Project

General

Profile

Activity

From 08/02/2009 to 08/31/2009

09/01/2009

08:40 PM Bug #4361: Workflow Run Manager column "Workflow Name" can be confusing
These naming issues are at least partly due to the change from saving plain XML files to saving KAR files that wrap t... Matt Jones
07:44 PM Bug #4361: Workflow Run Manager column "Workflow Name" can be confusing
What are the constraints, between those two names, i.e. (1) the filename, and (2) the workflow name as specified in t... Bertram Ludaescher
06:47 PM Bug #4355: unexpected workflow appears in provenance after WRM run deletion
I've fixed this locally, but want to run it by dan before check-in. Derik Barseghian

08/31/2009

04:41 PM Bug #4361 (New): Workflow Run Manager column "Workflow Name" can be confusing
This is a general problem with workflow naming that seems to come up here. Consider two of the attachments to http:/... Oliver Soong
04:33 PM Bug #4360 (New): Kepler gets slow under XP
I've been holding off on this, because it's hard to demonstrate, OS-specific, and quite difficult to debug, but it's ... Oliver Soong
04:22 PM Bug #4359 (Resolved): Model Reference causes String index out of range error in variable setter
I wanted to use the model reference actor. It was suggested to use the Variable Setter actor to put port data into a... Oliver Soong
03:15 PM Bug #4358 (New): variable setter seems to lock Kepler in the wrapping up stage of a workflow
Running the attached workflow seems to cause Kepler to freeze at Wrapping Up. I'm not sure if I just need to wait (f... Oliver Soong
03:03 PM Bug #3672: Open/Save Workflow as KAR Archive
I just tried a Save as KAR then Open KAR and got a ClassCastException: looks like we're expecting a KarEntry (a subcl... ben leinfelder
02:41 PM Bug #4357 (Resolved): Workflow Run Manager does not mark last failed execution red
The workflow run manager is supposed to highlight failed executions in red. If I run a workflow and it fails, though... Oliver Soong
01:05 PM Bug #4355 (Resolved): unexpected workflow appears in provenance after WRM run deletion
Unexpected Unnamed1 workflow show up after run-deletion via WRM.
To reproduce:
1) launch kepler using wrp suite
...
Derik Barseghian
11:46 AM Bug #4354 (New): Enable the build system to work on multiple SCM systems.
The build system currently does many tasks using SVN. However, it is possible that in the future we may want to suppo... David Welker
11:26 AM Bug #4353 (Resolved): Update publishing to allow for patches.
It needs to be possible to patch modules deployed in the field. Such patches should be installed by default (i.e. a p... David Welker

08/29/2009

12:57 PM Bug #4282: Duplicate of ptolemy.gui.Top
FYI, I've updated the loader so you can start Ptolemy from the command line:
./kepler.sh -vergil [model.xml]
Daniel Crawl
02:18 AM Bug #4282: Duplicate of ptolemy.gui.Top
For instructional and educational purposes I found it useful to be able to switch to Ptolemy from Kepler, not least b... Bertram Ludaescher
02:31 AM Bug #4351 (Resolved): ant netbans fails due to missing file
During ant netbeans, exveption is thrown:
[netbeans] java.io.FileNotFoundException: /home/michalo/kepler/build-are...
Michal Owsiak
01:00 AM Bug #4350 (Resolved): Integrity constraint violation - no parent SYS_FK_59 table - during _first_ startup
During Kepler startup - from Eclipse project, following error occurs.
NOTE! This error occurs during first start-u...
Michal Owsiak

08/28/2009

04:36 PM Bug #4348: Metacat authenticated query is case sensitive, unauthenticated is not
actually - i'll go ahead and mark this as fixed since only the server portion of the ecogrid needs to be redeployed -... ben leinfelder
04:30 PM Bug #4348: Metacat authenticated query is case sensitive, unauthenticated is not
This is actually a modification in the seek/ecogrid project.
I've made the change to the the XSLT that generates te m...
ben leinfelder
01:15 PM Bug #4348 (Resolved): Metacat authenticated query is case sensitive, unauthenticated is not
This is just confusing. The unauthenticated query is not case sensitive (kruger and Kruger both return the same 37 r... Oliver Soong
04:31 PM Bug #4087: No reset/x button to clear component searches
It's like having a play/pause button on a music player. Stopwatches usually have a start/stop button. In my mind, i... Oliver Soong
03:40 PM Bug #4087: No reset/x button to clear component searches
Hi Oliver, off the cuff having a search button that does both search and cancel doesn't feel right to me. I see how i... Derik Barseghian
03:46 PM Bug #4349 (Resolved): clicking Cancel after Data search gives errors.
If you search for aphid on the Data tab, click Cancel on all the pop-up dialogs (there are other bugs here), and then... Derik Barseghian
12:49 PM Bug #4248: export dialogs should show default extension
fixed in r20488 Derik Barseghian
10:54 AM Bug #4323: Add the "send to back" menu to kepler
I've enabled the Bring to Front and Send to Back menu items for actors and attributes.
I tried it for directors, bu...
Daniel Crawl
10:25 AM Bug #4010: RExpression2 - tracking for backwards compatibility
all the objects are removed when the next R actor starts to [re]use the "R engine" so only objects sent through token... ben leinfelder
05:55 PM Bug #4010: RExpression2 - tracking for backwards compatibility
One question that I'm not sure of. Are created variables being cleaned between instances of R? Variable passing sho... Oliver Soong
05:06 PM Bug #4345: KAR/Module documentation
https://kepler-project.org/developers/teams/framework/kepler-archive-kar/questions-and-answers Aaron Aaron

08/27/2009

04:58 PM Bug #4010: RExpression2 - tracking for backwards compatibility
That works! ben leinfelder
04:42 PM Bug #4010: RExpression2 - tracking for backwards compatibility
Yup. It should parse and eval the file in .GlobalEnv as if it were typed in interactively. I don't think we need an... Oliver Soong
04:00 PM Bug #4010: RExpression2 - tracking for backwards compatibility
just:
source(filename)
you think?
ben leinfelder
03:56 PM Bug #4010: RExpression2 - tracking for backwards compatibility
With regards to Comment #5, why not just write the script to file, then have JRI eval a source command. R will handl... Oliver Soong
02:06 PM Bug #4010: RExpression2 - tracking for backwards compatibility
Testing JRI with the SANParks TPC workflows. Because of how the R code is sent to JRI and executed, we have to do som... ben leinfelder
03:52 PM Bug #1750: Allow KAR files to include jar/class files
Currently evaluating the necessity of this based on further documentation and group discussion. Aaron Aaron
08:58 AM Bug #1750: Allow KAR files to include jar/class files
Seems this is a long standing issue that requires further discussion.
Any pointers to design documents or similar?
...
Bertram Ludaescher
02:57 PM Bug #4299: Kepler needs to be evaluated to determine when native (AWT) widgets would be preferable to Swing widgets.
major gui changes postponed to after 2.0. Daniel Crawl
02:57 PM Bug #4347 (Resolved): Reminder "bug" for manual testing before 2.0 release
Before release, we should devote some time for manual testing--e.g. test some other developer's area of Kepler, looki... Derik Barseghian
02:55 PM Bug #4295: Create advanced toolbar support.
major gui changes postponed to after 2.0. Daniel Crawl
02:11 PM Bug #4346 (Resolved): Searching for Saved Archive (KAR) workflow in default workflow folder gives error
If I make a workflow, then Save Archive (KAR) and save it into a kar (giving it some semantic type) into the new defa... Derik Barseghian
02:04 PM Bug #4345 (Resolved): KAR/Module documentation
need to document exactly what a module is and what a KAR is and how they relate
-- can a KAR go in a module, or vic...
Aaron Aaron
01:29 PM Bug #4344 (Resolved): Open Workflow from library
Currently you can open a KAR file by right clicking on it in the library and opening it. Also want to be able to ope... Aaron Aaron
10:57 AM Bug #4343 (Resolved): remove the full screen button
The full screen button on the toolbar does nothing and should be removed before the 2.0 release.
Bug 2369, comment...
Daniel Crawl
10:28 AM Bug #4282: Duplicate of ptolemy.gui.Top
"Being able to invoke vergil from the build system is separate functionality
from being able to invoke the module man...
David Welker
10:21 AM Bug #4282: Duplicate of ptolemy.gui.Top
Though overrides are not technically "bugs," they do represent the potential for many true bugs in the future. We ha... Chad Berkley
09:47 AM Bug #4282: Duplicate of ptolemy.gui.Top
Being able to invoke vergil from the build system is separate functionality
from being able to invoke the module mana...
Christopher Brooks
09:33 AM Bug #4282: Duplicate of ptolemy.gui.Top
Christopher -
An override is not a bug. That you entered it into Bugzilla does not change that.
You may be right (...
David Welker
09:00 AM Bug #4282: Duplicate of ptolemy.gui.Top
The point is that the duplicate version of Top is a bug that was added
for functionality that no one uses, which is t...
Christopher Brooks
05:14 AM Bug #4282: Duplicate of ptolemy.gui.Top
A hook allowing the extension of ptolemy rather than an override is fine.
I think I was more responding to the view ...
David Welker
11:27 PM Bug #4282: Duplicate of ptolemy.gui.Top
The functional changes needed in Top should just be refactored as extensions to the existing Top so that they can coe... Matt Jones
07:16 PM Bug #4282: Duplicate of ptolemy.gui.Top
(In reply to comment #1)
> Get rid of override in ptII
>
I am not sure what the substance of this reply is. I think...
David Welker
06:50 PM Bug #4292: Menu items should display the same icon as buttons with the same functionality.
Will the 2.0 config system allow this to be done in 2.x.y, or does this sound more like a 3.0 feature?
Bertram Ludaescher
06:43 PM Bug #4310: ValueListeners receive valueChanged events when values have not changed
getValueAsString sounds like a "read only" activity, so I understand that a "valueChanged" event is a surprise, if no... Bertram Ludaescher
06:27 PM Bug #4316: re-evaluate how kars are managed in the build and runtime
Can someone post here a link to any further documentation about how the "KAR system" is supposed to work? Then we cou... Bertram Ludaescher

08/26/2009

04:52 PM Bug #4342 (Resolved): apple-extensions module on windows make Eclipse build difficult
on windows
check out a fresh kepler suite
do an "ant eclipse" command
import modules to eclipse (except for the ap...
Aaron Aaron
04:26 PM Bug #4320: Component Library Folders and Popup Menus
Look, it's different now, if a delete function worked when everything was stored in the database then it's probably n... Aaron Aaron
04:18 PM Bug #4320: Component Library Folders and Popup Menus
Kepler used to have at least some of these functions, such as the ability to delete a component from the Library. Se... Matt Jones
04:14 PM Bug #4150: Save in Library broken
Evaluate whether there are any issues getting actors to save as KAR and show up in Library. If not, close this bug. Matt Jones
04:10 PM Bug #4321: Semantic types on workflows saved into library not searchable
This problem is a regression from previous functioning behavior, likely related to changes in how the library indices... Matt Jones
04:06 PM Bug #4330: common/resources/configurations/config.xml gets modified during build or run
This should get fixed when the configuration system gets reworked. Chad Berkley
03:59 PM Bug #4104: Need resource manager to handle objects in the resources directories
It's pretty easy to get resources from the resources directory right now, so this could be revisited when we talk abo... Chad Berkley
03:58 PM Bug #4334: Rename actor from canvas
Opening the 'Rename' dialog before saving the KAR is not mandatory. Aaron Aaron
03:42 PM Bug #4334: Rename actor from canvas
I agree with Derik that we need to normalize this user experience so that saving uses the familiar paradigm. Having ... Matt Jones
03:03 PM Bug #4334: Rename actor from canvas
Isn't popping up a Save As dialog when a file has never been saved and still has a default name normal and expected? ... Derik Barseghian
01:49 PM Bug #4334: Rename actor from canvas
This is an enhancement, though I understand that some might see the extra
dialog box that is popped up as a bug.
Christopher Brooks
11:34 AM Bug #4334 (Resolved): Rename actor from canvas
Add "Configure Name" right-click functionality to canvas. This allows a user to change the default name of a workflo... Aaron Aaron
03:54 PM Bug #4341 (New): rearrange the actors module into smaller modules
I'll create a list of proposed modules for the actors currently all lumped together in the actors module. The new mo... Chad Berkley
03:37 PM Bug #4056: create developer documentation for svn configuration.
Moving the documentation of the problem to post 2.0.0 is fine, but
if you ship 2.0.0 under Linux, then it looks like ...
Christopher Brooks
03:19 PM Bug #4056: create developer documentation for svn configuration.
This is a documentation problem where we need to improve developer documentation to instruct people to use an svn con... Chad Berkley
03:30 PM Bug #4316: re-evaluate how kars are managed in the build and runtime
Several people do not think that kars should be checked into SVN so there needs to be a discussion amongst stake hold... Chad Berkley
03:28 PM Bug #4247: Application menu items sometimes disappear on OS X
I am able to reproduce this bug following the steps in comment #4 (on my mac). Daniel Crawl
02:07 PM Bug #4247: Application menu items sometimes disappear on OS X
Derik, could you repro this bug on a different machine than your mac? If so, could you recomment here and tell us ho... Chad Berkley
03:13 PM Bug #3801: open dialog, common places pane has white box instead of text
moving to 2.x.y because fixing 4282 will handle most of the problems. fix the gui problems after the 2.0 release. Chad Berkley
03:13 PM Bug #3801: open dialog, common places pane has white box instead of text
Fixing 4282 will fix this bug. Chad Berkley
03:12 PM Bug #4273: Ctrl+E operates on mouse position, not selection
I just tried it and it happens to me too, using head, on both mac and linux. Derik Barseghian
03:08 PM Bug #4273: Ctrl+E operates on mouse position, not selection
Verify this. If it is a bug, look into the ptolemy handler that handles this event. Chad Berkley
03:12 PM Bug #4282: Duplicate of ptolemy.gui.Top
Get rid of override in ptII Chad Berkley
02:58 PM Bug #4285: workflow canvas does not repack to fill empty space when top window is resized
Verify which jvm/window manager/OS this occurs on. Have not seen this on windows or OSX. If this is not widespread ... Chad Berkley
02:52 PM Bug #4324: ptII/module-info/revision.txt not being updated
The revision.txt file needs to be updated each night if the ptII build succeeds. I was under the impression that thi... Chad Berkley
02:52 PM Bug #4310: ValueListeners receive valueChanged events when values have not changed
Calling getValueAsString on Distributor.input_tokenConsumptionRate always generates a value changed event. Daniel Crawl
02:26 PM Bug #4310: ValueListeners receive valueChanged events when values have not changed
The implications for this are not clear. Sounds like it is a serious bug that should be fixed, but we need a more de... Matt Jones
02:49 PM Bug #4292: Menu items should display the same icon as buttons with the same functionality.
Moving GUI enhancements to 2.x.y Chad Berkley
02:48 PM Bug #4333: KeplerLSID AuthNamespace web service
This should be installed and maintained as part of the kepler repository. This functionality should be added to that... Chad Berkley
11:16 AM Bug #4333 (Resolved): KeplerLSID AuthNamespace web service
Currently Kepler is pinging my desktop machine to get a unique authority and namespace. We should create a more robu... Aaron Aaron
02:44 PM Bug #4340 (Resolved): Resolve KAR file/module format
We need to resolve the differences between the KAR file format and the module format because we have two different wa... Chad Berkley
02:43 PM Bug #4294: Kepler should meet established accessibility guidelines.
Moving GUI upgrades to 2.X.Y. Matt Jones
02:39 PM Bug #4314: exception when searching ecogrid
Verify this is still happening, close this bug if not. Chad Berkley
02:36 PM Bug #4311: Build system appears to lock if there is a conflict upon update
Conflicts are common when multiple people work on a file. This needs to get fixed for 2.0. Need to provide a way f... Matt Jones
02:34 PM Bug #4281: ant update produces message about running svn cleanup
This happens on any platform when SVN doesn't complete an operation successfully and leaves the working copy in a loc... Matt Jones
02:28 PM Bug #4219: "Kepler Repositories" should be retrieved from the registry
This can be done via an upgrade to the ecogrid module and so should be able to be handled in a module-specific releas... Matt Jones
02:23 PM Bug #4287: Separate user error messages from developer error messages.
Pushing to 2.x.y when we will make other gui changes. Chad Berkley
02:22 PM Bug #2493: actor repository tracking bug
Need to verify that saving to the repository is working seamlessly for both Uploading components and workflows, as we... Matt Jones
02:18 PM Bug #3672: Open/Save Workflow as KAR Archive
Import/Export of KARs is now really the Save function, so should be named as such in the menus. Plus complete items ... Matt Jones
02:16 PM Bug #4312: Clicking cancel on "sure you want to exit" dialog exits anyway
This bug can cause you to lose your workflow if you accidentally quit kepler, then try to cancel quitting. Chad Berkley
02:05 PM Bug #4338: need to review usability and gui of module manager
We also need to check to make sure that the module manager can successfully upgrade existing modules without breaking... Chad Berkley
01:32 PM Bug #4338 (Resolved): need to review usability and gui of module manager
The module manager is complete and functioning, but has not been reviewed by the broader community. Because it is a ... Matt Jones
02:01 PM Bug #4179: ant jar does not include configs/
Ptolemy requires configs to be at the root in the common module. In general we want all resources like configs to go... Matt Jones
01:52 PM Bug #4339 (New): build system needs to provide more information on modules
The build system has a 'describe' task that will svn cat the description.txt file of any module. This is a good star... Chad Berkley
01:35 PM Bug #4246: Reorganize code in util, core and gui modules
add a page to the wiki to describe the new module structure and what packages/functionality go into which module. Chad Berkley
09:07 AM Bug #4246: Reorganize code in util, core and gui modules
newly created modules from util module classes:
data-handling
ssh
io
job
component-library
repository
Chad Berkley
01:18 PM Bug #3898: update .kepler instead of removing it between versions
Progress has been made, but there's still work to be done. There are two main directories in which things can be sto... Matt Jones
01:10 PM Bug #4337 (Resolved): 1.0 -> 2.0 upgrade issues tracking bug
We need to come up with a set of issues to handle the upgrade between kepler 1.0 and kepler 2.0. The upgrade path sh... Chad Berkley
01:01 PM Bug #1750: Allow KAR files to include jar/class files
This issue needs clarification as to why the module format and the kar format need to be separate. It seems that bot... Chad Berkley
12:50 PM Bug #3948: Create new configuration system supporting modules
This bug now focuses exclusively on creating a new configuration system for
managing configuration properties. It do...
Matt Jones
12:46 PM Bug #4336 (Resolved): Merge the old configuration systems
Migrate existing configuration files to use the new configuration system described in bug 3948. Functionality should... Chad Berkley
11:42 AM Bug #4335 (Resolved): Component Library icons do not show correctly after searching
The icons in the component library do not show up correctly after searching for a component. This seems to be a prob... Aaron Aaron

08/25/2009

01:45 PM Bug #4330 (Resolved): common/resources/configurations/config.xml gets modified during build or run
common/resources/configurations/config.xml
gets modified at some point in the build or run.
module directories ar...
Aaron Aaron
11:50 AM Bug #3898: update .kepler instead of removing it between versions
Rick Moore writes:
Turns out that DBConnectionFactory gets it's path from DotKeplerManager. Here are the files/lines...
Christopher Brooks
11:27 AM Bug #3898: update .kepler instead of removing it between versions
This bug was discussed in kepler-users:
Ben Leinfelder writes:
> Rick,
> The path is specified in DBConnectionFacto...
Christopher Brooks
05:58 PM Bug #4302: display actor window does not rename
I fixed this.
Note that the Plotters, the MatrixViewer and the InteractiveShell all
had similar issues.
My solution ...
Christopher Brooks
05:57 PM Bug #4302: display actor window does not rename
This bug can be reproduced in Ptolemy. I'm lowering the priority slightly
and about to fix it.
Christopher Brooks

08/24/2009

11:27 AM Bug #4197: Waterflow TPC demo - tracking bug
now using OrderedRecordTokens and OrderedRecordAssembler to do things "correctly" (no ptolemy overrides) ben leinfelder
10:02 AM Bug #4246: Reorganize code in util, core and gui modules
Forgot to mention in the last comment that I also created a opendap module for the opendap functionality. Other modu... Chad Berkley

08/22/2009

06:23 PM Bug #4325: Workflow Run Manager - deleted runs sometimes reappear after Kepler relaunch
Now I'm unable to reproduce the error from the procedure in comment #2, even though I'd done it a few times. Maybe so... Derik Barseghian
06:08 PM Bug #4325: Workflow Run Manager - deleted runs sometimes reappear after Kepler relaunch
If you:
- Launch Kepler
- Run a workflow twice.
- Export the 2nd run.
- Delete the 2nd run
- Close and relaunch, the ...
Derik Barseghian
05:53 PM Bug #4325: Workflow Run Manager - deleted runs sometimes reappear after Kepler relaunch
Also: If instead of deleting the third run, you delete the second run (the one you exported), and then close and rela... Derik Barseghian

08/21/2009

04:33 PM Bug #4132: Workflow Run Manager - Open in New Window is just opening the workflow, not the ROML or report
I remembered why I've been punting on this: the dependency issues. When opening a run via the workflow-run-manager, i... Derik Barseghian
11:54 AM Bug #4328 (New): change-to command checks out across branches
If kepler is currently in a branch, the change-to command should not update from the trunk. Once a branch is selecte... Chad Berkley
10:48 AM Bug #4327 (New): Workflow Run Manager - ability to import run archives
Workflow Run Manager needs ability to import archives.
For example:
User A runs a few workflows a few times, export...
Derik Barseghian
10:42 AM Bug #4246: Reorganize code in util, core and gui modules
Did a major reorg of util. Created 4 new modules: ecogrid, gui, authentication and authentication-gui. Moved most, ... Chad Berkley
02:49 AM Bug #4326 (Resolved): External Executor actor puts out an extra token when nonzero return
If you have a external execution actor with PN director, and the external execution actor calls a script, say...
#...
Tirath Ramdas
06:49 PM Bug #4136: Workflow Run Manager - date and duration search should allow single operator-less arguments
Changing this to an enhancement request -- single operator-less queries are disabled so user can no longer get these ... Derik Barseghian
05:18 PM Bug #4231: Workflow Run Manager - failed runs should be highlighted red
All errors for an execution are now placed in the WorkflowRun class. The serialized form probably needs to be improve... Derik Barseghian
05:14 PM Bug #4325 (Resolved): Workflow Run Manager - deleted runs sometimes reappear after Kepler relaunch
To reproduce:
- Launch Kepler
- Run a workflow twice.
- Export the 2nd run.
- Run the workflow again.
- Delete t...
Derik Barseghian
05:11 PM Bug #4140: Workflow Run Manager - delete runs functionality needs to be written
Going to open a new bug for issue in #5, closing.
Derik Barseghian

08/20/2009

03:51 PM Bug #3925: ant run does not always work from paths with spaces
I think this actually got fixed some revision in the past. At least, it works for me now. Oliver Soong
12:02 PM Bug #4324 (Resolved): ptII/module-info/revision.txt not being updated
The bug is that ptII/module-info/revision.txt has not been updated since
August 3. The problem is that the Kepler t...
Christopher Brooks

08/19/2009

10:49 AM Bug #4246: Reorganize code in util, core and gui modules
Util module todos:
-Move ecogrid classes to their own module. This includes org.ecoinformatics.seek.ecogrid.*, org....
Chad Berkley

08/18/2009

04:17 PM Bug #4319: LibraryManager
I could easily be wrong about this and it could be a bug.
However, it is worded like an enhancement. To me, a bug is...
Christopher Brooks
12:22 PM Bug #4319: LibraryManager
The bug here was just poor API design (or more likely an unfinished API). The library was dependent solely on the li... Aaron Aaron
07:47 AM Bug #4319: LibraryManager
This looks interesting, though it seems to be a feature request?
There could be a bug here, it should be stated more ...
Christopher Brooks
03:18 PM Bug #4002: RExpression2 - handle arbitrary R data structures
tests the various structures are transferred by the JRI implementation. ben leinfelder
03:14 PM Bug #4002: RExpression2 - handle arbitrary R data structures
in the example cases given, all but the structure produced by ~ were transferred from one R actor the the other.
Thi...
ben leinfelder
02:46 PM Bug #4278: Changes to a reopened KAR are not saved to the new KAR
Also tried saving the modified workflow to a different .kar file, but the changes are still lost when i open the new ... ben leinfelder
01:27 PM Bug #4246: Reorganize code in util, core and gui modules
Removed the last gui class from core. Now moving on to reorganize util. Hopefully will move all gui classes into th... Chad Berkley
12:49 PM Bug #4323 (In Progress): Add the "send to back" menu to kepler
Ptolemy has an appearance/send to back menu that is not in kepler. We should add this and similar menus to the keple... Chad Berkley
12:06 PM Bug #4320: Component Library Folders and Popup Menus
Shawn, Kepler's library is now built from KAR files stored on disk in folders referred to as "Local Repositories". T... Aaron Aaron
10:43 AM Bug #4320: Component Library Folders and Popup Menus
Addressing Christopher's comment, I think what this makes this entry "bug-ish" is that the Component Library looks li... Timothy McPhillips
07:57 AM Bug #4320: Component Library Folders and Popup Menus
I think this also assumes components are fundamentally stored on disk, and if stored on disk, in a meaningful place. ... Shawn Bowers
07:45 AM Bug #4320: Component Library Folders and Popup Menus
I think this is a feature request, not a bug.
A bug is behavior of a currently implemented feature that does not work...
Christopher Brooks
11:41 AM Bug #4322: Attempting to save changes to a workflow saved in a KAR file fails
It should prompt you to resave it in the KAR from which it originally came. If you don't want to overwrite that exist... ben leinfelder
11:32 AM Bug #4322 (Resolved): Attempting to save changes to a workflow saved in a KAR file fails
The following fails:
1) Create new workflow
2) Instantiate a Constant actor
3) Right click on canvas and Save Ar...
Sean Riddle
11:25 AM Bug #4321 (Resolved): Semantic types on workflows saved into library not searchable
Assigning semantic types to a workflow is recommended when saving it into a KAR file (where it is then visible in the... Sean Riddle
10:13 AM Bug #4305: Move actor classes into the actors module
All actors in util, common and core have now been moved to the actors module. There are no director classes in keple... Chad Berkley
09:10 AM Bug #4285: workflow canvas does not repack to fill empty space when top window is resized
*** Bug 4297 has been marked as a duplicate of this bug. *** Christopher Brooks
09:10 AM Bug #4297: Kepler needs a new layout manager.
Duplicate of
http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4285
*** This bug has been marked as a duplicate of ...
Christopher Brooks
09:08 AM Bug #4297: Kepler needs a new layout manager.
We should follow the Java i18n standard of managing internationalization
strings, see
http://java.sun.com/javase/tech...
Christopher Brooks
09:01 AM Bug #4291: The main menu bar should not change based on the location of focus.
I believe this is a Mac OS X specific bug, so I'm changing the Hardware and OS.
I'm also lowering this in priority be...
Christopher Brooks
08:30 AM Bug #4290: Separate the GUI from the execution engine.
Ptolemy has always made a distinction between the execution engine and
the GUI. Clearly defining any issues in Keple...
Christopher Brooks
08:23 AM Bug #4289: Develop strategy for using assertions in the GUI
Using more assertions, perhaps combined with a speed/safety strategy would be
useful.
I'm marking this as an enhancem...
Christopher Brooks
08:22 AM Bug #4288: Develop GUI error handling strategy.
Having some exceptions that cause immediate failure and some that allow
execution to continue is an interesting resea...
Christopher Brooks
08:08 AM Bug #4287: Separate user error messages from developer error messages.
The way to fix this bug is that each time a nonsensical error message
appears, then we need to know what the stack t...
Christopher Brooks

08/17/2009

02:30 PM Bug #2963: Add data structure for tabular data and associated metadata
I've introduced an OrderedRecordToken to ptolemy - it preserves the original order of the RecordToken.
Unfortunately ...
ben leinfelder
02:15 PM Bug #4037: WRM - connect to Kepler-wide configurable provenance store
Provenance configuration is now using the cache's HSQLDB and is not configurable by a normal user (developers can cha... ben leinfelder
12:09 PM Bug #4320 (Resolved): Component Library Folders and Popup Menus
The Component Library is the most used graphical component in Kepler. It is in essence the "Control Panel" for build... Aaron Aaron
11:52 AM Bug #4319 (Resolved): LibraryManager
The Component library was being built with an Index which made it difficult to dynamically add and remove components ... Aaron Aaron
11:22 AM Bug #4141: EML 2 Dataset breaks when data table has 2 columns with the same name
appending "_n" for duplicate Attribute names. ben leinfelder
08:46 AM Bug #4310: ValueListeners receive valueChanged events when values have not changed
We need a test case for this. Christopher Brooks
08:42 AM Bug #4306: add command line params to the configuration
Here's some email about this. Note that adding a separate CommandLineArgs
solution might not work with PN:
Colin wr...
Christopher Brooks
08:37 AM Bug #4306: add command line params to the configuration
Adding another class is not as clean a solution as having this information
in the Configuration. The reason is that ...
Christopher Brooks
08:15 AM Bug #4318: RExpression NA converts to string "nil", not value nil
BTW - the test case should probably be checked in and run
as part of the nightly build so that this bug stays fixed.
...
Christopher Brooks

08/14/2009

04:42 PM Bug #4318: RExpression NA converts to string "nil", not value nil
Ok, now I'm just getting confused again. How many different nils are there? Is there a simple way to robustly test ... Oliver Soong
04:24 PM Bug #4318: RExpression NA converts to string "nil", not value nil
I've changed to use StringToken.NIL when we encounter NA objects in R.
This is still different than Token.NIL. String...
ben leinfelder
02:57 PM Bug #4318 (Resolved): RExpression NA converts to string "nil", not value nil
When RExpression exports an NA value, it gets converted to the string "nil", not the actual nil value. See attached ... Oliver Soong
02:56 PM Bug #4317 (Resolved): KAR's dependencies on modules need to be included in KAR metadata
When starting Kepler with a kar in a local repository that needs a module that is not in the current suite, a ClassNo... Aaron Aaron
02:47 PM Bug #4316 (Resolved): re-evaluate how kars are managed in the build and runtime
Currently modules have a /resources/kar directory containing a folder corresponding to each kar. This folder is chec... Aaron Aaron
09:30 AM Bug #4278: Changes to a reopened KAR are not saved to the new KAR
I tried running this in the 'kepler' suite and still had the same behavior. Here is what I did:
-open existing demo w...
ben leinfelder
05:08 PM Bug #4247: Application menu items sometimes disappear on OS X
Here are a few ways to get this to occur just using the kepler suite.
1) Drag a String Length actor to canvas.
2) Se...
Derik Barseghian

08/13/2009

03:54 PM Bug #4087: No reset/x button to clear component searches
First, it works on Windows. The current behavior is functional and convenient. It's good enough to use for now.
Se...
Oliver Soong
02:48 PM Bug #4087: No reset/x button to clear component searches
That seems like a good idea, though the concept of "search button pushed" needs to include hitting Enter, and "Cancel... Derik Barseghian
02:39 PM Bug #4087: No reset/x button to clear component searches
How about this policy:
-Deactivated Cancel button until Search button is pushed
-Activated Cancel button until Cancel...
ben leinfelder
02:38 PM Bug #4087: No reset/x button to clear component searches
make sure to test this on Windows please Aaron Aaron
02:30 PM Bug #4087: No reset/x button to clear component searches
It works now, but see comment #3. I took a quick look at doing that and it seemed more effort than it's worth. Chad c... Derik Barseghian
02:21 PM Bug #4087: No reset/x button to clear component searches
Component searches that hit the network could take a bit longer..."Cancel" would be nice in those situations.
Um, I ...
ben leinfelder
03:34 PM Bug #4247: Application menu items sometimes disappear on OS X
I've found a way to make this happen: delete a run w/ the WRM.
Once you select delete from the context WRM context m...
Derik Barseghian
12:11 PM Bug #4247: Application menu items sometimes disappear on OS X
I just tried to force this to happen in the wrp and kepler suites and could not make it happen. Is this still happen... Chad Berkley
03:32 PM Bug #4140: Workflow Run Manager - delete runs functionality needs to be written
Now also deleting runs from CacheManager and ObjectManager when doing a delete in r20276.
I was going to close this b...
Derik Barseghian
02:52 PM Bug #4278: Changes to a reopened KAR are not saved to the new KAR
This bug is fixed in the Kepler suite, it still has problems in the WRP suite because RIOs do not get cached/saved pr... Aaron Aaron
02:44 PM Bug #4314: exception when searching ecogrid
I also see this error when trying to access the data from one of the dragged "cans":
[run] ERROR (org.ecoinformatics...
Chad Berkley
02:42 PM Bug #4314 (Resolved): exception when searching ecogrid
When I try to search the ecogrid via kepler, I get a long exception (below). To reproduce, go to the data tab in kep... Chad Berkley
02:18 PM Bug #4312: Clicking cancel on "sure you want to exit" dialog exits anyway
I'm not seeing this on XP. Oliver Soong
12:08 PM Bug #4312: Clicking cancel on "sure you want to exit" dialog exits anyway
I saw this on OSX, not sure if it does the same thing on windows/linux. Chad Berkley
12:08 PM Bug #4312 (Resolved): Clicking cancel on "sure you want to exit" dialog exits anyway
If you have an unsaved workflow and you quit kepler, you'll get the "would you like to save your workflow dialog with... Chad Berkley
02:03 PM Bug #4313: Workflow Run Manager - duplicate rows shown for same execution
fixed in r20272. The problem was with the query statement for getting runs, which was returning multiple rows per exe... Derik Barseghian
01:21 PM Bug #4313 (Resolved): Workflow Run Manager - duplicate rows shown for same execution
Sometimes more than one row shows up in the Workflow Run Manager for the same execution. I saw this happen for the fi... Derik Barseghian
12:11 PM Bug #3991: large workflow errors
Just tried it on trunk suite=wrp and was able to open the large ('both.xml') workflow.
When I ran it I got a provenan...
ben leinfelder
11:52 AM Bug #4008: EML 2 Dataset throws errors when accessing public data from mixed public/private datasets
still display warning messages when there is mixed public/private data that prevents a perfect datapackage download, ... ben leinfelder
11:48 AM Bug #4311 (Resolved): Build system appears to lock if there is a conflict upon update
When you do an 'ant update' if a conflict is encountered by svn, the build system appears to lock up. Probably need ... Chad Berkley
11:34 AM Bug #4310 (New): ValueListeners receive valueChanged events when values have not changed
A ValueListener sometimes receives events for a Settable when the Settable's value has not changed. This can lead to ... Daniel Crawl
11:12 AM Bug #4287: Separate user error messages from developer error messages.
Need to check all error messages to make sure they make sense and that an appropriate message is actually displayed. ... Chad Berkley
11:05 AM Bug #4246: Reorganize code in util, core and gui modules
Bug 4305 goes along with this bug. Chad Berkley
10:11 AM Bug #3893: EML 2 Dataset not working with local data
allow the use of the entityTable name when constructing the datacache object - otherwise only one (seemingly arbitrar... ben leinfelder
07:21 PM Bug #4308 (Resolved): Workflow Run Manager - problem with getWorkflowRunsForExecutions in mysql
Dan gets an error from WRM when using a mysql provenance store:
[run] org.kepler.provenance.QueryException: Unable...
Derik Barseghian

08/12/2009

04:22 PM Bug #4306: add command line params to the configuration
Fixed with an alternative solution.
Now, all the command-line args can be iterated through anywhere from Kepler with...
David Welker
03:50 PM Bug #4306: add command line params to the configuration
I'm off work this week, but I would support adding the command line
arguments to the Configuration. I would consider...
Christopher Brooks
02:19 PM Bug #4306 (In Progress): add command line params to the configuration
There's been a request to have an actor know what the command line params were when Kepler was started. It should be... Chad Berkley
03:18 PM Bug #4097: here are some new svg icons for actors
Evaluate these and see if we should include them in 2.0. Chad Berkley
03:11 PM Bug #4171: dragging actor to canvas then back to component tree area gives NPE
I confirmed that this does not happen in the kepler suite. there might be something weird going on with the override... Chad Berkley
02:54 PM Bug #4250: Add other suites to the nightly build
I've haven't had any requests to add more suites to the nightly build so I'm going to close this for now. Any suites... Chad Berkley
02:47 PM Bug #4299: Kepler needs to be evaluated to determine when native (AWT) widgets would be preferable to Swing widgets.
Need to wait for OSX to support this version of java before we can require it. Chad Berkley
02:44 PM Bug #4290: Separate the GUI from the execution engine.
I've gotten off to a good start isolating the execution engine itself. I've added a target to the build called 'buil... Chad Berkley
01:36 PM Bug #4087: No reset/x button to clear component searches
With r20263 now using the Cancel button to do resets.
The Cancel button is clickable at all times--this is probably...
Derik Barseghian
12:39 PM Bug #3985: Types resolved to unacceptable types
Added a check during preinitialize() that will find unknown-to-unknown connections and set the RExpression unknown-ty... ben leinfelder
11:27 AM Bug #3985: Types resolved to unacceptable types
from the RExpression actor we won't "know" the type of the port until the R script executes and we're emitting/readin... ben leinfelder
10:54 AM Bug #4129: "unable to parse the metadata: null" with dataset judithk.306.21
Revision is now at 306.22 - this seems to work with a clean cache from the trunk of kepler.
i'm not getting the metad...
ben leinfelder

08/11/2009

03:13 PM Bug #4305 (Resolved): Move actor classes into the actors module
This will facilitate better modularization of kepler. Right now, the actors (and directors) are described in the act... Chad Berkley
02:47 PM Bug #4147: Error message with selectable text
Now I'm seeing a frame that is too small to accommodate the text and the buttons - they are chopped off.
The text is...
ben leinfelder
02:08 PM Bug #4285: workflow canvas does not repack to fill empty space when top window is resized
Another manifestation of this (?) bug (on Ubuntu) is that if you run Kepler on a display not big enough (in the verti... Timothy McPhillips
11:46 AM Bug #4304 (Resolved): Progress monitor is blank when authenticating for KAR upload
When I do "Save Archive (KAR)" I go through many steps (dialogs popping up everywhere). But after I enter my authenti... ben leinfelder
11:40 AM Bug #4274: Metacat authentication fails under trunk, not under pre-alpha branch
Made the LDAP GUI not a singleton.
Changed the synchronization for the methods.
Seems to be working in these cases:
-...
ben leinfelder
11:38 AM Bug #3273: Improve authentication dialogue so that the reason for authentication is clear
Readded the Domain to the title ben leinfelder
05:17 PM Bug #4303 (Resolved): LSID Component Search
Add ability to search for objects in the component library by their LSID. Aaron Aaron

08/10/2009

04:38 PM Bug #4302 (Resolved): display actor window does not rename
The Display actor creates a window with the same name as the actor. However, when the actor is renamed, the window is... Daniel Crawl
04:23 PM Bug #4019: Workflow View in left pane
this is working pretty well now, closing it out Aaron Aaron
04:22 PM Bug #4055: leftover cachedata files
nevermind, those files are ok Aaron Aaron
04:21 PM Bug #4232: LibraryIndex Unique Identifier
turns out this was being handled ok, closing this out Aaron Aaron
03:24 PM Bug #3639: Report design features, Stage 3
I am closing this bug because I think that at the time that these design features were proposed, they seemed to be us... debi staggs
09:47 AM Bug #4274: Metacat authentication fails under trunk, not under pre-alpha branch
I've been trying to get this working as it was in pre-alpha, but it's hanging forever on the controllingDialog.dispos... ben leinfelder

08/08/2009

12:55 PM Bug #4112: make kepler use OSX dialog boxes
The easiest way to use java.awt.FileDialog for File =>Open etc. would be
to modify ptolemy.gui.Top. Modifyig ptolemy...
Christopher Brooks
06:24 PM Bug #4134: Workflow Run Manager - double clicking on search cell shouldn't sort column
Fixed in r20212. Derik Barseghian

08/07/2009

04:27 PM Bug #4300 (New): Animate at Runtime" checkbox stays checked when director is replaced
If you enable run-time animation of a workflow and then swap in a different director, the "Animate at Runtime" menu i... Timothy McPhillips
03:48 PM Bug #4135: Workflow Run Manager - default sorting (by date) should be applied
Fixed in r20209. Derik Barseghian
03:26 PM Bug #4299 (New): Kepler needs to be evaluated to determine when native (AWT) widgets would be preferable to Swing widgets.
After Java 1.6 update 12, it is acceptable to mix Swing and AWT. In many cases, AWT is superior, because it makes use... David Welker
03:22 PM Bug #4298 (New): The GUI should sensibly support internalization.
The text of all buttons should be either stored in resource bundles or there should be an easy mechanism to make conf... David Welker
03:18 PM Bug #4297 (Resolved): Kepler needs a new layout manager.
The layout manager we currently use fails miserably when run in Linux. If you try to resize Kepler, the canvas and ot... David Welker
03:12 PM Bug #4296 (New): All open Kepler windows should be visible from a Window menu item.
It is standard procedure for applications to have a Window menu item that lists all open windows. We need this featur... David Welker
03:10 PM Bug #4295 (New): Create advanced toolbar support.
It should be possible to specify a set of one or more default toolbars that are visible by default. Furthermore, it s... David Welker
03:07 PM Bug #4294 (New): Kepler should meet established accessibility guidelines.
As a federally funded project, Kepler should meet accessibility guidelines so that people with disabilities are able ... David Welker
03:05 PM Bug #4293 (New): Run, Pause, and Stop should be in the menu, not just the toolbar.
Currently, Kepler does not meet accessibility guidelines. Run, Pause, and Stop can only be accessed via the toolbar, ... David Welker
02:57 PM Bug #4292 (New): Menu items should display the same icon as buttons with the same functionality.
It is good practice to display the same icon in the menu as is shown on a toolbar if a toolbar exists. All functions ... David Welker
02:55 PM Bug #4291 (New): The main menu bar should not change based on the location of focus.
Currently in Kepler, if you are editing a workflow, the menu bar has a rich set of commands. However, if you change f... David Welker
02:49 PM Bug #4290 (In Progress): Separate the GUI from the execution engine.
The GUI needs to be separated from the execution engine so that it is easy to develop specialized GUIs for a particul... David Welker
02:42 PM Bug #4289 (New): Develop strategy for using assertions in the GUI
We need a strategy for making use of assertions. It is important to limit the potential states that the GUI can be in... David Welker
02:41 PM Bug #4288 (New): Develop GUI error handling strategy.
We need to think about how various sorts of errors should be handled. Some should cause immediate failure while other... David Welker
02:40 PM Bug #4287 (In Progress): Separate user error messages from developer error messages.
An error in the GUI should never display a nonsensical stack trace to the user. All stack traces involving the GUI an... David Welker
02:32 PM Bug #4286 (Resolved): Changes to the GUI before 2.0
This bug is meant to be blocked by all changes to the GUI that must occur before the 2.0 release. David Welker
02:31 PM Bug #3724: composite's ports cannot be renamed from within composite--add context menu?
I think this should be fixed for the 2.0 release. It is awkward not being able to edit port names in place. I sugge... Timothy McPhillips
02:27 PM Bug #4112: make kepler use OSX dialog boxes
I think we should consider requiring users to upgrade to Java 1.6 Update 12 or higher for Kepler 2.0.
Before then, i...
David Welker
02:16 PM Bug #4112: make kepler use OSX dialog boxes
This would be great because it apparently would allow me to quickly save or load workflows in my home directory, etc.... Timothy McPhillips
09:54 AM Bug #4112: make kepler use OSX dialog boxes
In order to do this, we need to not use JFileChooser and instead use java.awt.FileDialog. This is the only way to ge... Chad Berkley
02:21 PM Bug #4068: File Menu should display 5 most recently used workflows
I think a list of MRU workflows in the File menu is important to have for the 2.0 release. Timothy McPhillips
02:03 PM Bug #4285 (New): workflow canvas does not repack to fill empty space when top window is resized
On Ubuntu 9.04/JRE 1.5_0_18 the workflow canvas does not repack automatically when the main window is resized. For ... Timothy McPhillips
01:39 PM Bug #4140: Workflow Run Manager - delete runs functionality needs to be written
with r20207 now doing data table cleanup each time execution(s) deleted. Derik Barseghian

08/06/2009

03:48 PM Bug #4278: Changes to a reopened KAR are not saved to the new KAR
one thing that I noticed was that when resaving to a KAR with the same file name, I did not see any indication (in th... ben leinfelder
03:39 PM Bug #4197: Waterflow TPC demo - tracking bug
I've gotten this working in the trunk now - after merging and patching up some new errors.
Ran the base workflow kar ...
ben leinfelder
02:05 PM Bug #4191: Eclipse build is slow the first time "Copying resources to the output folder"
I think this has to do with having many projects in eclipse that depend on each other. Try turning off "build automa... Aaron Aaron
11:30 AM Bug #4191: Eclipse build is slow the first time "Copying resources to the output folder"
I ran into this when trying to setup eclipse this morning. I couldn't see any reason for it. I ended up killing ecl... Chad Berkley
11:25 AM Bug #4259: Fix the 'ant javadoc' command
Most of our jars only contain class files so adding them to the classpath does not seem to get rid of the warnings as... Chad Berkley
08:36 AM Bug #4277: Report Designer - Add drop down selection list to the properties table.
the sort of widgets we'd need [so far] are:
-text area for free text (already have that)
-combo box (two or more alph...
ben leinfelder
08:31 AM Bug #4183: Kepler gives error on command+Q
i remember chad fixing this a while back. verified that i get no error on os x ben leinfelder
08:24 AM Bug #4187: When running with reporting suite, a blank canvas is considered changed and unsaved
i'm not finding this to be the case. tried on two installations of kepler (wrp suite) ben leinfelder
08:18 AM Bug #4187: When running with reporting suite, a blank canvas is considered changed and unsaved
we had this problem a while back - i thought i'd fixed it.
taking another look.
ben leinfelder

08/05/2009

04:09 PM Bug #2123: need a way to uniquely identify actor in a workflow and locate it
The hooking up this highlighting feature with the 'Outline' tab would be a great first step! ben leinfelder
04:07 PM Bug #3273: Improve authentication dialogue so that the reason for authentication is clear
Now the authentication domain is missing from the title bar. This should be readded - as soon as authentication is wo... ben leinfelder
04:05 PM Bug #4153: report-overrides
think this was mis-categorized in SANParks ben leinfelder
04:04 PM Bug #3951: Report Viewer - improve TOC panel
this is extremely low-priority IMO ben leinfelder
03:13 PM Bug #4147: Error message with selectable text
Using a JTextField does not wrap text, so we use a JTextArea.
I'm closing this one, but let's keep an eye out for imp...
Christopher Brooks
02:30 PM Bug #3801: open dialog, common places pane has white box instead of text
This is fixed in the Ptolemy tree.
I added ptolemy.actor.JFileChooserBugFix and modified ptolemy.gui.Top.
ptolemy.gui...
Christopher Brooks
02:28 PM Bug #4282 (Resolved): Duplicate of ptolemy.gui.Top
I'm creating a bug for this so that it does not get lost and because
this will block bug# 3801.
I don't have the ...
Christopher Brooks
01:49 PM Bug #4259: Fix the 'ant javadoc' command
The classpath was not being added to the javadoc command so I'm trying that to see if the errors go away. A lot of t... Chad Berkley
01:21 PM Bug #4281 (In Progress): ant update produces message about running svn cleanup
Under Windows 2003 Server, running "ant update" produces a message
about a file being locked and suggesting running ...
Christopher Brooks
12:46 PM Bug #4258: Add java 1.6 to nightly build
The kepler nightly build now uses java 1.6 on the fedora core 9 machine. When more of the platforms have java 1.6 in... Chad Berkley
11:39 AM Bug #4280 (Resolved): ant task fails under Windows
ant task fails under Window.
bash-3.2$ svn co https://code.kepler-project.org/code/kepler/trunk/modules/build-area...
Christopher Brooks
10:51 AM Bug #4279: FOP give image error on some systems (linux, windows so far)
Turns out the JAI image reader for PNGs was the culprit. There's a Sun image reader that is also registered, but the ... ben leinfelder

08/04/2009

12:31 AM Bug #4022: undesired file:\ prefix added by FileParameter
Fixed.
The problem was that ptolemy.gui.Query was calling URI.relativize() but
not reconverting the URI back to a fil...
Christopher Brooks

08/03/2009

04:29 PM Bug #4279: FOP give image error on some systems (linux, windows so far)
Preliminary testing:
-recreated the error on my Ubuntu machine.
-upgraded the Apache Commons IO jar to 1.4 (from 1.3)...
ben leinfelder
04:29 PM Bug #4279 (Resolved): FOP give image error on some systems (linux, windows so far)
When adding image (png) output from the R actor, we were getting odd image IO errors from the Apache-FOP classes. It'... ben leinfelder
11:38 AM Bug #4278 (Resolved): Changes to a reopened KAR are not saved to the new KAR
First encountered this in south africa:
-make a new workflow
-save as kar
-close
-open kar
-edit workflow
-save...
ben leinfelder
 

Also available in: Atom