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From 06/12/2009 to 07/11/2009

07/10/2009

06:01 PM Bug #4178: error handling with MoMLCommandLineApplication
I've changed ptolemy.moml.MoMLCommandLineApplication so that it calls
Manager.run() instead of Manager.execute().
Ma...
Christopher Brooks
05:16 PM Bug #3251: Installer Splash Screen should be an HTML Widget
Ok, readme is now an html document. Chad Berkley
03:13 PM Bug #3251: Installer Splash Screen should be an HTML Widget
The problem is that the links in the installer screen are not mouse sensitive.
A textual installer readme screen look...
Christopher Brooks
02:36 PM Bug #3251: Installer Splash Screen should be an HTML Widget
I'm going to close this for now. If someone really doesn't like the textual readme, I guess we can change it but it ... Chad Berkley
02:34 PM Bug #4018: Remove non-2.0 functionality from 2.0 release
non-2.0 functionality will be determined and modularized. closing this bug for now. Chad Berkley
02:28 PM Bug #4197: Waterflow TPC demo - tracking bug
added KAR for the base workflow that includes a report layout ben leinfelder
01:00 PM Bug #4197: Waterflow TPC demo - tracking bug
added workflow for the HIGH base flow that points to DEV server so that we can demo the dynamic data loading. ben leinfelder
09:48 AM Bug #4197: Waterflow TPC demo - tracking bug
we were/are having intermittent problems rendering images created in kepler on the report - this is deep in FOP/xmlgr... ben leinfelder
02:26 PM Bug #4013: Make sure duplicate jars are not included in the installer
At least most jars have been checked. There are probably still a few duplicates, but the major ones have been remove... Chad Berkley
02:17 PM Bug #4159: Cut 2.0-alpha/SanParks release
Kepler 2.0.0-pre-alpha1 is now released. I've documented the build branching arguments in the build instructions her... Chad Berkley
01:57 PM Bug #4239: Report Designer - PC issue - Grey backgrounds.
Also grey for the dynamic report item icon. debi staggs
01:39 PM Bug #4239 (Resolved): Report Designer - PC issue - Grey backgrounds.
On the PC, the following items are rendered with a grey background instead of white. :
delete button
all report i...
debi staggs
01:56 PM Bug #4242 (Resolved): Report Designer - PC issue - Improve the cursors.
The cursors on the PC need some work as follows:
The drag cursor doesn't change to an arrow when you are over the ...
debi staggs
01:50 PM Bug #4241 (Resolved): Report Designer - Can't select text in the Section Header static report item
If you want to select the text in the Section Header static report item, so that you can copy it using keyboard comma... debi staggs
01:45 PM Bug #4240 (In Progress): Report Designer - Menus with Copy, Cut, and Paste as related to Text Fields / Section Headers
When you select text that is in a text field or section header, users might try to use the Kepler menus to copy, cut,... debi staggs
01:24 PM Bug #4238 (Resolved): Report Designer - Improve the listeners for the static items.
Right now there is a mouse listener that takes the values from the section static report item field and puts it into ... debi staggs
01:03 PM Bug #4237 (Resolved): Report Designer - Replace the image icon, not the + sign.with the thumbnail of the user selected file.
Currently, when you choose a file for the static image it puts a thumbnail of that image into the report item panel, ... debi staggs
12:58 PM Bug #4236 (Resolved): Report Designer - Can't add two static image items and then change their images.
If you add two static image items all is well when you first assign the images to the items. You can also successfull... debi staggs
12:47 PM Bug #4235 (Resolved): Report Designer - Clear the values for the Image Static report item.
Right now, when a user swaps static images in the report, it doesn't clear the path value for the image file first, i... debi staggs
11:34 AM Bug #4233 (Resolved): Workflow View - Need to change old instructions on how to generate a report.
In the workflow view there are old instructions that explain how to generate a report they begin with the following:
...
debi staggs
11:33 AM Bug #4198: important sanparks tasks
All of this stuff presumably works now, so closing this bug. Chad Berkley
11:27 AM Bug #4232 (Resolved): LibraryIndex Unique Identifier
Currently the Component library uses the name of the NamedObj as the unique identifier. This is not a good idea when... Aaron Aaron

07/09/2009

10:46 PM Bug #4228: Not all tokens seem to be written when running WF from commandline
closing for now ben leinfelder
07:21 PM Bug #4229: rename runs with untitled workflow name when the user does a Save
Done! Daniel Crawl
04:31 PM Bug #4196: Report Designer - Easier to Grab Panels
Improved, and I think working fairly well, the user just has to grab somewhere in the panel that is not a button or a... debi staggs
04:29 PM Bug #4128: Improve reporting static item icons
Fixed for now, but improvement can always be improved. debi staggs
11:21 AM Bug #4094: new Unnamed windows should have a suffix that increments
New windows are now called Unnamed1, Unnamed2, etc. Daniel Crawl
11:18 AM Bug #2369: Scrollbars Disappear After Using Fullscreen Mode--Now crashes
I've disabled full screen mode since it crashes returning from full screen. (See my comments why this occurs in Keple... Daniel Crawl

07/08/2009

06:15 PM Bug #4231 (Resolved): Workflow Run Manager - failed runs should be highlighted red
If a run fails the row should be red in the WRM. To this end I've added an errorMessage string to the WorkflowRun cla... Derik Barseghian
06:03 PM Bug #4140: Workflow Run Manager - delete runs functionality needs to be written
The confirmation dialog is in place. It looks different from other kepler confirmation dialogs; I probably need to ge... Derik Barseghian
06:02 PM Bug #4133: Workflow Run Manager - column widths should be size appropriately
I think the WRM columns are sized reasonably by default now. Derik Barseghian
05:57 PM Bug #4230 (Resolved): problem associating errors with particular execution
In SDF provenance records to the error table an exception thrown after the workflow stops. In PN, multiple exceptions... Derik Barseghian
05:47 PM Bug #4229 (Resolved): rename runs with untitled workflow name when the user does a Save
Dan and I have been discussing this today, and he's working on it. When a user creates a workflow, runs it a number o... Derik Barseghian
01:33 PM Bug #4019: Workflow View in left pane
So this has changed a bit. The idea now is not to have a separate tab for workflows but to have a folder in the Comp... Aaron Aaron
11:23 AM Bug #4197: Waterflow TPC demo - tracking bug
when I add another port named "trigger" to the "Plot base flow" actor and connect a similar output port from the upst... ben leinfelder
11:21 AM Bug #4197: Waterflow TPC demo - tracking bug
when running from the command line the "Plot base flow" R actor is not fired and no tokens are being recorded (as you... ben leinfelder
11:14 AM Bug #4228: Not all tokens seem to be written when running WF from commandline
tracked down one issue - was looking up token type/value based on the read row in provenance even though we were inte... ben leinfelder
08:39 AM Bug #4228: Not all tokens seem to be written when running WF from commandline
If you can figure out how to call exportMoML() on the top level, then
you can get the moml after the filter is run. ...
Christopher Brooks
08:26 AM Bug #4228 (Resolved): Not all tokens seem to be written when running WF from commandline
I'm still trying to isolate the problem, but I'm finding that a RecordToken is not "fully" being written to provenanc... ben leinfelder
09:28 AM Bug #3874: ptolemy.util.StringUtilities.mergePropertiesFile() deletes properties
Fixed. I'm not sure what the cause is here, I can't get a small test to fail.
Basically, we read the system properti...
Christopher Brooks

07/07/2009

06:54 PM Bug #3874: ptolemy.util.StringUtilities.mergePropertiesFile() deletes properties
Ok, I can replicate a problem in Kepler under Windows XP
If I do:
cp $PTII/lib/ptII.properties ../ptolemy/lib
Then "...
Christopher Brooks
03:12 PM Bug #4204: Report Designer - finding drag area on components is hard
We are postponing this bug until the next release. Fixing requires some time-consuming changes to how we are laying ... debi staggs
09:52 AM Bug #4204: Report Designer - finding drag area on components is hard
Is this being addressed or are we postponing until later? ben leinfelder
03:12 PM Bug #4196: Report Designer - Easier to Grab Panels
*** Bug 4204 has been marked as a duplicate of this bug. *** debi staggs
03:11 PM Bug #4196: Report Designer - Easier to Grab Panels
Moving this bug to the next release, since changing the layout will require some additional time to get the panels to... debi staggs
03:07 PM Bug #4195: Report Designer - 'Location aware' rendering of newly dropped panels.
Moving this enhancement to the next release, since it will touch some of the core functionality of the report designe... debi staggs
03:03 PM Bug #4226: Report Designer - use 16pt bold for Report Title text field
The fonts for the Title text field and the Section text field have been changed, so the the font for the Title text f... debi staggs
09:25 AM Bug #4226 (Resolved): Report Designer - use 16pt bold for Report Title text field
The stylesheet for rendering the report (as pdf) has the following defaults:
Title: 16pt bold
Section Header: 14pt ...
ben leinfelder
01:18 PM Bug #4224: New LSID generated when opened from KAR
This was an artifact of old code in KeplerGraphTableau that updated the LSID of a workflow if the existing authority ... Aaron Aaron
12:58 PM Bug #4197: Waterflow TPC demo - tracking bug
"nil" DoubleTokens will remain "nil" (rather than NaN) ben leinfelder
09:29 AM Bug #4197: Waterflow TPC demo - tracking bug
For the tutorial:
-we will use the "base" workflow with production data. Most slides and hands-on activities will use...
ben leinfelder
09:21 AM Bug #4197: Waterflow TPC demo - tracking bug
Changes made by Jim:
-month and river are now strings (rather than factors (ie. ints).
-rounding done to 4 places.
C...
ben leinfelder
09:51 AM Bug #4161: Develop kepler workflow execution engine
we've had a couple successful "round trip" runs:
-upload a workflow KAR (indus)
-schedule execution (indus)
-execute ...
ben leinfelder
09:47 AM Bug #4227 (Resolved): Provenance - use Integer return type in Queryable interface
Found out that resultset.getInt(x) will return 0 when in fact there was a null (no result). Changed to not start IDs ... ben leinfelder
09:42 AM Bug #4225: Provenance - start auto-incremented IDs at 1 not 0
Dan changed the auto-increment start for HSQLDB to be 1. Works great.
Merged from trunk to our sanparks branch
There...
ben leinfelder
09:05 AM Bug #4221: Report Viewer - Need more space between each element
added padding to the top and bottom of item cells - seems better. re-open if this did not address the specific concerns. ben leinfelder

07/06/2009

10:55 PM Bug #4221: Report Viewer - Need more space between each element
which ones in particular? ben leinfelder
11:03 AM Bug #4221 (Resolved): Report Viewer - Need more space between each element
Elements in the report view should have some regular spacing between each element. debi staggs
10:48 PM Bug #4222: Report Designer - icon for the static graphic image switches back to generic icon after a drop
I think keeping the proportions of the original image is better. Yes, it's nice to have consistent icons on the items... ben leinfelder
05:16 PM Bug #4222: Report Designer - icon for the static graphic image switches back to generic icon after a drop
Yes, it is still being scaled to a 30 x 30 square. It can be a rectangle or some percentage of the original image, b... debi staggs
02:31 PM Bug #4222: Report Designer - icon for the static graphic image switches back to generic icon after a drop
is it still scaling it to a square so that some images look squashed in certain directions? ben leinfelder
02:25 PM Bug #4222: Report Designer - icon for the static graphic image switches back to generic icon after a drop
A thumbnail version of the user-assigned image is shown as an icon for the static image, if they have selected one. ... debi staggs
11:07 AM Bug #4222 (Resolved): Report Designer - icon for the static graphic image switches back to generic icon after a drop
You can choose a custom icon for the static graphic image, when you select the graphic for the static image, and the ... debi staggs
10:42 PM Bug #4220: Report Viewer - South label is not being rendered
was using the wrong xpath for the south label. ben leinfelder
12:40 PM Bug #4220: Report Viewer - South label is not being rendered
retarget for 2a1 ben leinfelder
11:01 AM Bug #4220 (Resolved): Report Viewer - South label is not being rendered
The south label and its value is being created in the model correctly,(it seems) but it is not showing up in the repo... debi staggs
10:21 PM Bug #4223: Report Viewer - Text runs over edge of button for 'Refresh using current layout'
commented out the button for now. It was also confusing for most users - especially since it could result in wildly d... ben leinfelder
09:49 PM Bug #4223: Report Viewer - Text runs over edge of button for 'Refresh using current layout'
I've been meaning to remove the button altogether - this seems like just the motivation to do it! ben leinfelder
11:13 AM Bug #4223 (Resolved): Report Viewer - Text runs over edge of button for 'Refresh using current layout'
In the report viewer the text for the button that says "Refresh using current layout' runs over the edges of the button. debi staggs
10:11 PM Bug #4225 (Resolved): Provenance - start auto-incremented IDs at 1 not 0
I inadvertently noticed that when I queried for the last execution of a workflow that never ran I was still getting b... ben leinfelder
04:33 PM Bug #4224 (Resolved): New LSID generated when opened from KAR
When a KAR is opened on a computer that did not save it, the LSID of the workflow/model is changed.
See attached KAR...
ben leinfelder
11:14 AM Bug #3874: ptolemy.util.StringUtilities.mergePropertiesFile() deletes properties
I just saw this bug occur on windows xp: if $PTII/lib/ptII.properties exists, Kepler won't start:
[run] Caused by: j...
Daniel Crawl
10:37 AM Bug #4219 (New): "Kepler Repositories" should be retrieved from the registry
Currently we use a combination of 2 .properties files to make actor/workflow/run library repositories available for u... ben leinfelder
10:35 AM Bug #4140: Workflow Run Manager - delete runs functionality needs to be written
There should also be a confirmation dialog for deletion, 'Are you sure you want to delete these runs?' Derik Barseghian

07/02/2009

07:31 PM Bug #4140: Workflow Run Manager - delete runs functionality needs to be written
delete functionality added in r19815.
todo:
- check if we need to also delete runs from objectmanager and/or cache.
...
Derik Barseghian
05:20 PM Bug #4218: Report Designer - difficult to enter text for Item labels
The window was getting the focus instead of the label. It is fixed now. debi staggs
03:56 PM Bug #4218 (Resolved): Report Designer - difficult to enter text for Item labels
Clicking in the text area for a dynamic item label rarely keeps my cursor in the field - so I can't really type a lab... ben leinfelder
11:46 AM Bug #4159: Cut 2.0-alpha/SanParks release
Added new functionality to the build system. This is checked into the branch, but not into the trunk. Should probab... Chad Berkley
10:53 AM Bug #4217: Report Viewer - "nil" not rendering consistently/correctly
committed to the branch. ben leinfelder
08:36 AM Bug #4217: Report Viewer - "nil" not rendering consistently/correctly
This is also happening for DoubleTokens - but they show as NaN rather than nil - which I believe is acceptable.
Boole...
ben leinfelder
10:52 AM Bug #4211: Report Designer - do not allow dropping of actors on report
now in branch and head ben leinfelder
09:31 AM Bug #4211: Report Designer - do not allow dropping of actors on report
wait - keeping this open until i merge to the branch ben leinfelder
09:30 AM Bug #4211: Report Designer - do not allow dropping of actors on report
now checking if the dropped object contains any children - reject the drop if it does
NEED TO COMMIT TO BRANCH
ben leinfelder
10:42 AM Bug #4199: NPE in org.kepler.moml.NamedObjId
I'm getting another exception in NamedObjId that looks related. This one can be reproduced by opening demos/getting-s... Daniel Crawl
10:04 AM Bug #4203: use port parameters in web service actors
WebService now uses port parameters. Daniel Crawl

07/01/2009

06:11 PM Bug #4217: Report Viewer - "nil" not rendering consistently/correctly
added special handling when we have IntToken.NIL in the report instance
NEED TO COMMIT TO BRANCH
ben leinfelder
06:00 PM Bug #4217: Report Viewer - "nil" not rendering consistently/correctly
After some digging, I'm going to conclude that this is being introduced by the "deep copy" serialization technique fo... ben leinfelder
05:41 PM Bug #4217: Report Viewer - "nil" not rendering consistently/correctly
The PDF seems to render "nil" as "nil" whereas the AWT rendering (from Apache-FOP) sometimes shows a huge integer ins... ben leinfelder
04:37 PM Bug #4217 (Resolved): Report Viewer - "nil" not rendering consistently/correctly
When outputting arrays of numbers and booleans that contain "nil" entries in R, they are not converted to NULL for us... ben leinfelder
05:29 PM Bug #4214: Report Designer - Dragging workflow components near report fields adds text to the fields
Closing this bug because it is default behavior for the text fields, not sure if there is anything we can do about it... debi staggs
05:28 PM Bug #4207: Report Designer - drop area is too small
We discussed this, and decided that it would probably be o.k. the way it is for now. debi staggs
05:27 PM Bug #4128: Improve reporting static item icons
Made the icons smaller and all the same size, but not really happy with them, I think that they are TOO small right n... debi staggs
05:26 PM Bug #4212: Report Designer - Clicking the delete button removes unselected items
Fixed all remaining issues with this bug. debi staggs
11:02 AM Bug #4212: Report Designer - Clicking the delete button removes unselected items
forgot to click the fixed button Chad Berkley
10:34 AM Bug #4212: Report Designer - Clicking the delete button removes unselected items
fixed. if nothing is selected, nothing will be deleted. Chad Berkley
05:20 PM Bug #4190: Report Designer - Create View classes for the Items
Closing this bug, ended up creating view class only for the Dynamic Report Item.
Creating views for the static items ...
debi staggs
04:35 PM Bug #4197: Waterflow TPC demo - tracking bug
tpc02-water-flow-high.xml:
-using record-based data table rendering
-including status actor
-"nil" values are showing...
ben leinfelder
03:43 PM Bug #4197: Waterflow TPC demo - tracking bug
-hsqldb 1.8 looks good.
-removed the browser call
-added naive "status" example - needs to be meaningful
Jim will do ...
ben leinfelder
12:53 PM Bug #4197: Waterflow TPC demo - tracking bug
I'm not seeing the memory errors today when using Eclipse with the currently checked in hsql, nor in Eclipse with hsq... Derik Barseghian
09:31 AM Bug #4197: Waterflow TPC demo - tracking bug
The EML actors throw those exceptions - that is expected.
As for the newer HSQLDB - I will take a look.
ben leinfelder
04:05 PM Bug #4159: Cut 2.0-alpha/SanParks release
created branch
http://code.kepler-project.org/code/kepler/branches/release-2.0.0-pre-alpha1-branch/ for the release.
Chad Berkley
03:19 PM Bug #4215: Error when check out provenance with change-to
Fixed, modules.txt was in the wrong directory. Daniel Crawl
07:54 AM Bug #4215 (Resolved): Error when check out provenance with change-to
When I tried to check out the provenance suite this week I got the error:
[change-to] Error: The name you specified ...
Chris Weed
02:11 PM Bug #4216 (New): Problems with the File to Array converter
When attempting to run the "File to Array converter" actor as part of a workflow which creates a text file from the o... Colin Campbell
01:22 PM Bug #4164: Associated Data - wf_exec_id behavior
I checked in hsqldb 1.8 in r19734 and that seems to fix this problem. Closing. Derik Barseghian

06/30/2009

06:40 PM Bug #4164: Associated Data - wf_exec_id behavior
I'd like to move to 1.8 if possible since this bug is going to be pretty bad for users, they'd seemingly have to clea... Derik Barseghian
06:35 PM Bug #4197: Waterflow TPC demo - tracking bug
On my Eclipse build, which is using hsqldb 1.8, I get the same, and some additional errors. Provenance gives an "ERRO... Derik Barseghian
06:24 PM Bug #4197: Waterflow TPC demo - tracking bug
I'm getting a lot of error messages on the console when I open this workflow. It seems to run ok though. (This is whi... Derik Barseghian
04:07 PM Bug #4197: Waterflow TPC demo - tracking bug
-column headers are capitalized.
-header rows are shaded
-overflowing cell contents are truncated
TODO: remove browse...
ben leinfelder
07:48 AM Bug #4197: Waterflow TPC demo - tracking bug
In the tpc02-water-flow-base.xml workflow I have the table rendering in reporting not using the R data2html method no... ben leinfelder
04:44 PM Bug #4212: Report Designer - Clicking the delete button removes unselected items
If nothing is selected, don't delete anything. ben leinfelder
02:59 PM Bug #4212 (Resolved): Report Designer - Clicking the delete button removes unselected items
If nothing is selected on the canvas and I click the delete button, it seems to remove a randomly chosen component. ... Chad Berkley
04:42 PM Bug #4188: Report Designer - Issues with text fields
chad and I do not see this happening anymore ben leinfelder
04:12 PM Bug #4188: Report Designer - Issues with text fields
I think this is fixed now, and we can close this bug, after Ben tests it. debi staggs
10:59 AM Bug #4188: Report Designer - Issues with text fields
just dragging a new text component onto the canvas deletes the text in most of the other text components (but not all... Chad Berkley
10:58 AM Bug #4188: Report Designer - Issues with text fields
*** Bug 4205 has been marked as a duplicate of this bug. *** Chad Berkley
04:40 PM Bug #4209: Report Designer - Text randomly disappears when dragging new components
not seeing this after latest update ben leinfelder
11:04 AM Bug #4209 (Resolved): Report Designer - Text randomly disappears when dragging new components
If you have some text components on the canvas with text in them, then you drag a new component onto the canvas, some... Chad Berkley
04:40 PM Bug #4210: Report Designer - scrollbar goes off the screen
switched to BorderLayout for the tab ben leinfelder
11:07 AM Bug #4210 (Resolved): Report Designer - scrollbar goes off the screen
The scrollbar on the right goes off of the screen so that I can't see the bottom of it. Chad Berkley
04:04 PM Bug #4206: Report Designer - layout in left pane is scrunched up
moved the split pane bar down so that the panel doesn't get crunched. Chad Berkley
10:54 AM Bug #4206: Report Designer - layout in left pane is scrunched up
attaching screenshot of scrunched layout Chad Berkley
10:53 AM Bug #4206 (Resolved): Report Designer - layout in left pane is scrunched up
The panel on the left from which you drag components is too small initially. You have to drag to make it larger. It... Chad Berkley
03:37 PM Bug #4213: Report Designer - north and south labels swap
this appears to be fixed now - north and south are maintained ben leinfelder
03:07 PM Bug #4213: Report Designer - north and south labels swap
The ROML is being serialized to XML corrected (i.e. the label entered for "north" is stored in that label) so it's ju... ben leinfelder
03:02 PM Bug #4213 (Resolved): Report Designer - north and south labels swap
Typically happening with another item is dropped on the layout.
The swap seems to only happen once.
ben leinfelder
03:05 PM Bug #4214 (Resolved): Report Designer - Dragging workflow components near report fields adds text to the fields
If you drag an actor or ports of an actor to the canvas and accidentally drop them into a text field, text from the m... Chad Berkley
02:08 PM Bug #4102: Add the ability to insert a static image into the report.
For this release, this bug can be closed. debi staggs
02:06 PM Bug #4208: Report Designer - dragging from the component window to the canvas does not drop where you want it
There is already a bug entered for this, so this is a duplicate of bug # 4195
*** This bug has been marked as a dupl...
debi staggs
11:01 AM Bug #4208 (Resolved): Report Designer - dragging from the component window to the canvas does not drop where you want it
If you drag a component from the components pane onto the canvas between two components, the new component shows up a... Chad Berkley
02:06 PM Bug #4195: Report Designer - 'Location aware' rendering of newly dropped panels.
*** Bug 4208 has been marked as a duplicate of this bug. *** debi staggs
11:20 AM Bug #4211 (Resolved): Report Designer - do not allow dropping of actors on report
We should only allow "leaves" (ports/parameters) that have no children to be reported on. ben leinfelder
11:18 AM Bug #4103: Add the capability of creating SECTIONS in the report.
we have "section" headers now ben leinfelder
10:58 AM Bug #4205: Report Designer - dragging component makes text disappear
duplicate
*** This bug has been marked as a duplicate of bug 4188 ***
Chad Berkley
10:51 AM Bug #4205 (Resolved): Report Designer - dragging component makes text disappear
When you drag a component around the canvas, the text in the text boxes disappears. It should remain in the dragged ... Chad Berkley
10:56 AM Bug #4176: Report Designer - opening KAR omits title
found the place where the title was being set to blank - fixed it ben leinfelder
10:56 AM Bug #4207 (Resolved): Report Designer - drop area is too small
When dragging components around on the canvas, the drop area is too small so it's hard to get components to go where ... Chad Berkley
10:50 AM Bug #4204 (Resolved): Report Designer - finding drag area on components is hard
It's too hard to find where to click on a report item to drag it around on the canvas. You have to move the mouse ju... Chad Berkley
10:17 AM Bug #4203 (In Progress): use port parameters in web service actors
It would be nice if the inputs to WebService and WSWithComplexTypes were port parameters instead of ports. Daniel Crawl
09:25 AM Bug #4200: wrp suite - blank workflow says you've made changes upon exit
committed this change to provenance ben leinfelder
09:23 AM Bug #4200: wrp suite - blank workflow says you've made changes upon exit
In org.kepler.provenance.gui.ProvenanceConfigureAction.addProvenanceRecorder() there was a call to effigy.setModified... ben leinfelder
08:21 AM Bug #4200: wrp suite - blank workflow says you've made changes upon exit
That sounds like the problem. There should be some way to insert those properties only upon model modification inste... Chad Berkley
07:54 AM Bug #4200: wrp suite - blank workflow says you've made changes upon exit
Reporting an Provenance both inject top level attributes in the model if they do not exist: a ProvenanceRecorder for ... ben leinfelder

06/29/2009

05:54 PM Bug #4201: Cannot set column widths on the Workflow Report Tab
fixed in r19633.
Feel free to tweak the widths.
I had problems when trying to leave auto resize on and set all setP...
Derik Barseghian
05:12 PM Bug #4201: Cannot set column widths on the Workflow Report Tab
You can get the WRM column widths to take effect if you first
wrmjTable.setAutoResizeMode(JTable.AUTO_RESIZE_OFF);
H...
Derik Barseghian
04:37 PM Bug #4201 (Resolved): Cannot set column widths on the Workflow Report Tab
I'm trying to set the widths on the columns for the workflow report pane. The columns refuse to change their widths.... Chad Berkley
04:47 PM Bug #4202 (Resolved): typos in modules.txt are ignored
A line in modules.txt with bad a module/suite name is silently ignored.
An error message should be printed and ant ...
Daniel Crawl
04:34 PM Bug #4164: Associated Data - wf_exec_id behavior
If you're sure that updating isn't going to break anything, go for it. If there is any doubt, don't do it. Chad Berkley
04:32 PM Bug #4164: Associated Data - wf_exec_id behavior
I was seeing this bug again today on linux and mac. Upgrading to hsqldb 1.8 *seems* to solve the bug -- I've been una... Derik Barseghian
04:32 PM Bug #4200 (Resolved): wrp suite - blank workflow says you've made changes upon exit
If you open kepler under the WRP suite, then just quit it immediately, it asks you twice if you'd like to save your c... Chad Berkley
04:31 PM Bug #4199 (Resolved): NPE in org.kepler.moml.NamedObjId
I get the following exception:
java.lang.NullPointerException
at org.kepler.moml.NamedObjId.changeExecuted(Named...
Daniel Crawl
01:44 PM Bug #4198 (Resolved): important sanparks tasks
The following is the minimum functionality required for the code freeze tomorrow.
Client functionality
----------...
Chad Berkley
01:37 PM Bug #4193: ActorMetadata - clone() error when opening workflow from KAR
fixed bug in actormetadata cloning where an exception wasn't getting handled. Chad Berkley
01:05 PM Bug #4193: ActorMetadata - clone() error when opening workflow from KAR
Chad fixed the clone bug. I tested it and it worked under GUI mode. Under
the command line mode, the kar file can ...
Jing Tao
01:06 PM Bug #4197: Waterflow TPC demo - tracking bug
Opening from the exported KAR is causing some problems - that's in another bug.
There are two files for this TPC (in ...
ben leinfelder
01:01 PM Bug #4197 (Resolved): Waterflow TPC demo - tracking bug
Will be using this as a demonstration of the TPC reporting system. Logging development here (might overlap with the t... ben leinfelder
12:59 PM Bug #3992: Report Designer - finalize Report item properties
closing - will add properties as needed ben leinfelder
12:47 PM Bug #3992: Report Designer - finalize Report item properties
i'm going to postpone adding the "repeat labels for all" option and all of the "which token of multiple tokens did yo... ben leinfelder
11:11 AM Bug #4196 (Resolved): Report Designer - Easier to Grab Panels
Need to make it a little easier to grab the report item panels. Because of the border layout in the panels, and the ... debi staggs
11:05 AM Bug #4195 (Resolved): Report Designer - 'Location aware' rendering of newly dropped panels.
Right now, when a user drops a report item onto a report, the report designer simply places the panel at the end (bot... debi staggs
08:59 AM Bug #4102: Add the ability to insert a static image into the report.
this seems to be in the model when i render it - is it "done"? ben leinfelder
08:53 AM Bug #4188: Report Designer - Issues with text fields
retarget to 2a1 release ben leinfelder
08:53 AM Bug #3638: Report design features, Stage 2
this appears to be working now ben leinfelder
08:52 AM Bug #4103: Add the capability of creating SECTIONS in the report.
now rendering this in the report instance ben leinfelder
07:43 AM Bug #4186: Metacat assumes (revision > 1) means "update" not "insert"
committed to svn ben leinfelder

06/27/2009

09:55 AM Bug #4194 (Resolved): Kepler should have the Continous and Modal domains
In Ptolemy II 8.0, we are upgrading the ct domain to the continuous domain
and the fsm domain to the modal domain.
...
Christopher Brooks

06/26/2009

04:51 PM Bug #4192: WRM - do not prompt for KAR file when uploading to repository
Fixed. it now gets the file from CacheManager.getTempFile(). Chad Berkley
04:04 PM Bug #4192 (Resolved): WRM - do not prompt for KAR file when uploading to repository
When you select a run in the workflow run manager, right click, select "Upload" you are prompted to specify a save lo... ben leinfelder
04:51 PM Bug #4193 (Resolved): ActorMetadata - clone() error when opening workflow from KAR
Error:
....blah blah blah....
Caused by: ptolemy.kernel.util.IllegalActionException: Could not find a port named 'o...
ben leinfelder
04:46 PM Bug #4186: Metacat assumes (revision > 1) means "update" not "insert"
i have this working locally - will check into seek (svn) next ben leinfelder
02:48 PM Bug #4186: Metacat assumes (revision > 1) means "update" not "insert"
This is actually in ecogrid. I can see where the check is in the ecogrid implementation.
My plan: check if the id exi...
ben leinfelder
11:48 AM Bug #4186 (Resolved): Metacat assumes (revision > 1) means "update" not "insert"
When trying to upload workflows from Kepler we often (almost ALWAYS) have generated LSIDs that have revision > 1.
Fo...
ben leinfelder
04:33 PM Bug #4191: Eclipse build is slow the first time "Copying resources to the output folder"
The first time Eclipse is used to build Kepler, the build hangs
for several minutes.
I had one user who thought that...
Christopher Brooks
03:57 PM Bug #4191 (Resolved): Eclipse build is slow the first time "Copying resources to the output folder"
I just verified that under Windows, the Eclipse build has errors because
of apple-extension.
David Welker wro...
Christopher Brooks
04:11 PM Bug #2493: actor repository tracking bug
The stuff needed for sanparks is done. pushing to 2.0 release. Chad Berkley
10:35 AM Bug #2493: actor repository tracking bug
in response to comment #9, I fixed the issues with the LSID conflicts on upload (using the uploadToRepository method)... Chad Berkley
02:57 PM Bug #4189: Report Designer - Dynamic Report Item labels are not rendering correctly
I think we can close this bug. debi staggs
02:55 PM Bug #4189: Report Designer - Dynamic Report Item labels are not rendering correctly
This bug has been fixed, the dynamic report item panels are now rendering correctly, and should be correct in the mod... debi staggs
12:22 PM Bug #4189 (Closed): Report Designer - Dynamic Report Item labels are not rendering correctly
After the labels are filled in, and then re-ordered, the dynamic report item panels are not rendering the labels corr... debi staggs
02:55 PM Bug #3942: Report Designer - add/edit item labels
This bug has been fixed, and is now working. debi staggs
12:11 PM Bug #3942: Report Designer - add/edit item labels
We can add the labels, but there is a bug with the labels and the model not being in sync. debi staggs
12:07 PM Bug #3942: Report Designer - add/edit item labels
A custom panel for a dynamic report item has been created that provides text fields in the North, South, West, and Ea... debi staggs
12:29 PM Bug #4190 (Resolved): Report Designer - Create View classes for the Items
Create a 'view' class for each of the dynamic and static item subclasses.
This might help to make it easier to synch...
debi staggs
12:20 PM Bug #4188 (Resolved): Report Designer - Issues with text fields
After a few drag and drop operations the text in the section header panels and the text in the static text panels get... debi staggs
12:17 PM Bug #4103: Add the capability of creating SECTIONS in the report.
We can add sections to the report, and the text is larger and bold for the section headers. debi staggs
12:16 PM Bug #4187 (Resolved): When running with reporting suite, a blank canvas is considered changed and unsaved
When running with the following modules.txt:
wrp
workflow-run-manager
*reporting
if you close a new canvas, i...
Sean Riddle
12:16 PM Bug #4102: Add the ability to insert a static image into the report.
We can insert the static image into a report, get a thumbnail image from the file system, and get the path to that im... debi staggs
12:12 PM Bug #3993: Report Designer - add parameters to the Items of Interest
This bug can be closed, because we changed from adding parameters directly, to allowing the user to add them from the... debi staggs
12:09 PM Bug #3992: Report Designer - finalize Report item properties
I believe that we have finalized the item properties, but not sure if the 'repeat once, 'repeat all' properties are w... debi staggs
11:59 AM Bug #3635: Create ReportItem Type Hierarchy
I am closing this bug, since this was created quite some time ago, although it did not look like the original hierarc... debi staggs
10:53 AM Bug #4185: TabManager acting strangely
WorkflowRunManagerPanel was falsely assuming that calling topLevel() on a model would return a CompositeActor. Inste... Chad Berkley
10:37 AM Bug #4185: TabManager acting strangely
This seems to only happen for WRP. Maybe because there are way more tabs and frames in the WRP interface. I'm seein... Chad Berkley
10:27 AM Bug #4185 (Resolved): TabManager acting strangely
The TabManager is calling intializeTabs() twice. Once at startup and once at shutdown. Each time, the parent arg is... Chad Berkley
10:29 AM Bug #4148: Workflow Run Manager - Upload to Repository feature
okay - i'm happy with this feature closing ben leinfelder
10:22 AM Bug #4148: Workflow Run Manager - Upload to Repository feature
now checking for existing workflows - will not attempt to upload again if it already exists ben leinfelder

06/25/2009

04:46 PM Bug #2493: actor repository tracking bug
We're now using the "repository" for many different things:
-actors
-workflows
-workflow runs
-kars (which might cont...
ben leinfelder
04:43 PM Bug #4169: Build "server-side" installation of Kepler
This now works. The KeplerConfigurationApplication (a non-gui implementation of kepler that also loads a full config... Chad Berkley
04:40 PM Bug #4020: WRP - create WorkflowRun object to encapsulate provenance/report instances
We've got this working as we need it for SANParks ben leinfelder
03:57 PM Bug #4020: WRP - create WorkflowRun object to encapsulate provenance/report instances
using this:
<property name="ReportInstance0"
class="ptolemy.kernel.util.StringAttribute" value="RIO.5.pdf">
might b...
ben leinfelder
04:05 PM Bug #4148: Workflow Run Manager - Upload to Repository feature
I want to add more specific error handling around each of the put() calls so that we know exactly what is happening. ... ben leinfelder
04:03 PM Bug #4148: Workflow Run Manager - Upload to Repository feature
We are allowing for a "-repository" parameter as well. It will let us specify which of the configured Repositories we... ben leinfelder
01:16 PM Bug #4148: Workflow Run Manager - Upload to Repository feature
"-server" is now a commandline option that will set a Configuration attribute. ReportingListener will check this and ... ben leinfelder
04:02 PM Bug #4163: erroneous hsql database creation
I don't see the extra folder anymore, looks good Aaron Aaron
03:59 PM Bug #4163: erroneous hsql database creation
we're now using the cache's hsqldb instance and not doing anything to make a separate provenance database.
i'm closin...
ben leinfelder
04:01 PM Bug #3992: Report Designer - finalize Report item properties
i'm thinking "HIDE" will be a good one too, especially if we want to hide the TPC Status item that we'll be putting o... ben leinfelder
03:47 PM Bug #4176: Report Designer - opening KAR omits title
Just verified that this is still a bug.
My test includes a kar file with a report layout that has a title and two ite...
ben leinfelder
03:42 PM Bug #4001: WRP - Save/Open KARs containing MOMLs and ROMLs
we can do this from within the GUI.
we can do this on the command-line (thanks chad!)
ben leinfelder
03:38 PM Bug #4000: WRP - upload PRAs to repository
we've now done a preliminary upload to indus - this looks good. will refine, but closing this ben leinfelder
02:14 PM Bug #4184: EML 2 Dataset disregarding selectedEntity from XML
was "resetting" too many things in the actor when the recordID was updated (after changing latest version).
now only ...
ben leinfelder
01:19 PM Bug #4149: Workflow Run Manager - Export Runs feature
marking as fixed - for sanparks.
As we extend this feature for REAP, we can add a new bug.
ben leinfelder

06/24/2009

06:12 PM Bug #4184 (Resolved): EML 2 Dataset disregarding selectedEntity from XML
1. Drag an EML 2 Dataset actor onto the canvas and change the selectedEntity field from the initial value.
2. Save t...
Oliver Soong
02:25 PM Bug #4183 (Resolved): Kepler gives error on command+Q
If I run with the following modules.txt:
wrp
workflow-run-manager
*reporting
I get the following error if I e...
Sean Riddle
01:07 PM Bug #4148: Workflow Run Manager - Upload to Repository feature
Looks like derik has this non-gui portion working.
I'm now using his classes (in the provenance module) to do the exp...
ben leinfelder
11:45 AM Bug #4151: exported RIO and ROML doc run-pairs have same KeplerLSID
reading the history - i believe we can close this bug (again) ben leinfelder
10:19 AM Bug #3632: TPC exceedence notification feature
entry in the config.xml allows us to include many report items in the run metadata:
<!-- Reporting configuration -->...
ben leinfelder
08:26 AM Bug #4182: Composite Actor input port tokens not recorded
i guess i'll close this then! ben leinfelder

06/23/2009

06:29 PM Bug #4182: Composite Actor input port tokens not recorded
There is no port event to record. To see this, do a 'Listen to Port' on the composite's input port. Port events do no... Daniel Crawl
05:35 PM Bug #4182 (Resolved): Composite Actor input port tokens not recorded
I have a String Constant actor connected to an input port of a composite actor (see attached) and there is no port ev... ben leinfelder
04:19 PM Bug #3632: TPC exceedence notification feature
Okay - fairly easy to look up values from the ReportInstance.
Now it's just a matter of making a standard report elem...
ben leinfelder
01:53 PM Bug #3632: TPC exceedence notification feature
i'm going to take a stab at extracting a field from the reportinstance (post run) and adding a field to the WorkflowR... ben leinfelder
03:24 PM Bug #4180: Kepler command-line execution with cache
Added to ConfigurationApplication the ability to load a config from the command line. Added a configuration to keple... Chad Berkley
02:51 PM Bug #4180: Kepler command-line execution with cache
Ptolemy now has a baseclass that does not set the look and feel.
The log message says:
-start---
Created base class ...
Christopher Brooks
10:44 AM Bug #4180: Kepler command-line execution with cache
Now works by using the ptolemy.moml.MoMLCommandLineApplication from within org.kepler.loader.Kepler. This should eve... Chad Berkley
07:42 AM Bug #4180 (Resolved): Kepler command-line execution with cache
For the webservice execution implementation, we need to be able to run workflows w/o the gui but with the cache enabl... ben leinfelder
02:30 PM Bug #4174: Actor library not building correctly
yeah, rev 19364 of KarFile was the problem, I've rolled back that change and it is working again. Aaron Aaron
11:07 AM Bug #4174: Actor library not building correctly
Break occurs in r19364, changes to trunk/modules/core/src/org/kepler/kar/KARFile.java:
"subtle correction: if we find...
Derik Barseghian
10:49 AM Bug #4174: Actor library not building correctly
This is now a problem in the kepler suite as well. Chad Berkley
10:47 AM Bug #4174: Actor library not building correctly
Narrowing this down a little: broken in r19366, but not in r19350. Derik Barseghian
01:46 PM Bug #4102: Add the ability to insert a static image into the report.
Can now specify a header image in the ReportLayout (cascades into the rendered version, too).
Not yet a way to specif...
ben leinfelder
01:44 PM Bug #4181: WRM - provenance sql.properties "DB Name" ignored
now pointing to the cache's hsqldb instance (running in server mode).
no longer need to treat the dbname in the prope...
ben leinfelder
08:11 AM Bug #4181 (Resolved): WRM - provenance sql.properties "DB Name" ignored
my sql.properties bundle has a different DB Name setting (so that I can connect to the cache's hsqldb instance).
Whe...
ben leinfelder
10:54 AM Bug #3957: Report Designer - remove items of interest from the list
This bug is being closed because we are switching to using the outline view of the workflow for adding dynamic report... debi staggs
07:48 AM Bug #3672: Open/Save Workflow as KAR Archive
this is not actually a bug about "Opening" a workflow - it has to do with "Importing"
I'd previously misunderstood. R...
ben leinfelder
07:37 AM Bug #3992: Report Designer - finalize Report item properties
[image] width and whether to scale-to-fit are now optional properties on every item. ben leinfelder

06/22/2009

06:13 PM Bug #4138: Workflow Run Manager - search cell edit focus isn't lost appropriately
This was partially fixed with r19403. Cell editors that extend DefaultCellEditor still have the problem. Derik Barseghian
05:46 PM Bug #4174: Actor library not building correctly
Not sure if the problem is still "actor library not building correctly" but I'm not seeing components in the tree in ... Derik Barseghian
05:37 PM Bug #4179: ant jar does not include configs/
Here is the code from line 106:
dirs.add( module.getTargetClasses() );
dirs.add( module.getSrc() );
...
Jing Tao
05:34 PM Bug #4179 (Resolved): ant jar does not include configs/
The jars produced by 'ant jar' do not include any of the files in configs/. Daniel Crawl
05:19 PM Bug #4170: Ensure reporting/provenance do not rely on any GUI classes
as far as reporting is concerned, this is done. need to make sure the -nogui ("withcache") run is working. ben leinfelder
01:42 PM Bug #4170: Ensure reporting/provenance do not rely on any GUI classes
ReportingListener is now added to the MOML model by the Initializer if not already present.
Once the model is saved (...
ben leinfelder
04:31 PM Bug #4122: File -> Save As does not assign new LSID
Save as now assigns a new LSID. Aaron Aaron
04:21 PM Bug #3996: Report Model - [de]serialize Items of Interest
closing this - not needed since we are using the Outline viewer as a source for items of interest ben leinfelder
03:58 PM Bug #3994: Report Designer - use "workflow outline" rather than Items of Interest
now the top portion of the ItemsOfInterestPanel [re]uses the workflow outline view of the workflow contents. you can ... ben leinfelder
03:44 PM Bug #4149: Workflow Run Manager - Export Runs feature
The problem in comment #2 was fixed some time ago. Derik Barseghian
12:23 PM Bug #4178 (Resolved): error handling with MoMLCommandLineApplication
It would be nice if MoMLCommandLineApplication called Manager.run() instead of execute() so that any execution listen... Daniel Crawl

06/19/2009

09:39 PM Bug #3994: Report Designer - use "workflow outline" rather than Items of Interest
This is now a viable source for ports AND parameters.
I'd like to use it as the sole source for Dynamic Report Items.
ben leinfelder
08:17 PM Bug #3994: Report Designer - use "workflow outline" rather than Items of Interest
I've modified the designer panel to allow it to accept dragged objects (NamedObjs) from the outline view.
This is a m...
ben leinfelder
09:27 PM Bug #4177: WRP - look up Parameter values from Provenance
added a method to provenance to look up the type (port/parameter/etc).
using that to decide where/how to retrieve the...
ben leinfelder
08:31 PM Bug #4177 (Resolved): WRP - look up Parameter values from Provenance
Turns out Parameter values are stored differently than the tokens that are passed among actors.
Will need to augment...
ben leinfelder
07:24 PM Bug #2493: actor repository tracking bug
this isn't just for Actors - this is for Workflows. Just want to make sure we're all keeping that in mind.
The same "...
ben leinfelder
05:57 PM Bug #4036: WRM - connect to configurable provenance store
the config dialog is not being shown now - so we don't really need to worry too much about this [for SANParks].
I'm g...
ben leinfelder
05:54 PM Bug #4164: Associated Data - wf_exec_id behavior
I'm unable to get this bug to occur today...but Dan was seeing it today. Derik Barseghian
05:02 PM Bug #4164: Associated Data - wf_exec_id behavior
Examples showing weird behavior of selects on associated_data table Derik Barseghian
05:54 PM Bug #4176 (Resolved): Report Designer - opening KAR omits title
When I:
-design a report layout and "Export to KAR"
-close Kepler
-run Kepler
-open the kar "Open KAR"
I get mos...
ben leinfelder
04:56 PM Bug #3992: Report Designer - finalize Report item properties
augmented the style sheet (XSLT) to handle some Item Properties:
handle:
-new subclasses of StaticReportItem (HR)
-It...
ben leinfelder
03:53 PM Bug #3992: Report Designer - finalize Report item properties
all static report items currently have: HEIGHT and WIDTH properties.
HR Items have only WIDTH.
more to come...
ben leinfelder
03:52 PM Bug #3992: Report Designer - finalize Report item properties
doing some work on this ben leinfelder
12:42 PM Bug #4160: EML - Dynamic data retrieval
Jim has this working in the riverflow tpc.
And I've recently made the "check for latest" feature of EML work as it ne...
ben leinfelder
12:41 PM Bug #3672: Open/Save Workflow as KAR Archive
related to other bug that is slightly reporting-specific.
same functionality, however
ben leinfelder
12:18 PM Bug #3999: WRP - create event-driven states for Kepler
using this to update the Report Viewer when the view is selected. Also alerts the Report View TOC of a report instanc... ben leinfelder
12:15 PM Bug #4172: Use DEV server for registry in the WRP suite
WRP is pointing to dev for:
registry
authentication
repository
ben leinfelder
12:07 PM Bug #4175: EML - Verify check latest revision
tested with the attached workflow - i'm happy with this. ben leinfelder
12:05 PM Bug #4175: EML - Verify check latest revision
NOTE: in order for this to function properly, it must be run in the WRP suite of kepler that currently points to the ... ben leinfelder
12:02 PM Bug #4175: EML - Verify check latest revision
When the EML actor initializes, it will check for the latest and get the latest if the checkbox is selected.
When a W...
ben leinfelder
09:13 AM Bug #4175 (Resolved): EML - Verify check latest revision
Need to make sure this is working correctly when a WF is [re]opened and run.
It needs to pull in any new (or deleted...
ben leinfelder
09:34 AM Bug #4174: Actor library not building correctly
It has been verified that this fix worked and the Components are showing up again in the actor library. Aaron Aaron

06/18/2009

11:36 PM Bug #4174: Actor library not building correctly
It seems that the tagging module is overriding the ontologies. It just so happens that the kepler-component.owl file... Aaron Aaron
09:19 PM Bug #4174 (Resolved): Actor library not building correctly
Many of the actors are not appearing in the actor library when using the WRP suite. No visible errors are given... Aaron Aaron
06:11 PM Bug #4122: File -> Save As does not assign new LSID
We need this to be fixed for the SANParks release...I think this will be pretty confusing for the user. Derik Barseghian
05:15 PM Bug #4160: EML - Dynamic data retrieval
looks like we got this going in terms of getting the existing tables.
next up: check for latest revision!
ben leinfelder
08:38 AM Bug #4160: EML - Dynamic data retrieval
testing this new output format with R actor downstream - looks promising, but deferring to Jim's R expertise to get t... ben leinfelder
05:11 PM Bug #4151: exported RIO and ROML doc run-pairs have same KeplerLSID
I've prepended the workflow name to the ROML.xml entry that is generated.
While it's non-unique, perhaps it's the fir...
ben leinfelder
04:58 PM Bug #4151: exported RIO and ROML doc run-pairs have same KeplerLSID
Okay - that makes more sense: same kar entry name (ROML.xml) but different LSIDs
That'll definitely need to be addres...
ben leinfelder
11:57 AM Bug #4151: exported RIO and ROML doc run-pairs have same KeplerLSID
I thought that too; not aware of any changes to that code.
I think this problem only occurs when you're trying to ex...
Derik Barseghian
11:50 AM Bug #4151: exported RIO and ROML doc run-pairs have same KeplerLSID
i thought we made it so that if they had the same LSID and the same name, we'd only include the last one that was add... ben leinfelder
11:23 AM Bug #4151: exported RIO and ROML doc run-pairs have same KeplerLSID
This breaks the ability to export more than one run, since each run will have a ROML.xml, and an error about duplicat... Derik Barseghian
08:58 AM Bug #4151: exported RIO and ROML doc run-pairs have same KeplerLSID
for the time being, both ROMLs will be included. ben leinfelder
01:54 PM Bug #4172: Use DEV server for registry in the WRP suite
http://dev.nceas.ucsb.edu/registry/services/RegistryService is now providing services that point to DEV (not producti... ben leinfelder
01:28 PM Bug #4172: Use DEV server for registry in the WRP suite
The servers are set up and ready to go.
I'm currently updating the registry entries so that we point to the correct ...
ben leinfelder
01:26 PM Bug #4172 (Resolved): Use DEV server for registry in the WRP suite
For testing and training it will be very useful to have dev.nceas.ucsb.edu and kepler-dev.nceas.ucsb.edu set up as ou... ben leinfelder
01:16 PM Bug #4171: dragging actor to canvas then back to component tree area gives NPE
It looks like this bug is specific to the wrp suite; I don't get it in the kepler trunk or the workflow-run-manager m... Derik Barseghian
01:00 PM Bug #4171: dragging actor to canvas then back to component tree area gives NPE
I can't reproduce this in Ptolemy or Kepler on the Mac under Java 1.5.0_19.
What platform and version of Java are you...
Christopher Brooks
12:03 PM Bug #4171 (Resolved): dragging actor to canvas then back to component tree area gives NPE
I'm getting an NPE when I drag a component out to canvas, don't drop, and then drag it back over the component tree a... Derik Barseghian
12:22 PM Bug #4164: Associated Data - wf_exec_id behavior
I'm looking into this... Derik Barseghian
11:38 AM Bug #4020: WRP - create WorkflowRun object to encapsulate provenance/report instances
So to have an example all in one place, this is what an example workflow-run moml metadata doc. If everyone (e.g. mik... Derik Barseghian
11:11 AM Bug #4161: Develop kepler workflow execution engine
In the client-side GUI version of Kepler we open/run workflows and reports like so:
1-Open KAR (contains the workflow...
ben leinfelder
09:08 AM Bug #4161: Develop kepler workflow execution engine
After discussion with Jing and Derik yesterday:
1-we need to make sure we have a server-side version of Kepler that i...
ben leinfelder
10:56 AM Bug #2493: actor repository tracking bug
I started working on this yesterday. I found major problems with how lsids are assigned when uploading to the reposi... Chad Berkley
10:41 AM Bug #4169: Build "server-side" installation of Kepler
Jing and I are working on figuring out how to deploy kepler for the webservice. The jars for kepler can easily be cr... Chad Berkley
10:18 AM Bug #4169 (Resolved): Build "server-side" installation of Kepler
Sounds like the Kepler webservice uses a snapshot (jar?) of Kepler to execute workflows via the webservice.
For sanp...
ben leinfelder
10:40 AM Bug #4021: KAREntry Handler
We have the following KAREntryHandlers:
-ActorMetadata (for workflows/momls)
-ReportLayout (for ROML)
-ReportInstance...
ben leinfelder
10:28 AM Bug #4170 (Resolved): Ensure reporting/provenance do not rely on any GUI classes
I'm not entirely sure how much of the "GUI" code is ever called when we execute a workflow fromthe command line. But ... ben leinfelder
09:49 AM Bug #4168 (New): User documentation creates bloat in workflows
Currently, the user documentation is copied into every actor instance as the actor is drug to the canvas. The proble... Chad Berkley
09:11 AM Bug #4163: erroneous hsql database creation
retargeting - be good if this was resolved.
I'm also thinking we should change the default provenance store to use th...
ben leinfelder

06/17/2009

07:10 PM Bug #3898: update .kepler instead of removing it between versions
Progress on this bug. The InstanceAuthNamespace is kept at the project root. A configuration directory is now creat... Aaron Aaron
07:00 PM Bug #2493: actor repository tracking bug
I'm starting to upload KARs, sets of metadata docs that point at them (workflows and workflow runs) and sets of acces... Derik Barseghian
06:36 PM Bug #4164: Associated Data - wf_exec_id behavior
I'm still seeing this in wrp, even after a full clean. It seems to consistently begin happening on the third instance... Derik Barseghian
12:37 PM Bug #4160: EML - Dynamic data retrieval
new data output format emits information about each datatable (including the pointer to the cache file).
This allows ...
ben leinfelder

06/16/2009

04:10 PM Bug #4164: Associated Data - wf_exec_id behavior
Also once it starts happening, it seems to happen every time, even new kepler instances. Derik Barseghian
04:07 PM Bug #4164: Associated Data - wf_exec_id behavior
This is what I did, twice, to the same effect, but if it's a race condition I wouldn't be surprised if it was just co... Derik Barseghian
03:53 PM Bug #4164: Associated Data - wf_exec_id behavior
I'm seeing this issue again, reopening. Derik Barseghian
12:13 PM Bug #4164: Associated Data - wf_exec_id behavior
i'm not finding this as a problem - changed a bunch of stuff with how files are written and it seems to be happy now.... ben leinfelder
03:25 PM Bug #4161: Develop kepler workflow execution engine
Here is matt's comment:
<matt> hey jing
<matt> i saw your bugzilla note about retrieving KAR files by LSID
<jing> hi,...
Jing Tao
03:11 PM Bug #4161: Develop kepler workflow execution engine
Of course, adding metacatID is a short term solution. Jing Tao
03:09 PM Bug #4161: Develop kepler workflow execution engine
In execute(workflowID) method, we need to get the kar file from metacat first.
To my understanding. The workflowID w...
Jing Tao

06/15/2009

07:44 PM Bug #4164 (Resolved): Associated Data - wf_exec_id behavior
Derik and I are running into a rather odd problem when querying the ASSOCIATED_DATA table for records. It appears tha... ben leinfelder
06:38 PM Bug #4163: erroneous hsql database creation
I should also mention that I also see the same four files where I would expect to see them, in C:\Documents and Setti... Aaron Aaron
06:34 PM Bug #4163 (Resolved): erroneous hsql database creation
When I run the wrp suite on my windows machine a new directory appears inside of the wrp module directory called "Doc... Aaron Aaron
04:23 PM Bug #4147: Error message with selectable text
It turns out that this fix causes the dialogs to be very wide because
the JTextArea is one line, whereas JLabel wraps...
Christopher Brooks
04:15 PM Bug #3801: open dialog, common places pane has white box instead of text
Assigning this to myself. Christopher Brooks
04:15 PM Bug #3801: open dialog, common places pane has white box instead of text
I'm reopening this bug, there are problems with the code under:
* Windows Server 2003 via Windows Remote Desktop. Ja...
Christopher Brooks
03:53 PM Bug #4162 (New): using the alt key makes menus appear in strange places on OSX
if you do alt-F or alt-E on the mac, the menu shows up on the application window instead of coming down from the menu... Chad Berkley
03:15 PM Bug #4103: Add the capability of creating SECTIONS in the report.
Yes, you are correct, it was identified as a high priority for the first release. In addition, this bug is being work... debi staggs
01:57 PM Bug #4103: Add the capability of creating SECTIONS in the report.
i believe this was identified as a high priority for 2a1. we can retarget if i was mistaken ben leinfelder
03:06 PM Bug #4161 (Resolved): Develop kepler workflow execution engine
Here is the an email from matt:
I think the next stage would be to have you work on
putting together an execution...
Jing Tao
03:04 PM Bug #3672: Open/Save Workflow as KAR Archive
we absolutely need to Save and Open KARs that contain:
-1 workflow (MOML)
-1 report layout (ROML)
ben leinfelder
03:01 PM Bug #3649: determine if Provenance has everything needed by Reporting
we do have all the file artifacts being inserted.
I note the comment about provenance storing things from plotting ac...
ben leinfelder
03:01 PM Bug #4149: Workflow Run Manager - Export Runs feature
Exporting runs where reporting has been used is now broken. I don't know why yet. I get this error:
java.lang.NullPo...
Derik Barseghian
01:28 PM Bug #4149: Workflow Run Manager - Export Runs feature
perhaps split this bug into two - one for the very near 2a1 release and another for the full-REAP/2.0 version? ben leinfelder
03:00 PM Bug #4151: exported RIO and ROML doc run-pairs have same KeplerLSID
In the case where I don't do anything with reporting, I get ROML.xml and ROML.N.xml files. The files are identical an... Derik Barseghian
02:54 PM Bug #3936: Report Viewer - handle Image items
we are able to serialize to the XML file - even better! ben leinfelder
02:48 PM Bug #4160 (Resolved): EML - Dynamic data retrieval
The existing EML actor is able to get the latest revision of a datapackage.
We need to augment EML data access and a...
ben leinfelder
02:30 PM Bug #3992: Report Designer - finalize Report item properties
Some recommendations for 2a1:
Images:
-height/width
-scale-to-fit (either)
HR:
-width
-weight
Labels:
-N/S/E/W
-re...
ben leinfelder
02:28 PM Bug #3957: Report Designer - remove items of interest from the list
leave out of 2a1 - not needed if we use Outline view for the designer ben leinfelder
02:10 PM Bug #3942: Report Designer - add/edit item labels
we definitely need labels for the items ben leinfelder
02:01 PM Bug #4102: Add the ability to insert a static image into the report.
i believe this was also identified as important for the training ben leinfelder
01:56 PM Bug #3994: Report Designer - use "workflow outline" rather than Items of Interest
i'm going to push that this be the approach we take for the 2a1 release. ben leinfelder
01:51 PM Bug #3638: Report design features, Stage 2
The ability to add a section header has already been added. Still need to incorporate them into the report model and... debi staggs
01:40 PM Bug #3638: Report design features, Stage 2
I believe section headers are a must for this 2a1 release.
Headers and footers are more or less already there (the co...
ben leinfelder
01:42 PM Bug #4159 (Resolved): Cut 2.0-alpha/SanParks release
Tasks:
* Cut the release (tag)
* Create installers for mac, windows, linux
* test all 2.0-alpha targeted functi...
Chad Berkley
01:36 PM Bug #3635: Create ReportItem Type Hierarchy
not a 2a1-critical bug. leaving in sanparks release ben leinfelder
01:35 PM Bug #3632: TPC exceedence notification feature
for 2a1 release - we'll be using a "special" report item that will identify a TPC as being Normal or Exceeded. This n... ben leinfelder
01:33 PM Bug #3996: Report Model - [de]serialize Items of Interest
still advocating for shifting our efforts toward an Outline-view-based approach to items of interest.
Leaving this ou...
ben leinfelder
01:32 PM Bug #3995: Report Model - [de]serialize Report Item properties
item properties are being handled as expected ben leinfelder
01:31 PM Bug #4000: WRP - upload PRAs to repository
this overlaps with the KAR upload. almost entirely. maybe even entirely ben leinfelder
01:26 PM Bug #4148: Workflow Run Manager - Upload to Repository feature
crucial for the 2a1 release ben leinfelder
01:25 PM Bug #4036: WRM - connect to configurable provenance store
retarget for release. sounds as though it can be closed [soon]. ben leinfelder
11:37 AM Bug #4144: Workflow Run Manager - moving columns / new windows bug
Fixed in r19238. Refactored to rely on natural jtable mechanisms for tracking movement. Derik Barseghian
11:21 AM Bug #4101: Report Designer - Create a manager class for the Static Report Items
The manager class has been added, though it is likely to need to need additional enhancements. The SWING components ... debi staggs

06/14/2009

09:14 AM Bug #4002: RExpression2 - handle arbitrary R data structures
added handling (from the old RExpression1 implementation) for [un]serializing complex R data objects to disk.
This is...
ben leinfelder

06/12/2009

07:53 PM Bug #4147: Error message with selectable text
Fixed! Christopher Brooks
07:53 PM Bug #4147: Error message with selectable text
I'm lowering the priority of this and changing it to an enhancement because
the code works as expected.
I agree that ...
Christopher Brooks
02:25 PM Bug #4020: WRP - create WorkflowRun object to encapsulate provenance/report instances
Thanks for the help Dan. I'm changing the _elementName of WorkflowRun to be property instead of entity (this probably... Derik Barseghian
10:54 AM Bug #4020: WRP - create WorkflowRun object to encapsulate provenance/report instances
I'm currently getting errors parsing the WorkflowRun moml back from disk using momlparser, and am looking into it.
A...
Derik Barseghian
02:14 PM Bug #4034: "Invalid memory access" when running workflow from the command line
This bug is no longer occurring on the Mac with either kepler.sh or with 'ant run-workflow.' However, kepler.sh does ... David Welker
01:50 PM Bug #4034: "Invalid memory access" when running workflow from the command line
Run the 'ant starupt-script' command to build the kepler.sh file. Not sure if this is still a bug with the new scrip... Chad Berkley
01:40 PM Bug #4034: "Invalid memory access" when running workflow from the command line
Does kepler.sh even exist anymore? I am not finding it in any of the modules I have downloaded. I cannot reproduce th... David Welker
02:04 PM Bug #4153 (In Progress): report-overrides
"ant report-overrides" build target does not include xml files (such as config.xml or configuration.xml). Aaron Aaron
01:59 PM Bug #4152: Modules should be able to add environment variables to the runtime
Added the ability to the build system to parse a $module/module-info/environment.txt file. This file lists the envir... Chad Berkley
01:53 PM Bug #4152: Modules should be able to add environment variables to the runtime
You can, in fact, add env vars to the runtime. We do it for the PATH variable (for JNI on windows). I'm implementin... Chad Berkley
01:50 PM Bug #4152: Modules should be able to add environment variables to the runtime
In Java 1.5 and later the java.lang.System.getEnv() method returns
environment variables.
The Javadoc for getEnv() ...
Christopher Brooks
01:48 PM Bug #4152: Modules should be able to add environment variables to the runtime
Right. It is distinct because it actually needs to load an environment variable. Chad Berkley
01:16 PM Bug #4152: Modules should be able to add environment variables to the runtime
Just so I understand this correctly, this is a distinct use case from setting System properties, correct? So, if you ... David Welker
01:09 PM Bug #4152 (Resolved): Modules should be able to add environment variables to the runtime
Modules such as R sometimes need to add environment variables to the runtime. R needs the R_HOME variable set in ord... Chad Berkley
01:40 PM Bug #4040: make a new module called globus to host globus actors and needed packages.
The old actors are being tested with globus environments, new globus actors are also being implemented and tested. jianwu jianwu
01:30 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
Forgot to close the bug with the last comment. David Welker
01:30 PM Bug #4091: Make it so the build system can use a "blessed" version of Ptolemy.
This functionality is now fully implemented. David Welker
01:29 PM Bug #4108: Do more extenstive testing before designating a revision of Ptolemy as stable
I am not sure that more extensive testing is really necessary. There have been very few developer problems associated... David Welker
01:28 PM Bug #4090: You should be able to specify a particular revision number or date with ant update.
You can now specify not only a particular revision, but also a particular date as well. This is documented in the bui... David Welker
01:27 PM Bug #4089: Ensure that module-manager, loader, and the build system all work with a new versioning system for modules.
All of these systems now work with the new versioning system. David Welker
01:25 PM Bug #4088: Create new configuration system
I am working on the configuration system now. It will be done post Sans Park release. David Welker
01:23 PM Bug #3947: Create a module manager
The module manager now works adequately for the purposes of the Sans Parks and 2.0 releases. I am closing this bug. David Welker
12:25 PM Bug #4151: exported RIO and ROML doc run-pairs have same KeplerLSID
now generating a new LSID when the reportInstance is assembled from provenance data ben leinfelder
12:05 PM Bug #4151 (Resolved): exported RIO and ROML doc run-pairs have same KeplerLSID
Exported RIO and ROML doc run-pairs have the same KeplerLSID. Try exporting a run from the WRM and then open up the k... Derik Barseghian
11:41 AM Bug #4087: No reset/x button to clear component searches
No objections on this proposal, so I plan to do it once many more important tasks are complete. Derik Barseghian
11:39 AM Bug #4150 (Resolved): Save in Library broken
Save in Library is giving me problems:
[run] Exception occurred during event dispatching:
[run] java....
Derik Barseghian
11:32 AM Bug #4047: Remove Component doesn't work
This is broken again.
[run] java.io.InvalidClassException: org.kepler.kar.KARFile; no valid constructor
[...
Derik Barseghian
11:22 AM Bug #4149 (Resolved): Workflow Run Manager - Export Runs feature
WRM needs to be able to Export Runs from a gui context menu, or without a gui by just accepting a list of run lsids. ... Derik Barseghian
11:16 AM Bug #4148: Workflow Run Manager - Upload to Repository feature
This also needs to be able to work without a gui, hopefully by just requiring a list of keplerlsids of runs to upload. Derik Barseghian
11:14 AM Bug #4148: Workflow Run Manager - Upload to Repository feature
That should read: "We also need to change to using setAccess". Derik Barseghian
11:10 AM Bug #4148 (Resolved): Workflow Run Manager - Upload to Repository feature
WRM needs to be able to upload runs to the repository. A user selects rows in the WRM and from a context menu clicks ... Derik Barseghian
 

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