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244 issues   (38 closed — 206 open)

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Bug #1143: need SAS actor
Bug #1548: consolidating data access user interfaces
Bug #1587: Define and implement EcoGrid "dataQuery" method
Bug #1655: DIALOGS: Implement New UI for Sources Dialog (was "integrate ecogrid registry into kepler ecogrid client")
Bug #1749: Global toggle for port name display
Bug #1884: Enable drag and drop of ports and relations
Bug #1890: Add query builder to generic db actor
Bug #1898: Redesign the web service harvester and create design documentation
Bug #1911: Provide real-time feedback/animation for workflow progress as a default
Bug #1914: Implement the 'most recently used' concept for workflows and actors
Bug #1915: Define a published interface for a semantic search service
Bug #1916: Implement semantic search for data and actors in local files
Bug #1917: Design and implement workflow semantic type check.
Bug #1918: Search based on the semantic annotation of an actor's port
Bug #1919: choose language for semantic annotations in kepler archives
Bug #1920: Search based on semantic annotations of a dataset's attributes
Bug #1921: Define the Kepler GUI components required for semantic mediation in Kepler
Bug #1922: Develop strategies for GUI extenstions for the semantics stuff
Bug #1923: Develop ontologies; engage KR group
Bug #1981: Extend database query actor to handle datatypes
Bug #1997: Support Getting Metadata for Darwin Core search result item
Bug #2005: associate an visual text annotation with a specific actor
Bug #2011: MENUS: Context Menus - Add Cut/Copy/Paste to all right click popup menus
Bug #2012: Incorporate combo boxes with pick lists in as many places as possible to minimize user typing and provide knowledge of acceptable choices
Bug #2015: Provide more meaningful error messages
Bug #2024: provide natural language summary of workflow
Bug #2027: provide ability to assign checkpoints in the workflow
Bug #2028: provide ability to easily visualize data at various places in workflow
Bug #2029: consider guided analysis wizard
Bug #2033: provide indication of actor compatibility
Bug #2036: provide different levels of turning displaying annotations
Bug #2056: Port labels appear 'twice' when DataSource actor added
Bug #2104: add concept search for data
Bug #2105: add taxon concept search for data
Bug #2106: allow user to save search results
Bug #2109: make double-click open composite actor
Bug #2113: provide mechanism for saving queries
Bug #2116: alert user when new ontology is available
Bug #2117: mechanism for user to query for semantically compatible actors
Bug #2118: allow users to create units based on units in current ontology
Bug #2119: create user guide to ontologies for ecologists
Bug #2120: add visual indicators for non-annotated ports
Bug #2121: add features to support structural incompatibility
Bug #2122: add features to support semantic incompatiblity
Bug #2129: Data sources' schema attribute should not be stored in MoML
Bug #2133: Need ability to update data searches
Bug #2140: need dataset extraction WF for documentation/example purposes
Bug #2225: EML parser does not handle attribute list reference
Bug #2230: EML actor doesn't handle footer line in data file
Bug #2241: {de-}serialize semantic annotations to and from EML
Bug #2245: TRACKING: Batik SVG Rendering - remaining tasks
Bug #2246: TOOLBAR: status on opening workflows and blank frames
Bug #2247: TRACKING: Popup Dialog Changes
Bug #2249: Need to support a useful subset of PHYLIP (PHYlogeny Inference Package)
Bug #2250: Need documentation for collection-oriented workflow approach
Bug #2251: Need to document how to use Kepler for phylogenetics
Bug #2257: DIALOGS: Implement New Workflow Dialog
Bug #2258: DIALOGS: Implement New Director Dialog
Bug #2259: DIALOGS: Implement New Actor Dialog
Bug #2260: DIALOGS: Implement New "Advanced Search for Components" Dialog
Bug #2261: DIALOGS: Implement New "Advanced Search for Data" Dialog
Bug #2262: DIALOGS: Implement New "Search Ecogrid for Component Sources" Dialog
Bug #2263: DIALOGS: Implement New "Search Ecogrid for Data Sources" Dialog
Bug #2264: DIALOGS: Implement New "Semantic Annotation" Dialog
Bug #2265: Simple Kepler features movie to be displayed at the 1st time installation
Bug #2270: TRACKING: Localization and Improvement of User-Visible Messaging Strings
Bug #2271: Changing the Color Scheme
Bug #2302: Problem unzipping hierarchical data
Bug #2307: Mac OSX code missing for several JNI actors
Bug #2324: SVG - old-style icon still displayed for certain actors
Bug #2337: TRACKING - MENUS: Top-Level Menu Revision
Bug #2338: TRACKING - MENUS: pop-up context menu revision
Bug #2342: MENUS: Top-Level Menu - some toolbar buttons showing text
Bug #2348: Rewrite disk based GIS code for speed increase
Bug #2349: Actors should have preconditions to test for long runs
Bug #2359: enable/disable menu items and toolbar items as appropriate
Bug #2362: DataSourceIcon: use new SVG Icons dynamically, instead of drawing icon
Bug #2367: MENUS: Context Menus - Additional context menu designs needed
Bug #2382: Documentation kar does not appear in actor tree
Bug #2388: Incorporating the SRB actors with the gsi authentication framework
Bug #2393: Need ability to disable 'add port' to actors where not supported
Bug #2397: TOOLTIPS: dual screen setup - tooltip sometimes shown on wrong screen
Bug #2400: Need ability to set parameter ranges and relationships.
Bug #2410: need feature in UI for users to assign icon to an actor
Bug #2414: Opening a preexisting model should open in a blank viewer
Bug #2416: ICONS: Tracking bug - Rearranging and regenerating icons
Bug #2445: DataSource: add code to assign & display new raster thumbnail Icons for search results list
Bug #2446: ICONS: Handle missing thumbnails elegantly
Bug #2449: Animate at Runtime... action only partially works
Bug #2450: consider better mechanism for navigating multi-level workflow
Bug #2451: consider providing data-centric/data management feature in Kepler
Bug #2452: consider providing management console for workflow engineer
Bug #2459: Need for actor/attribute that detects OS/executables
Bug #2494: Problem with Microsoft zip extractor and Kepler zip
Bug #2509: FSM & Modal Model Menu selections do not work
Bug #2562: add unit info to eml2Data source actor
Bug #2569: Popup (context) menu do not appear for relations and connections
Bug #2570: port's context menu should contain renaming
Bug #2571: position of new elements on screen
Bug #2672: actor search term should be trimmed + searching with multiple terms
Bug #2828: Actor names inconsistent
Bug #2895: Distributed Execution Tracking Bug
Bug #2921: Way to temporarily comment out actors or connections
Bug #2963: Add data structure for tabular data and associated metadata
Bug #2987: Kepler Library (actor repository) Issues
Bug #2989: Changes in actor ontology does not cause the actor library to rebuild
Bug #2990: file|open dialog should open in workflows directory
Bug #2997: Icons stop working after using kepler for a while
Bug #3003: Copy/Paste of selection: copy should be selected
Bug #3027: jar handling issues
Bug #3028: Need for new IPCC/Hydro1K data (and metadata) on EarthGrid
Bug #3038: Save in Library Dialog problem with default Category
Bug #3062: Need ASC grid Utilities actor
Bug #3066: actor sdk
Bug #3095: add data mining actors (weka) and cheminformatics actors
Bug #3106: Out of memory while opening all demos, is -Xss5m or SVG the problem?
Bug #3116: Web page rendering needs to be made w3c compliant
Bug #3143: dataFrame_R cache problem under parallels
Bug #3149: cannot add arbitrary jars when exporting archive
Bug #3152: Use EcoGridServicesController with EcoGridWriter actor
Bug #3158: RBNBToKepler actors need to timeout more quickly
Bug #3160: RBNBToKepler actors should work within SDF, PN and DDF
Bug #3161: progress meter when downloading data with RBNBToKepler actors
Bug #3183: Return/Enter does not select default button in dialog boxes
Bug #3184: right-click context menu in RExpression actor
Bug #3187: RExpression actor does not share focus
Bug #3189: CommandLineExec needs ability to kill spawned process
Bug #3192: behavior of documentation actor
Bug #3194: add actors to support Sun Grid
Bug #3204: Kepler should have FSM examples
Bug #3205: gdalTranslate actor crashes on bad format and won't work with all gdal formats
Bug #3208: consolidate matlab actors
Bug #3210: add netCDF support to Kepler
Bug #3220: "Save" from TextEditor interferes with workflow save-before-closing prompt
Bug #3221: offset new windows
Bug #3222: save new workflow template
Bug #3223: interactive graphics in R
Bug #3226: Eval: subplots from RExpression overly condensed
Bug #3228: Kepler need a central place to handle network disconnection
Bug #3230: Matrix Viewer actor does not accept RExpression matrices
Bug #3231: 3-way table output (multiway cross tabulation actor?)
Bug #3235: Add an Edit, Select All menu item and respective accelerator
Bug #3265: ascToRaw needs more error handling
Bug #3266: ENM/GARP_MultipleSpecies-V.xml problems
Bug #3275: EML200DataSource interface
Bug #3278: Search result count is inflated when using both KNB sources ([un]authenticated)
Bug #3290: DarwinCore_test workflow takes forever to downloading data
Bug #3291: IPCC_ChangeNightlyBuildTest got an exception
Bug #3292: ENM/GDAL_h1K_NS workflow giving an exception
Bug #3295: Python/Ptolemnizer welcome text does not display
Bug #3332: RExpression_Matrix_IO_Test workflow gives an error
Bug #3333: "configure actor" dialog box changes after "documentation->display"
Bug #3361: parameters lose their Display Name when copy and pasted
Bug #3388: error running simihofi.xml workflow in Kepler 1.0.0
Bug #3392: Need scrollbars in Documentation > Customize Documentation window
Bug #3407: reset debugging windows, add timestamps
Bug #3408: create icon for DDF Boolean Select
Bug #3440: add Up and Down buttons to change port order on an actor
Bug #3529: cannot always set parameters when running workflow from command line
Bug #3531: Save As dialog inconsistent between linux and mac
Bug #3539: wierd behaviors of port parameter
Bug #3542: Tree View menu is too wide when opened
Bug #3546: Automatically load trace for a completed run into the provenance browser
Bug #3552: Annotation elements in trace file do not appear in details pane of provenance browser
Bug #3555: enhancements to Trace File view in provenance browser
Bug #3557: Provide data dependency graph view in provenance browser
Bug #3558: Store each workflow run trace in it's own directory
Bug #3559: month field in trace file name is off by one
Bug #3560: Color-code contents of CollectionDisplay
Bug #3566: order collection contents displayed in provenance browser?
Bug #3568: support for writing COMAD-style trace files from the Provenance Recorder
Bug #3573: Support for importing file contents automatically using CollectionSource
Bug #3574: Support for importing directory contents using CollectionSource
Bug #3575: A representation of COMAD collections on the file-system
Bug #3576: support for accessing cascading metadata from within CompositeCoactor
Bug #3577: FilterUI actor has problems
Bug #3578: optimize timing of data download by EML and other data source actors
Bug #3585: Provide API for creating output files during a workflow run
Bug #3586: COMAD traces should be reproducible when there is limited concurrency
Bug #3595: Exporting an actor should prompt user to semantically annotate it if it's not already
Bug #3605: problem with ProvenanceRecorder
Bug #3606: ProvenanceRecorder config actor menus
Bug #3631: Create diagram for Scheduler / Reporting interaction.
Bug #3634: Define the interface between Provenance and Reporting
Bug #3646: Create ROML Schema
Bug #3649: determine if Provenance has everything needed by Reporting
Bug #3652: Ensure all Provenance Recording Types record the same things
Bug #3655: create a Workflow Run Manager with ability to export Publication Ready Archives
Bug #3656: create a Provenance Client
Bug #3666: Create RIO schema
Bug #3668: Define contents of "Publication Ready Archive"
Bug #3671: Configurable workspace directory for holding workflows, data, and run products
Bug #3683: add tokenType to token_flow table in provenance sql schema
Bug #3693: MultiInstanceComposite actor deadlocks sometimes
Bug #3694: Sharing installation among users fails, users must have write permission
Bug #3705: some actor icons don't denote that they are a composite
Bug #3706: Add "Open the container" toolbar button
Bug #3708: Case actor issues
Bug #3724: composite's ports cannot be renamed from within composite--add context menu?
Bug #3739: Issues in inferring data lineage via the provenance recorder
Bug #3764: Kepler needs to support EML 2.1.0
Bug #3766: Improve menu options in text editor
Bug #3774: Hello World demo causes UI to become unresponsive and require restart
Bug #3785: Unclear Java requirements for Kepler installer on Vista 64-bit
Bug #3802: actor icons prevent channel connectors to align straight
Bug #3803: Cannot open a workflow through the command prompt, open with, or send to menus
Bug #3807: reserved symbols in record names passed to the RExpression actor generate a missing R error message
Bug #3874: ptolemy.util.StringUtilities.mergePropertiesFile() deletes properties
Bug #3899: web service actor does not work through proxy
Bug #3903: Use Java logging utilities instead of Apache commons logging facility
Bug #3910: RExpression multiport input drops record columns
Bug #3915: The error dialogue won't go away.
Bug #3917: refactor schema creation code out of recording classes
Bug #3921: Exported KAR files do not correctly export private classes
Bug #3930: error importing hello-world tutorial actor into kepler-1.0 suite
Bug #3936: Report Viewer - handle Image items
Bug #3943: error importing more than one actor created in one suite using kepler-1.0
Bug #3944: External script editors
Bug #4002: RExpression2 - handle arbitrary R data structures
Bug #4003: Support for non-GUI Kepler installer.
Bug #4035: MoMLSimpleApplication does not filter Display actor or any GUI Kepler actors.
Bug #4037: WRM - connect to Kepler-wide configurable provenance store
Bug #4039: matlab actor always stops matlab process in wrapup
Bug #4041: synchronization in matlab actor
Bug #4046: ComadTest should report more details when detecting an error
Bug #4052: Should be able to store native libraries in a kar file
Bug #4108: Do more extenstive testing before designating a revision of Ptolemy as stable
Bug #4131: Workflow Run Manager - Open in New Window allows opening same wf multiple times
Bug #4133: Workflow Run Manager - column widths should be size appropriately
Bug #4134: Workflow Run Manager - double clicking on search cell shouldn't sort column
Bug #4135: Workflow Run Manager - default sorting (by date) should be applied
Bug #4136: Workflow Run Manager - date and duration search should allow single operator-less arguments
Bug #4137: Workflow Run Manager - resizing width of column while in edit mode of search cell does not resize edit field
Bug #4138: Workflow Run Manager - search cell edit focus isn't lost appropriately
Bug #4140: Workflow Run Manager - delete runs functionality needs to be written
Bug #4144: Workflow Run Manager - moving columns / new windows bug
Bug #4147: Error message with selectable text
Bug #4254: wrapping up, never ending workflow! (PN inside PN)
Bug #4264: ant task fails if there are java compilation errors
Bug #4277: Report Designer - Add drop down selection list to the properties table.
Bug #4306: add command line params to the configuration
Bug #4363: wrm does not properly handle ModelReference actor
Bug #4473: Add WRM to bottom of report viewer for navigation
Bug #4480: can't view more than one of workflow editor, report designer, and report viewer at a time