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From 04/09/2009 to 05/08/2009

05/08/2009

09:22 AM Bug #4057: UserInteractiveShell message
I think you need to use an InitializableDelay.
UserInteractiveShell is based on InteractiveShell, for a sample
use, ...
Christopher Brooks
07:46 AM Bug #4057 (New): UserInteractiveShell message
The message in the UserInteractiveShell doesn't make sense, and gives a "null" at the beginning.
Here is the curre...
Chris Weed

05/05/2009

06:00 PM Bug #4056 (New): create developer documentation for svn configuration.
When svn checks in files, it checks them in using a binary mode.
This is a problem when files are checked in using w...
Christopher Brooks
04:40 PM Bug #3949: Get the installer working with the new build system
Added functionality to the installer build task that allows it to pull in custom packs from modules. To use this, pu... Chad Berkley
01:33 PM Bug #4039: matlab actor always stops matlab process in wrapup
In order for the matlab process to persist after model execution, an engine cannot be opened in an actor's thread.
h...
Daniel Crawl
10:45 AM Bug #4010: RExpression2 - tracking for backwards compatibility
ReadTable.xml
there's a issue with how I'm setting up the graphics device. it's purely my R code, since the followin...
ben leinfelder
09:50 AM Bug #3985: Types resolved to unacceptable types
It seems like the error is thrown before R even runs, in which case it probably wouldn't be a problem with R itself. ... Oliver Soong
08:36 AM Bug #4022: undesired file:\ prefix added by FileParameter
I have this problem using version 1.0.0 and on both XP and Vista. At first after you said you can't reproduce it I tr... Tommy Tommy

05/04/2009

07:54 PM Bug #4055 (Resolved): leftover cachedata files
It seems that after data has been searched there are some left over data files in the .kepler/cache/cachedata directo... Aaron Aaron
07:12 PM Bug #4049: Import actor that already exists appends strange numbering scheme
I've checked in a fix, but am leaving this open and changing to a feature request -- see if there's a better way to g... Derik Barseghian
04:15 PM Bug #4049: Import actor that already exists appends strange numbering scheme
I should've been more clear, this is using the Kepler File => Import Archive (KAR) menu item and then looking at the ... Derik Barseghian
04:07 PM Bug #4049: Import actor that already exists appends strange numbering scheme
I'm not sure how to reproduce this.
Doing Tools -> Instantiate Component over and over again creates
Ramp
Ramp2
Ramp3...
Christopher Brooks
05:46 PM Bug #4054: DataTurbine tree actor icon should be a can
fixed. Derik Barseghian
05:30 PM Bug #4054 (Resolved): DataTurbine tree actor icon should be a can
The small icon in the actor tree representing the DataTurbine actor should be a can, not the generic square. Derik Barseghian
05:19 PM Bug #4047: Remove Component doesn't work
I've fixed this problem.
However the behavior should be improved, and so I'm changing this bug to a request for enha...
Derik Barseghian
12:54 PM Bug #4047: Remove Component doesn't work
When you Remove Component, this error appears: "Error in getting actor in ShowDocumentationAction", and the actor sta... Derik Barseghian
04:39 PM Bug #3985: Types resolved to unacceptable types
I downloaded this from
http://www.nceas.ucsb.edu/~soong/kepler/Unacceptable%20Types%20Problem.xml
and am uploading it...
Christopher Brooks
04:21 PM Bug #4022: undesired file:\ prefix added by FileParameter
I can't reproduce this, the attached demo works as it should.
Is there a test case?
BTW - URL.toString() changed bet...
Christopher Brooks
03:47 PM Bug #4053: deleting open composite actor may delete model
This is reproducible in Ptolemy.
The issue is that if a model has a composite and the composite is open,
what happens...
Christopher Brooks
03:01 PM Bug #4053 (Resolved): deleting open composite actor may delete model
Under certain circumstances, deleting an open composite actor may result in deleting the remainder of the model. Here... Daniel Crawl
03:40 PM Bug #4050: dragging actors can leave artifacts until you stop dragging
The trail of visual artifacts issue was fixed by modifying KeplerGraphTableau to
extend Tableau and then modifying Wo...
Christopher Brooks
12:41 PM Bug #4050: dragging actors can leave artifacts until you stop dragging
I can replicate this with Display and XYPlotter actors, they both leave vertical
green lines when dragged to the left...
Christopher Brooks
03:37 PM Bug #2321: merge exp files into ptolemy CVS
I'm closing this.
The highlight issue was fixed by modifying KeplerGraphTableau to extend Tableau
and then modifying ...
Christopher Brooks
10:06 AM Bug #2321: merge exp files into ptolemy CVS
There are selection and highlighting issues that should be addressed before
this bug is closed.
Christopher Brooks
03:23 PM Bug #4017: Make sure module manager and installer work together wrt the classpath
The module manager and installer both use the same bootstrapper to build the classpath. All build classes that launc... Chad Berkley
03:14 PM Bug #3809: jni actors do not work
JNI actors now work with both the installed and the ant-executed versions of kepler. The java.library.path is also a... Chad Berkley
03:09 PM Bug #4010: RExpression2 - tracking for backwards compatibility
FIXED:
RExpression_Matrix_IO_Test.xml
-matrices now handled like R wants them to be (column-major)
ben leinfelder
02:50 PM Bug #4052 (New): Should be able to store native libraries in a kar file
A kar file should be able to contain native libraries needed for a given actor. These libraries should be loaded at ... Chad Berkley
02:48 PM Bug #3074: Code library installation issues
libraries can now be stored in the lib directory of any module. This should allow individual modules to be able to l... Chad Berkley
10:34 AM Bug #3074: Code library installation issues
Kepler no longer relies upon installation of dlls into system32. the path variable is changed at runtime and the dll... Chad Berkley
01:20 PM Bug #4051 (Resolved): R - include R distribution in separate module
Instead of including the R dist in the core Kepler module, we want to have it in a separate module so that upgrades t... ben leinfelder
12:42 PM Bug #3593: exporting an actor to kar does not save portparameters that have been defined
Closing, seems fine. Derik Barseghian
12:02 PM Bug #3593: exporting an actor to kar does not save portparameters that have been defined
This dates back to kommineni, r12215: "addAttribute method has been changed to eliminate duplicate entries in moml fi... Derik Barseghian
11:34 AM Bug #4029: missing dependency for tools.jar in windows
Fixed in
https://kepler-project.org/developers/reference/kepler-and-eclipse
https://kepler-project.org/developers/te...
Christopher Brooks
11:29 AM Bug #4028: Nondeterministic Merge Actor doesn't generate output
Solved the bug by reverting the change made in version 53061 (which was committed with message "Eclipse: removed unus... Bert Rodiers
11:25 AM Bug #4028: Nondeterministic Merge Actor doesn't generate output
53042 version of NondeterministicMerge works for me. Thanks for your work. jianwu jianwu
11:14 AM Bug #4028: Nondeterministic Merge Actor doesn't generate output
Does your model work if you revert the version of NondeterministicMerge back to 53042? In the next modification in th... Bert Rodiers
11:10 AM Bug #3999: WRP - create event-driven states for Kepler
TODO: design document. ben leinfelder
10:52 AM Bug #3999: WRP - create event-driven states for Kepler
Added Morpho-based "event-state" module to be use for communicating between tabs/views.
Likely need modifications to ...
ben leinfelder
10:56 AM Bug #3931: Get the R actor working with JNI
The more I/We work with the RNI implementation of this actor, I believe we'll need to seriously consider using some o... ben leinfelder
10:32 AM Bug #3097: incorrect classpath in generated ptexecute.sh and momlexecute.sh
Execution now pauses. Will break "- MoMLSimpleApplication does not filter Display actor or any GUI Kepler actors." i... Chad Berkley

05/01/2009

06:01 PM Bug #3593: exporting an actor to kar does not save portparameters that have been defined
Checked in a fix.
We were intentionally skipping adding PortParameters when exporting to an actor kar. Does anyone ...
Derik Barseghian
03:21 PM Bug #3593: exporting an actor to kar does not save portparameters that have been defined
I note that when I set a portparameter in an actor within a composite, and then export the composite, the value is sa... Derik Barseghian
04:03 PM Bug #4050 (Resolved): dragging actors can leave artifacts until you stop dragging
Dragging some actors leaves visual artifacts until you stop dragging. The color of the artifacts seems to match the a... Derik Barseghian
03:37 PM Bug #4049 (New): Import actor that already exists appends strange numbering scheme
When I import an actor that already exists, saying Yes to use the next available id, the new actor appends a numberin... Derik Barseghian
03:30 PM Bug #3242: dlls should not go in c:/Windows/System32
Fixed this by allowing the bootstrapper to modify the PATH env variable at runtime. While the java.library.path vari... Chad Berkley
02:09 PM Bug #3242: dlls should not go in c:/Windows/System32
After re-reading the jguru thread that christopher posted, I added common/lib to the PATH in windows and now there is... Chad Berkley
02:00 PM Bug #3242: dlls should not go in c:/Windows/System32
On windows XP, if the dlls are not in the System32 directory, I get the following error:
ptolemy.kernel.util.Illegal...
Chad Berkley
02:51 PM Bug #2321: merge exp files into ptolemy CVS

Hi Chad, I am currently under the impression that it would be a substantial effort to open multiple actor canvases i...
Aaron Aaron
02:34 PM Bug #2321: merge exp files into ptolemy CVS
Enabling multiple tabs to be opened in one window is a feature we already identified and mocked up as part of the rep... Matt Jones
01:08 PM Bug #2321: merge exp files into ptolemy CVS
Just noticed something weird about this. If you draw a rubber-band box around the actors, the selection is shown, bu... Chad Berkley
02:34 PM Bug #4048 (New): Get error message when too much code in single R actor
I have an R actor that has quite a few lines of code. It seems that when I have more than 3,224 (I think) characters ... Tommy Tommy
01:42 PM Bug #4047 (Resolved): Remove Component doesn't work
Right click an actor in library, Remove Component doesn't remove it from the tree. Derik Barseghian
01:05 PM Bug #4046 (New): ComadTest should report more details when detecting an error
The ComadTest actor is used to create automated tests of COMAD features. Because it is often useful to include sever... Timothy McPhillips

04/30/2009

06:17 PM Bug #3691: JButton labels truncated on macOSX
Good point, I haven't seen any others so far. If anyone sees any other button label truncation please report here. Derik Barseghian
05:53 PM Bug #3691: JButton labels truncated on macOSX
Looks great to me, Derik.
By the way, is this the only place where button labels were truncated, or are there othe...
Matt Jones
05:51 PM Bug #3691: JButton labels truncated on macOSX
I'll leave this open for now until others have had a chance to see the new ui and possibly object. Derik Barseghian
05:48 PM Bug #3691: JButton labels truncated on macOSX
I've checked in a fix; I made the buttons 11px bigger. I've removed some other spacing trying to minimize the widenin... Derik Barseghian
05:05 PM Bug #2569: Popup (context) menu do not appear for relations and connections
Fixed by editing
common/configs/ptolemy/configs/kepler/uiContextMenuMappings_en_US.properties
The way to fix these i...
Christopher Brooks
04:54 PM Bug #3932: Configure Actor actor context menu item missing
Fixed by editing
common/configs/ptolemy/configs/kepler/uiContextMenuMappings_en_US.properties
Added comment about deb...
Christopher Brooks
10:28 AM Bug #4041 (New): synchronization in matlab actor
The matlab actor starts a new matlab process in preinitialize and closes it in wrapup. Each instance of the actor in ... Daniel Crawl
10:05 AM Bug #2321: merge exp files into ptolemy CVS
I've made changes and removed util/src/ptolemy.
One remaining issue is ActorGraphFrame, see the discussion below.
I'v...
Christopher Brooks
10:04 AM Bug #4040 (New): make a new module called globus to host globus actors and needed packages.
we have duplicate globus libs in current build system: common\etc\cog\, util\lib\jar\globus\lib, util\lib\jar\globus\... jianwu jianwu
09:58 AM Bug #2363: Move Actions out of BasicGraphController
I'm closing this, I created
util/src/org/kepler/gui/SemanticSearchDialogAction.java
util/src/org/kepler/gui/WorkflowT...
Christopher Brooks
09:54 AM Bug #4039 (New): matlab actor always stops matlab process in wrapup
The matlab actor always stops the matlab process when model execution ends. It would be nice if the actor could (opti... Daniel Crawl
09:33 AM Bug #4038: The first time ant change-to is run, it prints a stack trace
I'm also seeing this behavior. It looks like it's trying to read the modules.txt file before it gets checked out. Chad Berkley
09:09 AM Bug #4038 (Resolved): The first time ant change-to is run, it prints a stack trace
The first time I run ant change-to under Windows, I get:
change-to:
[change-to] java.io.FileNotFoundException: c:...
Christopher Brooks
09:15 AM Bug #3988: Rectangle shifts position on resize
I'm closing this, my solution was to modify the configuration
so that new RectangleAttributes are created with center...
Christopher Brooks

04/29/2009

06:24 PM Bug #4034: "Invalid memory access" when running workflow from the command line
re-assigning to David - maybe he can shed some light on what might be happening.
(Unfortunately it seems like it migh...
ben leinfelder
06:08 PM Bug #4034: "Invalid memory access" when running workflow from the command line
This same error occurs when we use the "run-workflow" ant target:
$> ant run-workflow -Dworkflow=../common/demos/gett...
ben leinfelder
06:00 PM Bug #4034: "Invalid memory access" when running workflow from the command line
removing the call to the EcogridService does not fix the invalid memory error. This doesn't have to do with that serv... ben leinfelder
04:04 PM Bug #4034: "Invalid memory access" when running workflow from the command line
reverting to an older org.ecoinformatics.ecogrid.RegistryService-stub.jar version did not work (still had the same er... ben leinfelder
02:52 PM Bug #4034 (Resolved): "Invalid memory access" when running workflow from the command line
When running even very simple workflows from the command line, Kepler fails with the following output. For some reas... Chad Berkley
05:16 PM Bug #3332: RExpression_Matrix_IO_Test workflow gives an error
Yep, I no longer see this bug on either Mac or Linux, closing. Derik Barseghian
05:09 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
You can rearrange columns now and they'll stay in sync with the search header.
Column specific default text now works...
Derik Barseghian
03:18 PM Bug #4037 (Resolved): WRM - connect to Kepler-wide configurable provenance store
This is Phase 2 for the WRM interface:
-Add a Kepler-wide provenance configuration. The intent is that the WRM inter...
ben leinfelder
03:11 PM Bug #4036 (Resolved): WRM - connect to configurable provenance store
Currently the WRM viewer connects to the default provenance store specified in a .properties bundle in the WRM module... ben leinfelder
03:06 PM Bug #4035: MoMLSimpleApplication does not filter Display actor or any GUI Kepler actors.
See bug 3097 for the provenance of this bug. Chad Berkley
03:05 PM Bug #4035 (New): MoMLSimpleApplication does not filter Display actor or any GUI Kepler actors.
When you run a -nogui kepler run, MoMLSimpleApplication should have the ability to filter some of the gui elements in... Chad Berkley
03:03 PM Bug #3097: incorrect classpath in generated ptexecute.sh and momlexecute.sh
Update:
>2. (from comment #6) pause before exiting when running with '-gui'.
I'm looking into this now. I'm not ex...
Chad Berkley
02:58 PM Bug #3634: Define the interface between Provenance and Reporting
we have this look up implemented now - closing ben leinfelder
02:56 PM Bug #3949: Get the installer working with the new build system
Since R is now in its own module, the installer not only has to have the option to install R, but also to install the... Chad Berkley
02:53 PM Bug #3990: Include "workflow-run-manager" module in "wrp" suite
closing this - now running with the real WRM in the "wrp" module ben leinfelder
01:58 PM Bug #3990: Include "workflow-run-manager" module in "wrp" suite
I've removed the [placeholder] WRM screen from reporting's config and module.
I've added the WRM module to the wrp su...
ben leinfelder
02:27 AM Bug #4033: Can't compile, MakeKars not found
Fixed. David Welker

04/28/2009

08:48 PM Bug #2321: merge exp files into ptolemy CVS
Open Actor and Convert to Class are in the actor context menu for me
in a clean checkout, after
mkdir kepler
cd kepl...
Christopher Brooks
07:22 PM Bug #4033 (Resolved): Can't compile, MakeKars not found
I can't get the head to build, and the compiler is complaining it can't find MakeKars. Revision 17442 will compile, ... Oliver Soong
12:51 PM Bug #3998: Report Viewer - render Report Instance on???Event
I've got the "event-state" module in Kepler now. It's based on the Morpho event management classes.
The "test" button...
ben leinfelder
12:01 PM Bug #3986: RExpression confounding R working directory and .kepler folder
we might consider removing this parameter since it's not really useful and will loose any utility it provides once we... ben leinfelder
11:56 AM Bug #3986: RExpression confounding R working directory and .kepler folder
I was under the impression the R working directory (Rwd) was a parameter to set the working directory of the R actor,... Oliver Soong
11:58 AM Bug #4026: Bootstrapper will not run kepler in a directory with spaces
This was actually a problem with the lib path, not the classpath. The classpath is handled internally by the Java an... Chad Berkley

04/27/2009

07:03 PM Bug #4025: XSLTActor accepts StringToken as input
The input port can now read either xml or string tokens. Daniel Crawl
07:02 PM Bug #3970: XSLT unnecessarily writes to a file
XSLTActor no longer writes the output to a temporary file. Daniel Crawl
07:01 PM Bug #3968: XSLTActor temporary file bug
XSLTActor no longer writes the input XML to a temporary file. Daniel Crawl
04:04 PM Bug #3332: RExpression_Matrix_IO_Test workflow gives an error
Derik - are you still seeing this bug?
I do not encounter the parsing error ("4L" etc...)
I believe we changed some t...
ben leinfelder
03:42 PM Bug #3986: RExpression confounding R working directory and .kepler folder
i see that it fails until you game the type lattice, but afterward I believe this functions as designed.
The "R worki...
ben leinfelder
02:20 PM Bug #2321: merge exp files into ptolemy CVS
After the merge of ActorController, Open Actor and Convert to Class are no longer in the context menu for actors. Daniel Crawl
08:51 AM Bug #2321: merge exp files into ptolemy CVS
ptolemy/vergil/actor/ActorController.java has been updated.
A ListenToActor action was added to the version in the pt...
Christopher Brooks
12:29 PM Bug #4029 (Resolved): missing dependency for tools.jar in windows
The documentation fails to mention the need for a dependency on tools.jar in setting up building Kepler with Eclipse ... Chris Weed
12:01 PM Bug #3739: Issues in inferring data lineage via the provenance recorder
1, 2: version 8 of the schema explicitly includes token dependencies, and can be queried using the Queryable interfac... Daniel Crawl
10:34 AM Bug #3649: determine if Provenance has everything needed by Reporting
Derik and I were talking about how the schema could accommodate more than just the MOML file. Currently there is a co... ben leinfelder
10:19 AM Bug #2315: Unable to run multiple Kepler instances simultaneously
set the error writer for the DB server to null unless debug log level is enabled.
this prevents the stacktrace from s...
ben leinfelder
10:17 AM Bug #3917: refactor schema creation code out of recording classes
Schema creation code has been separated. Daniel Crawl

04/25/2009

05:45 PM Bug #4028: Nondeterministic Merge Actor doesn't generate output
The change after 52467 is:
2009-02-25 16:20 rodiers
> * [r52468]
> /trunk/ptolemy/domains/pn/kernel/Nondetermini...
Christopher Brooks
04:03 PM Bug #4028 (Resolved): Nondeterministic Merge Actor doesn't generate output
My workflow that used to work but does not work now. Finally I found out it is because I can not get output the Nonde... jianwu jianwu
04:27 PM Bug #3988: Rectangle shifts position on resize
I might have this one fixed, Edward may have some comments.
It turns out that RectangleAttribute and ResizablePolygo...
Christopher Brooks
02:13 PM Bug #2315: Unable to run multiple Kepler instances simultaneously
When I run two instances of Kepler using "ant run", I see the message:
[run] Building Kars...
[run] [Serve...
Christopher Brooks
01:19 PM Bug #3128: Kepler devel tree can't be compiled in java 1.6.0: DBConnection problem
DBConnection has been removed since it provided trivial functionality.
Kepler now compiles with java 1.6.
Daniel Crawl
12:25 PM Bug #3363: Show name checkbox does nothing for most Parameters
Fixed!
The solution here was to edit ptolemy/actor/gui/RenameConfigurer.java
and not add the "Show name" checkbox if ...
Christopher Brooks
10:07 AM Bug #3984: RequireVersion parameter cannot be deleted from a saved workflow
Fixed!
The problem was that it was not possible to delete a RequireVersion Attribute
from a saved model. One could a...
Christopher Brooks

04/24/2009

05:05 PM Bug #3939: Kepler Unique LSID Namespace generation
To test out getting a unique namespace from the test Authority Namespace service, delete the InstanceAuthNamespace fi... Aaron Aaron
05:04 PM Bug #3939: Kepler Unique LSID Namespace generation

The following requirements have been implemented:
-----------------------
A Kepler instance always has a unique auth...
Aaron Aaron
04:46 PM Bug #3967: Unable to run java -jar kepler-trunk.jar with -nogui -nocache -runwf fullworkflowpath options
There are now two ways to do this. On the installed version of kepler, you can use the kepler.sh or kepler.bat files... Chad Berkley
04:44 PM Bug #3483: case sensitive Leopard install fails
The installer is now performing a case-sensitive install and I have made sure to use correct case on all files being ... Chad Berkley
04:42 PM Bug #3369: Kepler will not start (OS X 10.52) as JavaApplicationStub is not executable
Fixed with the new installer code. The installer now makes sure that JavaApplicationStub is executable when it insta... Chad Berkley
04:40 PM Bug #3949: Get the installer working with the new build system
David created a bootstrapper that launches kepler and builds the classpath dynamically. The installer now makes full... Chad Berkley
04:39 PM Bug #3097: incorrect classpath in generated ptexecute.sh and momlexecute.sh
Created a new task 'ant startupScript' which generates 4 scripts to start kepler. kepler.sh, kepler.bat, kepler.exe ... Chad Berkley
02:27 PM Bug #3586: COMAD traces should be reproducible when there is limited concurrency
This feature is now complete. Traces rendered by CollectionDisplay, TraceWriter, and ComadTest now can produce repea... Timothy McPhillips
12:32 PM Bug #4014: Remove "include class" checkbox in export kar dialog
commented out the dialog. ben leinfelder
12:28 PM Bug #4014: Remove "include class" checkbox in export kar dialog
This is not a checkbox - it is a JOptionPane dialog with the prompt:
"Would you like to save the actor's class file w...
ben leinfelder
11:29 AM Bug #4026 (Resolved): Bootstrapper will not run kepler in a directory with spaces
When the bootstrapper is run, it generates the classpath based on where the kepler directory is. If this location in... Chad Berkley
06:45 AM Bug #4025 (Resolved): XSLTActor accepts StringToken as input
The input to the XSLTActor (org.sdm.spa.XSLTActor) is XML, which should be passed in as an XMLToken. However, the XSL... Chris Weed

04/23/2009

04:53 PM Bug #3934: Report Designer - editable Report Title field
The text I enter in the Text Field does not seem to be present in the ReportLayout object that I get from the Workflo... ben leinfelder
04:03 PM Bug #4022 (Resolved): undesired file:\ prefix added by FileParameter
User reports "file:\" being prefixed to paths when using FileParameter to refer to files in same directory as workflo... Derik Barseghian
03:54 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
Duration search has been mostly implemented and is now usable. Like date, it still needs single-duration operator-les... Derik Barseghian
03:48 PM Bug #3925: ant run does not always work from paths with spaces
I notice similar problem while running java -jar kepler-trunk.jar on Windows machine. When installation folder is on ... Madhusudan Gujral
10:39 AM Bug #3986: RExpression confounding R working directory and .kepler folder
retarget and reassign to myself
(hunch is that working directory hasn't been "working" in a while since it subverts t...
ben leinfelder
09:35 AM Bug #4021 (Resolved): KAREntry Handler
This is a somewhat amorphous topic for me (ben) - but I wanted to make a place holder for it. Hopefully we can flesh ... ben leinfelder
08:45 AM Bug #4020 (Resolved): WRP - create WorkflowRun object to encapsulate provenance/report instances
We've got a "Workflow" object that allows us to keep track of Workflow models (MOML) and Report Layouts (ROML). We ne... ben leinfelder

04/22/2009

05:37 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
Workflow, Date and User columns have been tied to search and work pretty well now, though single-date-operator-less s... Derik Barseghian
03:56 PM Bug #4019 (Resolved): Workflow View in left pane
A view tab in the left pane that displays workflows would be very useful. It would either allow a user to drag a wor... Chad Berkley
03:54 PM Bug #4018 (Resolved): Remove non-2.0 functionality from 2.0 release
Make sure any functionality not on the 2.0 release list is removed prior to creating the final installers. Chad Berkley
03:53 PM Bug #4017 (Resolved): Make sure module manager and installer work together wrt the classpath
Need to make sure the module manager and the installer are on the same page when it comes to building and using the c... Chad Berkley
03:48 PM Bug #3900: leaving fullscreen mode gives an NPE and closes window
same as 2369
*** This bug has been marked as a duplicate of bug 2369 ***
Chad Berkley
03:48 PM Bug #2369: Scrollbars Disappear After Using Fullscreen Mode--Now crashes
*** Bug 3900 has been marked as a duplicate of this bug. *** Chad Berkley
03:36 PM Bug #2369: Scrollbars Disappear After Using Fullscreen Mode--Now crashes
Try to figure this out and remove full screen mode if we can't get it fixed before 2.0 Chad Berkley
03:46 PM Bug #3932: Configure Actor actor context menu item missing
*** Bug 3896 has been marked as a duplicate of this bug. *** Chad Berkley
03:46 PM Bug #3896: String Parameter does not offer option to configure unlike 1.0 release.
Same bug as 3932
*** This bug has been marked as a duplicate of bug 3932 ***
Chad Berkley
03:44 PM Bug #3809: jni actors do not work
Check that this works with the installer. Chad Berkley
03:41 PM Bug #4016 (Resolved): Test IZPack Installer on 64 bit machine
Determine if this works. Chad Berkley
03:40 PM Bug #4015 (Resolved): Add 64 bit disclaimer to installer
Add a statement saying we don't support 64 bit machines to the installer and the download website. Chad Berkley
03:39 PM Bug #3785: Unclear Java requirements for Kepler installer on Vista 64-bit
Need to add a disclaimer to our download page that says that kepler is meant for 32 bit systems and that we have not ... Chad Berkley
03:37 PM Bug #3238: Refactor NMI build
Need to change the NMI build so that tests run under the test stage instead of the build stage. Make sure all tests ... Chad Berkley
03:35 PM Bug #3977: Devlop test for ptII overrides in the system
David developed a test in the build system for this. You can run 'ant report-overrides' to see a list. Chad Berkley
03:33 PM Bug #3967: Unable to run java -jar kepler-trunk.jar with -nogui -nocache -runwf fullworkflowpath options
check that all command line arguments are passed to the execution scripts. Chad Berkley
03:32 PM Bug #4014 (Resolved): Remove "include class" checkbox in export kar dialog
This check box should be removed because we do not currently support including class files in the kar. Chad Berkley
03:30 PM Bug #3734: Some demos no longer work after new build/repos
make sure all demos work with the new installer. Chad Berkley
03:29 PM Bug #4013 (Resolved): Make sure duplicate jars are not included in the installer
to the greatest extent possible, try to reduce the size of the installer by removing duplicate jars. Chad Berkley
03:28 PM Bug #3027: jar handling issues
Try to add shared jar files to one module instead of repeating them throughout the repository. Chad Berkley
03:26 PM Bug #3898: update .kepler instead of removing it between versions
Aaron agreed to take this on with help from david and chad. We need to be able to upgrade the .kepler directory betw... Chad Berkley
03:24 PM Bug #3976: Update Documentation for 2.0 release
I will take over as the editor of the documentation but will pass out various sections to others to author. Chad Berkley
03:23 PM Bug #2321: merge exp files into ptolemy CVS
In the conference call on 4/21/09, Christopher agreed to take a pass at this and I (chad) will finish off whatever he... Chad Berkley
03:22 PM Bug #3905: In devel tree, build-area should be renamed to build
Closing this. It was thought that the name 'build' would make people think they could delete the directory, so the n... Chad Berkley
02:03 PM Bug #4001: WRP - Save/Open KARs containing MOMLs and ROMLs
retarget to 2.0 ben leinfelder
10:57 AM Bug #3999: WRP - create event-driven states for Kepler
Looking at taking work done in the Morpho project that deals with tracking application events and state changes and b... ben leinfelder
09:36 AM Bug #4012: update documentation to explain adding actor to library via KAR
It would be great if the process of creating KAR files and registering them with the library could be automated for t... Shawn Bowers
09:29 AM Bug #4012 (New): update documentation to explain adding actor to library via KAR
The current Hello World Tutorial stops the tutorial at using 'Instantiate Component' to place an actor on the canvas.... Matt Jones

04/21/2009

06:19 PM Bug #4010: RExpression2 - tracking for backwards compatibility
I've gone through the existing R demos (now in modules/r/demos/R) and tested them with the RExpression2 actor in plac... ben leinfelder
04:59 PM Bug #4010: RExpression2 - tracking for backwards compatibility
1. Numbers are converted to ArrayTokens of numbers when going from JRI -> Ptolemy. This is a JRI quirk/feature in tha... ben leinfelder
04:47 PM Bug #4010 (New): RExpression2 - tracking for backwards compatibility
This bug is meant to help identify and track differences between the script-based (original) RExpression actor and th... ben leinfelder
05:55 PM Bug #3586: COMAD traces should be reproducible when there is limited concurrency
I am going to add to the base class of all actors that render COMAD collections (including ComadTest) the ability to ... Timothy McPhillips
04:43 PM Bug #4008: EML 2 Dataset throws errors when accessing public data from mixed public/private datasets
Since workflows created under kepler-trunk don't always load smoothly under kepler-1.0, here is an equivalent workflo... Oliver Soong
04:42 PM Bug #4008: EML 2 Dataset throws errors when accessing public data from mixed public/private datasets
Both 1.0.0 and trunk will throw errors, but trunk seems to have more difficulty than 1.0.0. Under trunk, one of the ... Oliver Soong
04:37 PM Bug #4008: EML 2 Dataset throws errors when accessing public data from mixed public/private datasets
judithk.306.16
2001-2003 are public, 2004-2006 are private.
Oliver Soong
02:24 PM Bug #4008: EML 2 Dataset throws errors when accessing public data from mixed public/private datasets
What datapackage (id) are you downloading? ben leinfelder
02:22 PM Bug #4008: EML 2 Dataset throws errors when accessing public data from mixed public/private datasets
This workflow will throw four errors on load and the EML 2 Dataset actor will be red with an ERROR label, but it will... Oliver Soong
02:21 PM Bug #4008 (Resolved): EML 2 Dataset throws errors when accessing public data from mixed public/private datasets
When a dataset on KNB has some tables that are public and some tables that are private, EML 2 Dataset attempts to loa... Oliver Soong
04:04 PM Bug #3934: Report Designer - editable Report Title field
Added split pane and inner report layout panel to the report designer. This allowed us to add a simple header and ti... debi staggs
04:00 PM Bug #3809: jni actors do not work
now that the R actors (and the JRI implementations) have been moved to another module, I'm using a colon-separated li... ben leinfelder
03:06 PM Bug #3931: Get the R actor working with JNI
We've moved RExpression actors (both the script-based and the JRI-based implementations) to a new and separate module... ben leinfelder
02:48 PM Bug #4006: Move R actor to separate module
-moved code and demos and dlls and jars to the "r" module
-added "r" module to "kepler-trunk" modules.txt (might need...
ben leinfelder
11:30 AM Bug #4006 (Resolved): Move R actor to separate module
We want better facilitate modularization (and allow different release schedules for this very important actor).
I'll...
ben leinfelder
02:36 PM Bug #4009 (Resolved): kepler 2.0 must provide everything needed for modules
This is a tracking bug meant to ensure that the standard kepler 2.0 system provides everything needed by modules.
...
Derik Barseghian
12:52 PM Bug #3782: Kepler-trunk fails to properly read in kar files the first time after they are built.
This bug has somehow been resolved. I tested it today and could not reproduce the error any longer. David Welker
12:25 PM Bug #3977: Devlop test for ptII overrides in the system
There are no overrides amongst the core modules of Kepler. (However, there are overrides of parts of Ptolemy.)
David Welker
11:20 AM Bug #4004: error inferring widths in instance of class actor
The problem was a result of restructuring the code to allow using width inference in model transformation and pTera. ... Bert Rodiers
09:22 AM Bug #4004 (Resolved): error inferring widths in instance of class actor
I get an exception when creating an instance of a class actor that contains a relation:
1. place composite actor o...
Daniel Crawl
11:13 AM Bug #3803: Cannot open a workflow through the command prompt, open with, or send to menus
not critical for 2.0 release. it's a nice feature to have, but not blocking the release. ben leinfelder
11:13 AM Bug #3904: devel tree should have a top level build.xml file and README.txt
The name "build" is a common directory name for a place where classes are built. The fear of using the term "build" f... David Welker
10:39 AM Bug #2363: Move Actions out of BasicGraphController
I'll take this bug as part of bug # 2321. Christopher Brooks
10:32 AM Bug #3947: Create a module manager
I just tried Tools -> Module Manager, and it is pretty slick!
Is there anyway to avoid downloading modules?
Ideally, ...
Christopher Brooks
09:50 AM Bug #3605: problem with ProvenanceRecorder
I fixed this in r16612: unregister listeners when changing recording types. Daniel Crawl
09:12 AM Bug #4003 (New): Support for non-GUI Kepler installer.
Many users need to install Kepler on a cluster or other distributed environments where they do not have a GUI. So it ... jianwu jianwu

04/20/2009

05:19 PM Bug #3948: Create new configuration system supporting modules
Last week, I spoke with Edward about runtime configuration and he
believes that it would be fairly easy to create an...
Christopher Brooks
05:07 PM Bug #4002: RExpression2 - handle arbitrary R data structures
Here is an example script that creates different data objects:
x <- 1:10
y <- x + rnorm(10)
f <- y ~ x
l <- lm(f)
s <...
ben leinfelder
05:06 PM Bug #4002 (New): RExpression2 - handle arbitrary R data structures
Not everything in R fits into the Ptolemy types (nor the JRI types, for that matter).
The lm() method, for instance,...
ben leinfelder
04:56 PM Bug #4001 (Resolved): WRP - Save/Open KARs containing MOMLs and ROMLs
In order to support report layouts with momls, we want to shift over to opening and saving not just the moml xml, but... ben leinfelder
04:53 PM Bug #4000 (Resolved): WRP - upload PRAs to repository
Similar to the KAR upload feature for sharing actors, Publication Ready Archives should be uploadable so that people ... ben leinfelder
04:46 PM Bug #3949: Get the installer working with the new build system
Can't you do something like:
specURL = Thread.currentThread().getContextClassLoader()
.ge...
Christopher Brooks
03:37 PM Bug #3949: Get the installer working with the new build system
Have run into all kinds of problems trying to make a Windows EXE file with our new module setup. Launch4J assumes th... Chad Berkley
04:43 PM Bug #3999 (Resolved): WRP - create event-driven states for Kepler
This is probably more general than the "reporting" module, but I am putting it here because this has the most immedia... ben leinfelder
04:37 PM Bug #3998 (Resolved): Report Viewer - render Report Instance on???Event
We need to create an event/state feature that allows us to trigger events in different views. One such action would b... ben leinfelder
03:17 PM Bug #3708: Case actor issues
For issue 1:
Case uses CaseGraphFrame to display tabs for each refinement. CaseGraphFrame is a subclass of ActorGrap...
Daniel Crawl
02:51 PM Bug #3997: Supporting display actor conversion for command line execution.
What's in the Hydrant is just a new MoML filter and a set of new classes which extend display related actors, like Di... jianwu jianwu
02:30 PM Bug #3997: Supporting display actor conversion for command line execution.
Am I to understand that Hydrant has this code already?
Cool.
It seems a little heavyweight to require Hydrant here,...
Christopher Brooks
02:20 PM Bug #3997 (Resolved): Supporting display actor conversion for command line execution.
When executing workflow for batch mode, users may want the display actors in the workflow can be converted automatica... jianwu jianwu
02:25 PM Bug #3251: Installer Splash Screen should be an HTML Widget
I'm the reporter on this, it was assigned to Dan Higgins, I'm reassiging
it to Chad for his configuration. The issue...
Christopher Brooks
02:19 PM Bug #3242: dlls should not go in c:/Windows/System32
I'm the reporter on this bug, I noticed it was assigned to Dan Higgins
so I'm reassigning it to Chad as he is working...
Christopher Brooks
02:15 PM Bug #2321: merge exp files into ptolemy CVS
See bug # 3977, Devlop test for ptII overrides in the system
util/src/ptolemy/README.txt
says:
Below are files that...
Christopher Brooks
01:58 PM Bug #3996 (Resolved): Report Model - [de]serialize Items of Interest
After selecting items of interest from a workflow model, you will loose those selections if you close Kepler. We need... ben leinfelder
01:53 PM Bug #3995 (Resolved): Report Model - [de]serialize Report Item properties
Need to make sure we are saving the properties when they are edited, and also setting them when report layouts are op... ben leinfelder
01:49 PM Bug #3994 (Resolved): Report Designer - use "workflow outline" rather than Items of Interest
Instead of requiring that users manually add ports and parameters to the list of "Items of Interest" - we could use a... ben leinfelder
01:44 PM Bug #3993 (Resolved): Report Designer - add parameters to the Items of Interest
Actor ports are currently the only "reportable item" - we need to include diretor/actor/workflow parameters as "Items... ben leinfelder
01:42 PM Bug #3992 (Resolved): Report Designer - finalize Report item properties
We've got the window for editing them - but it's still unclear exactly what properties we'll want/need to support. Ri... ben leinfelder
12:18 PM Bug #3991: large workflow errors
both.xml: The large workflow with 2 composite actors
rain.xml: One composite actor alone
buffalo.xml: The other compo...
Oliver Soong
12:08 PM Bug #3991 (Resolved): large workflow errors
I have a large workflow (both.xml) that seems to be generating these errors:
Unable to parse the MetaData: null
...
Oliver Soong
12:13 PM Bug #3691: JButton labels truncated on macOSX
I think Matt wants the buttons to follow native l+f (i.e. don't use the square buttons i posted). Derik Barseghian
12:01 PM Bug #3606: ProvenanceRecorder config actor menus
I believe Daniel has fixed this, I no longer see these issues. Derik Barseghian
11:54 AM Bug #3990 (Resolved): Include "workflow-run-manager" module in "wrp" suite
Rather than running as it's own suite, the WRM module should be included in the WRP suite. WRP includes provenance an... ben leinfelder
11:44 AM Bug #3593: exporting an actor to kar does not save portparameters that have been defined
This is still a bug. I haven't looked into it yet. Derik Barseghian
10:54 AM Bug #2369: Scrollbars Disappear After Using Fullscreen Mode--Now crashes
bug #3900 addresses the leaving full screen crash. Derik Barseghian
10:51 AM Bug #2369: Scrollbars Disappear After Using Fullscreen Mode--Now crashes
This problem appears now to be worse (running kepler-trunk). Going to fullscreen mode and then hitting escape now ca... Timothy McPhillips

04/18/2009

06:45 PM Bug #3984: RequireVersion parameter cannot be deleted from a saved workflow
This bug is replicatable in a non-Kepler Ptolemy installation.
File -> New -> Graph Editor
Drag in a RequireVersion a...
Christopher Brooks
06:28 PM Bug #3988: Rectangle shifts position on resize
This bug: "create a rectangle (components->workflow->workflow documentation) and
resize it," is also present in Ptole...
Christopher Brooks

04/17/2009

12:11 PM Bug #3988 (Resolved): Rectangle shifts position on resize
If I create a rectangle (components->workflow->workflow documentation) and resize it, the entire rectangle shifts sli... Oliver Soong

04/16/2009

11:37 AM Bug #3949: Get the installer working with the new build system
I have added two new tasks to the build system and two new targets. The first is the installer task which creates th... Chad Berkley

04/14/2009

06:22 PM Bug #3986 (Resolved): RExpression confounding R working directory and .kepler folder
If I have two RExpression actors, I might expect them to operate in different working directories, yet still be able ... Oliver Soong
05:56 PM Bug #3985: Types resolved to unacceptable types
This bug is slightly more fun. Change the SDF Director to allow disconnected graphs, delete the relation, then run i... Oliver Soong
05:46 PM Bug #3985 (Resolved): Types resolved to unacceptable types
URL provides a sample workflow that has been demonstrating the error on my system. Because this problem has been con... Oliver Soong
11:17 AM Bug #3809: jni actors do not work
i'd assume that the installer/launcher version of Kepler will be able to set the java.library.path property on start ... ben leinfelder
11:16 AM Bug #3984 (Resolved): RequireVersion parameter cannot be deleted from a saved workflow
In an unsaved workflow (no associated file), RequireVersion can be added and deleted as expected. If I save an entir... Oliver Soong
10:00 AM Bug #3910: RExpression multiport input drops record columns
Closing. It was a bug in Kepler 1.0.0 with RExpression1 that works in Kepler 1.x dev with RExpression1. I had it wr... Oliver Soong
09:07 AM Bug #3963: RExpression2 - support mixed lists output from R
the R expression:
list(1, TRUE, 3)
preserves the numeric/boolean typing in the list:
{{1.0}, {true}, {3.0}}
This is c...
ben leinfelder

04/13/2009

05:09 PM Bug #3910: RExpression multiport input drops record columns
I tried this with the RExpression actor (AKA the original "RExpression1") off of kepler-trunk and it seems to work. E... ben leinfelder
04:29 PM Bug #3960: RExpression2 - support arrayType(arrayType(....)) tokens
out of my control! ben leinfelder
04:25 PM Bug #3960: RExpression2 - support arrayType(arrayType(....)) tokens
Why make assumptions about dropping single element list structures? Maybe I want a list of single element lists. Oliver Soong
04:01 PM Bug #3960: RExpression2 - support arrayType(arrayType(....)) tokens
can now handle arrayType(arrayType(...) so that the given expression ends up looking like:
{"1", "b", "3"}
Notice tha...
ben leinfelder
03:13 PM Bug #3962: RExpression2 - support RecordTokens with length=1
RExpression2 actor now accepts the length=1 RecordToken, but slightly mutates the structure during the conversion.
Pt...
ben leinfelder
10:44 AM Bug #3962: RExpression2 - support RecordTokens with length=1
I can see in the RExpression2 code that I'm assuming RecordTokens contain ArrayTokens. But when there's only one Toke... ben leinfelder
10:53 AM Bug #3963: RExpression2 - support mixed lists output from R
for mixed-type lists that contain strings, all items will end up as strings in Ptolemy. arrayType(scalar, ...) token... ben leinfelder
10:35 AM Bug #3961: RExpression2 - support arrayType(scalar, ....) tokens
My only guess with handling heterogenous array items is to use the low-level rniPut(...) methods in JRI and manually ... ben leinfelder
10:32 AM Bug #3977: Devlop test for ptII overrides in the system
I am confused by the rationale here for not having overrides in the release. How could it cause problems loading addi... David Welker
10:21 AM Bug #3977 (Resolved): Devlop test for ptII overrides in the system
Standard releases of Kepler can contain no overrides because it may cause problems with loading additional modules in... Chad Berkley
10:26 AM Bug #1750: Allow KAR files to include jar/class files
A possible addition to this system would be to have the JVM automatically find jars in a kar file and add them to the... Chad Berkley
10:14 AM Bug #3976 (Resolved): Update Documentation for 2.0 release
Need to update the Getting Started Guide, the user guide and the actor reference with new 2.0 features. Chad Berkley

04/10/2009

05:40 PM Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
After some further thinking and discussing of the search interface, I've decided to continue to pursue the integrated... Derik Barseghian
04:12 PM Bug #3973 (New): Additional information for 64-bit users installing 1.0.0
Kepler 1.0.0 on 64-bit Windows systems seems to require a 32-bit java install, which is not the default provided by j... Oliver Soong
01:17 PM Bug #3970: XSLT unnecessarily writes to a file
(In reply to comment #1)
> Some XML documents are large enough that String representations can memory
> limited. By ...
Chris Weed
09:17 AM Bug #3970: XSLT unnecessarily writes to a file
Some XML documents are large enough that String representations can memory limited. By using temporary files properl... Matt Jones
08:31 AM Bug #3970 (Resolved): XSLT unnecessarily writes to a file
Instead of creating a temporary file that may fail, write the XSLT output to a string buffer.
//XSLT.java
StringW...
Chris Weed
08:31 AM Bug #3968: XSLTActor temporary file bug
Disregard comment #1 and see Bug 3970. Chris Weed
05:32 AM Bug #3968: XSLTActor temporary file bug
The file XSLT.java has the same problem for the output html file "fileOut". Chris Weed

04/09/2009

04:02 PM Bug #3947: Create a module manager
Here is the current status of the module manager.
It is currently under the tools menu. It allows scientists or deve...
David Welker
03:20 PM Bug #3947: Create a module manager
Need to deal with caching issues with switching modules. Some objects should only be used with one module or suite a... Chad Berkley
01:41 PM Bug #3968 (Resolved): XSLTActor temporary file bug
The XSLTActor creates a temporary file in the current directory for storing the input XML file to be processed. This ... Chris Weed
 

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