workflow Run Manager - Upload to Repository feature
- Looks like derik has this non-gui portion working.
I'm now using his classes (in the provenance module) to do the exp... - 11:45 AM Bug #4151: exported RIO and ROML doc run-pairs have same KeplerLSID
- reading the history - i believe we can close this bug (again)
- 10:19 AM Bug #3632: TPC exceedence notification feature
- entry in the config.xml allows us to include many report items in the run metadata:
<!-- Reporting configuration -->... - 08:26 AM Bug #4182: Composite Actor input port tokens not recorded
- i guess i'll close this then!
06/23/2009
- 06:29 PM Bug #4182: Composite Actor input port tokens not recorded
- There is no port event to record. To see this, do a 'Listen to Port' on the composite's input port. Port events do no...
- 05:35 PM Bug #4182 (Resolved): Composite Actor input port tokens not recorded
- I have a String Constant actor connected to an input port of a composite actor (see attached) and there is no port ev...
- 04:19 PM Bug #3632: TPC exceedence notification feature
- Okay - fairly easy to look up values from the ReportInstance.
Now it's just a matter of making a standard report elem... - 01:53 PM Bug #3632: TPC exceedence notification feature
- i'm going to take a stab at extracting a field from the reportinstance (post run) and adding a field to the WorkflowR...
- 03:24 PM Bug #4180: Kepler command-line execution with cache
- Added to ConfigurationApplication the ability to load a config from the command line. Added a configuration to keple...
- 02:51 PM Bug #4180: Kepler command-line execution with cache
- Ptolemy now has a baseclass that does not set the look and feel.
The log message says:
-start---
Created base class ... - 10:44 AM Bug #4180: Kepler command-line execution with cache
- Now works by using the ptolemy.moml.MoMLCommandLineApplication from within org.kepler.loader.Kepler. This should eve...
- 07:42 AM Bug #4180 (Resolved): Kepler command-line execution with cache
- For the webservice execution implementation, we need to be able to run workflows w/o the gui but with the cache enabl...
- 02:30 PM Bug #4174: Actor library not building correctly
- yeah, rev 19364 of KarFile was the problem, I've rolled back that change and it is working again.
- 11:07 AM Bug #4174: Actor library not building correctly
- Break occurs in r19364, changes to trunk/modules/core/src/org/kepler/kar/KARFile.java:
"subtle correction: if we find... - 10:49 AM Bug #4174: Actor library not building correctly
- This is now a problem in the kepler suite as well.
- 10:47 AM Bug #4174: Actor library not building correctly
- Narrowing this down a little: broken in r19366, but not in r19350.
- 01:46 PM Bug #4102: Add the ability to insert a static image into the report.
- Can now specify a header image in the ReportLayout (cascades into the rendered version, too).
Not yet a way to specif... - 01:44 PM Bug #4181: WRM - provenance sql.properties "DB Name" ignored
- now pointing to the cache's hsqldb instance (running in server mode).
no longer need to treat the dbname in the prope... - 08:11 AM Bug #4181 (Resolved): WRM - provenance sql.properties "DB Name" ignored
- my sql.properties bundle has a different DB Name setting (so that I can connect to the cache's hsqldb instance).
Whe... - 10:54 AM Bug #3957: Report Designer - remove items of interest from the list
- This bug is being closed because we are switching to using the outline view of the workflow for adding dynamic report...
- 07:48 AM Bug #3672: Open/Save Workflow as KAR Archive
- this is not actually a bug about "Opening" a workflow - it has to do with "Importing"
I'd previously misunderstood. R... - 07:37 AM Bug #3992: Report Designer - finalize Report item properties
- [image] width and whether to scale-to-fit are now optional properties on every item.
06/22/2009
- 06:13 PM Bug #4138: Workflow Run Manager - search cell edit focus isn't lost appropriately
- This was partially fixed with r19403. Cell editors that extend DefaultCellEditor still have the problem.
- 05:46 PM Bug #4174: Actor library not building correctly
- Not sure if the problem is still "actor library not building correctly" but I'm not seeing components in the tree in ...
- 05:37 PM Bug #4179: ant jar does not include configs/
- Here is the code from line 106:
dirs.add( module.getTargetClasses() );
dirs.add( module.getSrc() );
... - 05:34 PM Bug #4179 (Resolved): ant jar does not include configs/
- The jars produced by 'ant jar' do not include any of the files in configs/.
- 05:19 PM Bug #4170: Ensure reporting/provenance do not rely on any GUI classes
- as far as reporting is concerned, this is done. need to make sure the -nogui ("withcache") run is working.
- 01:42 PM Bug #4170: Ensure reporting/provenance do not rely on any GUI classes
- ReportingListener is now added to the MOML model by the Initializer if not already present.
Once the model is saved (... - 04:31 PM Bug #4122: File -> Save As does not assign new LSID
- Save as now assigns a new LSID.
- 04:21 PM Bug #3996: Report Model - [de]serialize Items of Interest
- closing this - not needed since we are using the Outline viewer as a source for items of interest
- 03:58 PM Bug #3994: Report Designer - use "workflow outline" rather than Items of Interest
- now the top portion of the ItemsOfInterestPanel [re]uses the workflow outline view of the workflow contents. you can ...
- 03:44 PM Bug #4149: Workflow Run Manager - Export Runs feature
- The problem in comment #2 was fixed some time ago.
- 12:23 PM Bug #4178 (Resolved): error handling with MoMLCommandLineApplication
- It would be nice if MoMLCommandLineApplication called Manager.run() instead of execute() so that any execution listen...
06/19/2009
- 09:39 PM Bug #3994: Report Designer - use "workflow outline" rather than Items of Interest
- This is now a viable source for ports AND parameters.
I'd like to use it as the sole source for Dynamic Report Items.
- 08:17 PM Bug #3994: Report Designer - use "workflow outline" rather than Items of Interest
- I've modified the designer panel to allow it to accept dragged objects (NamedObjs) from the outline view.
This is a m... - 09:27 PM Bug #4177: WRP - look up Parameter values from Provenance
- added a method to provenance to look up the type (port/parameter/etc).
using that to decide where/how to retrieve the... - 08:31 PM Bug #4177 (Resolved): WRP - look up Parameter values from Provenance
- Turns out Parameter values are stored differently than the tokens that are passed among actors.
Will need to augment... - 07:24 PM Bug #2493: actor repository tracking bug
- this isn't just for Actors - this is for Workflows. Just want to make sure we're all keeping that in mind.
The same "... - 05:57 PM Bug #4036: WRM - connect to configurable provenance store
- the config dialog is not being shown now - so we don't really need to worry too much about this [for SANParks].
I'm g... - 05:54 PM Bug #4164: Associated Data - wf_exec_id behavior
- I'm unable to get this bug to occur today...but Dan was seeing it today.
- 05:02 PM Bug #4164: Associated Data - wf_exec_id behavior
- Examples showing weird behavior of selects on associated_data table
- 05:54 PM Bug #4176 (Resolved): Report Designer - opening KAR omits title
- When I:
-design a report layout and "Export to KAR"
-close Kepler
-run Kepler
-open the kar "Open KAR"
I get mos... - 04:56 PM Bug #3992: Report Designer - finalize Report item properties
- augmented the style sheet (XSLT) to handle some Item Properties:
handle:
-new subclasses of StaticReportItem (HR)
-It... - 03:53 PM Bug #3992: Report Designer - finalize Report item properties
- all static report items currently have: HEIGHT and WIDTH properties.
HR Items have only WIDTH.
more to come... - 03:52 PM Bug #3992: Report Designer - finalize Report item properties
- doing some work on this
- 12:42 PM Bug #4160: EML - Dynamic data retrieval
- Jim has this working in the riverflow tpc.
And I've recently made the "check for latest" feature of EML work as it ne... - 12:41 PM Bug #3672: Open/Save Workflow as KAR Archive
- related to other bug that is slightly reporting-specific.
same functionality, however - 12:18 PM Bug #3999: WRP - create event-driven states for Kepler
- using this to update the Report Viewer when the view is selected. Also alerts the Report View TOC of a report instanc...
- 12:15 PM Bug #4172: Use DEV server for registry in the WRP suite
- WRP is pointing to dev for:
registry
authentication
repository - 12:07 PM Bug #4175: EML - Verify check latest revision
- tested with the attached workflow - i'm happy with this.
- 12:05 PM Bug #4175: EML - Verify check latest revision
- NOTE: in order for this to function properly, it must be run in the WRP suite of kepler that currently points to the ...
- 12:02 PM Bug #4175: EML - Verify check latest revision
- When the EML actor initializes, it will check for the latest and get the latest if the checkbox is selected.
When a W... - 09:13 AM Bug #4175 (Resolved): EML - Verify check latest revision
- Need to make sure this is working correctly when a WF is [re]opened and run.
It needs to pull in any new (or deleted... - 09:34 AM Bug #4174: Actor library not building correctly
- It has been verified that this fix worked and the Components are showing up again in the actor library.
06/18/2009
- 11:36 PM Bug #4174: Actor library not building correctly
- It seems that the tagging module is overriding the ontologies. It just so happens that the kepler-component.owl file...
- 09:19 PM Bug #4174 (Resolved): Actor library not building correctly
- Many of the actors are not appearing in the actor library when using the WRP suite. No visible errors are given...
- 06:11 PM Bug #4122: File -> Save As does not assign new LSID
- We need this to be fixed for the SANParks release...I think this will be pretty confusing for the user.
- 05:15 PM Bug #4160: EML - Dynamic data retrieval
- looks like we got this going in terms of getting the existing tables.
next up: check for latest revision! - 08:38 AM Bug #4160: EML - Dynamic data retrieval
- testing this new output format with R actor downstream - looks promising, but deferring to Jim's R expertise to get t...
- 05:11 PM Bug #4151: exported RIO and ROML doc run-pairs have same KeplerLSID
- I've prepended the workflow name to the ROML.xml entry that is generated.
While it's non-unique, perhaps it's the fir... - 04:58 PM Bug #4151: exported RIO and ROML doc run-pairs have same KeplerLSID
- Okay - that makes more sense: same kar entry name (ROML.xml) but different LSIDs
That'll definitely need to be addres... - 11:57 AM Bug #4151: exported RIO and ROML doc run-pairs have same KeplerLSID
- I thought that too; not aware of any changes to that code.
I think this problem only occurs when you're trying to ex... - 11:50 AM Bug #4151: exported RIO and ROML doc run-pairs have same KeplerLSID
- i thought we made it so that if they had the same LSID and the same name, we'd only include the last one that was add...
- 11:23 AM Bug #4151: exported RIO and ROML doc run-pairs have same KeplerLSID
- This breaks the ability to export more than one run, since each run will have a ROML.xml, and an error about duplicat...
- 08:58 AM Bug #4151: exported RIO and ROML doc run-pairs have same KeplerLSID
- for the time being, both ROMLs will be included.
- 01:54 PM Bug #4172: Use DEV server for registry in the WRP suite
- http://dev.nceas.ucsb.edu/registry/services/RegistryService is now providing services that point to DEV (not producti...
- 01:28 PM Bug #4172: Use DEV server for registry in the WRP suite
- The servers are set up and ready to go.
I'm currently updating the registry entries so that we point to the correct ... - 01:26 PM Bug #4172 (Resolved): Use DEV server for registry in the WRP suite
- For testing and training it will be very useful to have dev.nceas.ucsb.edu and kepler-dev.nceas.ucsb.edu set up as ou...
- 01:16 PM Bug #4171: dragging actor to canvas then back to component tree area gives NPE
- It looks like this bug is specific to the wrp suite; I don't get it in the kepler trunk or the workflow-run-manager m...
- 01:00 PM Bug #4171: dragging actor to canvas then back to component tree area gives NPE
- I can't reproduce this in Ptolemy or Kepler on the Mac under Java 1.5.0_19.
What platform and version of Java are you... - 12:03 PM Bug #4171 (Resolved): dragging actor to canvas then back to component tree area gives NPE
- I'm getting an NPE when I drag a component out to canvas, don't drop, and then drag it back over the component tree a...
- 12:22 PM Bug #4164: Associated Data - wf_exec_id behavior
- I'm looking into this...
- 11:38 AM Bug #4020: WRP - create WorkflowRun object to encapsulate provenance/report instances
- So to have an example all in one place, this is what an example workflow-run moml metadata doc. If everyone (e.g. mik...
- 11:11 AM Bug #4161: Develop kepler workflow execution engine
- In the client-side GUI version of Kepler we open/run workflows and reports like so:
1-Open KAR (contains the workflow... - 09:08 AM Bug #4161: Develop kepler workflow execution engine
- After discussion with Jing and Derik yesterday:
1-we need to make sure we have a server-side version of Kepler that i... - 10:56 AM Bug #2493: actor repository tracking bug
- I started working on this yesterday. I found major problems with how lsids are assigned when uploading to the reposi...
- 10:41 AM Bug #4169: Build "server-side" installation of Kepler
- Jing and I are working on figuring out how to deploy kepler for the webservice. The jars for kepler can easily be cr...
- 10:18 AM Bug #4169 (Resolved): Build "server-side" installation of Kepler
- Sounds like the Kepler webservice uses a snapshot (jar?) of Kepler to execute workflows via the webservice.
For sanp... - 10:40 AM Bug #4021: KAREntry Handler
- We have the following KAREntryHandlers:
-ActorMetadata (for workflows/momls)
-ReportLayout (for ROML)
-ReportInstance... - 10:28 AM Bug #4170 (Resolved): Ensure reporting/provenance do not rely on any GUI classes
- I'm not entirely sure how much of the "GUI" code is ever called when we execute a workflow fromthe command line. But ...
- 09:49 AM Bug #4168 (New): User documentation creates bloat in workflows
- Currently, the user documentation is copied into every actor instance as the actor is drug to the canvas. The proble...
- 09:11 AM Bug #4163: erroneous hsql database creation
- retargeting - be good if this was resolved.
I'm also thinking we should change the default provenance store to use th...
06/17/2009
- 07:10 PM Bug #3898: update .kepler instead of removing it between versions
- Progress on this bug. The InstanceAuthNamespace is kept at the project root. A configuration directory is now creat...
- 07:00 PM Bug #2493: actor repository tracking bug
- I'm starting to upload KARs, sets of metadata docs that point at them (workflows and workflow runs) and sets of acces...
- 06:36 PM Bug #4164: Associated Data - wf_exec_id behavior
- I'm still seeing this in wrp, even after a full clean. It seems to consistently begin happening on the third instance...
- 12:37 PM Bug #4160: EML - Dynamic data retrieval
- new data output format emits information about each datatable (including the pointer to the cache file).
This allows ...
06/16/2009
- 04:10 PM Bug #4164: Associated Data - wf_exec_id behavior
- Also once it starts happening, it seems to happen every time, even new kepler instances.
- 04:07 PM Bug #4164: Associated Data - wf_exec_id behavior
- This is what I did, twice, to the same effect, but if it's a race condition I wouldn't be surprised if it was just co...
- 03:53 PM Bug #4164: Associated Data - wf_exec_id behavior
- I'm seeing this issue again, reopening.
- 12:13 PM Bug #4164: Associated Data - wf_exec_id behavior
- i'm not finding this as a problem - changed a bunch of stuff with how files are written and it seems to be happy now....
- 03:25 PM Bug #4161: Develop kepler workflow execution engine
- Here is matt's comment:
<matt> hey jing
<matt> i saw your bugzilla note about retrieving KAR files by LSID
<jing> hi,... - 03:11 PM Bug #4161: Develop kepler workflow execution engine
- Of course, adding metacatID is a short term solution.
- 03:09 PM Bug #4161: Develop kepler workflow execution engine
- In execute(workflowID) method, we need to get the kar file from metacat first.
To my understanding. The workflowID w...
06/15/2009
- 07:44 PM Bug #4164 (Resolved): Associated Data - wf_exec_id behavior
- Derik and I are running into a rather odd problem when querying the ASSOCIATED_DATA table for records. It appears tha...
- 06:38 PM Bug #4163: erroneous hsql database creation
- I should also mention that I also see the same four files where I would expect to see them, in C:\Documents and Setti...
- 06:34 PM Bug #4163 (Resolved): erroneous hsql database creation
- When I run the wrp suite on my windows machine a new directory appears inside of the wrp module directory called "Doc...
- 04:23 PM Bug #4147: Error message with selectable text
- It turns out that this fix causes the dialogs to be very wide because
the JTextArea is one line, whereas JLabel wraps... - 04:15 PM Bug #3801: open dialog, common places pane has white box instead of text
- Assigning this to myself.
- 04:15 PM Bug #3801: open dialog, common places pane has white box instead of text
- I'm reopening this bug, there are problems with the code under:
* Windows Server 2003 via Windows Remote Desktop. Ja... - 03:53 PM Bug #4162 (New): using the alt key makes menus appear in strange places on OSX
- if you do alt-F or alt-E on the mac, the menu shows up on the application window instead of coming down from the menu...
- 03:15 PM Bug #4103: Add the capability of creating SECTIONS in the report.
- Yes, you are correct, it was identified as a high priority for the first release. In addition, this bug is being work...
- 01:57 PM Bug #4103: Add the capability of creating SECTIONS in the report.
- i believe this was identified as a high priority for 2a1. we can retarget if i was mistaken
- 03:06 PM Bug #4161 (Resolved): Develop kepler workflow execution engine
- Here is the an email from matt:
I think the next stage would be to have you work on
putting together an execution... - 03:04 PM Bug #3672: Open/Save Workflow as KAR Archive
- we absolutely need to Save and Open KARs that contain:
-1 workflow (MOML)
-1 report layout (ROML) - 03:01 PM Bug #3649: determine if Provenance has everything needed by Reporting
- we do have all the file artifacts being inserted.
I note the comment about provenance storing things from plotting ac... - 03:01 PM Bug #4149: Workflow Run Manager - Export Runs feature
- Exporting runs where reporting has been used is now broken. I don't know why yet. I get this error:
java.lang.NullPo... - 01:28 PM Bug #4149: Workflow Run Manager - Export Runs feature
- perhaps split this bug into two - one for the very near 2a1 release and another for the full-REAP/2.0 version?
- 03:00 PM Bug #4151: exported RIO and ROML doc run-pairs have same KeplerLSID
- In the case where I don't do anything with reporting, I get ROML.xml and ROML.N.xml files. The files are identical an...
- 02:54 PM Bug #3936: Report Viewer - handle Image items
- we are able to serialize to the XML file - even better!
- 02:48 PM Bug #4160 (Resolved): EML - Dynamic data retrieval
- The existing EML actor is able to get the latest revision of a datapackage.
We need to augment EML data access and a... - 02:30 PM Bug #3992: Report Designer - finalize Report item properties
- Some recommendations for 2a1:
Images:
-height/width
-scale-to-fit (either)
HR:
-width
-weight
Labels:
-N/S/E/W
-re... - 02:28 PM Bug #3957: Report Designer - remove items of interest from the list
- leave out of 2a1 - not needed if we use Outline view for the designer
- 02:10 PM Bug #3942: Report Designer - add/edit item labels
- we definitely need labels for the items
- 02:01 PM Bug #4102: Add the ability to insert a static image into the report.
- i believe this was also identified as important for the training
- 01:56 PM Bug #3994: Report Designer - use "workflow outline" rather than Items of Interest
- i'm going to push that this be the approach we take for the 2a1 release.
- 01:51 PM Bug #3638: Report design features, Stage 2
- The ability to add a section header has already been added. Still need to incorporate them into the report model and...
- 01:40 PM Bug #3638: Report design features, Stage 2
- I believe section headers are a must for this 2a1 release.
Headers and footers are more or less already there (the co... - 01:42 PM Bug #4159 (Resolved): Cut 2.0-alpha/SanParks release
- Tasks:
* Cut the release (tag)
* Create installers for mac, windows, linux
* test all 2.0-alpha targeted functi... - 01:36 PM Bug #3635: Create ReportItem Type Hierarchy
- not a 2a1-critical bug. leaving in sanparks release
- 01:35 PM Bug #3632: TPC exceedence notification feature
- for 2a1 release - we'll be using a "special" report item that will identify a TPC as being Normal or Exceeded. This n...
- 01:33 PM Bug #3996: Report Model - [de]serialize Items of Interest
- still advocating for shifting our efforts toward an Outline-view-based approach to items of interest.
Leaving this ou... - 01:32 PM Bug #3995: Report Model - [de]serialize Report Item properties
- item properties are being handled as expected
- 01:31 PM Bug #4000: WRP - upload PRAs to repository
- this overlaps with the KAR upload. almost entirely. maybe even entirely
- 01:26 PM Bug #4148: Workflow Run Manager - Upload to Repository feature
- crucial for the 2a1 release
- 01:25 PM Bug #4036: WRM - connect to configurable provenance store
- retarget for release. sounds as though it can be closed [soon].
- 11:37 AM Bug #4144: Workflow Run Manager - moving columns / new windows bug
- Fixed in r19238. Refactored to rely on natural jtable mechanisms for tracking movement.
- 11:21 AM Bug #4101: Report Designer - Create a manager class for the Static Report Items
- The manager class has been added, though it is likely to need to need additional enhancements. The SWING components ...
06/14/2009
- 09:14 AM Bug #4002: RExpression2 - handle arbitrary R data structures
- added handling (from the old RExpression1 implementation) for [un]serializing complex R data objects to disk.
This is...
06/12/2009
- 07:53 PM Bug #4147: Error message with selectable text
- Fixed!
- 07:53 PM Bug #4147: Error message with selectable text
- I'm lowering the priority of this and changing it to an enhancement because
the code works as expected.
I agree that ... - 02:25 PM Bug #4020: WRP - create WorkflowRun object to encapsulate provenance/report instances
- Thanks for the help Dan. I'm changing the _elementName of WorkflowRun to be property instead of entity (this probably...
- 10:54 AM Bug #4020: WRP - create WorkflowRun object to encapsulate provenance/report instances
- I'm currently getting errors parsing the WorkflowRun moml back from disk using momlparser, and am looking into it.
A... - 02:14 PM Bug #4034: "Invalid memory access" when running workflow from the command line
- This bug is no longer occurring on the Mac with either kepler.sh or with 'ant run-workflow.' However, kepler.sh does ...
- 01:50 PM Bug #4034: "Invalid memory access" when running workflow from the command line
- Run the 'ant starupt-script' command to build the kepler.sh file. Not sure if this is still a bug with the new scrip...
- 01:40 PM Bug #4034: "Invalid memory access" when running workflow from the command line
- Does kepler.sh even exist anymore? I am not finding it in any of the modules I have downloaded. I cannot reproduce th...
- 02:04 PM Bug #4153 (In Progress): report-overrides
- "ant report-overrides" build target does not include xml files (such as config.xml or configuration.xml).
- 01:59 PM Bug #4152: Modules should be able to add environment variables to the runtime
- Added the ability to the build system to parse a $module/module-info/environment.txt file. This file lists the envir...
- 01:53 PM Bug #4152: Modules should be able to add environment variables to the runtime
- You can, in fact, add env vars to the runtime. We do it for the PATH variable (for JNI on windows). I'm implementin...
- 01:50 PM Bug #4152: Modules should be able to add environment variables to the runtime
- In Java 1.5 and later the java.lang.System.getEnv() method returns
environment variables.
The Javadoc for getEnv() ... - 01:48 PM Bug #4152: Modules should be able to add environment variables to the runtime
- Right. It is distinct because it actually needs to load an environment variable.
- 01:16 PM Bug #4152: Modules should be able to add environment variables to the runtime
- Just so I understand this correctly, this is a distinct use case from setting System properties, correct? So, if you ...
- 01:09 PM Bug #4152 (Resolved): Modules should be able to add environment variables to the runtime
- Modules such as R sometimes need to add environment variables to the runtime. R needs the R_HOME variable set in ord...
- 01:40 PM Bug #4040: make a new module called globus to host globus actors and needed packages.
- The old actors are being tested with globus environments, new globus actors are also being implemented and tested.
- 01:30 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
- Forgot to close the bug with the last comment.
- 01:30 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
- This functionality is now fully implemented.
- 01:29 PM Bug #4108: Do more extenstive testing before designating a revision of Ptolemy as stable
- I am not sure that more extensive testing is really necessary. There have been very few developer problems associated...
- 01:28 PM Bug #4090: You should be able to specify a particular revision number or date with ant update.
- You can now specify not only a particular revision, but also a particular date as well. This is documented in the bui...
- 01:27 PM Bug #4089: Ensure that module-manager, loader, and the build system all work with a new versioning system for modules.
- All of these systems now work with the new versioning system.
- 01:25 PM Bug #4088: Create new configuration system
- I am working on the configuration system now. It will be done post Sans Park release.
- 01:23 PM Bug #3947: Create a module manager
- The module manager now works adequately for the purposes of the Sans Parks and 2.0 releases. I am closing this bug.
- 12:25 PM Bug #4151: exported RIO and ROML doc run-pairs have same KeplerLSID
- now generating a new LSID when the reportInstance is assembled from provenance data
- 12:05 PM Bug #4151 (Resolved): exported RIO and ROML doc run-pairs have same KeplerLSID
- Exported RIO and ROML doc run-pairs have the same KeplerLSID. Try exporting a run from the WRM and then open up the k...
- 11:41 AM Bug #4087: No reset/x button to clear component searches
- No objections on this proposal, so I plan to do it once many more important tasks are complete.
- 11:39 AM Bug #4150 (Resolved): Save in Library broken
- Save in Library is giving me problems:
[run] Exception occurred during event dispatching:
[run] java.... - 11:32 AM Bug #4047: Remove Component doesn't work
- This is broken again.
[run] java.io.InvalidClassException: org.kepler.kar.KARFile; no valid constructor
[... - 11:22 AM Bug #4149 (Resolved): Workflow Run Manager - Export Runs feature
- WRM needs to be able to Export Runs from a gui context menu, or without a gui by just accepting a list of run lsids. ...
- 11:16 AM Bug #4148: Workflow Run Manager - Upload to Repository feature
- This also needs to be able to work without a gui, hopefully by just requiring a list of keplerlsids of runs to upload.
- 11:14 AM Bug #4148: Workflow Run Manager - Upload to Repository feature
- That should read: "We also need to change to using setAccess".
- 11:10 AM Bug #4148 (Resolved): Workflow Run Manager - Upload to Repository feature
- WRM needs to be able to upload runs to the repository. A user selects rows in the WRM and from a context menu clicks ...
06/11/2009
- 01:29 PM Bug #4147: Error message with selectable text
- Ah, I never noticed you could get the text from the Stack Trace.
- 01:14 PM Bug #4147: Error message with selectable text
- This would likely be an issue with the Ptolemy Query widget in ptolemy.gui.
I tend not to see this because most erro... - 11:38 AM Bug #4147 (Resolved): Error message with selectable text
- When Kepler displays an error message in the pop-up dialog, the text is not selectable so I can copy-paste it into an...
- 10:00 AM Bug #3238: Refactor NMI build
- The NMI build has been refactored and is working. Any suite can now have a build via the NMI task in the build. Clo...
- 09:50 AM Bug #4061: Documentation links are not active
- Fixed. The documentation is now copied into the installer unless copyDocumentation is set to false.
- 08:36 AM Bug #4143: "change failed" error while copy/paste-ing an ImageJ actor
- Fixed checking to see if the parent directory exists before creating
the file. I fixed this in IJMacro, ImageJActor ...
06/10/2009
- 09:15 PM Bug #4143: "change failed" error while copy/paste-ing an ImageJ actor
- I can replicate this under Mac OS X. (thanks for the sample demo, it is a bi
big help)
The stacktrace I get when I p... - 12:53 PM Bug #4065: Copy documentation into installer
- the installer now copies the documentation into the installer. closing this bug.
- 07:32 AM Bug #3951: Report Viewer - improve TOC panel
- now updating the TOC when the report instance in the viewer is updated/refreshed
06/09/2009
- 06:32 PM Bug #4144 (Resolved): Workflow Run Manager - moving columns / new windows bug
- WRM - if you move a column, then open a new kepler window, there are problems with column and headers being out of or...
- 04:22 PM Bug #4143: "change failed" error while copy/paste-ing an ImageJ actor
- Copy/paste the ImageJ actor creates an error.
- 04:21 PM Bug #4143 (Resolved): "change failed" error while copy/paste-ing an ImageJ actor
- This seems to affect only Windows systems and has to do with saved values in the fileOrURL parameter in the ImageJ ac...
- 03:14 PM Bug #2261: DIALOGS: Implement New "Advanced Search for Data" Dialog
- I propose to take over this old bug -- REAP requires an Advanced Search dialog that allows a user to select a region ...
- 01:30 PM Bug #4141: EML 2 Dataset breaks when data table has 2 columns with the same name
- Even with "As Field" and "As Column Vector" we only nd up with a single port for the Stem_pattern column (even though...
- 12:26 PM Bug #4141: EML 2 Dataset breaks when data table has 2 columns with the same name
- This has already been raised for the Kruger datasets. Isn't there already code to append actor names with a number? ...
- 12:15 PM Bug #4141: EML 2 Dataset breaks when data table has 2 columns with the same name
- This makes some sense: EML allows the names to be the same. A RecordToken cannot have two records with the same name....
- 11:56 AM Bug #4141 (Resolved): EML 2 Dataset breaks when data table has 2 columns with the same name
- I am observing this problem with WoodyVCAtreesincirclea.txt in judithk.769.20, although this dataset requires authent...
- 12:32 PM Bug #4132: Workflow Run Manager - Open in New Window is just opening the workflow, not the ROML or report
- We can open the ROML - that'll make sense. Not sure how we would want to "open the report" - right now that UI is bas...
- 12:10 PM Bug #4142: EML 2 Dataset caches restricted datasets, allows access across sessions
- this is known behavior. as you say there is a certain "oh, really?" factor to it. I've marked to revisit at a "LATER"...
- 12:05 PM Bug #4142 (Resolved): EML 2 Dataset caches restricted datasets, allows access across sessions
- I authenticated to search and add an EML 2 Dataset actor for a restricted data table. If I save the workflow, close ...
- 11:59 AM Bug #4119: Report Model - use LSID to link layout to workflow
- will continue to use the WorkflowManager (for sanparks).
Using LSID for the linkage - that's a win! - 11:09 AM Bug #3238: Refactor NMI build
- I've created a new build task 'nmi' to build an NMI configuration for any given suite. It works like this:
You run ... - 11:08 AM Bug #4140 (Resolved): Workflow Run Manager - delete runs functionality needs to be written
- WRM - Delete run(s) functionality needs to be written. Argument: list of lsids
- 10:07 AM Bug #4022: undesired file:\ prefix added by FileParameter
- A Ptolemy model that uses a FileParameter that works for me.
I can't reproduce this bug in Kepler, in part because I...
06/08/2009
- 07:36 PM Bug #4139: port names are displayed twice
- As a clarification, this only seems to occur in the top-level of the workflow in bug 4129 (http://bugzilla.ecoinforma...
- 07:20 PM Bug #4139 (In Progress): port names are displayed twice
- When I choose to show port names, they are displayed once next to the port as expected and once in the upper left cor...
- 06:30 PM Bug #4022: undesired file:\ prefix added by FileParameter
- In Windows, it does prepend a "file:/" before the "C:/", which is slightly different from the OS X and linux behavior...
- 06:05 PM Bug #4022: undesired file:\ prefix added by FileParameter
- I can confirm this with 1.x dev under OS X and linux. It occurs when the file being selected by the chooser is both ...
- 01:50 PM Bug #4129: "unable to parse the metadata: null" with dataset judithk.306.21
- i said i'd look at this...
- 01:10 PM Bug #4138 (New): Workflow Run Manager - search cell edit focus isn't lost appropriately
- WRM - For the most part, if you click on something else in Kepler while editing a WRM search cell, the cell inappropr...
- 01:06 PM Bug #4137 (New): Workflow Run Manager - resizing width of column while in edit mode of search cell does not resize edit field
- WRM - resizing width of column while in edit mode of search cell does not resize edit field. It should, it looks stra...
- 01:02 PM Bug #4136 (Resolved): Workflow Run Manager - date and duration search should allow single operator-less arguments
- WRM - the user should be able to enter a single date or duration without an operator (operators are currently: >, <)....
- 12:56 PM Bug #4135 (Resolved): Workflow Run Manager - default sorting (by date) should be applied
- WRM - by default the runs have no sorting applied.
It would be more intuitive to sort by date by default (probably ... - 12:54 PM Bug #4134 (Resolved): Workflow Run Manager - double clicking on search cell shouldn't sort column
- WRM - double clicking on a search cell column header also causes a sort. This is pretty annoying.
- 12:47 PM Bug #4133 (Resolved): Workflow Run Manager - column widths should be size appropriately
- WRM column widths should be sized more appropriately by default, e.g. giving the date and duration columns enough roo...
- 12:44 PM Bug #4132 (New): Workflow Run Manager - Open in New Window is just opening the workflow, not the ROML or report
- Open in New Window should open not just the workflow, but the roml and report (anything else?).
- 12:43 PM Bug #4131 (New): Workflow Run Manager - Open in New Window allows opening same wf multiple times
- You can currently Open in New Window the same workflow from the WRM multiple times (i.e. into new Kepler windows). Th...
- 12:39 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
- Change referred to in #20 have been checked in.
This bug's become huge, going to create separate bugs that block this... - 11:39 AM Bug #3635: Create ReportItem Type Hierarchy
- I think it will be very useful to make StaticReportItem subclasses - if only to make rendering them in the UI more st...
- 11:34 AM Bug #3998: Report Viewer - render Report Instance on???Event
- when the view changes, an event is fired and the viewer is now listening/responding that that event.
- 11:33 AM Bug #3647: Create Report Assembler
- the assembler is in place.
it's up to the various Item subclasses to get their values when needed. - 11:29 AM Bug #4020: WRP - create WorkflowRun object to encapsulate provenance/report instances
- We're now using a WorkflowRun object (subclass of NamedObj) to store the run provenance metadata. This moml snippet i...
- 11:26 AM Bug #4001: WRP - Save/Open KARs containing MOMLs and ROMLs
- created ReportLayoutKAREntryHandler for writing ROML to the KAR when it's associated workflow is saved as a KAR.
simi...
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